Query psy16958
Match_columns 257
No_of_seqs 160 out of 251
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 18:04:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 97.5 7.9E-05 2.7E-09 60.8 4.7 55 95-149 6-68 (154)
2 2kq2_A Ribonuclease H-related 97.5 0.00016 5.4E-09 59.0 6.3 55 95-149 5-68 (147)
3 3u3g_D Ribonuclease H, RNAse H 96.9 0.00052 1.8E-08 53.6 3.4 53 96-149 3-63 (140)
4 3hst_B Protein RV2228C/MT2287; 96.9 0.00076 2.6E-08 53.1 4.3 53 96-149 3-64 (141)
5 3p1g_A Xenotropic murine leuke 96.9 0.00077 2.6E-08 56.4 4.3 52 96-147 23-79 (165)
6 3h08_A RNH (ribonuclease H); R 96.6 0.00072 2.5E-08 54.4 1.9 53 95-148 3-61 (146)
7 1jl1_A Ribonuclease HI; RNAse 96.1 0.0028 9.6E-08 51.7 2.9 53 96-149 4-62 (155)
8 2ehg_A Ribonuclease HI; RNAse 96.0 0.0074 2.5E-07 48.3 4.9 53 97-149 2-66 (149)
9 3qio_A GAG-POL polyprotein; RN 96.0 0.0087 3E-07 49.0 5.2 53 94-147 10-65 (150)
10 2e4l_A Ribonuclease HI, RNAse 95.9 0.0037 1.3E-07 51.3 2.7 54 95-149 5-64 (158)
11 1ril_A Ribonuclease H; hydrola 95.7 0.0037 1.3E-07 51.8 1.8 54 95-149 7-66 (166)
12 2zd1_A Reverse transcriptase/r 94.6 0.028 9.5E-07 54.7 4.7 67 94-161 437-513 (557)
13 1mu2_A HIV-2 RT; HIV-2 reverse 93.3 0.068 2.3E-06 51.9 4.7 50 94-145 434-487 (555)
14 1zbf_A Ribonuclease H-related 93.2 0.067 2.3E-06 43.6 3.8 55 95-149 10-69 (142)
15 4htu_A Ribonuclease H, RNAse H 90.3 0.14 4.7E-06 41.7 2.5 54 95-149 4-63 (134)
16 2lsn_A Reverse transcriptase; 89.1 0.33 1.1E-05 40.3 4.0 53 96-148 7-73 (165)
17 3mpz_A Cytidine deaminase; ssg 62.4 21 0.00072 29.3 6.8 36 109-144 47-86 (150)
18 3r2n_A Cytidine deaminase; str 59.7 25 0.00085 28.3 6.7 36 109-144 32-71 (138)
19 3dmo_A Cytidine deaminase; str 47.9 21 0.00072 28.8 4.4 37 108-144 32-72 (138)
20 2fr5_A Cytidine deaminase; tet 47.3 25 0.00084 28.5 4.8 38 107-144 35-76 (146)
21 3b8f_A Putative blasticidin S 44.2 23 0.00078 28.4 4.1 41 100-144 19-63 (142)
22 2d30_A Cytidine deaminase; pur 40.7 36 0.0012 27.3 4.8 37 108-144 33-73 (141)
23 1r5t_A Cytidine deaminase; zin 35.4 45 0.0016 26.6 4.6 37 107-143 31-71 (142)
24 1uwz_A Cytidine deaminase; CDD 34.7 52 0.0018 26.0 4.8 36 109-144 25-64 (136)
25 4eg2_A Cytidine deaminase; UMP 33.0 90 0.0031 28.2 6.6 103 30-144 3-116 (298)
26 3oj6_A Blasticidin-S deaminase 31.9 47 0.0016 27.4 4.2 36 108-143 51-88 (158)
27 1rw3_A POL polyprotein; RNA an 29.7 26 0.00088 32.6 2.5 52 94-147 344-405 (455)
28 2qgp_A HNH endonuclease; Q39X4 28.1 18 0.00061 27.8 0.9 18 193-210 34-56 (112)
29 2zqe_A MUTS2 protein; alpha/be 27.0 93 0.0032 22.4 4.7 35 81-116 46-80 (83)
30 2z3g_A Blasticidin-S deaminase 23.5 99 0.0034 24.2 4.5 39 106-144 25-65 (130)
31 1ctt_A Cytidine deaminase; hyd 20.1 1.1E+02 0.0038 27.5 4.7 56 81-144 190-249 (294)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=97.52 E-value=7.9e-05 Score=60.78 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=42.4
Q ss_pred CcceEEecCCCCCC-----ceeeEEeeCC---ceEEeeCCCCccchHHHHHHHHHHHHHHhhh
Q psy16958 95 RKETFYCDGSKSPQ-----HCGSAFVHEG---NTITFKLPNISSSYTAEIIALQKCIQFITQN 149 (257)
Q Consensus 95 ~~~~iyTDgSK~~~-----~vG~ai~~~~---~~~~~kLp~~~SIftAE~~AIl~Al~~i~q~ 149 (257)
+...||||||...+ ..|++++..+ ......|+..++...||+.|++.||+++...
T Consensus 6 ~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~ 68 (154)
T 2qkb_A 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQ 68 (154)
T ss_dssp TEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhC
Confidence 56789999997643 2688877432 2456778777899999999999999998754
No 2
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=97.50 E-value=0.00016 Score=58.99 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=39.7
Q ss_pred CcceEEecCCCCCCceeeEEe--eCCce--EEe-eC--CC--CccchHHHHHHHHHHHHHHhhh
Q psy16958 95 RKETFYCDGSKSPQHCGSAFV--HEGNT--ITF-KL--PN--ISSSYTAEIIALQKCIQFITQN 149 (257)
Q Consensus 95 ~~~~iyTDgSK~~~~vG~ai~--~~~~~--~~~-kL--p~--~~SIftAE~~AIl~Al~~i~q~ 149 (257)
+...||||||...+..|++++ .++.. ... .+ |. ..+.+.||+.|++.||+++...
T Consensus 5 ~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~ 68 (147)
T 2kq2_A 5 TEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQL 68 (147)
T ss_dssp SCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHC
Confidence 567899999988877777766 34432 233 33 43 2578999999999999987654
No 3
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=96.92 E-value=0.00052 Score=53.62 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=36.6
Q ss_pred cceEEecCCCCCC--ceeeEEe--eCC--c--eEEeeCCCCccchHHHHHHHHHHHHHHhhh
Q psy16958 96 KETFYCDGSKSPQ--HCGSAFV--HEG--N--TITFKLPNISSSYTAEIIALQKCIQFITQN 149 (257)
Q Consensus 96 ~~~iyTDgSK~~~--~vG~ai~--~~~--~--~~~~kLp~~~SIftAE~~AIl~Al~~i~q~ 149 (257)
...||||||...+ ..|++++ ..+ . .....++ .++...||..|++.||+++.+.
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~ 63 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQMF 63 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHGGG
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHHHc
Confidence 4689999997643 4666655 322 1 2233343 4688899999999999998753
No 4
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=96.91 E-value=0.00076 Score=53.10 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=36.7
Q ss_pred cceEEecCCCCCC--ceeeEEe--eCC--c---eEEeeCCCCccchHHHHHHHHHHHHHHhhh
Q psy16958 96 KETFYCDGSKSPQ--HCGSAFV--HEG--N---TITFKLPNISSSYTAEIIALQKCIQFITQN 149 (257)
Q Consensus 96 ~~~iyTDgSK~~~--~vG~ai~--~~~--~---~~~~kLp~~~SIftAE~~AIl~Al~~i~q~ 149 (257)
...||||||...+ ..|++++ +.+ . .....++ .++...||..|++.||+++.+.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~ 64 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIG-RATNNVAEYRGLIAGLDDAVKL 64 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCC-CCchHHHHHHHHHHHHHHHHHC
Confidence 4689999997643 4566654 432 1 2233343 5677899999999999998764
No 5
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=96.89 E-value=0.00077 Score=56.39 Aligned_cols=52 Identities=33% Similarity=0.465 Sum_probs=37.9
Q ss_pred cceEEecCCCC--CCc--eeeEEeeCCceE-EeeCCCCccchHHHHHHHHHHHHHHh
Q psy16958 96 KETFYCDGSKS--PQH--CGSAFVHEGNTI-TFKLPNISSSYTAEIIALQKCIQFIT 147 (257)
Q Consensus 96 ~~~iyTDgSK~--~~~--vG~ai~~~~~~~-~~kLp~~~SIftAE~~AIl~Al~~i~ 147 (257)
...||||||.. .+. .|++++.++... ...++..++...||..|++.||+++.
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~ 79 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAE 79 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHTB
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHcc
Confidence 47899999986 343 444444544332 33577888999999999999999983
No 6
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=96.59 E-value=0.00072 Score=54.35 Aligned_cols=53 Identities=21% Similarity=0.272 Sum_probs=36.7
Q ss_pred CcceEEecCCCCCC--ceeeEEe--eCCce--EEeeCCCCccchHHHHHHHHHHHHHHhh
Q psy16958 95 RKETFYCDGSKSPQ--HCGSAFV--HEGNT--ITFKLPNISSSYTAEIIALQKCIQFITQ 148 (257)
Q Consensus 95 ~~~~iyTDgSK~~~--~vG~ai~--~~~~~--~~~kLp~~~SIftAE~~AIl~Al~~i~q 148 (257)
+...||||||-..+ ..|++++ .++.. ....++ .++...||..|++.||+.+..
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~-~~Tnn~aEl~A~~~AL~~~~~ 61 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDP-ATTNNRMELMAAIKGLEALKE 61 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCSS
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCC-CCcHHHHHHHHHHHHHHhcCc
Confidence 46789999996543 3666655 44422 233344 467778999999999998864
No 7
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=96.10 E-value=0.0028 Score=51.74 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=36.6
Q ss_pred cceEEecCCCCCC--ceeeEEe--eCCc--eEEeeCCCCccchHHHHHHHHHHHHHHhhh
Q psy16958 96 KETFYCDGSKSPQ--HCGSAFV--HEGN--TITFKLPNISSSYTAEIIALQKCIQFITQN 149 (257)
Q Consensus 96 ~~~iyTDgSK~~~--~vG~ai~--~~~~--~~~~kLp~~~SIftAE~~AIl~Al~~i~q~ 149 (257)
...||||||...+ ..|++++ ..+. .....++ .++...||..|++.||+++.+.
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~~~~~ 62 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYT-RTTNNRMELMAAIVALEALKEH 62 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCCSC
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCCC-CCcHHHHHHHHHHHHHHHhCcC
Confidence 5789999998643 3566655 3332 2233343 4577899999999999988653
No 8
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=96.01 E-value=0.0074 Score=48.29 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=35.6
Q ss_pred ceEEecCCCC---CCceee-EEe--eCCce-EEe--eCC---CCccchHHHHHHHHHHHHHHhhh
Q psy16958 97 ETFYCDGSKS---PQHCGS-AFV--HEGNT-ITF--KLP---NISSSYTAEIIALQKCIQFITQN 149 (257)
Q Consensus 97 ~~iyTDgSK~---~~~vG~-ai~--~~~~~-~~~--kLp---~~~SIftAE~~AIl~Al~~i~q~ 149 (257)
..||||||.. .+..|+ +++ +++.. ..+ .+. ..++...||..|++.||+++...
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~ 66 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRL 66 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHc
Confidence 5799999976 245664 543 43332 222 222 36788899999999999988754
No 9
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=95.96 E-value=0.0087 Score=48.95 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=35.8
Q ss_pred CCcceEEecCCCCCC--ceeeEEee-CCceEEeeCCCCccchHHHHHHHHHHHHHHh
Q psy16958 94 NRKETFYCDGSKSPQ--HCGSAFVH-EGNTITFKLPNISSSYTAEIIALQKCIQFIT 147 (257)
Q Consensus 94 ~~~~~iyTDgSK~~~--~vG~ai~~-~~~~~~~kLp~~~SIftAE~~AIl~Al~~i~ 147 (257)
.+...||||||-..+ .-|++++. .+....+.++ .++.-.||..|++.||+...
T Consensus 10 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~-~~Tnn~aEl~A~i~AL~~~~ 65 (150)
T 3qio_A 10 VGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLT-DTTNQKTELQAIYLALQDSG 65 (150)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEES-SCCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeCC-CCCHHHHHHHHHHHHHHhCC
Confidence 457899999996432 34555552 2233334453 46778899999999999863
No 10
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=95.89 E-value=0.0037 Score=51.26 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=36.9
Q ss_pred CcceEEecCCCCC--CceeeEEe--eCCce--EEeeCCCCccchHHHHHHHHHHHHHHhhh
Q psy16958 95 RKETFYCDGSKSP--QHCGSAFV--HEGNT--ITFKLPNISSSYTAEIIALQKCIQFITQN 149 (257)
Q Consensus 95 ~~~~iyTDgSK~~--~~vG~ai~--~~~~~--~~~kLp~~~SIftAE~~AIl~Al~~i~q~ 149 (257)
....||||||... +..|++++ +.+.. ....++ .++...||+.|++.||+++.+.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~AL~~~~~~ 64 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFS-LTTNNRMELLAPIVALEALKEP 64 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCSSC
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCcC-CCccHHHHHHHHHHHHHHhccC
Confidence 3578999999764 33566665 34322 233444 3677889999999999987643
No 11
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=95.66 E-value=0.0037 Score=51.78 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=36.3
Q ss_pred CcceEEecCCCCCC--ceeeEEe--eCCce--EEeeCCCCccchHHHHHHHHHHHHHHhhh
Q psy16958 95 RKETFYCDGSKSPQ--HCGSAFV--HEGNT--ITFKLPNISSSYTAEIIALQKCIQFITQN 149 (257)
Q Consensus 95 ~~~~iyTDgSK~~~--~vG~ai~--~~~~~--~~~kLp~~~SIftAE~~AIl~Al~~i~q~ 149 (257)
....||||||...+ ..|++++ +.+.. ....+ ..++...||+.|++.||+++...
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~~ 66 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKEP 66 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCSC
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhccC
Confidence 35789999997743 3666666 33322 22222 24577889999999999987654
No 12
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=94.59 E-value=0.028 Score=54.66 Aligned_cols=67 Identities=21% Similarity=0.240 Sum_probs=42.2
Q ss_pred CCcceEEecCCCCCC--ceeeEEe-eCCceEEeeCCCCccchHHHHHHHHHHHHHHhhhcc-------ccccccCCCC
Q psy16958 94 NRKETFYCDGSKSPQ--HCGSAFV-HEGNTITFKLPNISSSYTAEIIALQKCIQFITQNKK-------IKPETQYWPT 161 (257)
Q Consensus 94 ~~~~~iyTDgSK~~~--~vG~ai~-~~~~~~~~kLp~~~SIftAE~~AIl~Al~~i~q~~~-------IK~~i~~W~~ 161 (257)
.+...||||||...+ ..|++++ ..+....+.+ ..++-..||..|++.||+.+...-. +...+..|..
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~~~~v~I~tDS~~vi~~i~~~~~ 513 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPD 513 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHSCSEEEEEECCHHHHHHHTTCCS
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhCCCcEEEEeChHHHHHHHhcCCc
Confidence 345899999996532 2455555 2333333343 3567889999999999998832212 2344566765
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=93.32 E-value=0.068 Score=51.90 Aligned_cols=50 Identities=28% Similarity=0.310 Sum_probs=34.4
Q ss_pred CCcceEEecCCCCCCc--eeeEEe--eCCceEEeeCCCCccchHHHHHHHHHHHHH
Q psy16958 94 NRKETFYCDGSKSPQH--CGSAFV--HEGNTITFKLPNISSSYTAEIIALQKCIQF 145 (257)
Q Consensus 94 ~~~~~iyTDgSK~~~~--vG~ai~--~~~~~~~~kLp~~~SIftAE~~AIl~Al~~ 145 (257)
.+...||||||...++ .|++++ .++ .....+. .++-..||..|++.||+.
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~-~~~~~~~-~~TNn~aEl~A~i~aL~~ 487 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGK-DKVKKLE-QTTNQQAELEAFAMALTD 487 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSC-EEEEEES-SCCHHHHHHHHHHHHHHT
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCC-EeeccCC-CCCHHHHHHHHHHHHHHc
Confidence 3468999999976432 456655 333 2334443 466789999999999987
No 14
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=93.21 E-value=0.067 Score=43.61 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=36.1
Q ss_pred CcceEEecCCCCC--CceeeEEee--CCceEEeeCC-CCccchHHHHHHHHHHHHHHhhh
Q psy16958 95 RKETFYCDGSKSP--QHCGSAFVH--EGNTITFKLP-NISSSYTAEIIALQKCIQFITQN 149 (257)
Q Consensus 95 ~~~~iyTDgSK~~--~~vG~ai~~--~~~~~~~kLp-~~~SIftAE~~AIl~Al~~i~q~ 149 (257)
....||||||-.. +..|.+++. .+......-+ ..++--.||..|++.||+.+.+.
T Consensus 10 ~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~ 69 (142)
T 1zbf_A 10 IWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKER 69 (142)
T ss_dssp CSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhC
Confidence 5678999998653 346777663 2333322222 13455569999999999988764
No 15
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=90.28 E-value=0.14 Score=41.71 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=33.5
Q ss_pred CcceEEecCCCCC--Cceee-EEe-eCCceEEe--eCCCCccchHHHHHHHHHHHHHHhhh
Q psy16958 95 RKETFYCDGSKSP--QHCGS-AFV-HEGNTITF--KLPNISSSYTAEIIALQKCIQFITQN 149 (257)
Q Consensus 95 ~~~~iyTDgSK~~--~~vG~-ai~-~~~~~~~~--kLp~~~SIftAE~~AIl~Al~~i~q~ 149 (257)
....||||||-.. +..|. +|+ ..+..... .++ .++-=.||..|++.||+.+.+.
T Consensus 4 ~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~-~tTNN~aEl~A~i~aL~~l~~~ 63 (134)
T 4htu_A 4 IWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKER 63 (134)
T ss_dssp CSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHT
T ss_pred cceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCC-CCchHHHHHHHHHHHHHHHHhC
Confidence 4568999999553 33566 444 32222222 222 3344469999999999988753
No 16
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=89.11 E-value=0.33 Score=40.29 Aligned_cols=53 Identities=23% Similarity=0.301 Sum_probs=30.1
Q ss_pred cceEEecCCCCCC-------ceeeEEe--eCC----ceEEeeCC-CCccchHHHHHHHHHHHHHHhh
Q psy16958 96 KETFYCDGSKSPQ-------HCGSAFV--HEG----NTITFKLP-NISSSYTAEIIALQKCIQFITQ 148 (257)
Q Consensus 96 ~~~iyTDgSK~~~-------~vG~ai~--~~~----~~~~~kLp-~~~SIftAE~~AIl~Al~~i~q 148 (257)
...||||||-..+ +-|++|+ ..+ ....+.++ +..+=..||..|+..|++....
T Consensus 7 evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~ 73 (165)
T 2lsn_A 7 EGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALK 73 (165)
T ss_dssp SEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 4679999995432 2566665 222 12334443 3334456777777777765543
No 17
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=62.45 E-value=21 Score=29.28 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=21.9
Q ss_pred ceeeEEeeCCc--eEEeeCCCCc--cchHHHHHHHHHHHH
Q psy16958 109 HCGSAFVHEGN--TITFKLPNIS--SSYTAEIIALQKCIQ 144 (257)
Q Consensus 109 ~vG~ai~~~~~--~~~~kLp~~~--SIftAE~~AIl~Al~ 144 (257)
+||+|+...+- ..-..+-+-+ .---||..||.+|+.
T Consensus 47 ~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs 86 (150)
T 3mpz_A 47 PVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHS 86 (150)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred CEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHH
Confidence 89999985443 2233332211 222399999999964
No 18
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=59.65 E-value=25 Score=28.30 Aligned_cols=36 Identities=17% Similarity=0.039 Sum_probs=21.7
Q ss_pred ceeeEEeeCC--ceEEeeCCCCc--cchHHHHHHHHHHHH
Q psy16958 109 HCGSAFVHEG--NTITFKLPNIS--SSYTAEIIALQKCIQ 144 (257)
Q Consensus 109 ~vG~ai~~~~--~~~~~kLp~~~--SIftAE~~AIl~Al~ 144 (257)
.||+|+...+ +..-..+-+-+ .---||..||.+|+.
T Consensus 32 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~ 71 (138)
T 3r2n_A 32 PVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYA 71 (138)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred cEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHH
Confidence 8999998544 22233332221 223399999999953
No 19
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=47.87 E-value=21 Score=28.82 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=22.5
Q ss_pred CceeeEEeeCCceEEeeCCCCccch----HHHHHHHHHHHH
Q psy16958 108 QHCGSAFVHEGNTITFKLPNISSSY----TAEIIALQKCIQ 144 (257)
Q Consensus 108 ~~vG~ai~~~~~~~~~kLp~~~SIf----tAE~~AIl~Al~ 144 (257)
=+||+|+...+-.+....--+...| -||..||.+|+.
T Consensus 32 F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs 72 (138)
T 3dmo_A 32 FKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALA 72 (138)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHH
Confidence 3799999855433322222222223 499999999963
No 20
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=47.30 E-value=25 Score=28.50 Aligned_cols=38 Identities=24% Similarity=0.189 Sum_probs=22.6
Q ss_pred CCceeeEEeeCC--ceEEeeCCCCc--cchHHHHHHHHHHHH
Q psy16958 107 PQHCGSAFVHEG--NTITFKLPNIS--SSYTAEIIALQKCIQ 144 (257)
Q Consensus 107 ~~~vG~ai~~~~--~~~~~kLp~~~--SIftAE~~AIl~Al~ 144 (257)
.-.||+|++..+ +.....+-+-+ .---||..||..|+.
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~ 76 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAIS 76 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHh
Confidence 458999999433 33333333221 223399999999953
No 21
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=44.20 E-value=23 Score=28.39 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=24.6
Q ss_pred EecCCCCCCceeeEEeeCCc--eEEeeCCCCc--cchHHHHHHHHHHHH
Q psy16958 100 YCDGSKSPQHCGSAFVHEGN--TITFKLPNIS--SSYTAEIIALQKCIQ 144 (257)
Q Consensus 100 yTDgSK~~~~vG~ai~~~~~--~~~~kLp~~~--SIftAE~~AIl~Al~ 144 (257)
|.-+| .||+|+...+- .....+-+.+ ...-||..||..|+.
T Consensus 19 yaPyS----~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~ 63 (142)
T 3b8f_A 19 YPNDW----GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHK 63 (142)
T ss_dssp CSSSC----EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHH
T ss_pred CCCCC----CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHH
Confidence 55556 89999985432 2222222222 233499999999964
No 22
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=40.67 E-value=36 Score=27.35 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=21.9
Q ss_pred CceeeEEeeCC--ceEEeeCCC--CccchHHHHHHHHHHHH
Q psy16958 108 QHCGSAFVHEG--NTITFKLPN--ISSSYTAEIIALQKCIQ 144 (257)
Q Consensus 108 ~~vG~ai~~~~--~~~~~kLp~--~~SIftAE~~AIl~Al~ 144 (257)
-.||+|+...+ +.....+-+ +..---||..||..|+.
T Consensus 33 f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs 73 (141)
T 2d30_A 33 FQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVS 73 (141)
T ss_dssp CCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred CcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHH
Confidence 37999998533 222333322 11223399999999963
No 23
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=35.42 E-value=45 Score=26.62 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=22.1
Q ss_pred CCceeeEEeeCC--ceEEeeCCCCc--cchHHHHHHHHHHH
Q psy16958 107 PQHCGSAFVHEG--NTITFKLPNIS--SSYTAEIIALQKCI 143 (257)
Q Consensus 107 ~~~vG~ai~~~~--~~~~~kLp~~~--SIftAE~~AIl~Al 143 (257)
.-.||+|+...+ +.....+-+-+ .-.-||..||..|+
T Consensus 31 ~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~ 71 (142)
T 1r5t_A 31 HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVL 71 (142)
T ss_dssp CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHH
T ss_pred CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHH
Confidence 447999998533 22233333221 22349999999985
No 24
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=34.67 E-value=52 Score=26.02 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=22.5
Q ss_pred ceeeEEeeCC--ceEEeeCCC--CccchHHHHHHHHHHHH
Q psy16958 109 HCGSAFVHEG--NTITFKLPN--ISSSYTAEIIALQKCIQ 144 (257)
Q Consensus 109 ~vG~ai~~~~--~~~~~kLp~--~~SIftAE~~AIl~Al~ 144 (257)
.||+|++..+ +......-+ +....-||..||..|+.
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~ 64 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVS 64 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHH
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHH
Confidence 7999998533 333333332 22334499999999964
No 25
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=33.00 E-value=90 Score=28.25 Aligned_cols=103 Identities=7% Similarity=-0.071 Sum_probs=53.5
Q ss_pred ChhHHHHHHHhhhCCCC-ccccccCCCCCCCCCCCCcch-hhhhh--hccCCChHHHHHHHHHHHH-hcCCcceEEecCC
Q psy16958 30 PTSTRFKQYFTDANINL-TNTAYMKQSIPPWTITLPETQ-LLLKE--KKTNISPNEIKSKFNQLLN-KVNRKETFYCDGS 104 (257)
Q Consensus 30 p~~~~~~~~~~~~~~~l-~~i~~~~~~~PPW~~~~~Int-~L~~~--~K~~T~p~~~~~~f~~ii~-~~~~~~~iyTDgS 104 (257)
+.+.||+..+..+.-+| +-+.|+ ...+-|.- .++- +..+. .-..+.......+.....+ -|.++ |
T Consensus 3 ~m~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~--~~~~~~~~~l~~~~~~~~~el~~~l~~~A~~~AyaPy-------S 72 (298)
T 4eg2_A 3 AMRNRIEQALQQMPASFAPYLREL-VLAKDFDA--TFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPI-------S 72 (298)
T ss_dssp TTHHHHHHHHHHSCTTTHHHHHHH-HTSTTCCS--EECHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCBCTT-------T
T ss_pred hHHHHHHHHHHhCCHHHHHHHHHH-HhccCCCc--ccCHHHHHHHHHHhCCCHHHHHHHHHHHHHhhCcCCc-------C
Confidence 46788888888877777 444444 11222221 1111 11111 1122334444444444444 33333 3
Q ss_pred CCCCceeeEEeeCC--ceEEeeCCCCccchH----HHHHHHHHHHH
Q psy16958 105 KSPQHCGSAFVHEG--NTITFKLPNISSSYT----AEIIALQKCIQ 144 (257)
Q Consensus 105 K~~~~vG~ai~~~~--~~~~~kLp~~~SIft----AE~~AIl~Al~ 144 (257)
+. +||+|+...+ +.....+-+-+..|+ ||..||.+|+.
T Consensus 73 ~F--~VGAAll~~dG~i~~G~NvEna~as~~~t~CAEr~Ai~~Av~ 116 (298)
T 4eg2_A 73 EF--YVGAIVRGISGRLYLGANMEFTGAQLGQTVHAEQCAISHAWM 116 (298)
T ss_dssp CC--CCEEEEEETTSCEEEEECBCCTTSCGGGCBCHHHHHHHHHHH
T ss_pred CC--cEEEEEEECCCcEEEEEcccccccccCccccHHHHHHHHHHh
Confidence 22 8999998443 444455554333443 99999999974
No 26
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=31.86 E-value=47 Score=27.38 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=22.9
Q ss_pred CceeeEEeeCC--ceEEeeCCCCccchHHHHHHHHHHH
Q psy16958 108 QHCGSAFVHEG--NTITFKLPNISSSYTAEIIALQKCI 143 (257)
Q Consensus 108 ~~vG~ai~~~~--~~~~~kLp~~~SIftAE~~AIl~Al 143 (257)
-+||+|+...+ +..--.+-++.+---||..||.+|+
T Consensus 51 f~VGAAll~~dG~i~tG~NVEn~~~~lCAEr~Ai~~Av 88 (158)
T 3oj6_A 51 YSVASAAISDDGRVFSGVNVYHFNGGPCAELVVLGVAA 88 (158)
T ss_dssp SCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHH
T ss_pred CcEEEEEEeCCCCEEEEEccccCCccccHHHHHHHHHH
Confidence 37999998443 3333333333333459999999996
No 27
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=29.70 E-value=26 Score=32.59 Aligned_cols=52 Identities=8% Similarity=0.022 Sum_probs=30.7
Q ss_pred CCcceEEecCCCCCCceeeEEeeCC----ceE---EeeCC---CCccchHHHHHHHHHHHHHHh
Q psy16958 94 NRKETFYCDGSKSPQHCGSAFVHEG----NTI---TFKLP---NISSSYTAEIIALQKCIQFIT 147 (257)
Q Consensus 94 ~~~~~iyTDgSK~~~~vG~ai~~~~----~~~---~~kLp---~~~SIftAE~~AIl~Al~~i~ 147 (257)
.....+|||||. .++|+.....+ ..+ +-+|. ...|++-.|++||..|++...
T Consensus 344 ~~~~~l~~DAS~--~~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~ 405 (455)
T 1rw3_A 344 TKPFELFVDEKQ--GYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAG 405 (455)
T ss_dssp CCTTSCEEEEEE--CSSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeccC--CcceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHH
Confidence 455689999984 34454222111 111 12222 234888899999999986543
No 28
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=28.07 E-value=18 Score=27.76 Aligned_cols=18 Identities=33% Similarity=0.781 Sum_probs=14.0
Q ss_pred CCCCCCCCCCc-----cccceee
Q psy16958 193 PRPICDTCHTP-----LSVAHIL 210 (257)
Q Consensus 193 ~~p~C~~Cg~~-----~Tv~HIL 210 (257)
+...|.+||.. .+|+||+
T Consensus 34 ~~~~C~yCg~~~~~~~~~vDHIi 56 (112)
T 2qgp_A 34 ARGICHYCGEIFPPEELTMDHLV 56 (112)
T ss_dssp HHTBCTTTCCBCCGGGEEEEESS
T ss_pred cCCcCCCCCCcCCCCCcEEEEEe
Confidence 34679999964 5899997
No 29
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=26.97 E-value=93 Score=22.41 Aligned_cols=35 Identities=11% Similarity=0.312 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCcceEEecCCCCCCceeeEEee
Q psy16958 81 EIKSKFNQLLNKVNRKETFYCDGSKSPQHCGSAFVH 116 (257)
Q Consensus 81 ~~~~~f~~ii~~~~~~~~iyTDgSK~~~~vG~ai~~ 116 (257)
++|+.+.+.+.+ .+...-|.+|...+++.|+-+|.
T Consensus 46 vLr~~V~~~L~~-~~~V~~f~~a~~~~GG~Gat~V~ 80 (83)
T 2zqe_A 46 ALRQAIREALRR-DKRVESFADAPPGEGGHGVTVVA 80 (83)
T ss_dssp HHHHHHHHHHHH-CTTEEEEEECCTTTTGGGEEEEE
T ss_pred HHHHHHHHHHhc-CCceeEEEEcCcccCCCEEEEEE
Confidence 789999999996 47889999999999999999873
No 30
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=23.46 E-value=99 Score=24.17 Aligned_cols=39 Identities=13% Similarity=0.094 Sum_probs=23.9
Q ss_pred CCCceeeEEeeCC--ceEEeeCCCCccchHHHHHHHHHHHH
Q psy16958 106 SPQHCGSAFVHEG--NTITFKLPNISSSYTAEIIALQKCIQ 144 (257)
Q Consensus 106 ~~~~vG~ai~~~~--~~~~~kLp~~~SIftAE~~AIl~Al~ 144 (257)
+.-.||+|+...+ +.....+-.+..-.-||..||..|+.
T Consensus 25 s~f~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~ 65 (130)
T 2z3g_A 25 EDYSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAA 65 (130)
T ss_dssp SSSCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHH
T ss_pred CCCCEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHH
Confidence 3468999998433 22233333333334599999999853
No 31
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=20.10 E-value=1.1e+02 Score=27.47 Aligned_cols=56 Identities=13% Similarity=-0.130 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCcceEEecCCCCCCceeeEEeeCC--ceEEeeCCC--CccchHHHHHHHHHHHH
Q psy16958 81 EIKSKFNQLLNKVNRKETFYCDGSKSPQHCGSAFVHEG--NTITFKLPN--ISSSYTAEIIALQKCIQ 144 (257)
Q Consensus 81 ~~~~~f~~ii~~~~~~~~iyTDgSK~~~~vG~ai~~~~--~~~~~kLp~--~~SIftAE~~AIl~Al~ 144 (257)
.+.....+..+ .-|...| ...||+|+...+ +......-+ +..-.-||..||..|+.
T Consensus 190 ~L~~~A~~a~~------~ayaPYS--~f~VGAAl~~~dG~i~tG~NvEnasy~~tlCAEr~Ai~~av~ 249 (294)
T 1ctt_A 190 ALSQAAIAAAN------RSHMPYS--KSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNL 249 (294)
T ss_dssp HHHHHHHHHHH------TCBCTTT--CCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------hcCCCcC--CCceEEEEEeCCCCEEEEEeeecCCCCCccCHHHHHHHHHHH
Confidence 34455555554 2566666 458999998544 222333322 22334499999999864
Done!