RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16958
(257 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 2e-04
Identities = 42/317 (13%), Positives = 82/317 (25%), Gaps = 97/317 (30%)
Query: 1 ILQNPKNPGYEATIHHPPQSNINF-----NRKHKPTSTRFKQYFTDANINLTNTAYMKQS 55
+L + + + + N F + + S + Y + L N Q
Sbjct: 71 LLSKQEE-MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDN---QV 125
Query: 56 IPPWTITLPETQLLLKEKKTNISPNEI----------KSKFNQLLNKVNRKETFYCDGSK 105
+ ++ + L L++ + P + K+ + V C
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT---WVALDVCLSYKVQC---- 178
Query: 106 SPQHCGSAF-VHEGNTITFKLPNISSSYTAEIIALQKCIQFITQNKKIKPETQYWPTSSR 164
+ F ++ N +S + LQK + I N + + SS
Sbjct: 179 --KMDFKIFWLNLKN---------CNSPETVLEMLQKLLYQIDPNWTSRSD-----HSSN 222
Query: 165 QKRIEEVIIARLR--IGHTRVSHSYLI-----DKKPRPICDT----CHTPL-----SVAH 208
K I A LR + + L+ + K + C L V
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK---AWNAFNLSCKILLTTRFKQVTD 279
Query: 209 ILIECTKFQV----------ERQKL-------------LP------HPLTLENLLG---- 235
L T + + LP +P L +++
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-SIIAESIR 338
Query: 236 NNKETIDSTLKYLYKTK 252
+ T D+
Sbjct: 339 DGLATWDNWKHVNCDKL 355
Score = 40.6 bits (94), Expect = 4e-04
Identities = 44/265 (16%), Positives = 76/265 (28%), Gaps = 85/265 (32%)
Query: 11 EATIHHPPQSNI--NFNRKHKPTSTRFKQYFTD-------ANINLTNTAYMKQS------ 55
E +P + +I R T +K D +++N+ A ++
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 56 ------IPP------W----------------------------TITLPETQLLLKEKKT 75
IP W TI++P L LK K
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK-- 438
Query: 76 NISPNEIKSKFNQLLNKVNRKETFYCDGSKSPQHCGSAFVHEGNTITFKLPNISSSYTAE 135
+ +++ N +TF D P + H I L NI E
Sbjct: 439 ---LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH----IGHHLKNIEH---PE 488
Query: 136 IIALQKCI----QFITQNKKIKPETQYWPTSSRQKRIEEVIIARLRIGHTRVSHSYLIDK 191
+ L + + +F+ Q KI+ ++ W S + +L+ Y+ D
Sbjct: 489 RMTLFRMVFLDFRFLEQ--KIRHDSTAWNASGSILN----TLQQLKF-----YKPYICDN 537
Query: 192 KP---RPICDTCHTPLSVAHILIEC 213
P R + + LI
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICS 562
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 1.1
Identities = 32/224 (14%), Positives = 62/224 (27%), Gaps = 69/224 (30%)
Query: 62 TLPETQLLLKEKKTNISPNEIKSKFNQLLNKVNRKETFYCDGSKSPQHCGS--------- 112
LPE +P E+ KF L Y P G
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVGKF---LG--------YVSSLVEPSKVGQFDQVLNLCL 88
Query: 113 -AF---------VHEGNTITFKLPNISSSYTAEIIALQKCIQ--FITQNKKIKPETQYWP 160
F +H + KL + ++ ++ I+ + +P +
Sbjct: 89 TEFENCYLEGNDIH---ALAAKLLQEN---DTTLVKTKELIKNYITARIMAKRPFDK--K 140
Query: 161 TSSRQKRIEEVIIARLRIGHTRV---------SHSYL-----IDKKPRPICDTCHTPL-- 204
++S + + G+ ++ + Y + + + L
Sbjct: 141 SNSA-------LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG----DLIK 189
Query: 205 SVAHILIECTKFQVERQKLLPHPLTLENLLGNNKETIDSTLKYL 248
A L E + ++ +K+ L + L N T D YL
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD--YL 231
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 28.7 bits (64), Expect = 1.1
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 98 TFYCDGSKS----PQHCGSAFVHEGNTITFK-LPNISSSYTAEIIALQKCIQFIT-QNKK 151
T+Y DGS + G+A E I + LP +S+ AE+IAL + ++ +
Sbjct: 25 TWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAEGKKLN 84
Query: 152 IKPETQY-WPTSSRQKRIEEVIIARL 176
+ +++Y + T+ E+
Sbjct: 85 VYTDSRYAFATAHVHSEGREIKNKNE 110
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A
{Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A
1orb_A 2ora_A 1dp2_A* 1rhd_A
Length = 296
Score = 28.4 bits (64), Expect = 2.6
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 13/55 (23%)
Query: 55 SIP-----PWTITLPETQLLLKEKKTNISPNEIKSKFNQLLNKVNRKETFYCDGS 104
I P+ L E SP E+++ F + + C
Sbjct: 203 HIRGSVNMPFM-------NFLTEDGFEKSPEELRAMFEAKKVDLTKPLIATC-RK 249
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics,
structural genomics consortium, SGC, RH fold; 2.50A
{Homo sapiens}
Length = 302
Score = 28.0 bits (63), Expect = 2.6
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 13/55 (23%)
Query: 55 SIP-----PWTITLPETQLLLKEKKTNISPNEIKSKFNQLLNKVNRKETFYCDGS 104
IP P+T L ++ SP EI+ F + +++ C GS
Sbjct: 217 HIPGTVNIPFT-------DFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATC-GS 263
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 26.2 bits (57), Expect = 8.9
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 8/49 (16%)
Query: 119 NTITFKLPNISSSYTAEIIALQKCIQFITQNKKIKPETQ--YWPTSSRQ 165
I +LP EI+ + + + + +W S+
Sbjct: 172 ENIAIELPP------NEILFSENNDMDNNNDGVDELNKKCTFWDAISKL 214
>3ed4_A Arylsulfatase; structural genomics, PSI-2, protein structure INI
NEW YORK structural genomix research consortium,
NYSGXRC, transferase; 1.70A {Escherichia coli}
Length = 502
Score = 26.5 bits (59), Expect = 9.0
Identities = 4/23 (17%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 132 YTAEIIALQKCIQFITQNKKIKP 154
+ E ++ + + ++ K KP
Sbjct: 195 MSGEYVS-SEVVNWLDNKKDSKP 216
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.396
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,719,996
Number of extensions: 200313
Number of successful extensions: 429
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 12
Length of query: 257
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 165
Effective length of database: 4,133,061
Effective search space: 681955065
Effective search space used: 681955065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.0 bits)