RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16958
         (257 letters)



>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 33.0 bits (74), Expect = 0.012
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 97  ETFYCDGSKS--PQHCGSAFVHEGNTITFKLPNISSSYTAEIIALQKCIQFITQNKKIKP 154
           ETFY DGS +   +   + +V +      K    +++  AE+ A    +        I  
Sbjct: 8   ETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQAELEAFAMALTDSGPKVNIIV 67

Query: 155 ETQY-------WPTSSRQKRIEEVIIARLRIGHTRVSH 185
           ++QY        PT S  K + ++I   ++     V+ 
Sbjct: 68  DSQYVMGIVASQPTESESKIVNQIIEEMIKKEAIYVAW 105


>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 1
           [TaxId: 11676]}
          Length = 110

 Score = 29.6 bits (66), Expect = 0.12
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 97  ETFYCDGS--KSPQHCGSAFVHEGNTITFKLPNISSSYTAEIIALQKCIQFITQNKKIKP 154
           ETFY DG+  +  +   + +V             +++   E+ A+   +Q       I  
Sbjct: 9   ETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVT 68

Query: 155 ETQY-------WPTSSRQKRIEEVI 172
           ++QY        P  S  + + ++I
Sbjct: 69  DSQYALGIIQAQPDQSESELVNQII 93


>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE
          {Escherichia coli [TaxId: 562]}
          Length = 267

 Score = 27.2 bits (60), Expect = 1.9
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 66 TQLLLKEKKTNISPNEIKSKFNQLLNKVNRKETF 99
          T+L + +    I   E  + F +    V+  E +
Sbjct: 24 TKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 57


>d1pzwa_ g.39.1.10 (A:) Transcription factor grauzone Cg33133-Pa,
           zinc finger associated domain {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 80

 Score = 24.3 bits (52), Expect = 7.0
 Identities = 7/31 (22%), Positives = 11/31 (35%)

Query: 195 PICDTCHTPLSVAHILIECTKFQVERQKLLP 225
            I D       VA +L +   F+V     + 
Sbjct: 18  QIFDVDSGESKVAEVLRQHFWFEVLPNDEIS 48


>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
          carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 363

 Score = 25.2 bits (55), Expect = 8.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 47 TNTAYMKQSIPPWTITL 63
          TN A M  S+P W +  
Sbjct: 32 TNLAMMNPSLPGWKVEC 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.396 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 943,405
Number of extensions: 42398
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 12
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)