BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16959
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 48/54 (88%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
GAT+RNE D+VI+ R+VKGG A+++GLLHEGDE+LEINGIEIRGK ++ V D+L
Sbjct: 40 GATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLL 93
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 15/101 (14%)
Query: 87 EILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMED-----SDRFAAAIPHTSRP 141
++L+YE V+ N RP++++GP ++ R+ +D D+F + +PHT+RP
Sbjct: 91 KVLSYEPVN--QQEVNYTRPVIILGP-------MKDRVNDDLISEFPDKFGSCVPHTTRP 141
Query: 142 MKDGEVDGQDYHFIT-RAQFELDILARKFIEHGEYEKSYYG 181
+D EVDG+DYHF+T R Q E DI KFIE G+Y YG
Sbjct: 142 KRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYG 182
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR---EG 290
S S ++V A FDYD D +P + G++F+ GDILHVI+ D WWQA + +G
Sbjct: 4 SEFSQKRSLYVRALFDYDKTKDSGLPSQ--GLNFKFGDILHVINASDDEWWQARQVTPDG 61
Query: 291 EEDHT 295
E D
Sbjct: 62 ESDEV 66
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQK 349
G+ ++ L GTS+ ++R V GK C+L++ ++K L+ + L P IF+ P E + +
Sbjct: 174 GQYNNHLYGTSVQSVRAVAEKGKHCILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEM 233
Query: 350 RIRRGD 355
R D
Sbjct: 234 NKRLTD 239
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 11/100 (11%)
Query: 86 DEILTYEEVS---LYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142
D +L+YE V+ ++Y RPI+++GP ++ L E D+F + +PHT+RP
Sbjct: 515 DSVLSYETVTQMEVHY-----ARPIIILGPTKDRAND--DLLSEFPDKFGSCVPHTTRPK 567
Query: 143 KDGEVDGQDYHFI-TRAQFELDILARKFIEHGEYEKSYYG 181
++ E+DG+DYHF+ +R + E DI A KFIE G+Y YG
Sbjct: 568 REYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYG 607
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288
G ++ A FDYD D + L SF+ GD+LHVI D WWQA R
Sbjct: 427 GFYIRALFDYDKTKDCGFLSQAL--SFRFGDVLHVIDAGDEEWWQARR 472
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFE--LLK 347
G+ + L GTS+ ++R V GK C+L++ +++ L+++ L P IF+ P E L
Sbjct: 599 GQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEI 658
Query: 348 QKRI 351
KRI
Sbjct: 659 NKRI 662
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+G+ + + ++ GG AD +G L +GD+IL +NG+++R S H I + GQ +T+
Sbjct: 329 DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS-HEQAAIALKNAGQTVTI 385
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGI 40
+++ V ++++GG A + G L GD+IL +N +
Sbjct: 184 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 215
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 11/100 (11%)
Query: 86 DEILTYEEVS---LYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142
D +L+YE V+ ++Y R PI+++GP ++ L E D+F + +PHT+RP
Sbjct: 95 DSVLSYETVTQMEVHYAR-----PIIILGPTKDRAND--DLLSEFPDKFGSCVPHTTRPK 147
Query: 143 KDGEVDGQDYHFI-TRAQFELDILARKFIEHGEYEKSYYG 181
++ E+DG+DYHF+ +R + E DI A KFIE G+Y YG
Sbjct: 148 REYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYG 187
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288
G ++ A FDYD D + +SF+ GD+LHVI D WWQA R
Sbjct: 5 ASGFYIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARR 52
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFE--LLK 347
G+ + L GTS+ ++R V GK C+L++ +++ L+++ L P IF+ P E L
Sbjct: 179 GQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEI 238
Query: 348 QKRI 351
KRI
Sbjct: 239 NKRI 242
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 11/100 (11%)
Query: 86 DEILTYEEVS---LYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142
D +L+YE V+ ++Y R PI+++GP ++ L E D+F + +PHT+RP
Sbjct: 89 DSVLSYETVTQMEVHYAR-----PIIILGPTKDRAND--DLLSEFPDKFGSCVPHTTRPK 141
Query: 143 KDGEVDGQDYHFI-TRAQFELDILARKFIEHGEYEKSYYG 181
++ E+DG+DYHF+ +R + E DI A KFIE G+Y YG
Sbjct: 142 REYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYG 181
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFE 344
G+ + L GTS+ ++R V GK C+L++ +++ L+++ L P IF+ P E
Sbjct: 173 GQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLE 227
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288
G ++ A FDYD D + +SF+ GD+LHVI D WWQA R
Sbjct: 1 GFYIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARR 46
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 15/102 (14%)
Query: 86 DEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMED-----SDRFAAAIPHTSR 140
+ +L+YE V N RP++++GP L+ R+ +D D+F + +PHT+R
Sbjct: 84 ENVLSYEAVQRL--SINYTRPVIILGP-------LKDRINDDLISEYPDKFGSCVPHTTR 134
Query: 141 PMKDGEVDGQDYHFI-TRAQFELDILARKFIEHGEYEKSYYG 181
P ++ EVDG+DYHF+ +R Q E DI FIE G+Y + YG
Sbjct: 135 PKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYG 176
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288
++V A FDYDP D +P + G+ F+ GDILHV + D WWQA R
Sbjct: 5 SLYVRALFDYDPNRDDGLPSR--GLPFKHGDILHVTNASDDEWWQARR 50
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAP 340
G+ + L GTS+ ++R V GK C+L++ ++K L+ + L P +F+ P
Sbjct: 168 GQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKP 218
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 105 RPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163
RP+VL GP G+ L ++L ++ S F ++ HT+R + GE DG+DY+F+TR + D
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64
Query: 164 ILARKFIEHGEYEKSYYG 181
I A FIEH E+ + YG
Sbjct: 65 IAAGDFIEHAEFSGNLYG 82
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 296 LAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQK-RIR 352
L GTS +A+R V +ICVL++ Q ++ ++ +DL P IFV PP ++L+Q+ R+R
Sbjct: 80 LYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLR 137
>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|B Chain B, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|C Chain C, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|D Chain D, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
Length = 207
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 107 IVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDIL 165
IVL GP +G+ +R+R+ ED S + +I T+R M++GEVDG DY F TR FE I
Sbjct: 9 IVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIK 68
Query: 166 ARKFIEHGEYEKSYYG 181
+FIE+ EY +YYG
Sbjct: 69 DDQFIEYAEYVGNYYG 84
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG 354
GT + ++ ++ G L + + K +R IF+APP E L+++ + RG
Sbjct: 84 GTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRG 140
>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of
Human Cask
Length = 180
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Query: 101 SNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQ 159
S+ ++ +VL+G +GR ++ L+ + DRFA IPHT+RP K E +G++Y+F++ Q
Sbjct: 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQ 61
Query: 160 FELDILARKFIEHGEYEKSYYGLRTKLDKLQ 190
DI +++E+G +E + YG TKL+ ++
Sbjct: 62 MMQDISNNEYLEYGSHEDAMYG--TKLETIR 90
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPP 341
G + + GT L+ IR + G I +L++ PQ+LK+LR+++ PFV+F+A P
Sbjct: 75 GSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAP 126
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 95 SLYYPRSNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYH 153
+LY+ + + RPIV+ GP G+ L ++L E D F ++P T+R + GEV+G+DY+
Sbjct: 9 NLYF-QGSMSRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGEVNGKDYN 67
Query: 154 FITRAQFELDILARKFIEHGEYEKSYYG 181
F++ +F+ I +FIE ++ +YYG
Sbjct: 68 FVSVDEFKSMIKNNEFIEWAQFSGNYYG 95
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRS-SDLKPFVIFVAPPPFELLKQKRIRRGD- 355
G+++ +++ V +GK C+L++ Q +K +++ +L +F+APP E LK++ RG
Sbjct: 95 GSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTE 154
Query: 356 -----NFKTGTAQAQ 365
N + AQA+
Sbjct: 155 TEESINKRLSAAQAE 169
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 104 KRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFEL 162
++ +VLIG +GR ++ L+ ++ ++F +P+T+RP + E DG++YHFI+ +
Sbjct: 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTR 78
Query: 163 DILARKFIEHGEYEKSYYGLR 183
+I A +F+E G Y+ + +G +
Sbjct: 79 NISANEFLEFGSYQGNMFGTK 99
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%)
Query: 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAP 340
G + GT + + + KI +L++ PQ+LKI+R+++L PF++F+AP
Sbjct: 89 GSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAP 139
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 105 RPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163
RPIV+ GP G+ L ++L E D F ++ T+R + GEV+G+DY+F++ +F+
Sbjct: 3 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 62
Query: 164 ILARKFIEHGEYEKSYYG 181
I +FIE ++ +YYG
Sbjct: 63 IKNNEFIEWAQFSGNYYG 80
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRS-SDLKPFVIFVAPPPFELLKQKRIRRGD- 355
G+++ +++ V +GK C+L++ Q +K +++ +L +F+APP E LK++ RG
Sbjct: 80 GSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTE 139
Query: 356 -----NFKTGTAQAQ 365
N + AQA+
Sbjct: 140 TEESINKRLSAAQAE 154
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 105 RPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163
RPIV+ GP G+ L ++L E D F ++ T+R + GEV+G+DY+F++ +F+
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61
Query: 164 ILARKFIEHGEYEKSYYG 181
I +FIE ++ +YYG
Sbjct: 62 IKNNEFIEWAQFSGNYYG 79
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRS-SDLKPFVIFVAPPPFELLKQKRIRRGD- 355
G+++ +++ V +GK C+L++ Q +K +++ +L +F+APP E LK++ RG
Sbjct: 79 GSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTE 138
Query: 356 -----NFKTGTAQAQ 365
N + AQA+
Sbjct: 139 TEESINKRLSAAQAE 153
>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
pdb|3TAU|B Chain B, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
Length = 208
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 107 IVLIGPPNIGRHELRQRLMEDSD-RFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDIL 165
IVL GP +G+ +R+ + +D + F +I T+R ++GE DG DY+F +R FE I
Sbjct: 11 IVLSGPSGVGKGTVREAVFKDPETSFDYSISXTTRLPREGEQDGVDYYFRSREVFEQAIK 70
Query: 166 ARKFIEHGEYEKSYYG--LRTKLDKLQAGI 193
K +E+ EY +YYG L +KL AG+
Sbjct: 71 DGKXLEYAEYVGNYYGTPLEYVEEKLAAGV 100
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG 354
GT L+ + + AG L + Q +R + + IF+ PP LK + I RG
Sbjct: 86 GTPLEYVEEKLAAGVDIFLEIEVQGAXQVRKAXPEGIFIFLTPPDLSELKNRIIGRG 142
>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium
Falciparum
Length = 218
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 99 PRS--NEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFI 155
PR N P+V+ GP +G+ L ++L+ E + F ++ T+R ++ E +G DY+FI
Sbjct: 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFI 75
Query: 156 TRAQFELDILARKFIEHGEYEKSYYG-LRTKLDK 188
+ FE + F+E+ Y ++YG L+++ DK
Sbjct: 76 DKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDK 109
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 106 PIVLIGPPNIGRHEL-RQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164
P+V+ GP +G+ L ++ L E RF +I T+R ++ E +G DY+F+ + FE +
Sbjct: 14 PLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL 73
Query: 165 LARKFIEHGEYEKSYYG-LRTKLD 187
+F+E +Y ++YG L+++ D
Sbjct: 74 KEGQFLEFDKYANNFYGTLKSEYD 97
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56
+ + R+V GGLA TGLL DE+LE+NGIE+ GKS+ V D+++
Sbjct: 66 GIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIA 112
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 52.0 bits (123), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56
+ + R+V GGLA+ TGLL DE++E+NGIE+ GK++ V D++V
Sbjct: 39 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVA 85
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 52.0 bits (123), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56
+ + R+V GGLA+ TGLL DE++E+NGIE+ GK++ V D++V
Sbjct: 41 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVA 87
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56
+ + R+V GGLA+ TGLL DE++E+NGIE+ GK++ V D++V
Sbjct: 67 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVA 113
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56
+ + R+V GGLA+ TGLL DE++E+NGIE+ GK++ V D++V
Sbjct: 67 GIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVA 113
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1 GATIRN--EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
GATI+ + A+IV R+ +GG ADR+GL+H GDE+ E+NGI + K + IL
Sbjct: 18 GATIKKDEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQIL 73
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 48.5 bits (114), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 7/52 (13%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
G +V A FD+DP++D ELG F++GD +HV+ DPNWW+ G+
Sbjct: 1 GSTYVQALFDFDPQED-----GELG--FRRGDFIHVMDNSDPNWWKGACHGQ 45
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 107 IVLIGPPNIGRHELRQRLME-DSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDIL 165
+VL P G+ + +L+E + ++ T+R + GE +G+DY+F+ R +F
Sbjct: 30 LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89
Query: 166 ARKFIEHGEYEKSYYGL-RTKL-DKLQAGIPTL 196
+ IEH E ++YG+ R L D + G+ TL
Sbjct: 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTL 122
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 48.1 bits (113), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 7/52 (13%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
G +V A FD+DP++D ELG F++GD +HV+ DPNWW+ G+
Sbjct: 1 GSTYVQALFDFDPQED-----GELG--FRRGDFIHVMDNSDPNWWKGACHGQ 45
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 7/52 (13%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
G +V A FD+DP++D ELG F++GD +HV+ DPNWW+ G+
Sbjct: 1 GPTYVQALFDFDPQED-----GELG--FRRGDFIHVMDNSDPNWWKGACHGQ 45
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii
Length = 205
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 102 NEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFE 161
N+ ++ P G+ L + L++ +I HT+RP + G+ +G DY FI +F+
Sbjct: 5 NKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQ 64
Query: 162 LDILARKFIEHGEYEKSYYGLRTK--LDKLQAG 192
+ F+EH + +YG L +L+AG
Sbjct: 65 AXVKEGAFLEHATIYERHYGTEKDWVLRQLKAG 97
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRR 353
GT D + + AG+ +L + Q + +R IF+ PP E L+++ I+R
Sbjct: 84 GTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKR 139
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
V A FD+DP++D ELG F++GD +HV+ DPNWW+ G+
Sbjct: 3 VQALFDFDPQED-----GELG--FRRGDFIHVMDNSDPNWWKGACHGQ 43
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 1 GATIR-NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
G T++ NE + IV R++ GG+ R G LH GDEI EINGI + +++ + +L + G
Sbjct: 16 GITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG 75
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 1 GATIR-NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSI 47
G T++ NE + V R++ GG+ R G LH GDEILEING + S+
Sbjct: 27 GITLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSV 74
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 6 NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSI 47
NE + V R++ GG+ R G LH GDEILEING + S+
Sbjct: 33 NEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSV 74
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
D +I+ + KGGLA+RTG +H GD IL IN ++GK + +L + G+ +T+
Sbjct: 30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTL 84
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 7/49 (14%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
+V A FD+DP++D ELG F++GD +HV+ DPNWW+ G+
Sbjct: 160 YVQALFDFDPQED-----GELG--FRRGDFIHVMDNSDPNWWKGACHGQ 201
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 8/52 (15%)
Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD-DPNWWQAYREGEE 292
M IA +D+ D EL SF++GDIL V++++ D NW++A G++
Sbjct: 1 MEAIAKYDFKATAD-----DEL--SFKRGDILKVLNEECDQNWYKAELNGKD 45
>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
pdb|1S96|B Chain B, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
Length = 219
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 108 VLIGPPNIGRHELRQRLMEDSDRF--AAAIPHTSRPMKDGEVDGQDYHFITRAQFELDIL 165
++ P G+ L Q L++ + ++ HT+R + GEV G+ Y F+ +F+ I
Sbjct: 20 IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEXIS 79
Query: 166 ARKFIEHGEYEKSYYG 181
F+EH E +YYG
Sbjct: 80 RDAFLEHAEVFGNYYG 95
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164
R +VL GP +G+ + + L E ++ T+R + GEVDG DYHFI +F+ I
Sbjct: 21 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI 80
Query: 165 LARKFIEHGEYEKSYYGLRTKLDKLQA----GIPTL 196
+ +E E + T ++A G+P L
Sbjct: 81 DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVL 116
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164
R +VL GP +G+ + + L E ++ T+R + GEVDG DYHFI +F+ I
Sbjct: 24 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI 83
Query: 165 LARKFIEHGEYEKSYYGLRTKLDKLQA----GIPTL 196
+ +E E + T ++A G+P L
Sbjct: 84 DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVL 119
>pdb|2E7K|A Chain A, Solution Structure Of The Pdz Domain From Human Maguk
P55 Subfamily Member 2
Length = 91
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEING 39
G T R EG +++ R++ GG+ + GLLH GD I E+NG
Sbjct: 21 GVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNG 59
>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
Mycobacterium Tuberculosis (Rv1389)
Length = 228
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164
R +VL GP +G+ + + L E ++ T+R + GEVDG DYHFI +F+ I
Sbjct: 24 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRCPRPGEVDGVDYHFIDPTRFQQLI 83
Query: 165 LARKFIEHGEYEKSYYGLRTKLDKLQA----GIPTL 196
+ +E E + T ++A G+P L
Sbjct: 84 DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVL 119
>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2AN9|B Chain B, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2ANB|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gmp
pdb|2ANC|A Chain A, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|B Chain B, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|C Chain C, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|D Chain D, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|E Chain E, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|F Chain F, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2F3R|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3R|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3T|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|C Chain C, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|D Chain D, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|E Chain E, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|F Chain F, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
Length = 207
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 108 VLIGPPNIGRHELRQRLMEDSDRF--AAAIPHTSRPMKDGEVDGQDYHFITRAQFELDIL 165
++ P G+ L Q L++ + ++ HT+R + GEV G+ Y F+ +F+ I
Sbjct: 8 IVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMIS 67
Query: 166 ARKFIEHGEYEKSYYG 181
F+EH E +YYG
Sbjct: 68 RDAFLEHAEVFGNYYG 83
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+G+ + V ++ GG AD +G L GD+IL +NGI++RG S L G GQ +T+
Sbjct: 25 DGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKG-AGQTVTI 81
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
G VIA +DY + E +SF KG +++V+++DDP+WWQ G
Sbjct: 18 GCQVIAMYDYAANN-------EDELSFSKGQLINVMNKDDPDWWQGEING 60
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
+ + + + RV+ GG+ADR G L GD++L +NG+ + G+ ++L G
Sbjct: 26 KEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQG 80
>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 103
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
G +++G V+ G ADR G LH GDE++ ++GI + GK+ V D++
Sbjct: 33 GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLM 79
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Inad- Like Protein
Length = 111
Score = 41.6 bits (96), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
V+V +V GGLADR G L GD IL+I G ++G + V +L
Sbjct: 39 GVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVL 83
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 7/43 (16%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
V A FD++P++ ++F++GD++ +I++DDPNWW+
Sbjct: 5 VQALFDFNPQESGE-------LAFKRGDVITLINKDDPNWWEG 40
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
RN+ V V +VKGG+AD G L +GD+IL +NG ++R + V +L
Sbjct: 26 RND-TGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALL 74
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 7/43 (16%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
V A FD++P++ ++F++GD++ +I++DDPNWW+
Sbjct: 5 VQALFDFNPQESGE-------LAFKRGDVITLINKDDPNWWEG 40
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 1 GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEI 42
G+T GDA + V R+ +GG A R G L GD +L ING+++
Sbjct: 29 GSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDV 71
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 7/43 (16%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
V A FD++P++ ++F++GD++ +I++DDPNWW+
Sbjct: 7 VQALFDFNPQESGE-------LAFKRGDVITLINKDDPNWWEG 42
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
VIA +DY + E +SF KG +++V+++DDP+WWQ G
Sbjct: 36 QVIAMYDYAANN-------EDELSFSKGQLINVMNKDDPDWWQGEING 76
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+G+ + + ++ GG AD +G L +GD+IL +NG+++R S H I + GQ +T+
Sbjct: 36 DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS-HEQAAIALKNAGQTVTI 92
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+G+ + + ++ GG AD +G L +GD+IL +NG+++R S H I + GQ +T+
Sbjct: 36 DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS-HEQAAIALKNAGQTVTI 92
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
G+ + + ++ GG AD +G L +GD+IL +NG+++R S H I + GQ +T+
Sbjct: 29 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS-HEQAAIALKNAGQTVTI 84
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
G VI +DY ++D ++F KG I++V++++DP+WW+ G+
Sbjct: 1 GSCQVIGMYDYTAQNDD-------ELAFSKGQIINVLNKEDPDWWKGEVSGQ 45
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
G+ + + ++ GG AD +G L +GD+IL +NG+++R S H I + GQ +T+
Sbjct: 34 GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS-HEQAAIALKNAGQTVTI 89
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
VI+ ++ GG A+++G L+ GD+I+ ING + G + I+ GL Q
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ 80
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid
Beta A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
VI+ ++ GG A+++G L+ GD+I+ ING + G + I+ GL Q
Sbjct: 35 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ 84
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
GA + N+ + V RV GLA + G + +G+E+L ING ++G + H IL
Sbjct: 36 GADLENK--VITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAIL 87
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 37.4 bits (85), Expect = 0.012, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMGR 66
+G+ + V ++ GG AD +G L GD IL +NG+ +R + H + GQ +T+
Sbjct: 37 DGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLR-NATHEQAAAALKRAGQSVTIVA 95
Query: 67 EAWKTSHAFRHTEHTHFD 84
+ +R E++ F+
Sbjct: 96 Q-------YRPEEYSRFE 106
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
Length = 101
Score = 37.4 bits (85), Expect = 0.013, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
V V+ GG ADR G+ +GD ILE+NG+ + G + V D++
Sbjct: 47 VSAVLPGGAADRAGV-RKGDRILEVNGVNVEGATHKQVVDLI 87
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 37.4 bits (85), Expect = 0.014, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+A+++ V + G A R G L GD+ILE+NG+++R S
Sbjct: 43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSS 80
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 37.4 bits (85), Expect = 0.014, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
V V+ GG ADR G+ +GD ILE+NG+ + G + V D++
Sbjct: 47 VSAVLPGGAADRAGV-RKGDRILEVNGVNVEGATHKQVVDLI 87
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 37.4 bits (85), Expect = 0.014, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
V V+ GG ADR G+ +GD ILE+NG+ + G + V D++
Sbjct: 47 VSAVLPGGAADRAGV-RKGDRILEVNGVNVEGATHKQVVDLI 87
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+G+ + V ++ GG AD +G L GD IL +NG+ +R + H + GQ +T+
Sbjct: 34 DGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLR-NATHEQAAAALKRAGQSVTI 90
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFI 155
+V++G PN+G+ L RL++ A +P +R +K+G V+ F+
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFL 52
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
VI+ ++ GG A R+G L GD+I+ ING + G + I+ GL Q
Sbjct: 218 VILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQ 267
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
R GD +++ + KG +A RTG L GD++L I+ I + S+ IL
Sbjct: 131 RKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQIL 180
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
G+ + +G +V G AD G L GDE++ ++G + GKS +V ++
Sbjct: 26 GEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLM 72
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 35.4 bits (80), Expect = 0.050, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL-TGQEMT 63
+ + + + + RV + G A R G+ GD++LE+NG+ ++G H + L G T +M
Sbjct: 42 KGDDEGIFISRVSEEGPAARAGV-RVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR 100
Query: 64 MGREAWKTS 72
+ RE+ +S
Sbjct: 101 VWRESGPSS 109
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQE 61
VI+ ++ GG A+++G L+ GD+I+ ING + G + I+ GL Q
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQS 81
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
RN+ V++ V GG ADR G + GD +L ++GI + G + H ++ GQE T+
Sbjct: 131 RNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTT-HAEAMSILKQCGQEATL 189
>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of
Hypothetical Kiaa0559 Protein From Human Cdna
Length = 117
Score = 35.4 bits (80), Expect = 0.057, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
+ +++ GG A++TG L EG ++LE NGI + K+ V I+ +G+
Sbjct: 53 IAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGE 100
>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
pdb|2OSG|B Chain B, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
Length = 83
Score = 35.0 bits (79), Expect = 0.065, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEING 39
G + V + + GLA + G LHEGD IL+ING
Sbjct: 20 GSQIFVKEMTRTGLATKDGNLHEGDIILKING 51
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
Length = 97
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
RN+ V++ V GG ADR G + GD +L ++GI + G + H ++ GQE +
Sbjct: 28 RNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTT-HAEAMSILKQCGQEAAL 86
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human
Zona Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human
Zona Occludens-2
Length = 88
Score = 35.0 bits (79), Expect = 0.068, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEING 39
G + V + + GLA + G LHEGD IL+ING
Sbjct: 20 GSQIFVKEMTRTGLATKDGNLHEGDIILKING 51
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 214 DPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDIL 273
+P+L F FN + + Q + GG +A +DY+ E +SF+KG+ L
Sbjct: 59 EPKL-FGGFNSSDTVTSPQRAGPLAGGVTTFVALYDYESRT-------ETDLSFKKGERL 110
Query: 274 HVISQDDPNWWQAY 287
+++ + +WW A+
Sbjct: 111 QIVNNTEGDWWLAH 124
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEV--DGQDYHFITRA 158
+ ++G PN+G+ L ++ + IP T+R D EV DG+ Y F+ A
Sbjct: 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 236
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 34.7 bits (78), Expect = 0.085, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+G+ + + ++ GG AD +G L +GD I+ +N +++R
Sbjct: 26 DGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLR 62
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILV 55
+ +V KG LAD G L GDE+LE NG ++G + V +I++
Sbjct: 66 CAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIIL 111
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 34.7 bits (78), Expect = 0.097, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
GA E + V V +GG A R G + D+I+E++GI + G + + +L G
Sbjct: 32 GADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGN 91
Query: 61 -EMTMGRE 67
+GRE
Sbjct: 92 VRFVIGRE 99
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human
Scrib1
Length = 97
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL-TGQEMT 63
+ + + + + RV + G A R G+ GD++LE+NG+ ++G H + L G T +M
Sbjct: 30 KGDDEGIFISRVSEEGPAARAGV-RVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR 88
Query: 64 MGRE 67
+ RE
Sbjct: 89 VWRE 92
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD-DPNWWQAYREGEE 292
S ++ G M IA +D+ D +SF++GDIL V++++ D NW++A G++
Sbjct: 2 SRRASVGSMEAIAKYDFKATADD-------ELSFKRGDILKVLNEECDQNWYKAELNGKD 54
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
GA E + V V +GG A R G + D+I+E++GI + G + + +L G
Sbjct: 27 GADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGN 86
Query: 61 -EMTMGRE 67
+GRE
Sbjct: 87 VRFVIGRE 94
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILV 55
+ +V KG LAD G L GDE+LE NG + G + V +I++
Sbjct: 58 ITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIIL 100
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILV 55
+ +V KG LAD G L GDE+LE NG + G + V +I++
Sbjct: 58 ITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIIL 100
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMGREAWK 70
+ V ++ G A + G L GD ++E+NG+++ GKS V +L T E T+ ++
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRS-TKMEGTVSLLVFR 99
Query: 71 TSHAFRHTE 79
AF E
Sbjct: 100 QEEAFHPRE 108
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIH 48
A+I+ V + G A + G L GD+ILE+NGI++R K+ H
Sbjct: 31 AIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLR-KATH 68
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 7/46 (15%)
Query: 246 AHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
A +D++PE+D ELG F++GD++ + +Q D NW++ G+
Sbjct: 18 ALYDFEPEND-----GELG--FREGDLITLTNQIDENWYEGXLHGQ 56
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMTMGRE 67
+ V V +GG A R G + D+I+E++GI + G + + +L G +GRE
Sbjct: 112 GIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGRE 170
>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2
Length = 117
Score = 33.1 bits (74), Expect = 0.24, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 3 TIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT 58
++RN+ + + R+ + DR+G LH GD IL I+G + S+ +L ++
Sbjct: 37 SLRNK-SVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASIS 91
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+ G +++ + G ADR G LH GD IL +NG+ +R
Sbjct: 31 KEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 69
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 7/44 (15%)
Query: 248 FDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
+D++PE+ ELG F++GDI+ + +Q D NW++ GE
Sbjct: 10 YDFEPENQ-----GELG--FKEGDIITLTNQIDENWYEGMIHGE 46
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+ G +++ + G ADR G LH GD IL +NG+ +R
Sbjct: 24 KEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 62
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
V+A +DY + KE +SFQ+G I++VI ++D W++ G
Sbjct: 20 VVAIYDYTKD-------KEDELSFQEGAIIYVIKKNDDGWYEGVMNG 59
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+ G +++ + G ADR G LH GD IL +NG+ +R
Sbjct: 49 KEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 87
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 32.3 bits (72), Expect = 0.38, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEING 39
V+V V +GG A+R G + +GDEI+ ING
Sbjct: 45 VVVSAVYEGGAAERHGGVVKGDEIMAING 73
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 32.3 bits (72), Expect = 0.38, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Query: 246 AHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
A +D++PE++ ELG F++GDI+ + +Q D NW++ G
Sbjct: 12 ALYDFEPENE-----GELG--FKEGDIITLTNQIDENWYEGMLHG 49
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ V VVKGG AD G L GD++L ++G + G S
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS 69
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 32.3 bits (72), Expect = 0.42, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 3 TIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
++R+ G + V V+ G A+ G +H+GD +L +NG+ + G +
Sbjct: 29 SVRHGG--IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGAT 70
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 32.3 bits (72), Expect = 0.42, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ V VVKGG AD G L GD++L ++G + G S
Sbjct: 33 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS 69
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery
Of Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 32.3 bits (72), Expect = 0.42, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ V VVKGG AD G L GD++L ++G + G S
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS 75
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With
Ra-Gef2 Peptide
Length = 96
Score = 32.3 bits (72), Expect = 0.42, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 3 TIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
++R+ G + V V+ G A+ G +H+GD +L +NG+ + G +
Sbjct: 29 SVRHGG--IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGAT 70
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 32.3 bits (72), Expect = 0.44, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 3 TIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
++R+ G + V V+ G A+ G +H+GD +L +NG+ + G +
Sbjct: 38 SVRHGG--IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGAT 79
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 32.0 bits (71), Expect = 0.51, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
+ V ++ G A + G L GD ++E+NG+++ GKS V +L
Sbjct: 35 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLL 78
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 32.0 bits (71), Expect = 0.52, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 3 TIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
++R+ G + V ++ G A+ G +H+GD +L +NG+ + G +
Sbjct: 36 SVRHGG--IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGAT 77
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+G+ + + ++ GG AD +G L +GD I+ +N +++R
Sbjct: 29 DGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLR 65
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
Length = 106
Score = 32.0 bits (71), Expect = 0.54, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ V VVKGG AD G L GD++L ++G + G S
Sbjct: 39 GIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS 75
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEV 147
+V++G PN+G+ L RL+ + IP T+R + E+
Sbjct: 246 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEI 286
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 32.0 bits (71), Expect = 0.57, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
G +V A FD++ D+ +P F+KGDIL + + + WW A
Sbjct: 1 GSAEYVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA 41
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 32.0 bits (71), Expect = 0.57, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 3 TIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
++R+ G + V ++ G A+ G +H+GD +L +NG+ + G +
Sbjct: 28 SVRHGG--IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGAT 69
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 32.0 bits (71), Expect = 0.57, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 3 TIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
++R+ G + V ++ G A+ G +H+GD +L +NG+ + G +
Sbjct: 33 SVRHGG--IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGAT 74
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 32.0 bits (71), Expect = 0.62, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEI 42
+GR++ G ADR L GD IL +NG I
Sbjct: 47 IGRIIDGSPADRCAKLKVGDRILAVNGQSI 76
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+V A FD++ DD +P F+KGDIL + + + WW A
Sbjct: 3 YVRALFDFNGNDDEDLP-------FKKGDILKIRDKPEEQWWNA 39
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 31.6 bits (70), Expect = 0.70, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287
GG +A +DY+ E +SF+KG+ L +++ + +WW A+
Sbjct: 5 GGVTTFVALYDYESR-------TETDLSFKKGERLQIVNNTEGDWWLAH 46
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 31.6 bits (70), Expect = 0.70, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
+ V ++ G A + G L GD ++E+NG+++ GKS V +L
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLL 103
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
G +V A FD++ D+ +P F+KGDIL + + + WW A
Sbjct: 2 GAEYVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA 41
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 31.6 bits (70), Expect = 0.73, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 265 MSFQKGDILHVISQDDPNWWQAYREG 290
+SF KGD++HV ++ WW+ G
Sbjct: 23 LSFSKGDVIHVTRVEEGGWWEGTHNG 48
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 31.6 bits (70), Expect = 0.76, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 13 VGRVVKGGLADRTGLLHEGDEILEING 39
V R+ + G A+R+G + GDEILEING
Sbjct: 53 VLRLAEDGPAERSGKMRIGDEILEING 79
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 7/46 (15%)
Query: 246 AHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
A +D++PE++ ELG F++GDI+ + +Q D NW++ G+
Sbjct: 16 ALYDFEPENE-----GELG--FKEGDIITLTNQIDENWYEGMLHGQ 54
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 31.6 bits (70), Expect = 0.80, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 265 MSFQKGDILHVISQDDPNWWQAYREG 290
+SF KGD++HV ++ WW+ G
Sbjct: 23 LSFSKGDVIHVTRVEEGGWWEGTHNG 48
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 31.6 bits (70), Expect = 0.81, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 265 MSFQKGDILHVISQDDPNWWQAYREG 290
+SF KGD++HV ++ WW+ G
Sbjct: 21 LSFSKGDVIHVTRVEEGGWWEGTHNG 46
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+V A FD++ D+ +P F+KGDIL + + + WW A
Sbjct: 136 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA 172
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+V A FD++ D+ +P F+KGDIL + + + WW A
Sbjct: 138 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA 174
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287
GG +A +DY+ E +SF+KG+ L +++ + +WW A+
Sbjct: 1 GGVTTFVALYDYESRT-------ETDLSFKKGERLQIVNNTEGDWWLAH 42
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEI 42
G + + ++KGG AD GL GDEI+ ING I
Sbjct: 109 GCGLFISHLIKGGQADSVGL-QVGDEIVRINGYSI 142
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 31.2 bits (69), Expect = 0.96, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287
GG +A +DY+ E +SF+KG+ L +++ + +WW A+
Sbjct: 5 GGVTTFVALYDYESR-------TETDLSFKKGERLQIVNNTEGDWWLAH 46
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Query: 265 MSFQKGDILHVIS-QDDPNWWQAYREGEE 292
+SF+KG IL +++ +DD NW++A +G+E
Sbjct: 17 LSFRKGQILKILNMEDDSNWYRAELDGKE 45
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 265 MSFQKGDILHVISQDDPNWWQAYREG 290
+SF KGD++HV ++ WW+ G
Sbjct: 25 LSFSKGDVIHVTRVEEGGWWEGTLNG 50
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+V A FD++ D+ +P F+KGDIL + + + WW A
Sbjct: 16 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA 52
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 265 MSFQKGDILHVISQDDPNWWQA 286
++F+ G+I+ V+ DPNWW+
Sbjct: 34 LTFKAGEIITVLDDSDPNWWKG 55
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+V A FD++ D+ +P F+KGDIL + + + WW A
Sbjct: 136 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA 172
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEIN 38
VI+ +++GG A+++GL+ GD IL +N
Sbjct: 30 VIISDLIRGGAAEQSGLIQAGDIILAVN 57
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated
Peptide
Length = 127
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEIN 38
VI+ +++GG A+++GL+ GD IL +N
Sbjct: 35 VIISDLIRGGAAEQSGLIQAGDIILAVN 62
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEIN 38
VI+ +++GG A+++GL+ GD IL +N
Sbjct: 28 VIISDLIRGGAAEQSGLIQAGDIILAVN 55
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
S S G + F+ D++Y F++GDI+++ D NWW+ +G
Sbjct: 2 SSGSSGKVFRALYTFEPRTPDELY---------FEEGDIIYITDMSDTNWWKGTSKG 49
>pdb|1FC6|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56
G V+V GG A++ G GD I+ ++G ++G S++ V D+L G
Sbjct: 97 SGKDVVVLTPAPGGPAEKAGA-RAGDVIVTVDGTAVKGXSLYDVSDLLQG 145
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287
M +A +DY+ E +SF+KG+ L +++ + +WW A+
Sbjct: 1 MTFVALYDYESR-------TETDLSFKKGERLQIVNNTEGDWWLAH 39
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 16 VVKGGLADRTGLLHEGDEILEINGIEIRGK 45
+ +GG A G L G ILE+NG+ +RGK
Sbjct: 39 IQRGGSAHNCGQLKVGHVILEVNGLTLRGK 68
>pdb|1NM7|A Chain A, Solution Structure Of The Scpex13p Sh3 Domain
Length = 69
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 11/45 (24%)
Query: 246 AHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-----NWWQ 285
A +D+ PE+ E+ ++ +KGD++ ++S+ DP +WW+
Sbjct: 12 ALYDFVPEN------PEMEVALKKGDLMAILSKKDPLGRDSDWWK 50
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 2 ATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+ + E + V +V G +A + GL + GD++LE NGI +R
Sbjct: 35 SIVSGEKGGIYVSKVTVGSIAHQAGLEY-GDQLLEFNGINLR 75
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 265 MSFQKGDILHVISQDDPNWWQAYREG 290
+ F++GDI+++ D NWW+ +G
Sbjct: 20 LYFEEGDIIYITDMSDTNWWKGTSKG 45
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+ V R+ + G A G L EGD+IL +NG +++
Sbjct: 48 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLK 81
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD-DPNWWQAYREGEE 292
M IA D+ D EL SF++GDIL V++++ D NW++A G++
Sbjct: 1 MEAIAKVDFKATAD-----DEL--SFKRGDILKVLNEESDQNWYKAELNGKD 45
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMGR 66
G + V +V +G A+R GL GD+I E+NG+ + ++ +L + M + R
Sbjct: 35 GLGIFVSKVEEGSSAERAGLC-VGDKITEVNGLSLESTTMGSAVKVLTSSSRLHMMVRR 92
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 102
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+ V R+ + G A G L EGD+IL +NG +++
Sbjct: 40 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLK 73
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 48/129 (37%), Gaps = 35/129 (27%)
Query: 90 TYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDG 149
T V + + +E RP++L GPP G+ + T R D EV
Sbjct: 1290 TTRHVDVLHAWLSEHRPLILCGPPGSGK--------------TMTLTSTLRAFPDFEVVS 1335
Query: 150 QDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLT 209
++ T ++L + F H EY+++ G T L Q G WL
Sbjct: 1336 LNFSSATTP----ELLLKTFDHHCEYKRTPSG-ETVLRPTQLG-------------KWLV 1377
Query: 210 ---DEINDP 215
DEIN P
Sbjct: 1378 VFCDEINLP 1386
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 101
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+ V R+ + G A G L EGD+IL +NG +++
Sbjct: 38 GIYVSRIKENGAAALDGRLQEGDKILSVNGQDLK 71
>pdb|1FC7|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FC9|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
pdb|1FCF|A Chain A, Photosystem Ii D1 C-Terminal Processing Protease
Length = 388
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56
G V+V GG A++ G GD I+ ++G ++G S++ V D+L G
Sbjct: 97 SGKDVVVLTPAPGGPAEKAGA-RAGDVIVTVDGTAVKGLSLYDVSDLLQG 145
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287
G +A +DY+ E +SF+KG+ L +++ + +WW A+
Sbjct: 1 GSTTFVALYDYESR-------TETDLSFKKGERLQIVNNTEGDWWLAH 41
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 29/126 (23%)
Query: 90 TYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDG 149
T V + + +E RP++L GPP G+ + T R D EV
Sbjct: 1290 TTRHVDVLHAWLSEHRPLILCGPPGSGK--------------TMTLTSTLRAFPDFEVVS 1335
Query: 150 QDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLT 209
++ T ++L + F H EY+++ G T L Q G + F
Sbjct: 1336 LNFSSATTP----ELLLKTFDHHCEYKRTPSG-ETVLRPTQLGKWLVVF----------C 1380
Query: 210 DEINDP 215
DEIN P
Sbjct: 1381 DEINLP 1386
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGI 40
+++ V ++++GG A + G L GD+IL +N +
Sbjct: 33 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 64
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+V A FD++ D+ +P F+KGDIL + + + WW A
Sbjct: 3 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA 39
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+V A FD++ D+ +P F+KGDIL + + + WW A
Sbjct: 3 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA 39
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 257 YIPCKELGMSFQKGDILHVISQD--DPNWWQAYREGEE 292
Y E ++F++G+I+H+IS++ + WW+ G+E
Sbjct: 15 YTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKE 52
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 15 RVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
R V+ G L GD ++E+NG+ + G++ H V + + GQ
Sbjct: 30 RRVEPGSPAEAAALRAGDRLVEVNGVNVEGETHHQVVQRIKAVEGQ 75
>pdb|2V1R|A Chain A, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
pdb|2V1R|B Chain B, Yeast Pex13 Sh3 Domain Complexed With A Peptide From Pex14
At 2.1 A Resolution
Length = 80
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 11/45 (24%)
Query: 246 AHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-----NWWQ 285
A +D+ PE+ E+ ++ +KGD++ ++S+ DP +WW+
Sbjct: 19 ALYDFVPEN------PEMEVALKKGDLMAILSKKDPLGRDSDWWK 57
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEIN 38
G RNEG V + V+ GG + G L GD+++ IN
Sbjct: 33 GGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSIN 70
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+V A FD++ D+ +P F+KGDIL + + + WW A
Sbjct: 2 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA 38
>pdb|2YT7|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4
Precursor Protein-Binding Family A Member 3
Length = 101
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRG 44
++ ++ GG A+R+G L GD + ING + G
Sbjct: 40 VIANLLHGGPAERSGALSIGDRLTAINGTSLVG 72
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+V A FD++ D+ +P F+KGDIL + + + WW A
Sbjct: 3 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA 39
>pdb|1T0J|A Chain A, Crystal Structure Of A Complex Between Voltage-Gated
Calcium Channel Beta2a Subunit And A Peptide Of The
Alpha1c Subunit
Length = 132
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 253 EDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
EDD+ +P + +SF+ D LHV + + +WW
Sbjct: 62 EDDVPVPG--MAISFEAKDFLHVKEKFNNDWW 91
>pdb|1T3L|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core In Complex With
Alpha1 Interaction Domain
pdb|1T3S|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core
Length = 337
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 253 EDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
EDD+ +P + +SF+ D LHV + + +WW
Sbjct: 52 EDDVPVPG--MAISFEAKDFLHVKEKFNNDWW 81
>pdb|4DEX|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav2.2 I-Ii Linker
Length = 339
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 253 EDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
EDD+ +P + +SF+ D LHV + + +WW
Sbjct: 54 EDDVPVPG--MAISFEAKDFLHVKEKFNNDWW 83
>pdb|4DEY|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav1.2 I-Ii Linker
Length = 337
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 253 EDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
EDD+ +P + +SF+ D LHV + + +WW
Sbjct: 52 EDDVPVPG--MAISFEAKDFLHVKEKFNNDWW 81
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 14/52 (26%)
Query: 239 GGGMHV-IAHFDYDP---EDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
GGG+ + +A +DY+ ED +SF+KG+ +I+ + +WW+A
Sbjct: 2 GGGVTIFVALYDYEARTTED----------LSFKKGERFQIINNTEGDWWEA 43
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/82 (19%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 276 ISQDDPNWWQAYRE-----GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSD 330
+++++P+ +Q + G + + L I+ +++ K +L++ P ++ L +
Sbjct: 241 LAREEPDIYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQ 300
Query: 331 LKPFVIFVAPPPFELLKQKRIR 352
P V+F+ P + +K R+R
Sbjct: 301 WYPIVVFLNPDSKQGVKTMRMR 322
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGK 45
+ + + +A + G + EGD I++INGIE++ +
Sbjct: 49 GIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNR 84
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 29.3 bits (64), Expect = 3.4, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEI 42
+++ V ++++GG A + G L GD++L +N + +
Sbjct: 33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSL 66
>pdb|1JQQ|A Chain A, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|B Chain B, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|C Chain C, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|D Chain D, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1N5Z|A Chain A, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
pdb|1N5Z|B Chain B, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
Length = 92
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 11/46 (23%)
Query: 246 AHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-----NWWQA 286
A +D+ PE+ E+ ++ +KGD++ ++S+ DP +WW+
Sbjct: 19 ALYDFVPEN------PEMEVALKKGDLMAILSKKDPLGRDSDWWKV 58
>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Inad- Like Protein
Length = 129
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
G + E + V V+ G A G + D+I+ ++G+ I+G + H V ++L
Sbjct: 38 GTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVL 91
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/82 (19%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 276 ISQDDPNWWQAYRE-----GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSD 330
+++++P+ +Q + G + + L I+ +++ K +L++ P ++ L +
Sbjct: 249 LAREEPDIYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQ 308
Query: 331 LKPFVIFVAPPPFELLKQKRIR 352
P V+F+ P + +K R+R
Sbjct: 309 WYPIVVFLNPDSKQGVKTMRMR 330
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Query: 209 TDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQ 268
D+ + E G+++ + F ++ + G + A +DY+P++D +P KE
Sbjct: 141 ADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG---VIYALWDYEPQNDDELPMKE------ 191
Query: 269 KGDILHVISQDDPN---WWQA 286
GD + +I ++D + WW A
Sbjct: 192 -GDCMTIIHREDEDEIEWWWA 211
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 245 IAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287
+A +DY+ E +SF+KG+ L +++ + +WW A+
Sbjct: 6 VALYDYESRT-------ETDLSFKKGERLQIVNNTEGDWWLAH 41
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 245 IAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287
+A +DY+ E +SF+KG+ L +++ + +WW A+
Sbjct: 6 VALYDYESRT-------ETDLSFKKGERLQIVNNTEGDWWLAH 41
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGI 40
+++ V ++++GG A + G L GD++L +N +
Sbjct: 41 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 72
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEI 42
+++ V ++++GG A + G L GD++L +N + +
Sbjct: 38 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVAL 71
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGI 40
+++ V ++++GG A + G L GD++L +N +
Sbjct: 33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Query: 209 TDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQ 268
D+ + E G+++ + F ++ + G + A +DY+P++D +P KE
Sbjct: 141 ADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG---VIYALWDYEPQNDDELPMKE------ 191
Query: 269 KGDILHVISQDDPN---WWQA 286
GD + +I ++D + WW A
Sbjct: 192 -GDCMTIIHREDEDEIEWWWA 211
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGI 40
+++ V ++++GG A + G L GD++L +N +
Sbjct: 28 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 59
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 245 IAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287
+A +DY+ E +SF+KG+ L +++ + +WW A+
Sbjct: 6 VALYDYESRT-------ETDLSFKKGERLQIVNNTEGDWWLAH 41
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILA 166
+VL+G P G+ L +R++ED IPH S G + + + L + A
Sbjct: 3 LVLMGLPGAGKGTLGERIVEDY-----GIPHIST--------GDMFRAAMKEETPLGLEA 49
Query: 167 RKFIEHGE 174
+ +I+ GE
Sbjct: 50 KSYIDKGE 57
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human
Inad- Like Protein
Length = 117
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
E + + +V++ A +T L GD+ILE++G++++ S
Sbjct: 48 ELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNAS 87
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGI 40
+++ V ++++GG A + G L GD++L +N +
Sbjct: 29 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 60
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEING 39
+++ ++ KG AD+T L GD IL +NG
Sbjct: 32 ILISKIFKGLAADQTEALFVGDAILSVNG 60
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 6 NEGD-AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
N D + V ++ GG A + G L D+++ +NG + GK+
Sbjct: 35 NHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKA 76
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 6 NEGD-AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
N D + V ++ GG A + G L D+++ +NG + GK+
Sbjct: 32 NHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKA 73
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In
Complex With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEING 39
+++ ++ KG AD+T L GD IL +NG
Sbjct: 28 ILISKIFKGLAADQTEALFVGDAILSVNG 56
>pdb|3LH5|A Chain A, Crystal Structure Of The Sh3-Guanylate Kinase Core Domain
Of Zo-1
Length = 251
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/82 (19%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 276 ISQDDPNWWQAYRE-----GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSD 330
+++++P+ +Q + G + + L I+ +++ K +L++ P ++ L +
Sbjct: 109 LAREEPDIYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQ 168
Query: 331 LKPFVIFVAPPPFELLKQKRIR 352
P V+F+ P + +K R+R
Sbjct: 169 WYPIVVFLNPDSKQGVKTMRMR 190
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 28.9 bits (63), Expect = 4.8, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+++ ++ G AD++ L GD IL +NG ++R
Sbjct: 31 ILISKIFPGLAADQSRALRLGDAILSVNGTDLR 63
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 28.9 bits (63), Expect = 4.9, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGI 40
+++ V ++++GG A + G L GD++L +N +
Sbjct: 39 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNV 70
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 28.9 bits (63), Expect = 4.9, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 11/44 (25%)
Query: 245 IAHFDYDP--EDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+A +DY+ EDD+ SF KG+ +++ + +WW+A
Sbjct: 5 VALYDYEAWTEDDL---------SFHKGEKFQILNSSEGDWWEA 39
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 28.9 bits (63), Expect = 4.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEING 39
+++ ++ KG AD+T L GD IL +NG
Sbjct: 28 ILISKIFKGLAADQTEALFVGDAILSVNG 56
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 28.9 bits (63), Expect = 5.0, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGI 40
+++ V ++++GG A + G L GD++L +N +
Sbjct: 33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
D + V +V +GG A GL GD I+++NG + GK+ V ++
Sbjct: 61 DTIFVKQVKEGGPAFEAGLCT-GDRIIKVNGESVIGKTYSQVIALI 105
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 28.9 bits (63), Expect = 5.2, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 22 ADRTGLLHEGDEILEINGI 40
A+R GLL GD +L INGI
Sbjct: 58 AERCGLLQVGDRVLSINGI 76
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 11/47 (23%)
Query: 246 AHFDYDPE--DDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
A + ++P D++YI ++GDI+++ D NWW+ +G
Sbjct: 19 ALYTFEPRTPDELYI---------EEGDIIYITDXSDTNWWKGTSKG 56
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEING 39
+++ ++ KG AD+T L GD IL +NG
Sbjct: 105 ILISKIFKGLAADQTEALFVGDAILSVNG 133
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
S G A FD+ + +P QKGDI+++ Q D NW++ G
Sbjct: 3 SGSSGRPARAKFDFKAQTLKELP-------LQKGDIVYIYKQIDQNWYEGEHHG 49
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEI 42
+++ V ++++GG A + G L GD++L +N + +
Sbjct: 32 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVAL 65
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 261 KELGMSFQKGDILHVISQDDPNWWQA 286
+E + F++G+ L ++S+ + +WW+A
Sbjct: 160 RETDLPFEQGERLEILSKTNQDWWEA 185
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 96 LYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRF 131
++Y N KR I+L GPP G+ + + +S +
Sbjct: 1040 IFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLY 1075
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 28.5 bits (62), Expect = 6.1, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 11/44 (25%)
Query: 245 IAHFDYDP--EDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+A +DY+ EDD+ SF KG+ +++ + +WW+A
Sbjct: 4 VALYDYEAITEDDL---------SFHKGEKFQILNSSEGDWWEA 38
>pdb|1DJO|A Chain A, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Donv
Covalently Bound In The Active Site
pdb|1DJO|B Chain B, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Donv
Covalently Bound In The Active Site
pdb|1DJP|A Chain A, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Don
Covalently Bound In The Active Site
pdb|1DJP|B Chain B, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Don
Covalently Bound In The Active Site
Length = 330
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 65 GREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSN 102
G+ W A RHT ++ FD+ +I + +V + Y N
Sbjct: 188 GKSYWFRLPAKRHTVNSEFDIKQISSLPQVDIAYSYGN 225
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 96 LYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRF 131
++Y N KR I+L GPP G+ + + +S +
Sbjct: 1259 IFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLY 1294
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 11/44 (25%)
Query: 245 IAHFDYDP--EDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+A +DY+ EDD+ SF KG+ +++ + +WW+A
Sbjct: 19 VALYDYEAITEDDL---------SFHKGEKFQILNSSEGDWWEA 53
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 265 MSFQKGDILHVISQDDPNWWQA 286
++F+ G+++ V+ D NWWQ
Sbjct: 22 LTFKHGELITVLDDSDANWWQG 43
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 265 MSFQKGDILHVIS-QDDPNWWQAYREGEE 292
+SF+K IL +++ +DD NW++A +G+E
Sbjct: 17 LSFRKTQILKILNMEDDSNWYRAELDGKE 45
>pdb|4PGA|A Chain A, Glutaminase-asparaginase From Pseudomonas 7a
pdb|4PGA|B Chain B, Glutaminase-asparaginase From Pseudomonas 7a
Length = 337
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 65 GREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSN 102
G+ W A RHT ++ FD+ +I + +V + Y N
Sbjct: 195 GKSYWFRLPAKRHTVNSEFDIKQISSLPQVDIAYSYGN 232
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 28.5 bits (62), Expect = 6.8, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
V+A +DY + D + + +KGDIL +++ + +WW+
Sbjct: 4 VLALYDYQEKGDSEV-------TMKKGDILTLLNSTNKDWWK 38
>pdb|3PGA|1 Chain 1, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
pdb|3PGA|2 Chain 2, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
pdb|3PGA|3 Chain 3, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
pdb|3PGA|4 Chain 4, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
Length = 337
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 65 GREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSN 102
G+ W A RHT ++ FD+ +I + +V + Y N
Sbjct: 195 GKSYWFRLPAKRHTVNSEFDIKQISSLPQVDIAYSYGN 232
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 11/44 (25%)
Query: 245 IAHFDYDP--EDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+A +DY+ EDD+ SF KG+ +++ + +WW+A
Sbjct: 7 VALYDYEARTEDDL---------SFHKGEKFQILNSSEGDWWEA 41
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 261 KELGMSFQKGDILHVISQDDPNWWQA 286
+E + F++G+ L ++S+ + +WW+A
Sbjct: 131 RETDLPFEQGERLEILSKTNQDWWEA 156
>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|B Chain B, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|C Chain C, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
pdb|2VSP|D Chain D, Crystal Structure Of The Fourth Pdz Domain Of Pdz
Domain- Containing Protein 1
Length = 91
Score = 28.1 bits (61), Expect = 7.2, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM---GREAW 69
+ V KGG AD GL E D I+E+NG+ + + V D + +G+ +T+ G++A
Sbjct: 31 IKEVQKGGPADLAGLEDE-DVIIEVNGVNVLDEPYEKVVD-RIQSSGKNVTLLVCGKKAQ 88
Query: 70 KT 71
T
Sbjct: 89 DT 90
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 11/44 (25%)
Query: 245 IAHFDYDP--EDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+A +DY+ EDD+ SF KG+ +++ + +WW+A
Sbjct: 8 VALYDYEARTEDDL---------SFHKGEKFQILNSSEGDWWEA 42
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 28.1 bits (61), Expect = 8.0, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGI 40
+++ V +V+GG A + G L GD++L +N +
Sbjct: 33 NSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSV 64
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGI 40
+++ V ++++GG A + G L GD+IL +N +
Sbjct: 137 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 168
>pdb|3LFU|A Chain A, Crystal Structure Of E. Coli Uvrd
Length = 647
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-NWWQAYREGEEDHTLAGTS 300
+ +IA+ + D + + G+ + D++ S+D WQA RE ++ LAG +
Sbjct: 395 LRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRA 454
Query: 301 LDAIRTVVN-----AGKICVLNLHPQSLKILRSSDLKPF 334
A++ + A + + LH Q+ ++++ S L+
Sbjct: 455 ASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTM 493
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRG 44
+ + R+ KG ++++ + GDEIL++ G ++G
Sbjct: 59 LTINRIFKGAASEQSETVQPGDEILQLGGTAMQG 92
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 28.1 bits (61), Expect = 8.5, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 265 MSFQKGDILHVISQDDPNWWQAYREGEE 292
+SF DI+ +I +D WW G++
Sbjct: 22 LSFNANDIIDIIKEDPSGWWTGRLRGKQ 49
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 28.1 bits (61), Expect = 8.6, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 257 YIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
Y+P + + + GDI+ V+ + + WW+ G+
Sbjct: 16 YLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGK 50
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 11/44 (25%)
Query: 245 IAHFDYDP--EDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+A +DY+ EDD+ SF KG+ +++ + +WW+A
Sbjct: 19 VALYDYEAWTEDDL---------SFHKGEKFQILNSSEGDWWEA 53
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 28.1 bits (61), Expect = 8.8, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+++ + ++++GG A + G L GD +L +N ++
Sbjct: 33 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQ 67
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGI 40
+++ V ++++GG A + G L GD+IL +N +
Sbjct: 130 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 161
>pdb|2PW0|A Chain A, Crystal Structure Of Trans-Aconitate Bound To
Methylaconitate Isomerase Prpf From Shewanella
Oneidensis
pdb|2PW0|B Chain B, Crystal Structure Of Trans-Aconitate Bound To
Methylaconitate Isomerase Prpf From Shewanella
Oneidensis
Length = 397
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 183 RTKLDKLQAGIPTL--NFDIYALTETWLTDEINDPELGFSKFNVFRS 227
R + AGIPT+ N + T T L D+IN +KF R+
Sbjct: 212 RFNATMINAGIPTIFINAEDLGYTGTELQDDINSDNAALAKFETIRA 258
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGI 40
+++ V ++++GG A + G L GD+IL +N +
Sbjct: 127 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSV 158
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 11/44 (25%)
Query: 245 IAHFDYDP--EDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+A +DY+ EDD+ SF KG+ +++ + +WW+A
Sbjct: 9 VALYDYEARTEDDL---------SFHKGEKFQILNSSEGDWWEA 43
>pdb|2PVZ|A Chain A, Crystal Structure Of Methylaconitate Isomerase Prpf From
Shewanella Oneidensis
pdb|2PVZ|B Chain B, Crystal Structure Of Methylaconitate Isomerase Prpf From
Shewanella Oneidensis
Length = 397
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 183 RTKLDKLQAGIPTL--NFDIYALTETWLTDEINDPELGFSKFNVFRS 227
R + AGIPT+ N + T T L D+IN +KF R+
Sbjct: 212 RFNATMINAGIPTIFINAEDLGYTGTELQDDINSDNAALAKFETIRA 258
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 6 NEGD-AVIVGRVVKGGLADRTGLLHEGDEILEING 39
N G+ + V + +G +A R G L E D+IL ING
Sbjct: 45 NRGELGIFVQEIQEGSVAHRDGRLKETDQILAING 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,941,103
Number of Sequences: 62578
Number of extensions: 534303
Number of successful extensions: 1607
Number of sequences better than 100.0: 273
Number of HSP's better than 100.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 1330
Number of HSP's gapped (non-prelim): 319
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)