Query psy16959
Match_columns 366
No_of_seqs 232 out of 2685
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 18:05:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0609|consensus 100.0 3.5E-43 7.6E-48 347.1 18.3 246 1-365 137-491 (542)
2 PF00625 Guanylate_kin: Guanyl 100.0 2.7E-29 5.8E-34 225.2 12.1 135 104-355 2-137 (183)
3 COG0194 Gmk Guanylate kinase [ 100.0 8.2E-29 1.8E-33 218.4 14.6 139 103-359 3-141 (191)
4 PRK14737 gmk guanylate kinase; 100.0 1.7E-28 3.7E-33 220.9 15.6 143 103-363 3-146 (186)
5 smart00072 GuKc Guanylate kina 100.0 8.2E-28 1.8E-32 215.9 15.3 137 104-357 2-139 (184)
6 PLN02772 guanylate kinase 99.9 4.3E-26 9.3E-31 223.5 15.0 149 91-356 120-271 (398)
7 PRK14729 miaA tRNA delta(2)-is 99.9 6.2E-28 1.3E-32 230.9 1.0 195 104-357 4-211 (300)
8 PRK00091 miaA tRNA delta(2)-is 99.9 6.3E-27 1.4E-31 225.4 1.8 197 103-357 3-213 (307)
9 TIGR00174 miaA tRNA isopenteny 99.9 8.8E-27 1.9E-31 221.8 2.3 194 106-357 1-209 (287)
10 COG0324 MiaA tRNA delta(2)-iso 99.9 9.9E-26 2.1E-30 215.0 0.2 196 104-357 3-214 (308)
11 PLN02840 tRNA dimethylallyltra 99.9 2.6E-25 5.7E-30 220.4 2.7 199 104-359 21-259 (421)
12 PRK14738 gmk guanylate kinase; 99.9 3.6E-23 7.7E-28 189.2 15.4 140 100-356 9-148 (206)
13 KOG3580|consensus 99.9 2.2E-23 4.7E-28 207.2 2.8 339 8-362 218-737 (1027)
14 PLN02748 tRNA dimethylallyltra 99.9 2E-23 4.4E-28 210.2 0.4 198 102-357 20-251 (468)
15 cd00071 GMPK Guanosine monopho 99.8 2.2E-20 4.8E-25 160.1 13.0 119 106-341 1-120 (137)
16 KOG0707|consensus 99.8 2.3E-20 5E-25 169.7 10.2 139 103-358 36-175 (231)
17 KOG0708|consensus 99.8 6.3E-20 1.4E-24 176.3 10.9 142 85-366 170-312 (359)
18 TIGR03263 guanyl_kin guanylate 99.8 1.1E-18 2.5E-23 155.2 14.8 135 105-356 2-136 (180)
19 PRK00300 gmk guanylate kinase; 99.8 4.8E-18 1E-22 154.3 15.0 136 103-355 4-139 (205)
20 PF01715 IPPT: IPP transferase 99.7 7.6E-20 1.7E-24 172.1 -6.3 165 134-356 6-176 (253)
21 PLN02165 adenylate isopentenyl 99.5 2.4E-15 5.2E-20 145.5 1.9 100 103-249 42-151 (334)
22 PRK10078 ribose 1,5-bisphospho 99.4 5.1E-13 1.1E-17 120.0 9.6 75 104-181 2-77 (186)
23 TIGR02322 phosphon_PhnN phosph 99.4 3.1E-12 6.8E-17 113.7 14.0 74 105-181 2-78 (179)
24 KOG1384|consensus 99.2 2.7E-12 5.8E-17 122.3 2.6 100 103-249 6-114 (348)
25 COG3709 Uncharacterized compon 99.2 2.4E-10 5.2E-15 99.0 11.8 91 103-196 4-98 (192)
26 PF00595 PDZ: PDZ domain (Also 99.0 1E-09 2.2E-14 85.0 8.0 63 1-64 13-79 (81)
27 PRK08356 hypothetical protein; 99.0 5.1E-10 1.1E-14 101.3 6.3 75 105-182 6-80 (195)
28 KOG3550|consensus 99.0 1.2E-09 2.6E-14 92.7 6.5 59 6-64 112-170 (207)
29 KOG3580|consensus 98.7 2.2E-08 4.7E-13 101.2 7.7 55 9-64 429-485 (1027)
30 cd00136 PDZ PDZ domain, also c 98.6 1.8E-07 3.9E-12 69.9 8.2 62 1-63 4-67 (70)
31 cd00992 PDZ_signaling PDZ doma 98.5 8E-07 1.7E-11 68.3 8.3 63 1-64 15-80 (82)
32 KOG0609|consensus 98.4 1.2E-07 2.6E-12 95.5 1.8 96 191-292 167-265 (542)
33 smart00228 PDZ Domain present 98.3 3.2E-06 6.9E-11 65.1 8.1 55 9-64 26-80 (85)
34 cd00988 PDZ_CTP_protease PDZ d 98.3 5E-06 1.1E-10 64.5 8.2 59 1-60 5-63 (85)
35 KOG3553|consensus 98.2 9.3E-07 2E-11 70.2 3.3 48 8-56 58-105 (124)
36 KOG3571|consensus 98.2 2.1E-06 4.5E-11 85.8 6.1 68 7-74 275-345 (626)
37 PF13180 PDZ_2: PDZ domain; PD 98.2 8.5E-06 1.8E-10 63.2 7.8 58 1-61 4-64 (82)
38 KOG3209|consensus 98.1 2.3E-06 5E-11 88.3 4.6 52 13-64 782-833 (984)
39 KOG3209|consensus 98.0 7.5E-06 1.6E-10 84.6 6.6 64 1-64 912-978 (984)
40 KOG3549|consensus 98.0 8.4E-06 1.8E-10 78.2 5.1 64 1-64 69-135 (505)
41 cd00227 CPT Chloramphenicol (C 98.0 1.1E-05 2.5E-10 71.5 5.5 58 299-357 73-135 (175)
42 KOG3551|consensus 97.9 6.3E-06 1.4E-10 80.0 3.5 63 1-63 99-164 (506)
43 cd00990 PDZ_glycyl_aminopeptid 97.8 5.5E-05 1.2E-09 57.9 6.8 43 1-44 4-46 (80)
44 COG0793 Prc Periplasmic protea 97.8 4.1E-05 8.9E-10 77.0 7.5 63 1-64 103-166 (406)
45 PRK11186 carboxy-terminal prot 97.7 7.7E-05 1.7E-09 79.1 7.7 64 1-64 247-315 (667)
46 KOG3606|consensus 97.7 6.2E-05 1.3E-09 70.1 5.7 53 9-61 194-246 (358)
47 PHA02530 pseT polynucleotide k 97.7 9.1E-05 2E-09 71.1 7.1 63 302-365 66-136 (300)
48 cd00991 PDZ_archaeal_metallopr 97.7 0.00018 3.8E-09 55.4 7.4 47 8-57 9-55 (79)
49 TIGR00225 prc C-terminal pepti 97.7 0.00015 3.3E-09 71.2 8.2 59 1-60 54-112 (334)
50 KOG1892|consensus 97.6 9.6E-05 2.1E-09 78.7 6.9 56 9-64 960-1015(1629)
51 PRK06762 hypothetical protein; 97.6 0.00037 8.1E-09 60.9 9.0 26 103-128 1-26 (166)
52 PLN00049 carboxyl-terminal pro 97.6 0.00023 5.1E-09 71.3 8.3 52 10-62 103-154 (389)
53 cd00989 PDZ_metalloprotease PD 97.5 0.00031 6.7E-09 53.4 6.8 47 8-57 11-57 (79)
54 cd00987 PDZ_serine_protease PD 97.4 0.00065 1.4E-08 52.8 6.8 54 8-64 23-78 (90)
55 cd00986 PDZ_LON_protease PDZ d 97.4 0.0012 2.5E-08 50.6 8.1 49 4-56 3-51 (79)
56 KOG3651|consensus 97.4 0.00037 8.1E-09 66.0 6.1 54 11-64 32-85 (429)
57 COG0703 AroK Shikimate kinase 97.2 0.00062 1.4E-08 60.4 5.9 54 299-354 84-138 (172)
58 PF07931 CPT: Chloramphenicol 97.2 0.00089 1.9E-08 59.7 6.6 67 299-366 71-142 (174)
59 TIGR03574 selen_PSTK L-seryl-t 97.2 0.0011 2.4E-08 62.1 7.6 63 301-364 58-127 (249)
60 PRK00698 tmk thymidylate kinas 97.2 0.0005 1.1E-08 61.9 4.8 39 104-143 3-41 (205)
61 KOG3605|consensus 97.2 0.00021 4.6E-09 73.6 2.5 53 12-64 676-728 (829)
62 PRK00098 GTPase RsgA; Reviewed 97.1 0.00043 9.3E-09 66.9 4.2 92 104-195 164-278 (298)
63 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.0026 5.6E-08 56.3 8.7 24 106-129 1-24 (183)
64 PLN02200 adenylate kinase fami 97.1 0.0012 2.6E-08 61.6 6.3 42 87-129 27-68 (234)
65 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00099 2.1E-08 59.0 5.5 24 105-128 4-27 (188)
66 PRK14531 adenylate kinase; Pro 97.0 0.0021 4.6E-08 57.4 7.1 26 104-129 2-27 (183)
67 COG1618 Predicted nucleotide k 97.0 0.01 2.2E-07 52.1 10.9 51 300-352 119-173 (179)
68 TIGR01313 therm_gnt_kin carboh 97.0 0.0043 9.4E-08 53.9 8.7 23 107-129 1-23 (163)
69 PRK14530 adenylate kinase; Pro 97.0 0.002 4.3E-08 59.0 6.8 25 105-129 4-28 (215)
70 cd01428 ADK Adenylate kinase ( 96.9 0.0023 5E-08 57.0 6.6 23 107-129 2-24 (194)
71 TIGR01351 adk adenylate kinase 96.9 0.0018 3.9E-08 59.1 5.9 23 107-129 2-24 (210)
72 KOG3938|consensus 96.9 0.00071 1.5E-08 63.1 2.9 59 1-59 140-199 (334)
73 PRK14527 adenylate kinase; Pro 96.9 0.0021 4.5E-08 57.7 6.0 27 103-129 5-31 (191)
74 PRK14529 adenylate kinase; Pro 96.8 0.0063 1.4E-07 56.4 8.6 23 107-129 3-25 (223)
75 KOG3552|consensus 96.8 0.0018 4E-08 69.2 5.5 56 8-65 74-129 (1298)
76 PF13207 AAA_17: AAA domain; P 96.8 0.00081 1.8E-08 55.3 2.3 23 106-128 1-23 (121)
77 cd01672 TMPK Thymidine monopho 96.7 0.0013 2.9E-08 58.4 3.7 23 106-128 2-24 (200)
78 PRK14532 adenylate kinase; Pro 96.7 0.0045 9.8E-08 55.2 7.1 23 107-129 3-25 (188)
79 PF01745 IPT: Isopentenyl tran 96.7 0.0013 2.9E-08 60.2 3.4 53 105-157 2-63 (233)
80 PRK12339 2-phosphoglycerate ki 96.6 0.0087 1.9E-07 54.4 8.3 56 304-359 90-146 (197)
81 KOG3079|consensus 96.6 0.032 7E-07 49.9 11.2 30 100-129 4-33 (195)
82 PRK07261 topology modulation p 96.6 0.0063 1.4E-07 53.9 6.9 22 107-128 3-24 (171)
83 PF14685 Tricorn_PDZ: Tricorn 96.5 0.015 3.3E-07 45.9 8.0 62 1-64 4-74 (88)
84 KOG3542|consensus 96.5 0.0016 3.5E-08 67.5 3.0 50 8-58 561-610 (1283)
85 PRK05057 aroK shikimate kinase 96.5 0.011 2.4E-07 52.4 8.0 25 104-128 4-28 (172)
86 PRK00279 adk adenylate kinase; 96.5 0.0049 1.1E-07 56.4 5.6 23 107-129 3-25 (215)
87 PRK06761 hypothetical protein; 96.5 0.0051 1.1E-07 59.0 5.7 64 104-169 3-68 (282)
88 COG1936 Predicted nucleotide k 96.4 0.017 3.7E-07 51.2 8.3 53 299-357 52-107 (180)
89 TIGR02037 degP_htrA_DO peripla 96.4 0.0076 1.7E-07 61.1 6.7 53 9-64 257-311 (428)
90 PRK13808 adenylate kinase; Pro 96.3 0.0073 1.6E-07 59.2 6.1 23 107-129 3-25 (333)
91 PRK02496 adk adenylate kinase; 96.3 0.0096 2.1E-07 52.9 6.3 22 107-128 4-25 (184)
92 PRK08118 topology modulation p 96.3 0.0063 1.4E-07 53.7 5.1 23 107-129 4-26 (167)
93 PTZ00088 adenylate kinase 1; P 96.3 0.01 2.2E-07 55.2 6.5 23 107-129 9-31 (229)
94 KOG3129|consensus 96.2 0.011 2.4E-07 53.4 5.9 51 10-61 140-191 (231)
95 PLN02674 adenylate kinase 96.1 0.011 2.3E-07 55.7 5.7 25 105-129 32-56 (244)
96 PRK00081 coaE dephospho-CoA ki 96.1 0.07 1.5E-06 48.1 10.8 22 105-126 3-24 (194)
97 PF13671 AAA_33: AAA domain; P 96.1 0.0032 6.9E-08 53.1 1.9 56 301-357 60-122 (143)
98 PF13238 AAA_18: AAA domain; P 96.1 0.0038 8.3E-08 51.3 2.3 22 107-128 1-22 (129)
99 PRK10139 serine endoprotease; 96.1 0.013 2.8E-07 60.1 6.5 53 9-64 390-442 (455)
100 PRK13948 shikimate kinase; Pro 96.0 0.017 3.6E-07 51.9 6.5 26 103-128 9-34 (182)
101 PF03193 DUF258: Protein of un 96.0 0.0063 1.4E-07 53.5 3.4 24 104-127 35-58 (161)
102 COG0563 Adk Adenylate kinase a 96.0 0.0061 1.3E-07 54.5 3.3 22 107-128 3-24 (178)
103 TIGR02037 degP_htrA_DO peripla 95.9 0.015 3.3E-07 58.9 6.5 53 9-64 362-416 (428)
104 PRK00625 shikimate kinase; Pro 95.9 0.028 6.1E-07 50.0 7.4 23 106-128 2-24 (173)
105 COG4619 ABC-type uncharacteriz 95.9 0.013 2.8E-07 52.0 5.1 51 103-165 28-80 (223)
106 PRK10942 serine endoprotease; 95.9 0.019 4.2E-07 59.1 7.1 53 9-64 408-460 (473)
107 PRK13946 shikimate kinase; Pro 95.9 0.023 4.9E-07 50.8 6.7 26 103-128 9-34 (184)
108 KOG3605|consensus 95.9 0.0043 9.3E-08 64.3 2.0 52 12-64 759-810 (829)
109 PRK14526 adenylate kinase; Pro 95.8 0.023 4.9E-07 52.2 6.5 22 107-128 3-24 (211)
110 TIGR00054 RIP metalloprotease 95.8 0.017 3.7E-07 58.5 6.1 47 10-59 204-250 (420)
111 PRK10898 serine endoprotease; 95.7 0.02 4.4E-07 56.7 6.3 44 9-55 279-322 (353)
112 TIGR02038 protease_degS peripl 95.7 0.02 4.4E-07 56.6 6.1 53 9-64 278-332 (351)
113 PLN02924 thymidylate kinase 95.7 0.034 7.3E-07 51.4 7.1 40 103-143 15-54 (220)
114 PRK10139 serine endoprotease; 95.7 0.022 4.7E-07 58.4 6.3 46 8-56 289-334 (455)
115 PLN02459 probable adenylate ki 95.6 0.021 4.6E-07 54.1 5.7 23 107-129 32-54 (261)
116 cd02019 NK Nucleoside/nucleoti 95.6 0.011 2.3E-07 44.3 3.0 23 106-128 1-23 (69)
117 PRK14732 coaE dephospho-CoA ki 95.6 0.19 4.2E-06 45.5 11.8 22 106-127 1-22 (196)
118 PRK10779 zinc metallopeptidase 95.6 0.027 5.9E-07 57.6 6.9 47 10-59 222-268 (449)
119 PF01926 MMR_HSR1: 50S ribosom 95.6 0.0056 1.2E-07 50.0 1.5 36 107-142 2-37 (116)
120 PRK08233 hypothetical protein; 95.6 0.0098 2.1E-07 52.3 3.2 25 105-129 4-28 (182)
121 smart00382 AAA ATPases associa 95.6 0.011 2.3E-07 48.2 3.2 25 104-128 2-26 (148)
122 PRK10942 serine endoprotease; 95.6 0.024 5.1E-07 58.4 6.4 45 9-56 311-355 (473)
123 cd02021 GntK Gluconate kinase 95.5 0.013 2.7E-07 50.2 3.5 24 106-129 1-24 (150)
124 TIGR01713 typeII_sec_gspC gene 95.5 0.029 6.4E-07 53.2 6.0 46 9-57 191-236 (259)
125 TIGR00235 udk uridine kinase. 95.4 0.012 2.5E-07 53.6 3.1 28 101-128 3-30 (207)
126 COG3265 GntK Gluconate kinase 95.4 0.066 1.4E-06 46.4 7.4 57 304-361 60-119 (161)
127 PRK00131 aroK shikimate kinase 95.4 0.013 2.8E-07 50.9 3.2 25 104-128 4-28 (175)
128 COG3975 Predicted protease wit 95.4 0.0075 1.6E-07 61.5 1.8 39 1-40 454-492 (558)
129 PRK06217 hypothetical protein; 95.3 0.016 3.4E-07 51.7 3.5 23 107-129 4-26 (183)
130 PF00448 SRP54: SRP54-type pro 95.3 0.0097 2.1E-07 54.0 2.1 24 104-127 1-24 (196)
131 PRK06547 hypothetical protein; 95.3 0.017 3.7E-07 51.3 3.6 26 103-128 14-39 (172)
132 COG1120 FepC ABC-type cobalami 95.3 0.019 4.1E-07 54.3 4.0 25 103-127 27-51 (258)
133 PLN02199 shikimate kinase 95.2 0.042 9.1E-07 53.0 6.1 26 103-128 101-126 (303)
134 PF07728 AAA_5: AAA domain (dy 95.2 0.015 3.2E-07 49.0 2.7 23 106-128 1-23 (139)
135 PF00004 AAA: ATPase family as 95.1 0.023 4.9E-07 46.8 3.7 23 107-129 1-23 (132)
136 PRK03839 putative kinase; Prov 95.1 0.017 3.6E-07 51.2 2.9 24 106-129 2-25 (180)
137 PRK05480 uridine/cytidine kina 95.0 0.019 4.1E-07 52.2 3.2 26 103-128 5-30 (209)
138 KOG3354|consensus 95.0 0.11 2.3E-06 45.6 7.4 25 104-128 12-36 (191)
139 PRK06696 uridine kinase; Valid 95.0 0.02 4.2E-07 52.8 3.2 27 102-128 20-46 (223)
140 PRK10779 zinc metallopeptidase 95.0 0.031 6.8E-07 57.1 4.9 41 11-54 128-168 (449)
141 TIGR00152 dephospho-CoA kinase 95.0 0.3 6.4E-06 43.6 10.7 23 106-128 1-23 (188)
142 PF13555 AAA_29: P-loop contai 94.9 0.025 5.3E-07 41.7 2.9 21 105-125 24-44 (62)
143 cd00009 AAA The AAA+ (ATPases 94.9 0.025 5.3E-07 46.6 3.3 26 103-128 18-43 (151)
144 cd02020 CMPK Cytidine monophos 94.9 0.022 4.8E-07 48.0 3.0 23 106-128 1-23 (147)
145 COG1219 ClpX ATP-dependent pro 94.9 0.023 5.1E-07 55.0 3.4 35 105-139 98-132 (408)
146 PF00485 PRK: Phosphoribulokin 94.9 0.015 3.3E-07 52.3 2.1 24 106-129 1-24 (194)
147 PF08433 KTI12: Chromatin asso 94.8 0.065 1.4E-06 51.2 6.3 64 301-365 61-133 (270)
148 PRK05541 adenylylsulfate kinas 94.8 0.024 5.3E-07 49.9 3.1 25 103-127 6-30 (176)
149 PHA00729 NTP-binding motif con 94.8 0.032 7E-07 51.7 4.0 55 106-166 19-75 (226)
150 smart00763 AAA_PrkA PrkA AAA d 94.8 0.021 4.6E-07 56.5 2.9 27 103-129 77-103 (361)
151 PTZ00301 uridine kinase; Provi 94.8 0.021 4.5E-07 52.5 2.7 23 105-127 4-26 (210)
152 PF05729 NACHT: NACHT domain 94.7 0.023 5.1E-07 48.5 2.8 23 105-127 1-23 (166)
153 COG1126 GlnQ ABC-type polar am 94.6 0.027 5.9E-07 51.8 3.1 24 103-126 27-50 (240)
154 cd00464 SK Shikimate kinase (S 94.6 0.032 6.9E-07 47.6 3.4 23 106-128 1-23 (154)
155 TIGR01663 PNK-3'Pase polynucle 94.6 0.14 2.9E-06 53.5 8.6 26 102-127 367-392 (526)
156 cd02023 UMPK Uridine monophosp 94.6 0.028 6E-07 50.5 3.1 23 106-128 1-23 (198)
157 PRK14734 coaE dephospho-CoA ki 94.5 0.63 1.4E-05 42.2 11.8 21 106-126 3-23 (200)
158 PF08477 Miro: Miro-like prote 94.5 0.033 7.2E-07 45.2 3.1 22 107-128 2-23 (119)
159 PF13401 AAA_22: AAA domain; P 94.5 0.024 5.1E-07 46.9 2.2 25 103-127 3-27 (131)
160 cd00820 PEPCK_HprK Phosphoenol 94.5 0.031 6.6E-07 45.9 2.8 23 103-125 14-36 (107)
161 cd01895 EngA2 EngA2 subfamily. 94.5 0.036 7.8E-07 47.3 3.4 37 106-142 4-40 (174)
162 COG1136 SalX ABC-type antimicr 94.5 0.032 6.9E-07 51.8 3.1 24 103-126 30-53 (226)
163 COG1162 Predicted GTPases [Gen 94.4 0.026 5.6E-07 54.4 2.6 24 103-126 163-186 (301)
164 COG2256 MGS1 ATPase related to 94.4 0.18 3.8E-06 50.4 8.3 34 106-139 50-83 (436)
165 PRK13975 thymidylate kinase; P 94.4 0.042 9.1E-07 49.1 3.7 26 104-129 2-27 (196)
166 TIGR03279 cyano_FeS_chp putati 94.3 0.028 6.1E-07 56.8 2.7 40 13-55 2-41 (433)
167 PF13173 AAA_14: AAA domain 94.3 0.039 8.4E-07 46.2 3.2 24 104-127 2-25 (128)
168 PRK13947 shikimate kinase; Pro 94.2 0.038 8.3E-07 48.2 2.9 24 106-129 3-26 (171)
169 COG0572 Udk Uridine kinase [Nu 94.1 0.061 1.3E-06 49.6 4.2 25 105-129 9-33 (218)
170 PRK04040 adenylate kinase; Pro 94.1 0.044 9.6E-07 49.3 3.2 25 104-128 2-26 (188)
171 PF07724 AAA_2: AAA domain (Cd 94.1 0.041 8.8E-07 48.9 2.9 23 106-128 5-27 (171)
172 PRK15453 phosphoribulokinase; 94.0 0.069 1.5E-06 51.2 4.5 25 104-128 5-29 (290)
173 TIGR00150 HI0065_YjeE ATPase, 94.0 0.068 1.5E-06 45.5 3.9 26 103-128 21-46 (133)
174 cd02025 PanK Pantothenate kina 93.9 0.045 9.7E-07 50.6 2.9 22 106-127 1-22 (220)
175 COG3839 MalK ABC-type sugar tr 93.9 0.047 1E-06 53.6 3.2 25 102-126 27-51 (338)
176 PRK00889 adenylylsulfate kinas 93.9 0.053 1.1E-06 47.7 3.3 25 103-127 3-27 (175)
177 PRK08154 anaerobic benzoate ca 93.8 0.11 2.3E-06 50.6 5.5 28 101-128 130-157 (309)
178 TIGR00054 RIP metalloprotease 93.8 0.082 1.8E-06 53.6 4.9 52 9-63 128-179 (420)
179 PF00910 RNA_helicase: RNA hel 93.8 0.042 9.2E-07 44.6 2.4 21 107-127 1-21 (107)
180 cd04163 Era Era subfamily. Er 93.8 0.048 1E-06 46.0 2.8 23 105-127 4-26 (168)
181 KOG0745|consensus 93.8 0.055 1.2E-06 54.4 3.5 34 106-139 228-261 (564)
182 PF13191 AAA_16: AAA ATPase do 93.8 0.044 9.4E-07 48.0 2.6 27 101-127 21-47 (185)
183 PRK14528 adenylate kinase; Pro 93.8 0.058 1.3E-06 48.3 3.4 24 106-129 3-26 (186)
184 COG1125 OpuBA ABC-type proline 93.7 0.092 2E-06 49.6 4.6 24 103-126 26-49 (309)
185 PRK09270 nucleoside triphospha 93.7 0.056 1.2E-06 50.0 3.2 26 102-127 31-56 (229)
186 TIGR03499 FlhF flagellar biosy 93.7 0.054 1.2E-06 52.0 3.1 25 103-127 193-217 (282)
187 cd02024 NRK1 Nicotinamide ribo 93.7 0.056 1.2E-06 48.8 3.0 45 309-355 109-153 (187)
188 cd01131 PilT Pilus retraction 93.6 0.053 1.1E-06 49.1 2.9 22 106-127 3-24 (198)
189 PRK03731 aroL shikimate kinase 93.6 0.075 1.6E-06 46.5 3.7 25 105-129 3-27 (171)
190 TIGR00436 era GTP-binding prot 93.6 0.057 1.2E-06 51.2 3.2 36 107-142 3-38 (270)
191 cd02028 UMPK_like Uridine mono 93.6 0.057 1.2E-06 48.1 3.0 23 106-128 1-23 (179)
192 COG1116 TauB ABC-type nitrate/ 93.6 0.12 2.6E-06 48.5 5.2 24 103-126 28-51 (248)
193 PF09439 SRPRB: Signal recogni 93.6 0.053 1.2E-06 48.6 2.7 24 104-127 3-26 (181)
194 PRK09825 idnK D-gluconate kina 93.6 0.06 1.3E-06 47.9 3.1 25 104-128 3-27 (176)
195 PRK06620 hypothetical protein; 93.5 0.065 1.4E-06 49.3 3.3 25 105-129 45-69 (214)
196 PRK10751 molybdopterin-guanine 93.5 0.055 1.2E-06 48.2 2.7 25 103-127 5-29 (173)
197 PF00406 ADK: Adenylate kinase 93.5 0.04 8.7E-07 47.3 1.8 21 109-129 1-21 (151)
198 PF10662 PduV-EutP: Ethanolami 93.5 0.065 1.4E-06 46.2 3.1 22 106-127 3-24 (143)
199 TIGR00017 cmk cytidylate kinas 93.5 0.06 1.3E-06 49.7 3.0 24 105-128 3-26 (217)
200 TIGR02173 cyt_kin_arch cytidyl 93.5 0.063 1.4E-06 46.6 3.0 23 106-128 2-24 (171)
201 COG3840 ThiQ ABC-type thiamine 93.5 0.084 1.8E-06 47.5 3.7 42 103-144 24-70 (231)
202 cd03238 ABC_UvrA The excision 93.5 0.067 1.4E-06 47.7 3.2 24 102-125 19-42 (176)
203 KOG1738|consensus 93.5 0.1 2.2E-06 54.3 4.9 64 1-64 216-280 (638)
204 PRK12289 GTPase RsgA; Reviewed 93.5 0.065 1.4E-06 53.1 3.4 24 104-127 172-195 (352)
205 PRK13949 shikimate kinase; Pro 93.4 0.073 1.6E-06 47.0 3.4 25 105-129 2-26 (169)
206 COG1419 FlhF Flagellar GTP-bin 93.4 0.057 1.2E-06 54.0 2.9 25 103-127 202-226 (407)
207 TIGR03420 DnaA_homol_Hda DnaA 93.4 0.065 1.4E-06 48.8 3.1 26 102-127 36-61 (226)
208 PRK03846 adenylylsulfate kinas 93.4 0.07 1.5E-06 48.2 3.2 27 101-127 21-47 (198)
209 PRK04182 cytidylate kinase; Pr 93.4 0.066 1.4E-06 46.8 3.0 23 106-128 2-24 (180)
210 COG1127 Ttg2A ABC-type transpo 93.4 0.15 3.2E-06 47.7 5.4 54 103-168 33-88 (263)
211 COG1102 Cmk Cytidylate kinase 93.4 0.067 1.5E-06 47.1 2.9 24 106-129 2-25 (179)
212 cd01130 VirB11-like_ATPase Typ 93.4 0.069 1.5E-06 47.7 3.1 25 103-127 24-48 (186)
213 TIGR02860 spore_IV_B stage IV 93.3 0.29 6.2E-06 49.2 7.7 53 5-60 101-161 (402)
214 PF05496 RuvB_N: Holliday junc 93.3 0.081 1.8E-06 49.1 3.6 25 105-129 51-75 (233)
215 PF00005 ABC_tran: ABC transpo 93.3 0.059 1.3E-06 45.1 2.5 25 103-127 10-34 (137)
216 cd02027 APSK Adenosine 5'-phos 93.3 0.072 1.5E-06 46.0 3.0 23 106-128 1-23 (149)
217 COG4088 Predicted nucleotide k 93.3 0.046 1E-06 50.0 1.8 24 105-128 2-25 (261)
218 PRK14722 flhF flagellar biosyn 93.3 0.071 1.5E-06 53.2 3.4 26 102-127 135-160 (374)
219 cd01918 HprK_C HprK/P, the bif 93.3 0.071 1.5E-06 46.3 2.9 24 104-127 14-37 (149)
220 cd03273 ABC_SMC2_euk Eukaryoti 93.3 0.088 1.9E-06 49.3 3.8 24 103-126 24-47 (251)
221 PLN02422 dephospho-CoA kinase 93.2 1.5 3.3E-05 40.9 11.8 22 105-126 2-23 (232)
222 PRK15455 PrkA family serine pr 93.1 0.12 2.6E-06 54.2 4.9 25 103-127 102-126 (644)
223 cd02029 PRK_like Phosphoribulo 93.1 0.088 1.9E-06 50.2 3.5 23 106-128 1-23 (277)
224 cd04159 Arl10_like Arl10-like 93.1 0.071 1.5E-06 44.6 2.7 21 107-127 2-22 (159)
225 TIGR03015 pepcterm_ATPase puta 93.1 0.085 1.8E-06 49.4 3.5 25 104-128 43-67 (269)
226 PRK12288 GTPase RsgA; Reviewed 93.1 0.071 1.5E-06 52.7 3.0 24 104-127 205-228 (347)
227 cd01881 Obg_like The Obg-like 93.1 0.076 1.6E-06 45.8 2.9 35 109-144 1-35 (176)
228 KOG1191|consensus 93.1 0.09 2E-06 53.6 3.7 59 104-162 268-328 (531)
229 cd01897 NOG NOG1 is a nucleola 93.0 0.085 1.8E-06 45.3 3.1 23 105-127 1-23 (168)
230 PRK08903 DnaA regulatory inact 93.0 0.088 1.9E-06 48.4 3.4 25 103-127 41-65 (227)
231 PLN02842 nucleotide kinase 93.0 0.4 8.6E-06 49.7 8.4 22 108-129 1-22 (505)
232 PF04495 GRASP55_65: GRASP55/6 93.0 0.24 5.1E-06 42.5 5.7 53 9-64 43-97 (138)
233 TIGR00041 DTMP_kinase thymidyl 93.0 0.074 1.6E-06 47.4 2.7 26 104-129 3-28 (195)
234 PRK06851 hypothetical protein; 93.0 0.07 1.5E-06 53.1 2.8 25 103-127 29-53 (367)
235 COG3638 ABC-type phosphate/pho 93.0 0.17 3.8E-06 47.2 5.1 57 104-172 30-88 (258)
236 KOG3347|consensus 93.0 0.14 3.1E-06 44.5 4.3 54 107-160 10-65 (176)
237 COG4639 Predicted kinase [Gene 93.0 0.07 1.5E-06 46.6 2.4 25 104-128 2-26 (168)
238 PRK07667 uridine kinase; Provi 92.9 0.087 1.9E-06 47.4 3.1 24 105-128 18-41 (193)
239 TIGR01166 cbiO cobalt transpor 92.9 0.09 1.9E-06 46.9 3.2 25 103-127 17-41 (190)
240 COG0396 sufC Cysteine desulfur 92.9 0.081 1.8E-06 49.1 2.9 58 103-173 29-88 (251)
241 TIGR02640 gas_vesic_GvpN gas v 92.9 0.11 2.4E-06 49.1 4.0 26 103-128 20-45 (262)
242 cd03283 ABC_MutS-like MutS-lik 92.9 0.081 1.8E-06 48.0 2.9 23 104-126 25-47 (199)
243 COG3842 PotA ABC-type spermidi 92.9 0.074 1.6E-06 52.6 2.8 23 104-126 31-53 (352)
244 cd04164 trmE TrmE (MnmE, ThdF, 92.8 0.092 2E-06 44.1 3.0 21 107-127 4-24 (157)
245 PRK09087 hypothetical protein; 92.8 0.087 1.9E-06 48.9 3.0 25 104-128 44-68 (226)
246 cd01858 NGP_1 NGP-1. Autoanti 92.8 0.076 1.6E-06 45.9 2.5 23 105-127 103-125 (157)
247 TIGR00960 3a0501s02 Type II (G 92.8 0.094 2E-06 47.7 3.2 25 103-127 28-52 (216)
248 TIGR02881 spore_V_K stage V sp 92.8 0.1 2.2E-06 49.2 3.6 25 103-127 41-65 (261)
249 cd04138 H_N_K_Ras_like H-Ras/N 92.8 0.092 2E-06 44.4 3.0 21 107-127 4-24 (162)
250 PRK01184 hypothetical protein; 92.8 0.09 1.9E-06 46.6 3.0 23 105-128 2-24 (184)
251 cd01898 Obg Obg subfamily. Th 92.8 0.11 2.4E-06 44.6 3.5 21 107-127 3-23 (170)
252 TIGR00157 ribosome small subun 92.8 0.11 2.3E-06 48.8 3.6 24 104-127 120-143 (245)
253 cd03225 ABC_cobalt_CbiO_domain 92.8 0.095 2.1E-06 47.4 3.2 25 103-127 26-50 (211)
254 TIGR00554 panK_bact pantothena 92.8 0.093 2E-06 50.6 3.2 25 103-127 61-85 (290)
255 cd01849 YlqF_related_GTPase Yl 92.7 0.1 2.2E-06 45.1 3.1 40 104-143 100-139 (155)
256 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.7 0.1 2.2E-06 47.6 3.2 25 103-127 29-53 (218)
257 cd03292 ABC_FtsE_transporter F 92.7 0.1 2.2E-06 47.3 3.2 25 103-127 26-50 (214)
258 PRK00089 era GTPase Era; Revie 92.7 0.094 2E-06 50.1 3.1 38 105-142 6-43 (292)
259 cd03222 ABC_RNaseL_inhibitor T 92.7 0.098 2.1E-06 46.7 3.0 25 103-127 24-48 (177)
260 cd04155 Arl3 Arl3 subfamily. 92.6 0.094 2E-06 45.4 2.8 22 106-127 16-37 (173)
261 cd03263 ABC_subfamily_A The AB 92.6 0.1 2.2E-06 47.6 3.2 25 103-127 27-51 (220)
262 cd03262 ABC_HisP_GlnQ_permease 92.6 0.1 2.3E-06 47.2 3.3 25 103-127 25-49 (213)
263 PRK04220 2-phosphoglycerate ki 92.6 0.1 2.3E-06 50.4 3.4 25 104-128 92-116 (301)
264 cd03261 ABC_Org_Solvent_Resist 92.6 0.1 2.2E-06 48.1 3.2 25 103-127 25-49 (235)
265 PRK15177 Vi polysaccharide exp 92.6 0.1 2.3E-06 47.7 3.2 25 103-127 12-36 (213)
266 cd03226 ABC_cobalt_CbiO_domain 92.6 0.1 2.3E-06 47.1 3.1 25 103-127 25-49 (205)
267 PRK12338 hypothetical protein; 92.6 0.096 2.1E-06 51.1 3.1 26 104-129 4-29 (319)
268 cd04119 RJL RJL (RabJ-Like) su 92.6 0.1 2.3E-06 44.4 3.0 21 107-127 3-23 (168)
269 cd03269 ABC_putative_ATPase Th 92.5 0.11 2.4E-06 47.1 3.2 25 103-127 25-49 (210)
270 TIGR02673 FtsE cell division A 92.5 0.11 2.4E-06 47.2 3.2 25 103-127 27-51 (214)
271 TIGR02315 ABC_phnC phosphonate 92.5 0.11 2.3E-06 48.2 3.2 25 103-127 27-51 (243)
272 TIGR00635 ruvB Holliday juncti 92.5 0.11 2.5E-06 49.7 3.5 26 103-128 29-54 (305)
273 cd04101 RabL4 RabL4 (Rab-like4 92.5 0.12 2.7E-06 44.1 3.4 21 107-127 3-23 (164)
274 PF13521 AAA_28: AAA domain; P 92.5 0.075 1.6E-06 46.2 2.0 21 107-127 2-22 (163)
275 PF13245 AAA_19: Part of AAA d 92.5 0.12 2.7E-06 39.4 3.0 22 104-125 10-31 (76)
276 PRK14021 bifunctional shikimat 92.5 0.25 5.4E-06 51.8 6.2 28 102-129 4-31 (542)
277 PRK08084 DNA replication initi 92.5 0.11 2.3E-06 48.5 3.1 24 104-127 45-68 (235)
278 cd03259 ABC_Carb_Solutes_like 92.5 0.11 2.4E-06 47.1 3.2 25 103-127 25-49 (213)
279 TIGR02528 EutP ethanolamine ut 92.5 0.1 2.2E-06 43.7 2.7 21 107-127 3-23 (142)
280 cd03256 ABC_PhnC_transporter A 92.5 0.11 2.4E-06 48.0 3.3 25 103-127 26-50 (241)
281 smart00173 RAS Ras subfamily o 92.4 0.11 2.4E-06 44.4 3.0 21 107-127 3-23 (164)
282 TIGR02211 LolD_lipo_ex lipopro 92.4 0.11 2.5E-06 47.3 3.2 25 103-127 30-54 (221)
283 cd03258 ABC_MetN_methionine_tr 92.4 0.11 2.5E-06 47.7 3.2 25 103-127 30-54 (233)
284 cd00876 Ras Ras family. The R 92.4 0.12 2.6E-06 43.6 3.2 21 107-127 2-22 (160)
285 cd03235 ABC_Metallic_Cations A 92.4 0.11 2.3E-06 47.2 3.0 25 103-127 24-48 (213)
286 PF12775 AAA_7: P-loop contain 92.3 0.14 3E-06 48.9 3.8 26 102-127 31-56 (272)
287 TIGR00176 mobB molybdopterin-g 92.3 0.11 2.5E-06 45.2 2.9 22 106-127 1-22 (155)
288 cd03264 ABC_drug_resistance_li 92.3 0.11 2.4E-06 47.1 3.0 22 106-127 27-48 (211)
289 cd03224 ABC_TM1139_LivF_branch 92.3 0.11 2.4E-06 47.3 3.0 25 103-127 25-49 (222)
290 PF03266 NTPase_1: NTPase; In 92.3 0.1 2.3E-06 46.1 2.7 49 301-350 115-167 (168)
291 cd01894 EngA1 EngA1 subfamily. 92.3 0.063 1.4E-06 45.2 1.2 20 108-127 1-20 (157)
292 TIGR02868 CydC thiol reductant 92.2 0.14 3E-06 53.2 4.0 25 103-127 360-384 (529)
293 cd03293 ABC_NrtD_SsuB_transpor 92.2 0.12 2.6E-06 47.2 3.1 25 103-127 29-53 (220)
294 cd01120 RecA-like_NTPases RecA 92.2 0.12 2.6E-06 43.7 2.9 22 106-127 1-22 (165)
295 cd03265 ABC_DrrA DrrA is the A 92.2 0.13 2.8E-06 47.0 3.3 25 103-127 25-49 (220)
296 KOG3532|consensus 92.2 0.34 7.3E-06 51.1 6.5 61 1-64 389-450 (1051)
297 PF06414 Zeta_toxin: Zeta toxi 92.2 0.1 2.3E-06 47.0 2.6 27 102-128 13-39 (199)
298 PRK11629 lolD lipoprotein tran 92.2 0.12 2.7E-06 47.6 3.2 25 103-127 34-58 (233)
299 cd03219 ABC_Mj1267_LivG_branch 92.2 0.12 2.5E-06 47.7 3.0 25 103-127 25-49 (236)
300 cd03296 ABC_CysA_sulfate_impor 92.1 0.13 2.8E-06 47.7 3.2 26 102-127 26-51 (239)
301 cd01896 DRG The developmentall 92.1 0.13 2.8E-06 47.9 3.2 49 107-156 3-53 (233)
302 PRK10584 putative ABC transpor 92.1 0.13 2.8E-06 47.2 3.2 25 103-127 35-59 (228)
303 cd03272 ABC_SMC3_euk Eukaryoti 92.1 0.15 3.3E-06 47.1 3.7 22 104-125 23-44 (243)
304 cd03301 ABC_MalK_N The N-termi 92.1 0.13 2.9E-06 46.6 3.2 25 103-127 25-49 (213)
305 cd03260 ABC_PstB_phosphate_tra 92.1 0.13 2.9E-06 47.1 3.3 25 103-127 25-49 (227)
306 cd01853 Toc34_like Toc34-like 92.1 0.09 2E-06 49.5 2.1 25 103-127 30-54 (249)
307 cd03257 ABC_NikE_OppD_transpor 92.1 0.13 2.8E-06 47.0 3.1 25 103-127 30-54 (228)
308 PRK06893 DNA replication initi 92.0 0.12 2.6E-06 47.9 2.9 23 105-127 40-62 (229)
309 cd03246 ABCC_Protease_Secretio 92.0 0.15 3.2E-06 44.9 3.3 25 103-127 27-51 (173)
310 PRK00454 engB GTP-binding prot 92.0 0.13 2.8E-06 45.5 3.0 24 104-127 24-47 (196)
311 cd04139 RalA_RalB RalA/RalB su 92.0 0.13 2.8E-06 43.7 2.9 21 107-127 3-23 (164)
312 cd01876 YihA_EngB The YihA (En 92.0 0.12 2.6E-06 43.6 2.7 20 107-126 2-21 (170)
313 cd03229 ABC_Class3 This class 92.0 0.15 3.2E-06 45.1 3.3 25 103-127 25-49 (178)
314 TIGR00455 apsK adenylylsulfate 91.9 0.14 3.1E-06 45.4 3.2 26 102-127 16-41 (184)
315 PRK13951 bifunctional shikimat 91.9 0.54 1.2E-05 48.7 7.8 24 106-129 2-25 (488)
316 cd03232 ABC_PDR_domain2 The pl 91.9 0.13 2.9E-06 46.0 3.0 24 103-126 32-55 (192)
317 cd03218 ABC_YhbG The ABC trans 91.9 0.14 3E-06 47.0 3.2 25 103-127 25-49 (232)
318 PRK06995 flhF flagellar biosyn 91.9 0.13 2.8E-06 53.1 3.1 25 103-127 255-279 (484)
319 PRK08099 bifunctional DNA-bind 91.9 0.13 2.9E-06 51.8 3.2 27 102-128 217-243 (399)
320 cd03223 ABCD_peroxisomal_ALDP 91.9 0.15 3.3E-06 44.6 3.3 25 103-127 26-50 (166)
321 cd03268 ABC_BcrA_bacitracin_re 91.9 0.14 3.1E-06 46.2 3.2 25 103-127 25-49 (208)
322 PRK11248 tauB taurine transpor 91.9 0.14 3.1E-06 48.1 3.2 25 103-127 26-50 (255)
323 cd03230 ABC_DR_subfamily_A Thi 91.9 0.15 3.2E-06 44.9 3.2 25 103-127 25-49 (173)
324 TIGR03598 GTPase_YsxC ribosome 91.8 0.17 3.7E-06 44.5 3.6 25 103-127 17-41 (179)
325 TIGR03864 PQQ_ABC_ATP ABC tran 91.8 0.15 3.2E-06 47.2 3.2 25 103-127 26-50 (236)
326 PRK10908 cell division protein 91.8 0.15 3.2E-06 46.7 3.3 25 103-127 27-51 (222)
327 PRK12723 flagellar biosynthesi 91.8 0.13 2.8E-06 51.6 3.1 25 103-127 173-197 (388)
328 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.8 0.15 3.3E-06 43.6 3.1 25 103-127 25-49 (144)
329 PRK13541 cytochrome c biogenes 91.8 0.15 3.3E-06 45.7 3.2 25 103-127 25-49 (195)
330 cd01855 YqeH YqeH. YqeH is an 91.8 0.15 3.3E-06 45.4 3.2 43 104-146 127-177 (190)
331 COG0529 CysC Adenylylsulfate k 91.8 0.15 3.2E-06 45.6 3.0 26 102-127 21-46 (197)
332 cd01860 Rab5_related Rab5-rela 91.8 0.15 3.2E-06 43.5 3.0 21 107-127 4-24 (163)
333 cd04136 Rap_like Rap-like subf 91.8 0.15 3.2E-06 43.4 3.0 21 107-127 4-24 (163)
334 TIGR03608 L_ocin_972_ABC putat 91.7 0.15 3.2E-06 45.9 3.1 25 103-127 23-47 (206)
335 cd03237 ABC_RNaseL_inhibitor_d 91.7 0.16 3.5E-06 47.6 3.4 25 103-127 24-48 (246)
336 COG1428 Deoxynucleoside kinase 91.7 0.13 2.8E-06 47.1 2.6 25 105-129 5-29 (216)
337 PRK11889 flhF flagellar biosyn 91.7 0.14 3E-06 51.5 3.1 25 103-127 240-264 (436)
338 KOG0606|consensus 91.7 0.24 5.2E-06 54.9 5.0 52 12-64 661-712 (1205)
339 PF03205 MobB: Molybdopterin g 91.7 0.11 2.5E-06 44.4 2.2 22 106-127 2-23 (140)
340 PRK05439 pantothenate kinase; 91.7 0.16 3.4E-06 49.6 3.3 25 103-127 85-109 (311)
341 PRK10416 signal recognition pa 91.7 0.15 3.2E-06 49.9 3.2 25 103-127 113-137 (318)
342 TIGR02770 nickel_nikD nickel i 91.7 0.15 3.3E-06 47.0 3.2 25 103-127 11-35 (230)
343 PRK11124 artP arginine transpo 91.7 0.16 3.4E-06 47.1 3.3 25 103-127 27-51 (242)
344 cd03295 ABC_OpuCA_Osmoprotecti 91.6 0.16 3.5E-06 47.1 3.3 26 102-127 25-50 (242)
345 cd03214 ABC_Iron-Siderophores_ 91.6 0.17 3.6E-06 44.9 3.3 26 102-127 23-48 (180)
346 PRK10247 putative ABC transpor 91.6 0.16 3.5E-06 46.7 3.3 25 103-127 32-56 (225)
347 cd03266 ABC_NatA_sodium_export 91.6 0.16 3.4E-06 46.2 3.2 25 103-127 30-54 (218)
348 cd03245 ABCC_bacteriocin_expor 91.6 0.16 3.5E-06 46.3 3.2 25 103-127 29-53 (220)
349 TIGR00231 small_GTP small GTP- 91.6 0.15 3.3E-06 42.1 2.9 21 107-127 4-24 (161)
350 cd03247 ABCC_cytochrome_bd The 91.6 0.17 3.6E-06 44.7 3.2 25 103-127 27-51 (178)
351 TIGR01978 sufC FeS assembly AT 91.6 0.16 3.4E-06 47.0 3.2 25 103-127 25-49 (243)
352 COG1117 PstB ABC-type phosphat 91.6 0.15 3.3E-06 47.0 2.9 25 103-127 32-56 (253)
353 PRK14242 phosphate transporter 91.6 0.15 3.3E-06 47.5 3.2 24 103-126 31-54 (253)
354 TIGR00064 ftsY signal recognit 91.6 0.16 3.5E-06 48.5 3.3 26 102-127 70-95 (272)
355 cd04160 Arfrp1 Arfrp1 subfamil 91.6 0.14 3.1E-06 43.9 2.7 21 107-127 2-22 (167)
356 TIGR03410 urea_trans_UrtE urea 91.6 0.16 3.4E-06 46.7 3.2 25 103-127 25-49 (230)
357 TIGR02524 dot_icm_DotB Dot/Icm 91.6 0.15 3.3E-06 50.6 3.2 24 104-127 134-157 (358)
358 cd04113 Rab4 Rab4 subfamily. 91.6 0.15 3.3E-06 43.4 2.9 21 107-127 3-23 (161)
359 cd03278 ABC_SMC_barmotin Barmo 91.5 0.15 3.3E-06 46.1 2.9 20 106-125 24-43 (197)
360 cd03298 ABC_ThiQ_thiamine_tran 91.5 0.17 3.6E-06 45.9 3.2 25 103-127 23-47 (211)
361 PF03215 Rad17: Rad17 cell cyc 91.5 0.15 3.2E-06 53.2 3.2 26 103-128 44-69 (519)
362 COG2884 FtsE Predicted ATPase 91.5 0.15 3.3E-06 46.1 2.8 23 104-126 28-50 (223)
363 PRK11176 lipid transporter ATP 91.5 0.23 4.9E-06 52.2 4.7 25 103-127 368-392 (582)
364 cd03254 ABCC_Glucan_exporter_l 91.5 0.17 3.6E-06 46.5 3.2 25 103-127 28-52 (229)
365 PRK13539 cytochrome c biogenes 91.5 0.17 3.7E-06 45.9 3.2 25 103-127 27-51 (207)
366 PF01583 APS_kinase: Adenylyls 91.5 0.14 3E-06 44.9 2.5 23 105-127 3-25 (156)
367 PRK05201 hslU ATP-dependent pr 91.5 0.18 3.9E-06 51.1 3.6 26 104-129 50-75 (443)
368 CHL00181 cbbX CbbX; Provisiona 91.5 0.18 4E-06 48.5 3.6 24 104-127 59-82 (287)
369 KOG0744|consensus 91.5 0.13 2.8E-06 50.1 2.5 25 104-128 177-201 (423)
370 cd03234 ABCG_White The White s 91.5 0.15 3.4E-06 46.7 3.0 25 103-127 32-56 (226)
371 cd01870 RhoA_like RhoA-like su 91.5 0.16 3.5E-06 44.0 2.9 22 106-127 3-24 (175)
372 cd03240 ABC_Rad50 The catalyti 91.5 0.18 3.9E-06 45.8 3.4 20 106-125 24-43 (204)
373 TIGR01184 ntrCD nitrate transp 91.5 0.17 3.6E-06 46.7 3.2 25 103-127 10-34 (230)
374 PRK11247 ssuB aliphatic sulfon 91.5 0.17 3.6E-06 47.8 3.2 25 103-127 37-61 (257)
375 PRK05416 glmZ(sRNA)-inactivati 91.5 0.16 3.5E-06 48.9 3.2 24 103-126 5-28 (288)
376 smart00175 RAB Rab subfamily o 91.5 0.16 3.6E-06 43.1 2.9 21 107-127 3-23 (164)
377 PF02367 UPF0079: Uncharacteri 91.5 0.15 3.2E-06 42.9 2.5 26 103-128 14-39 (123)
378 PRK13540 cytochrome c biogenes 91.4 0.18 3.8E-06 45.5 3.3 25 103-127 26-50 (200)
379 TIGR01650 PD_CobS cobaltochela 91.4 0.18 4E-06 49.3 3.5 27 103-129 63-89 (327)
380 cd03215 ABC_Carb_Monos_II This 91.4 0.17 3.7E-06 44.9 3.1 25 103-127 25-49 (182)
381 TIGR00073 hypB hydrogenase acc 91.4 0.14 3.1E-06 46.4 2.7 26 102-127 20-45 (207)
382 TIGR01189 ccmA heme ABC export 91.4 0.18 3.8E-06 45.4 3.2 25 103-127 25-49 (198)
383 PHA02244 ATPase-like protein 91.4 0.21 4.5E-06 49.8 3.9 27 102-128 117-143 (383)
384 cd01862 Rab7 Rab7 subfamily. 91.4 0.17 3.6E-06 43.5 2.9 21 107-127 3-23 (172)
385 PRK13538 cytochrome c biogenes 91.4 0.17 3.8E-06 45.6 3.2 25 103-127 26-50 (204)
386 PRK13851 type IV secretion sys 91.4 0.17 3.7E-06 50.0 3.3 25 103-127 161-185 (344)
387 TIGR00390 hslU ATP-dependent p 91.4 0.2 4.4E-06 50.6 3.9 33 104-136 47-79 (441)
388 cd03216 ABC_Carb_Monos_I This 91.4 0.18 3.9E-06 44.0 3.2 25 103-127 25-49 (163)
389 PRK10895 lipopolysaccharide AB 91.4 0.17 3.8E-06 46.8 3.2 25 103-127 28-52 (241)
390 PRK11264 putative amino-acid A 91.3 0.18 3.8E-06 47.0 3.2 25 103-127 28-52 (250)
391 PTZ00451 dephospho-CoA kinase; 91.3 4.1 8.8E-05 38.3 12.4 22 106-127 3-24 (244)
392 cd03297 ABC_ModC_molybdenum_tr 91.3 0.16 3.4E-06 46.2 2.8 23 105-127 24-46 (214)
393 COG0466 Lon ATP-dependent Lon 91.3 0.18 3.8E-06 53.8 3.5 40 88-129 335-375 (782)
394 COG4778 PhnL ABC-type phosphon 91.3 0.25 5.4E-06 44.1 3.8 25 103-127 36-60 (235)
395 cd00879 Sar1 Sar1 subfamily. 91.3 0.17 3.6E-06 44.7 2.9 23 105-127 20-42 (190)
396 PRK14250 phosphate ABC transpo 91.3 0.18 3.9E-06 46.8 3.2 25 103-127 28-52 (241)
397 PRK12724 flagellar biosynthesi 91.3 0.16 3.4E-06 51.5 3.0 24 104-127 223-246 (432)
398 PF00437 T2SE: Type II/IV secr 91.3 0.26 5.6E-06 46.5 4.3 24 104-127 127-150 (270)
399 PRK08727 hypothetical protein; 91.2 0.17 3.7E-06 47.0 3.1 23 105-127 42-64 (233)
400 PRK05342 clpX ATP-dependent pr 91.2 0.18 4E-06 51.0 3.5 26 104-129 108-133 (412)
401 cd03228 ABCC_MRP_Like The MRP 91.2 0.2 4.3E-06 44.0 3.3 25 103-127 27-51 (171)
402 cd04156 ARLTS1 ARLTS1 subfamil 91.2 0.17 3.8E-06 43.0 2.8 21 107-127 2-22 (160)
403 PRK05800 cobU adenosylcobinami 91.2 0.17 3.7E-06 44.8 2.8 23 106-128 3-25 (170)
404 PRK14951 DNA polymerase III su 91.2 1.7 3.8E-05 46.2 10.8 25 105-129 39-63 (618)
405 PF13476 AAA_23: AAA domain; P 91.1 0.13 2.9E-06 45.3 2.1 23 103-125 18-40 (202)
406 cd03243 ABC_MutS_homologs The 91.1 0.18 4E-06 45.5 3.1 24 103-126 28-51 (202)
407 PRK00080 ruvB Holliday junctio 91.1 0.17 3.7E-06 49.4 3.0 27 103-129 50-76 (328)
408 PRK14730 coaE dephospho-CoA ki 91.1 0.2 4.4E-06 45.3 3.3 24 105-128 2-25 (195)
409 TIGR03797 NHPM_micro_ABC2 NHPM 91.1 0.25 5.3E-06 53.2 4.5 48 103-162 478-527 (686)
410 PRK14958 DNA polymerase III su 91.1 1.6 3.6E-05 45.4 10.4 57 105-177 39-95 (509)
411 cd02026 PRK Phosphoribulokinas 91.1 0.18 3.9E-06 48.2 3.1 22 106-127 1-22 (273)
412 TIGR00972 3a0107s01c2 phosphat 91.1 0.19 4.2E-06 46.7 3.2 25 103-127 26-50 (247)
413 TIGR02324 CP_lyasePhnL phospho 91.1 0.2 4.3E-06 45.8 3.2 25 103-127 33-57 (224)
414 TIGR02323 CP_lyasePhnK phospho 91.1 0.19 4E-06 47.0 3.1 25 103-127 28-52 (253)
415 cd04124 RabL2 RabL2 subfamily. 91.0 0.19 4.2E-06 43.2 3.0 21 107-127 3-23 (161)
416 PRK14247 phosphate ABC transpo 91.0 0.19 4.2E-06 46.8 3.2 25 103-127 28-52 (250)
417 PRK09493 glnQ glutamine ABC tr 91.0 0.2 4.2E-06 46.4 3.2 25 103-127 26-50 (240)
418 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 91.0 0.19 4.1E-06 43.1 3.0 21 107-127 5-25 (166)
419 PRK10771 thiQ thiamine transpo 91.0 0.19 4.2E-06 46.3 3.2 25 103-127 24-48 (232)
420 cd03280 ABC_MutS2 MutS2 homolo 91.0 0.17 3.7E-06 45.7 2.7 21 105-125 29-49 (200)
421 cd03251 ABCC_MsbA MsbA is an e 91.0 0.2 4.3E-06 46.1 3.2 25 103-127 27-51 (234)
422 KOG0058|consensus 91.0 0.27 5.9E-06 52.4 4.5 24 104-127 494-517 (716)
423 cd04115 Rab33B_Rab33A Rab33B/R 91.0 0.19 4.1E-06 43.6 2.9 20 107-126 5-24 (170)
424 PRK14721 flhF flagellar biosyn 91.0 0.19 4.1E-06 50.9 3.3 24 103-126 190-213 (420)
425 TIGR02782 TrbB_P P-type conjug 91.0 0.2 4.2E-06 48.6 3.2 25 103-127 131-155 (299)
426 cd03252 ABCC_Hemolysin The ABC 91.0 0.2 4.3E-06 46.2 3.2 25 103-127 27-51 (237)
427 PRK14267 phosphate ABC transpo 90.9 0.2 4.3E-06 46.8 3.2 25 103-127 29-53 (253)
428 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 90.9 0.2 4.4E-06 46.1 3.2 25 103-127 47-71 (224)
429 KOG0731|consensus 90.9 0.3 6.5E-06 52.6 4.8 44 104-167 344-387 (774)
430 PRK13638 cbiO cobalt transport 90.9 0.19 4.1E-06 47.6 3.1 25 103-127 26-50 (271)
431 PRK15056 manganese/iron transp 90.9 0.2 4.3E-06 47.5 3.2 25 103-127 32-56 (272)
432 TIGR02857 CydD thiol reductant 90.9 0.27 6E-06 51.0 4.5 25 103-127 347-371 (529)
433 PRK14274 phosphate ABC transpo 90.9 0.21 4.5E-06 46.9 3.2 25 103-127 37-61 (259)
434 cd00154 Rab Rab family. Rab G 90.9 0.21 4.5E-06 41.7 3.0 21 107-127 3-23 (159)
435 cd03233 ABC_PDR_domain1 The pl 90.9 0.19 4.1E-06 45.4 2.9 25 103-127 32-56 (202)
436 cd01868 Rab11_like Rab11-like. 90.8 0.2 4.4E-06 42.9 2.9 21 107-127 6-26 (165)
437 TIGR00958 3a01208 Conjugate Tr 90.8 0.25 5.5E-06 53.4 4.3 25 103-127 506-530 (711)
438 PRK10744 pstB phosphate transp 90.8 0.2 4.4E-06 47.0 3.2 25 103-127 38-62 (260)
439 PRK13645 cbiO cobalt transport 90.8 0.19 4.2E-06 48.0 3.1 25 103-127 36-60 (289)
440 PRK14261 phosphate ABC transpo 90.8 0.21 4.5E-06 46.7 3.2 24 103-126 31-54 (253)
441 cd01864 Rab19 Rab19 subfamily. 90.8 0.2 4.3E-06 43.0 2.9 21 106-126 5-25 (165)
442 cd03290 ABCC_SUR1_N The SUR do 90.8 0.21 4.7E-06 45.4 3.2 25 103-127 26-50 (218)
443 PRK05703 flhF flagellar biosyn 90.8 0.18 4E-06 51.2 3.0 24 104-127 221-244 (424)
444 TIGR01277 thiQ thiamine ABC tr 90.8 0.21 4.5E-06 45.4 3.1 26 102-127 22-47 (213)
445 TIGR00382 clpX endopeptidase C 90.8 0.24 5.2E-06 50.1 3.8 25 104-128 116-140 (413)
446 cd04123 Rab21 Rab21 subfamily. 90.8 0.21 4.6E-06 42.2 3.0 21 107-127 3-23 (162)
447 PRK13547 hmuV hemin importer A 90.8 0.21 4.5E-06 47.6 3.2 25 103-127 26-50 (272)
448 cd03294 ABC_Pro_Gly_Bertaine T 90.8 0.21 4.6E-06 47.3 3.2 25 103-127 49-73 (269)
449 cd01867 Rab8_Rab10_Rab13_like 90.8 0.21 4.5E-06 43.2 3.0 21 107-127 6-26 (167)
450 PRK13632 cbiO cobalt transport 90.8 0.21 4.5E-06 47.3 3.2 25 103-127 34-58 (271)
451 PF00350 Dynamin_N: Dynamin fa 90.8 0.18 3.9E-06 43.5 2.5 35 107-142 1-35 (168)
452 cd03244 ABCC_MRP_domain2 Domai 90.7 0.22 4.8E-06 45.4 3.3 25 103-127 29-53 (221)
453 PRK14239 phosphate transporter 90.7 0.21 4.6E-06 46.5 3.2 24 103-126 30-53 (252)
454 cd00157 Rho Rho (Ras homology) 90.7 0.21 4.6E-06 42.8 3.0 21 107-127 3-23 (171)
455 PRK14248 phosphate ABC transpo 90.7 0.21 4.6E-06 47.1 3.2 24 103-126 46-69 (268)
456 cd00877 Ran Ran (Ras-related n 90.7 0.21 4.6E-06 43.3 3.0 21 107-127 3-23 (166)
457 TIGR03771 anch_rpt_ABC anchore 90.7 0.22 4.7E-06 45.7 3.2 25 103-127 5-29 (223)
458 COG1121 ZnuC ABC-type Mn/Zn tr 90.7 0.22 4.7E-06 47.0 3.2 24 103-126 29-52 (254)
459 cd04110 Rab35 Rab35 subfamily. 90.7 0.2 4.4E-06 44.9 3.0 22 106-127 8-29 (199)
460 cd04146 RERG_RasL11_like RERG/ 90.7 0.21 4.4E-06 43.0 2.9 20 107-126 2-21 (165)
461 cd03116 MobB Molybdenum is an 90.7 0.21 4.6E-06 43.8 2.9 23 105-127 2-24 (159)
462 cd01865 Rab3 Rab3 subfamily. 90.7 0.21 4.6E-06 43.0 2.9 21 107-127 4-24 (165)
463 PRK11300 livG leucine/isoleuci 90.7 0.2 4.3E-06 46.8 3.0 25 103-127 30-54 (255)
464 PRK05642 DNA replication initi 90.7 0.21 4.5E-06 46.5 3.0 23 105-127 46-68 (234)
465 cd01861 Rab6 Rab6 subfamily. 90.7 0.22 4.7E-06 42.4 3.0 21 107-127 3-23 (161)
466 COG4525 TauB ABC-type taurine 90.7 0.2 4.3E-06 45.7 2.7 24 103-126 30-53 (259)
467 PRK09544 znuC high-affinity zi 90.7 0.22 4.7E-06 46.8 3.2 25 103-127 29-53 (251)
468 PRK14273 phosphate ABC transpo 90.7 0.22 4.8E-06 46.6 3.2 25 103-127 32-56 (254)
469 PRK14255 phosphate ABC transpo 90.7 0.22 4.8E-06 46.5 3.2 24 103-126 30-53 (252)
470 TIGR02788 VirB11 P-type DNA tr 90.7 0.28 6E-06 47.6 4.0 25 103-127 143-167 (308)
471 cd04157 Arl6 Arl6 subfamily. 90.6 0.2 4.3E-06 42.6 2.7 21 107-127 2-22 (162)
472 PRK14241 phosphate transporter 90.6 0.22 4.7E-06 46.8 3.1 25 103-127 29-53 (258)
473 COG1220 HslU ATP-dependent pro 90.6 0.22 4.8E-06 48.8 3.1 25 103-127 49-73 (444)
474 cd04162 Arl9_Arfrp2_like Arl9/ 90.6 0.22 4.7E-06 43.2 2.9 21 107-127 2-22 (164)
475 cd03253 ABCC_ATM1_transporter 90.6 0.23 4.9E-06 45.8 3.2 25 103-127 26-50 (236)
476 PF08298 AAA_PrkA: PrkA AAA do 90.6 0.2 4.4E-06 49.4 3.0 29 103-131 87-115 (358)
477 cd03250 ABCC_MRP_domain1 Domai 90.6 0.24 5.1E-06 44.7 3.2 26 102-127 29-54 (204)
478 cd00880 Era_like Era (E. coli 90.6 0.15 3.2E-06 42.2 1.8 19 109-127 1-19 (163)
479 KOG0056|consensus 90.6 0.2 4.3E-06 51.4 2.9 52 103-164 563-614 (790)
480 PRK11831 putative ABC transpor 90.6 0.22 4.8E-06 47.1 3.2 25 103-127 32-56 (269)
481 PRK14262 phosphate ABC transpo 90.6 0.23 4.9E-06 46.3 3.2 24 103-126 28-51 (250)
482 PRK09183 transposase/IS protei 90.6 0.19 4.2E-06 47.6 2.7 25 103-127 101-125 (259)
483 PRK05537 bifunctional sulfate 90.6 0.2 4.4E-06 52.7 3.2 30 99-128 387-416 (568)
484 PRK13648 cbiO cobalt transport 90.6 0.23 4.9E-06 47.0 3.2 25 103-127 34-58 (269)
485 cd03267 ABC_NatA_like Similar 90.6 0.23 4.9E-06 46.1 3.2 25 103-127 46-70 (236)
486 cd03248 ABCC_TAP TAP, the Tran 90.5 0.24 5.1E-06 45.4 3.2 25 103-127 39-63 (226)
487 TIGR03005 ectoine_ehuA ectoine 90.5 0.23 5E-06 46.4 3.2 25 103-127 25-49 (252)
488 PRK11701 phnK phosphonate C-P 90.5 0.22 4.8E-06 46.7 3.1 25 103-127 31-55 (258)
489 PTZ00265 multidrug resistance 90.5 0.32 6.9E-06 56.9 4.9 25 103-127 1193-1217(1466)
490 cd04154 Arl2 Arl2 subfamily. 90.5 0.21 4.6E-06 43.4 2.8 22 106-127 16-37 (173)
491 PLN02348 phosphoribulokinase 90.5 0.22 4.8E-06 49.9 3.2 26 103-128 48-73 (395)
492 PRK13543 cytochrome c biogenes 90.5 0.23 5.1E-06 45.2 3.2 25 103-127 36-60 (214)
493 PRK14259 phosphate ABC transpo 90.5 0.23 5E-06 47.0 3.2 25 103-127 38-62 (269)
494 PRK14240 phosphate transporter 90.5 0.23 5.1E-06 46.2 3.2 24 103-126 28-51 (250)
495 cd01878 HflX HflX subfamily. 90.5 0.22 4.8E-06 44.6 2.9 23 105-127 42-64 (204)
496 cd03249 ABC_MTABC3_MDL1_MDL2 M 90.5 0.23 4.9E-06 45.9 3.1 25 103-127 28-52 (238)
497 cd04161 Arl2l1_Arl13_like Arl2 90.4 0.23 4.9E-06 43.2 2.9 21 107-127 2-22 (167)
498 PRK10575 iron-hydroxamate tran 90.4 0.22 4.8E-06 47.0 3.1 25 103-127 36-60 (265)
499 cd04135 Tc10 TC10 subfamily. 90.4 0.23 5E-06 42.9 3.0 21 107-127 3-23 (174)
500 PRK11174 cysteine/glutathione 90.4 0.37 8.1E-06 50.7 5.0 49 103-162 375-423 (588)
No 1
>KOG0609|consensus
Probab=100.00 E-value=3.5e-43 Score=347.14 Aligned_cols=246 Identities=47% Similarity=0.825 Sum_probs=226.6
Q ss_pred CcEEEEeCC-eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe---------------
Q psy16959 1 GATIRNEGD-AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM--------------- 64 (366)
Q Consensus 1 G~~i~~~~~-gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~--------------- 64 (366)
|++++.+.+ .++|+++++||.++++|.|+.||.|++|||+++.+...+++..+|+.+.|+++++
T Consensus 137 G~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfkiiP~~~~~~~~~~~~ 216 (542)
T KOG0609|consen 137 GATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFKIIPSYRPPPQQQVVF 216 (542)
T ss_pred ceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEEEcccccCCCceeeee
Confidence 789998655 6999999999999999999999999999999999999999999999999999986
Q ss_pred ------------------------------------eccCcc---------------cccccccC---------------
Q psy16959 65 ------------------------------------GREAWK---------------TSHAFRHT--------------- 78 (366)
Q Consensus 65 ------------------------------------~~~~w~---------------ps~~~~~~--------------- 78 (366)
|.+||| ||+.++++
T Consensus 217 vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qerr~a~~~~~~~~~~~~ 296 (542)
T KOG0609|consen 217 VRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQERRVACLRREVSKEPEK 296 (542)
T ss_pred ehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHHHHHHHhhhcccCCcC
Confidence 899999 66666554
Q ss_pred --------------------ccCccCccccccceeeeccccCCCCCCcEEEeCCCCCChHHHHHHHHh-ccCCcceeeec
Q psy16959 79 --------------------EHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLME-DSDRFAAAIPH 137 (366)
Q Consensus 79 --------------------~~~~~~~~~~~~YE~V~~~~~~~~~~r~ivL~GpsgsGK~~L~~~L~~-~~~~~~~~~~~ 137 (366)
.++.++..+.++||+|+++.| ..+|++||+||.|+|...|..+|.. +|..|+..+||
T Consensus 297 ~~c~~l~kkkk~~~~~y~~~~~~~~d~~~~~tYEEV~~~~~--~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPh 374 (542)
T KOG0609|consen 297 TRCQRLSKKKKKKKSKYLGKHSAVFDQPELLTYEEVVRYPP--FRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPH 374 (542)
T ss_pred chhcccchhhhhhhhhhhhhcchhhhccccccHHHHhhhcc--cccceEEEECCcccchHHHHHHHHhhCccccccCCCC
Confidence 134457788999999999954 7889999999999999999999986 69999999999
Q ss_pred cCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCcc
Q psy16959 138 TSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPEL 217 (366)
Q Consensus 138 tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (366)
|||+||++|.+|++|||||.++|+..+.+|.|+||++|.++.||
T Consensus 375 TtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlYG------------------------------------ 418 (542)
T KOG0609|consen 375 TTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLYG------------------------------------ 418 (542)
T ss_pred cCCCCCCCCCCCccceeeehHHHhhhhhcCCceecCcchhcccc------------------------------------
Confidence 99999999999999999999999999999999999999999999
Q ss_pred ccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCccccc
Q psy16959 218 GFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLA 297 (366)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (366)
T Consensus 419 -------------------------------------------------------------------------------- 418 (542)
T KOG0609|consen 419 -------------------------------------------------------------------------------- 418 (542)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCCC------CCchhhhhh
Q psy16959 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGDN------FKTGTAQAQ 365 (366)
Q Consensus 298 ~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~------~~~~~~~~~ 365 (366)
|+.++|+.+++.||+|+||+.|++++.++.++|.|+|||+.|++.+.+++.+..-... |+++.+|++
T Consensus 419 -Ts~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d~~Lq~i 491 (542)
T KOG0609|consen 419 -TSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTDEDLQEI 491 (542)
T ss_pred -chHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhccccccccccCCHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999988877655 888887764
No 2
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.96 E-value=2.7e-29 Score=225.16 Aligned_cols=135 Identities=47% Similarity=0.926 Sum_probs=125.9
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGL 182 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~ 182 (366)
+|||||+||+||||++|+.+|++. |..|..++++|||+||++|.+|++|||||.++|+++++.|.|++++++.|++||
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG- 80 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG- 80 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE-
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh-
Confidence 689999999999999999999875 778999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhh
Q psy16959 183 RTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKE 262 (366)
Q Consensus 183 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~ 262 (366)
T Consensus 81 -------------------------------------------------------------------------------- 80 (183)
T PF00625_consen 81 -------------------------------------------------------------------------------- 80 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCC
Q psy16959 263 LGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPP 342 (366)
Q Consensus 263 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~ 342 (366)
++.+++++++..|++|+|+++|.++..++...++|++||+.|++
T Consensus 81 ------------------------------------t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s 124 (183)
T PF00625_consen 81 ------------------------------------TSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPS 124 (183)
T ss_dssp ------------------------------------EEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESS
T ss_pred ------------------------------------hccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccc
Confidence 78999999999999999999999999999889999999999999
Q ss_pred HHHHHHHHHhcCC
Q psy16959 343 FELLKQKRIRRGD 355 (366)
Q Consensus 343 ~~~l~~~~~~r~~ 355 (366)
.+.|++|+.+|++
T Consensus 125 ~~~l~~~l~~r~~ 137 (183)
T PF00625_consen 125 PEVLKRRLRRRGD 137 (183)
T ss_dssp HHHHHHHHHTTTH
T ss_pred hHHHHHHHhcccc
Confidence 9999999988875
No 3
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.96 E-value=8.2e-29 Score=218.42 Aligned_cols=139 Identities=32% Similarity=0.573 Sum_probs=128.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGL 182 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~ 182 (366)
++.+++|+||||+||+||.+.|.+.. .+.+++++|||+||+||++|++|||+|.+||+++++.++|+||++++|++||
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG- 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG- 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc-
Confidence 46789999999999999999999888 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhh
Q psy16959 183 RTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKE 262 (366)
Q Consensus 183 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~ 262 (366)
T Consensus 81 -------------------------------------------------------------------------------- 80 (191)
T COG0194 81 -------------------------------------------------------------------------------- 80 (191)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCC
Q psy16959 263 LGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPP 342 (366)
Q Consensus 263 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~ 342 (366)
++...+...+..|+.++|+++-+++...+..--....||+.|||
T Consensus 81 ------------------------------------T~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs 124 (191)
T COG0194 81 ------------------------------------TSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPS 124 (191)
T ss_pred ------------------------------------CcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCC
Confidence 88999999999999999999999998887552255779999999
Q ss_pred HHHHHHHHHhcCCCCCc
Q psy16959 343 FELLKQKRIRRGDNFKT 359 (366)
Q Consensus 343 ~~~l~~~~~~r~~~~~~ 359 (366)
.++|++|+.+|+..-.+
T Consensus 125 ~eeL~~RL~~Rgtds~e 141 (191)
T COG0194 125 LEELERRLKGRGTDSEE 141 (191)
T ss_pred HHHHHHHHHccCCCCHH
Confidence 99999999999986544
No 4
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.96 E-value=1.7e-28 Score=220.85 Aligned_cols=143 Identities=24% Similarity=0.477 Sum_probs=128.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGL 182 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~ 182 (366)
.+++|+|+||+||||++|+++|++..+.+.++++||||+||++|.+|++|||||.++|+++++.|.|+||++++|++||
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG- 81 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG- 81 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec-
Confidence 4678999999999999999999987556778899999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhh
Q psy16959 183 RTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKE 262 (366)
Q Consensus 183 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~ 262 (366)
T Consensus 82 -------------------------------------------------------------------------------- 81 (186)
T PRK14737 82 -------------------------------------------------------------------------------- 81 (186)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCc-EEEEEeCC
Q psy16959 263 LGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKP-FVIFVAPP 341 (366)
Q Consensus 263 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p-~vi~~~~~ 341 (366)
|+.+++++++++|++|++++++.++..++..-..+ ++||+.|+
T Consensus 82 ------------------------------------t~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pp 125 (186)
T PRK14737 82 ------------------------------------TPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPP 125 (186)
T ss_pred ------------------------------------CcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECC
Confidence 89999999999999999999999998887541122 89999999
Q ss_pred CHHHHHHHHHhcCCCCCchhhh
Q psy16959 342 PFELLKQKRIRRGDNFKTGTAQ 363 (366)
Q Consensus 342 ~~~~l~~~~~~r~~~~~~~~~~ 363 (366)
|.+.+.+|+.+|++. ....++
T Consensus 126 s~e~l~~RL~~R~~~-s~e~i~ 146 (186)
T PRK14737 126 SEEEWEERLIHRGTD-SEESIE 146 (186)
T ss_pred CHHHHHHHHHhcCCC-CHHHHH
Confidence 999999999999875 333343
No 5
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.95 E-value=8.2e-28 Score=215.86 Aligned_cols=137 Identities=46% Similarity=0.858 Sum_probs=131.2
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGL 182 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~ 182 (366)
+|+|+|+||+||||++|+.+|++. |+.|..++++|||+||++|.+|++|+|+|.++|+++++.|.|+++++++|++||
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YG- 80 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYG- 80 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcc-
Confidence 589999999999999999999986 668999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhh
Q psy16959 183 RTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKE 262 (366)
Q Consensus 183 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~ 262 (366)
T Consensus 81 -------------------------------------------------------------------------------- 80 (184)
T smart00072 81 -------------------------------------------------------------------------------- 80 (184)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCC
Q psy16959 263 LGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPP 342 (366)
Q Consensus 263 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~ 342 (366)
++.++++.+++++++|+++++|.++..++.....|++||+.|++
T Consensus 81 ------------------------------------t~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s 124 (184)
T smart00072 81 ------------------------------------TSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPS 124 (184)
T ss_pred ------------------------------------cCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcC
Confidence 89999999999999999999999999999888899999999999
Q ss_pred HHHHHHHHHhcCCCC
Q psy16959 343 FELLKQKRIRRGDNF 357 (366)
Q Consensus 343 ~~~l~~~~~~r~~~~ 357 (366)
.+.|++|+..|++..
T Consensus 125 ~~~l~~rl~~R~~~~ 139 (184)
T smart00072 125 SEELERRLRGRGTET 139 (184)
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999999999863
No 6
>PLN02772 guanylate kinase
Probab=99.94 E-value=4.3e-26 Score=223.49 Aligned_cols=149 Identities=33% Similarity=0.620 Sum_probs=137.2
Q ss_pred ceeeecccc-CCC-CCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhc
Q psy16959 91 YEEVSLYYP-RSN-EKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILAR 167 (366)
Q Consensus 91 YE~V~~~~~-~~~-~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g 167 (366)
=|+|..+.+ .+. ..++++|+|||||||++|+++|+++ +..|.++++||||+||++|.+|++|||++.++|+++++.|
T Consensus 120 ~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g 199 (398)
T PLN02772 120 GTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDG 199 (398)
T ss_pred cceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhC
Confidence 467887764 233 6789999999999999999999876 6679999999999999999999999999999999999999
Q ss_pred ceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeee
Q psy16959 168 KFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAH 247 (366)
Q Consensus 168 ~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl 247 (366)
.|+||++++|++||
T Consensus 200 ~FlE~~e~~Gn~YG------------------------------------------------------------------ 213 (398)
T PLN02772 200 KFLEFASVHGNLYG------------------------------------------------------------------ 213 (398)
T ss_pred ccceeeeecCcccc------------------------------------------------------------------
Confidence 99999999999999
Q ss_pred cCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccc
Q psy16959 248 FDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILR 327 (366)
Q Consensus 248 ~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~ 327 (366)
|+.++++.++++|++|+|++++++++.++
T Consensus 214 ---------------------------------------------------Tsk~~V~~vl~~Gk~vILdLD~qGar~Lr 242 (398)
T PLN02772 214 ---------------------------------------------------TSIEAVEVVTDSGKRCILDIDVQGARSVR 242 (398)
T ss_pred ---------------------------------------------------ccHHHHHHHHHhCCcEEEeCCHHHHHHHH
Confidence 89999999999999999999999998888
Q ss_pred cCCCCcEEEEEeCCCHHHHHHHHHhcCCC
Q psy16959 328 SSDLKPFVIFVAPPPFELLKQKRIRRGDN 356 (366)
Q Consensus 328 ~~~~~p~vi~~~~~~~~~l~~~~~~r~~~ 356 (366)
...+.+++||+.|++.++|++|+..|++.
T Consensus 243 ~~~l~~v~IFI~PPSlEeLe~RL~~RGte 271 (398)
T PLN02772 243 ASSLEAIFIFICPPSMEELEKRLRARGTE 271 (398)
T ss_pred HhcCCeEEEEEeCCCHHHHHHHHHhcCCC
Confidence 66678999999999999999999999885
No 7
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=99.93 E-value=6.2e-28 Score=230.85 Aligned_cols=195 Identities=11% Similarity=0.060 Sum_probs=152.8
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCCcceeeecc---------CCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEE
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHT---------SRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGE 174 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~t---------Tr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~ 174 (366)
+++|+|+||||||||.|+..|++. +...++++.. |++|+..|..+++||+++..++.+.++.+.|.+.+
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a- 81 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEA- 81 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHH-
Confidence 458999999999999999999988 4444444433 99999999999999999999999999999998887
Q ss_pred EecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---CC
Q psy16959 175 YEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---YD 251 (366)
Q Consensus 175 ~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~~ 251 (366)
...+.++.++|+.|+ +|||||||++|++. ..
T Consensus 82 -------~~~i~~i~~~gk~Pi---------------------------------------lvGGTglYi~all~gl~~~ 115 (300)
T PRK14729 82 -------LKIIKELRQQKKIPI---------------------------------------FVGGSAFYFKHLKYGLPST 115 (300)
T ss_pred -------HHHHHHHHHCCCCEE---------------------------------------EEeCchHHHHHHHcCCCCC
Confidence 777888889999999 99999999999954 34
Q ss_pred CCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhhccccCC
Q psy16959 252 PEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSD 330 (366)
Q Consensus 252 p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~ 330 (366)
|+.+..+|.+ +.......+..++..++...|| +++.++++|.+|++||+|++.+++.|.+........
T Consensus 116 p~~~~~~r~~-----------~~~~~~~~g~~~l~~~L~~~DP~~A~~i~pnd~~Ri~RALEv~~~tG~~~s~~~~~~~~ 184 (300)
T PRK14729 116 PPVSSKIRIY-----------VNNLFTLKGKSYLLEELKRVDFIRYESINKNDIYRIKRSLEVYYQTGIPISQFLKKQNM 184 (300)
T ss_pred CCCCHHHHHH-----------HHHHHHhcCHHHHHHHHHhcCHHHHhhCCcCCHHHHHHHHHHHHHhCCChHhhhhccCC
Confidence 5444444443 2222233445556667777777 888899999999999999999999996542212122
Q ss_pred CCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959 331 LKPFVIFVAPPPFELLKQKRIRRGDNF 357 (366)
Q Consensus 331 ~~p~vi~~~~~~~~~l~~~~~~r~~~~ 357 (366)
.+.++++...++++.|++||++|-+.+
T Consensus 185 ~~~~~~i~l~~~r~~L~~rI~~Rv~~M 211 (300)
T PRK14729 185 FKNILAIGLKRPMEEMKSRIISRVNNM 211 (300)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 355666666789999999999997653
No 8
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=99.92 E-value=6.3e-27 Score=225.40 Aligned_cols=197 Identities=18% Similarity=0.152 Sum_probs=152.7
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCC---------cceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEE
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDR---------FAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHG 173 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~---------~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~ 173 (366)
++++|+|+||||||||+|+..|++..+. +...++++|++|+++|++|++|||++..+|.+.++.+.|++++
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a 82 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA 82 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH
Confidence 4578999999999999999999987654 3445678999999999999999999999999999999999987
Q ss_pred EEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---C
Q psy16959 174 EYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---Y 250 (366)
Q Consensus 174 ~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~ 250 (366)
...+.+++++|+.++ ++||+|||++|++. .
T Consensus 83 --------~~~i~~i~~~gk~pI---------------------------------------lvGGt~~Y~~al~~g~~~ 115 (307)
T PRK00091 83 --------LAAIADILARGKLPI---------------------------------------LVGGTGLYIKALLEGLSP 115 (307)
T ss_pred --------HHHHHHHHhCCCCEE---------------------------------------EECcHHHHHHHhccCCCC
Confidence 777778889999999 89999999999954 3
Q ss_pred CCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhhcc-cc
Q psy16959 251 DPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLKIL-RS 328 (366)
Q Consensus 251 ~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l-~~ 328 (366)
.|+.+..++.. +.......+...+..++...|| +++.++++|.+|++||+|++..++.|.+.... ..
T Consensus 116 ~p~~~~~~r~~-----------l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~~d~~Ri~RAlEi~~~tG~~~s~~~~~~~ 184 (307)
T PRK00091 116 LPPADPELRAE-----------LEALAAEEGWEALHAELAEIDPEAAARIHPNDPQRIIRALEVYELTGKPLSELQKRGK 184 (307)
T ss_pred CCCCCHHHHHH-----------HHHHHHhcCHHHHHHHHHhcCHHHHhhcCCCCCchhHHHHHHHHHHCCChhhhhhccc
Confidence 44444433333 2222222333344556666677 88889999999999999999999999554211 11
Q ss_pred CCCCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959 329 SDLKPFVIFVAPPPFELLKQKRIRRGDNF 357 (366)
Q Consensus 329 ~~~~p~vi~~~~~~~~~l~~~~~~r~~~~ 357 (366)
...+..+++...++++.|++||++|-+..
T Consensus 185 ~~~~~~~~~~l~~dr~~L~~rI~~Rv~~M 213 (307)
T PRK00091 185 PPPYRVLIIGLDPDREELYERINQRVDQM 213 (307)
T ss_pred cCCCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 22345556666689999999999997643
No 9
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=99.92 E-value=8.8e-27 Score=221.79 Aligned_cols=194 Identities=18% Similarity=0.127 Sum_probs=145.8
Q ss_pred cEEEeCCCCCChHHHHHHHHhccCCcceee---------eccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEe
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSDRFAAAI---------PHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYE 176 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~---------~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~ 176 (366)
+|+|+||||||||+|+..|++..+...+++ +.+|++|+++|+++++||+++..++.+.++.+.|...+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a--- 77 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLA--- 77 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHH---
Confidence 579999999999999999998765433444 77899999999999999999999999888888876665
Q ss_pred cccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---CCCC
Q psy16959 177 KSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---YDPE 253 (366)
Q Consensus 177 g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~~p~ 253 (366)
...+.+++++|+.|| +|||||||++|++. ..|+
T Consensus 78 -----~~~i~~~~~~g~~pi---------------------------------------~vGGTg~Yi~all~g~~~~p~ 113 (287)
T TIGR00174 78 -----LNAIADITARGKIPL---------------------------------------LVGGTGLYLKALLEGLSPTPS 113 (287)
T ss_pred -----HHHHHHHHhCCCCEE---------------------------------------EEcCcHHHHHHHHcCCCCCCC
Confidence 566778889999999 99999999999954 3444
Q ss_pred CCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhhc-ccc-CC
Q psy16959 254 DDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLKI-LRS-SD 330 (366)
Q Consensus 254 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~-l~~-~~ 330 (366)
.|..++.+ +-..+...+. .+...++...|| ++..++++|.+|++||+|+|..++.|.+... ... ..
T Consensus 114 ~~~~~r~~----------l~~~~~~~g~-~~l~~~L~~~DP~~a~~i~~nd~~Ri~RALEi~~~tG~~~s~~~~~~~~~~ 182 (287)
T TIGR00174 114 ADKLIREQ----------LEILAEEQGW-DFLYNELKKVDPVAAAKIHPNDTRRVQRALEVFYATGKPPSELFKEQKIEL 182 (287)
T ss_pred CCHHHHHH----------HHHHHHHcCH-HHHHHHHHhcCHHHHHhcCCccHHHHHHHHHHHHHHCCChHHHhhccCCCC
Confidence 44434333 1122222333 334455556666 8888999999999999999999999955422 111 11
Q ss_pred CCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959 331 LKPFVIFVAPPPFELLKQKRIRRGDNF 357 (366)
Q Consensus 331 ~~p~vi~~~~~~~~~l~~~~~~r~~~~ 357 (366)
.+++.++...++++.|++||++|-+.+
T Consensus 183 ~~~~~~i~l~~dr~~L~~rI~~Rv~~M 209 (287)
T TIGR00174 183 FYDAVQIGLASSREPLHQRIEQRVHDM 209 (287)
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHH
Confidence 255555556689999999999996653
No 10
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=9.9e-26 Score=214.98 Aligned_cols=196 Identities=18% Similarity=0.153 Sum_probs=155.0
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCCcceeeecc---------CCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEE
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHT---------SRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGE 174 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~t---------Tr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~ 174 (366)
+++++|+||||||||.|+..|+++.+...++++.. |++|+..|..+++||.++..++.+.++++.|.+.+
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a- 81 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDA- 81 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHH-
Confidence 57899999999999999999999988777776644 99999999999999999999999999999999887
Q ss_pred EecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---CC
Q psy16959 175 YEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---YD 251 (366)
Q Consensus 175 ~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~~ 251 (366)
...+.++.++|+.|+ +|||||||++|++. ..
T Consensus 82 -------~~~i~~i~~rgk~pI---------------------------------------lVGGTglY~~aL~~g~~~~ 115 (308)
T COG0324 82 -------LAAIDDILARGKLPI---------------------------------------LVGGTGLYLKALLEGLSLL 115 (308)
T ss_pred -------HHHHHHHHhCCCCcE---------------------------------------EEccHHHHHHHHHcCCCCC
Confidence 788889999999999 99999999999954 57
Q ss_pred CCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhh-cc-c-
Q psy16959 252 PEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLK-IL-R- 327 (366)
Q Consensus 252 p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~-~l-~- 327 (366)
|..+...+.+ +...+...+... +...+...|| +++.|.++|.+|++|++||+.++++|.+.. .- +
T Consensus 116 p~~~~~~r~~----------~~~~~~~~g~~~-L~~~L~~~Dp~~a~~i~pnD~~Ri~RALEv~~~tGk~~s~~~~~~~~ 184 (308)
T COG0324 116 PEADPEVRRR----------LEAELAELGNDA-LHAELKKIDPEAAAKIHPNDPQRIIRALEVYYLTGKPISELQKRSRP 184 (308)
T ss_pred CCCCHHHHHH----------HHHHHHhcCHHH-HHHHHHhhCHHHHHhcCCCchhHHHHHHHHHHHHCCCHHHHhhcccC
Confidence 7777665554 111222222222 2233444444 777799999999999999999999996542 22 2
Q ss_pred cCCCCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959 328 SSDLKPFVIFVAPPPFELLKQKRIRRGDNF 357 (366)
Q Consensus 328 ~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~ 357 (366)
....+.+++++..++++.|++||++|-|..
T Consensus 185 ~~~~~~~~~~~l~~~r~~L~~rI~~R~d~M 214 (308)
T COG0324 185 ILEPYDILIIALAADREVLYERINRRVDAM 214 (308)
T ss_pred CCCCcceEEEEEeCCHHHHHHHHHHHHHHH
Confidence 223566776666699999999999997753
No 11
>PLN02840 tRNA dimethylallyltransferase
Probab=99.90 E-value=2.6e-25 Score=220.43 Aligned_cols=199 Identities=17% Similarity=0.100 Sum_probs=151.6
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCCcc---------eeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEE
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFA---------AAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGE 174 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~---------~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~ 174 (366)
+.+|+|+||+|||||+|+..|++..+... ..++.+|++|+..|.++++||+++..++.+.++.+.|...+
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~~A- 99 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFDDA- 99 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHHHH-
Confidence 45789999999999999999998765322 33456799999999999999999999999999999998887
Q ss_pred EecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---CC
Q psy16959 175 YEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---YD 251 (366)
Q Consensus 175 ~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~~ 251 (366)
...+.+++++|+.|| +|||||||++|++. ..
T Consensus 100 -------~~~I~~i~~rgkiPI---------------------------------------vVGGTGlYl~aLl~G~~~~ 133 (421)
T PLN02840 100 -------RRATQDILNRGRVPI---------------------------------------VAGGTGLYLRWYIYGKPDV 133 (421)
T ss_pred -------HHHHHHHHhcCCCEE---------------------------------------EEcCccHHHHHHhcCCCCC
Confidence 777888999999999 99999999999954 34
Q ss_pred CCCCCCcchhhhccCccchhHHHHHhc----CChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhcc-
Q psy16959 252 PEDDMYIPCKELGMSFQKGDILHVISQ----DDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKIL- 326 (366)
Q Consensus 252 p~~d~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l- 326 (366)
|..+..++.+ +...+.. .+.+.++..++...||.++.|+++|.+|++||+||+..++.|.+....
T Consensus 134 p~~~~~~r~~----------l~~~l~~~~~~~g~~~l~~~Ll~~~DP~A~~i~pnD~~Ri~RALEV~~~TG~~~S~~~~~ 203 (421)
T PLN02840 134 PKSSPEITSE----------VWSELVDFQKNGDWDAAVELVVNAGDPKARSLPRNDWYRLRRSLEIIKSSGSPPSAFSLP 203 (421)
T ss_pred CCCCHHHHHH----------HHHHHHHhccccCHHHHHHHHHhccCcHHHhcCCCcHHHHHHHHHHHHHHCCCHHHhhcc
Confidence 5555444433 1122222 112334445566656688889999999999999999999999554211
Q ss_pred ------c-------------c----CCCCcEEEEEeCCCHHHHHHHHHhcCCCCCc
Q psy16959 327 ------R-------------S----SDLKPFVIFVAPPPFELLKQKRIRRGDNFKT 359 (366)
Q Consensus 327 ------~-------------~----~~~~p~vi~~~~~~~~~l~~~~~~r~~~~~~ 359 (366)
. . ...|.+++|...++|+.|++||++|-+.+-.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~L~~dR~~Ly~RI~~Rvd~Ml~ 259 (421)
T PLN02840 204 YDSFREQLVTEDTDSSLEDGSSAETELDYDFLCFFLSSPRLDLYRSIDLRCEEMLA 259 (421)
T ss_pred ccchhhccccccccccccccccccCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 0 1 1125566666678999999999999776544
No 12
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.90 E-value=3.6e-23 Score=189.16 Aligned_cols=140 Identities=26% Similarity=0.498 Sum_probs=127.3
Q ss_pred CCCCCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccc
Q psy16959 100 RSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSY 179 (366)
Q Consensus 100 ~~~~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~ 179 (366)
.|..+++|+|+||+|||||||+..|.+....+.+++++|||+|+++|.+|.+|||+|.++|.+++..|.|++|+++.|++
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~ 88 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY 88 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence 45577899999999999999999998775578899999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcc
Q psy16959 180 YGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIP 259 (366)
Q Consensus 180 YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~ 259 (366)
||
T Consensus 89 YG------------------------------------------------------------------------------ 90 (206)
T PRK14738 89 YG------------------------------------------------------------------------------ 90 (206)
T ss_pred ec------------------------------------------------------------------------------
Confidence 99
Q ss_pred hhhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEe
Q psy16959 260 CKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVA 339 (366)
Q Consensus 260 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~ 339 (366)
|+.+.++.++++|++|+++++..++..++......++||+.
T Consensus 91 ---------------------------------------t~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~ 131 (206)
T PRK14738 91 ---------------------------------------VPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLA 131 (206)
T ss_pred ---------------------------------------CCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEe
Confidence 89999999999999999999998887777543344778888
Q ss_pred CCCHHHHHHHHHhcCCC
Q psy16959 340 PPPFELLKQKRIRRGDN 356 (366)
Q Consensus 340 ~~~~~~l~~~~~~r~~~ 356 (366)
|++.++|.+|+..|+++
T Consensus 132 pps~e~l~~Rl~~R~~~ 148 (206)
T PRK14738 132 PPSMDELTRRLELRRTE 148 (206)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 89999999999999875
No 13
>KOG3580|consensus
Probab=99.87 E-value=2.2e-23 Score=207.19 Aligned_cols=339 Identities=18% Similarity=0.270 Sum_probs=221.6
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEee-ccCcc-----cccccccC---
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMG-REAWK-----TSHAFRHT--- 78 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~~-~~~w~-----ps~~~~~~--- 78 (366)
+..|||..+...|.|.+.|.|+.||.||.|||+...+++..++..+|..+.|.+.++. ...-| |+-.-...
T Consensus 218 gSqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~qtLiNiP~l~d~dSe~~ 297 (1027)
T KOG3580|consen 218 GSQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQTLINIPSLNDSDSEIE 297 (1027)
T ss_pred cchhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCceeeecCCCcccccccc
Confidence 4578999999999999999999999999999999999999999999999999988762 11111 11110000
Q ss_pred --------ccCccCc----ccc--ccceeeecccc-CCCC--CCc--EEEeCCCCCChHHHHHHHHhcc-CCcceeeecc
Q psy16959 79 --------EHTHFDV----DEI--LTYEEVSLYYP-RSNE--KRP--IVLIGPPNIGRHELRQRLMEDS-DRFAAAIPHT 138 (366)
Q Consensus 79 --------~~~~~~~----~~~--~~YE~V~~~~~-~~~~--~r~--ivL~GpsgsGK~~L~~~L~~~~-~~~~~~~~~t 138 (366)
....|++ +.. ..|..-....| .|.. ..+ +-=.|.+- |. ++.+ +.-..+++.+
T Consensus 298 disEi~tms~rs~spp~rrs~~~s~d~~s~s~h~p~~Ps~r~~~~~R~s~~gat~---tP-----vks~~d~~~~~V~e~ 369 (1027)
T KOG3580|consen 298 DISEIETMSDRSFSPPERRSQYSSYDYHSSSEHLPERPSSREDTPSRLSRMGATP---TP-----VKSTGDIAGTVVPET 369 (1027)
T ss_pred chhhhhccccccCCCchhhhhccCccccCchhcCCCCCCccccchhhcccCCCCC---CC-----ccCccccCCcccccc
Confidence 0000000 000 01111111111 1111 000 00011110 00 0000 1112334444
Q ss_pred CCCCC-------CCCCCC-cceeecCHHHHHHHH----------HhcceeEEEEE---------ecccccchhhhhHHhc
Q psy16959 139 SRPMK-------DGEVDG-QDYHFITRAQFELDI----------LARKFIEHGEY---------EKSYYGLRTKLDKLQA 191 (366)
Q Consensus 139 Tr~pr-------~~E~~g-~~y~~vs~~ef~~~~----------~~g~fle~~~~---------~g~~YG~~~~~~~~~~ 191 (366)
|-.|+ +.+..+ ..|...|.+.|...- ..|.-+-..-. .|...|.++..+-|+.
T Consensus 370 t~e~~~~q~p~lP~pk~~~~~~~~pS~~~m~~ygysP~tk~VrF~KGdSvGLRLAGGNDVGIFVaGvqegspA~~eGlqE 449 (1027)
T KOG3580|consen 370 TKEPRYQQEPPLPQPKAAPRTFLRPSPEDMAIYGYSPNTKMVRFKKGDSVGLRLAGGNDVGIFVAGVQEGSPAEQEGLQE 449 (1027)
T ss_pred ccCcccccCCCCCCcccCcceeeecCHHHHHHhcCCCCceeEEeecCCeeeeEeccCCceeEEEeecccCCchhhccccc
Confidence 43333 222212 223445555543221 12222222222 2344556677788999
Q ss_pred CCCeeeee---cccccccccccccCCCcccccc-ceecccccccccccccC-CCeeeeeeecCCCCCCCCCcchhhhccC
Q psy16959 192 GIPTLNFD---IYALTETWLTDEINDPELGFSK-FNVFRSDRTKQTSHKSD-GGGMHVIAHFDYDPEDDMYIPCKELGMS 266 (366)
Q Consensus 192 g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-G~glYirAl~~~~p~~d~~~~~~~~~~~ 266 (366)
|..++.+| |+++.++.++.|+++.+.+... +-.+++..++..+..+| |++||||.+|.++++++. +|+
T Consensus 450 GDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~k~Dvyr~iv~s~vGDSFyIRtHFE~Eke~P~-------gL~ 522 (1027)
T KOG3580|consen 450 GDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQSKADVYRDIVASGVGDSFYIRTHFECEKETPQ-------GLA 522 (1027)
T ss_pred cceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhhhhHHHHHHHhccCCceeEEeeeeeecCCCCc-------ccc
Confidence 99999887 9999999999999998888776 77888999999999999 999999999999999887 899
Q ss_pred ccchhHHHHHhc---CChhhHHHHHccc----------------------------------------------------
Q psy16959 267 FQKGDILHVISQ---DDPNWWQAYREGE---------------------------------------------------- 291 (366)
Q Consensus 267 ~~~g~~~~~~~~---~~~~~~~~~~~~~---------------------------------------------------- 291 (366)
|..||+++++++ +....|++-+.++
T Consensus 523 FtrGeVFrvvDTLy~GklG~WLAvRiG~dlrE~ErGiIPNksRAEQlASvq~aqr~~agGdRAdFWR~RGlRsg~Kknlr 602 (1027)
T KOG3580|consen 523 FTRGEVFRVVDTLYDGKLGNWLAVRIGNDLRELERGIIPNKSRAEQLASVQNAQRDNAGGDRADFWRMRGLRSGVKKNLR 602 (1027)
T ss_pred ccccceeeeeecccCCCCcceEEEeecccHHHHhcccCCCccHHHHHHHHHhhccccccchHHHHHHHhhhhhhhhhhhh
Confidence 999999998877 5555565532111
Q ss_pred --------------Ccc---------------------------------------------------cccCCChHHHHH
Q psy16959 292 --------------EDH---------------------------------------------------TLAGTSLDAIRT 306 (366)
Q Consensus 292 --------------~~~---------------------------------------------------~~~~i~~~~i~~ 306 (366)
+++ +.-.|+++.|+.
T Consensus 603 kSREDLsA~~vqtkfPaYERVvLREAgFkRPVvifGPiADiAmeKLa~E~PD~fqiAkteprdag~~~stg~irL~Tvrq 682 (1027)
T KOG3580|consen 603 KSREDLSAVVVQTKFPAYERVVLREAGFKRPVVIFGPIADIAMEKLANELPDWFQIAKTEPRDAGSEKSTGVIRLNTVRQ 682 (1027)
T ss_pred hhhhhhhhceecccCCchhhhhhhhhcccCceEEeccHHHHHHHHHhhhCcchhhhhccccccCCcccccceEEehhhHH
Confidence 000 125589999999
Q ss_pred HHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCCCCCchhh
Q psy16959 307 VVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGDNFKTGTA 362 (366)
Q Consensus 307 vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~~~~~~ 362 (366)
||+..||++||++|+++++||+.++||||||..|.++.-+|. ...|.+......+
T Consensus 683 iieqDKHALLDVTP~AvdrLNY~QwypIVvff~PdSrqgvkt-mRqrL~P~Sr~Ss 737 (1027)
T KOG3580|consen 683 IIEQDKHALLDVTPKAVDRLNYTQWYPIVVFFNPDSRQGVKT-MRQRLAPTSRKSS 737 (1027)
T ss_pred HHhcccchhhccCHHHHhhhccceeeeEEEEeCCcchHHHHH-HHHHhCcccchhH
Confidence 999999999999999999999999999999999999999986 4456655554443
No 14
>PLN02748 tRNA dimethylallyltransferase
Probab=99.86 E-value=2e-23 Score=210.15 Aligned_cols=198 Identities=13% Similarity=0.070 Sum_probs=148.0
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhccCCcceeee---------ccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEE
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIP---------HTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEH 172 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~---------~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~ 172 (366)
..+++|+|+||||||||+|+..|++..+...++.+ ..|++|...|..+++||+++..++.+.++.+.|...
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~ 99 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDH 99 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHH
Confidence 35568999999999999999999988664444444 459999999999999999999999999999999888
Q ss_pred EEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC-CC
Q psy16959 173 GEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD-YD 251 (366)
Q Consensus 173 ~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~-~~ 251 (366)
+ ...+.+++++|+.|| +||||||||+||+. +.
T Consensus 100 A--------~~~I~~I~~rgk~PI---------------------------------------lVGGTglYi~aLl~g~~ 132 (468)
T PLN02748 100 A--------VPLIEEILSRNGLPV---------------------------------------IVGGTNYYIQALVSPFL 132 (468)
T ss_pred H--------HHHHHHHHhcCCCeE---------------------------------------EEcChHHHHHHHHcCcc
Confidence 7 788889999999999 99999999999964 21
Q ss_pred ----CCCCC--------CcchhhhccCccchhH--HHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEE
Q psy16959 252 ----PEDDM--------YIPCKELGMSFQKGDI--LHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVL 316 (366)
Q Consensus 252 ----p~~d~--------~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l 316 (366)
|..+. .++.+ + ...+...+.. .+..++...|| ++..++++|.+||+|++||+..
T Consensus 133 ~~~~p~~~~~~~~~~~~~~r~~----------l~~~~~~~~~g~~-~l~~~L~~vDP~~A~rihpnD~rRI~RALEI~~~ 201 (468)
T PLN02748 133 LDDMAEETEDCTFVVASVLDEH----------MDVESGLGNDDED-HGYELLKELDPVAANRIHPNNHRKINRYLELYAT 201 (468)
T ss_pred cccCCccccccccccCHHHHHH----------HHHHHHHHhcCHH-HHHHHHHhhCHHHHhhcCCccHHHHHHHHHHHHH
Confidence 11110 01111 1 0122223333 34445666677 8888999999999999999999
Q ss_pred cccchhhh-cc-cc-------CCCCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959 317 NLHPQSLK-IL-RS-------SDLKPFVIFVAPPPFELLKQKRIRRGDNF 357 (366)
Q Consensus 317 ~~~p~~~~-~l-~~-------~~~~p~vi~~~~~~~~~l~~~~~~r~~~~ 357 (366)
++.|.+.. .- +. ...|..++|+...++++|++||++|-|.+
T Consensus 202 TG~~~S~~~~~~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~RI~~Rvd~M 251 (468)
T PLN02748 202 TGVLPSKLYQGKAAENWGRISNSRFDCCFICVDADTAVLDRYVNQRVDCM 251 (468)
T ss_pred HCcCHHHHhhhccccccccccCCCCceEEEEeCCCHHHHHHHHHHHHHHH
Confidence 99995542 11 10 11245556666689999999999997654
No 15
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.84 E-value=2.2e-20 Score=160.06 Aligned_cols=119 Identities=38% Similarity=0.706 Sum_probs=112.7
Q ss_pred cEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccchh
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRT 184 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~~ 184 (366)
+|+|+||||||||+|+..|++. +..+...+++|||+|+.+|.+|++|+|++..+|.+++..+.|++++++.+++||
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg--- 77 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYG--- 77 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEec---
Confidence 5899999999999999999987 567888999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhhc
Q psy16959 185 KLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELG 264 (366)
Q Consensus 185 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~~ 264 (366)
T Consensus 78 -------------------------------------------------------------------------------- 77 (137)
T cd00071 78 -------------------------------------------------------------------------------- 77 (137)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCC
Q psy16959 265 MSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPP 341 (366)
Q Consensus 265 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~ 341 (366)
+..+.+++++++|++|++++++.++..++.....+++||+.++
T Consensus 78 ----------------------------------~~~~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~ 120 (137)
T cd00071 78 ----------------------------------TSKAAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP 120 (137)
T ss_pred ----------------------------------CcHHHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeEEEEEECC
Confidence 7788999999999999999999999999988889999999987
No 16
>KOG0707|consensus
Probab=99.83 E-value=2.3e-20 Score=169.70 Aligned_cols=139 Identities=34% Similarity=0.685 Sum_probs=130.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG 181 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG 181 (366)
.-++++|+||+|+||++|..+|.++ +..|+++++||||.||.+|++|++|||++..+|+.++..+.|+|++++.|++||
T Consensus 36 ~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yG 115 (231)
T KOG0707|consen 36 DFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYG 115 (231)
T ss_pred CCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCC
Confidence 3389999999999999999999987 556999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchh
Q psy16959 182 LRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCK 261 (366)
Q Consensus 182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~ 261 (366)
T Consensus 116 -------------------------------------------------------------------------------- 115 (231)
T KOG0707|consen 116 -------------------------------------------------------------------------------- 115 (231)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCC
Q psy16959 262 ELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPP 341 (366)
Q Consensus 262 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~ 341 (366)
++..++++++..|++|+|++.-+++...+...+.++.||+.|+
T Consensus 116 -------------------------------------tsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pp 158 (231)
T KOG0707|consen 116 -------------------------------------TSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPP 158 (231)
T ss_pred -------------------------------------chHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCC
Confidence 6778999999999999999999999888888899999999999
Q ss_pred CHHHHHHHHHhcCCCCC
Q psy16959 342 PFELLKQKRIRRGDNFK 358 (366)
Q Consensus 342 ~~~~l~~~~~~r~~~~~ 358 (366)
+-..+.+|+..||...+
T Consensus 159 s~~~~e~rl~~rgte~~ 175 (231)
T KOG0707|consen 159 SIKILEERLRARGTETE 175 (231)
T ss_pred cchhHHHHhhccCcchH
Confidence 99999999999976543
No 17
>KOG0708|consensus
Probab=99.81 E-value=6.3e-20 Score=176.29 Aligned_cols=142 Identities=30% Similarity=0.542 Sum_probs=128.9
Q ss_pred ccccccceeeeccccCCCCCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHH
Q psy16959 85 VDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163 (366)
Q Consensus 85 ~~~~~~YE~V~~~~~~~~~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~ 163 (366)
....++||.|.++ .+...|||+|+||. |..|...|..+ |+.|..|+++||++. .++|++.
T Consensus 170 e~~~lsY~~V~~~--~~~~~RPVlilg~~---~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~eme~~ 230 (359)
T KOG0708|consen 170 ELSLLSYELVERL--DSNYLRPVLILGPL---LDRLLDNLVNEFPDKFKSCLPETLRPS--------------REEMERD 230 (359)
T ss_pred ccccccchhhhhh--hccccCceEeccch---HHHHHHHHHHhhhccccccchhhhccc--------------HHHhhhh
Confidence 4567899999998 67899999999998 88899999887 899999999999885 7899999
Q ss_pred HHhcceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeee
Q psy16959 164 ILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMH 243 (366)
Q Consensus 164 ~~~g~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glY 243 (366)
++.+.|++++++++++||
T Consensus 231 ~k~~~fI~~~q~~~~~~~-------------------------------------------------------------- 248 (359)
T KOG0708|consen 231 SKEETFIDAGQRSNGLYG-------------------------------------------------------------- 248 (359)
T ss_pred cccCceeeecccCCCcce--------------------------------------------------------------
Confidence 999999999999999999
Q ss_pred eeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhh
Q psy16959 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSL 323 (366)
Q Consensus 244 irAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~ 323 (366)
++..+|+.++..|+||+|++...++
T Consensus 249 -------------------------------------------------------tsv~si~~va~k~~HCiLdv~~~ai 273 (359)
T KOG0708|consen 249 -------------------------------------------------------TSVASIREVAEKGKHCLLDVGGDAI 273 (359)
T ss_pred -------------------------------------------------------ehHHHHHHHhcCCCceEEecCcchH
Confidence 8999999999999999999999999
Q ss_pred hccccCCCCcEEEEEeCCCHHHHHHHHHhcCCCCCchhhhhhC
Q psy16959 324 KILRSSDLKPFVIFVAPPPFELLKQKRIRRGDNFKTGTAQAQY 366 (366)
Q Consensus 324 ~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~ 366 (366)
++|...++|||||||.+.+.+.++++. +..+..+|+++|
T Consensus 274 ~rLq~~~IyPIvIfIr~ks~~~i~e~~----~~~t~~~ake~~ 312 (359)
T KOG0708|consen 274 RRLQRNQIYPIVIFIRVKSKKQIKERN----LKITGEQAKELL 312 (359)
T ss_pred HHHHhcceeceEEEEEechHHHHHHHh----cccchHHHHHHH
Confidence 999999999999999999999999877 555566676665
No 18
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.80 E-value=1.1e-18 Score=155.15 Aligned_cols=135 Identities=32% Similarity=0.580 Sum_probs=123.1
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccchh
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRT 184 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~~ 184 (366)
++++|+||+|||||||++.|++..+.+...+++|||+|+.++.++.+|+|++.++|...+..+.|+++..+.++.||
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~--- 78 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYG--- 78 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeC---
Confidence 68999999999999999999987555777889999999999999999999999999999999999999999999999
Q ss_pred hhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhhc
Q psy16959 185 KLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELG 264 (366)
Q Consensus 185 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~~ 264 (366)
T Consensus 79 -------------------------------------------------------------------------------- 78 (180)
T TIGR03263 79 -------------------------------------------------------------------------------- 78 (180)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHH
Q psy16959 265 MSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFE 344 (366)
Q Consensus 265 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~ 344 (366)
+..+.+..++++|++|++++++.++..+...-..++.||+.+++.+
T Consensus 79 ----------------------------------~~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e 124 (180)
T TIGR03263 79 ----------------------------------TPKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLE 124 (180)
T ss_pred ----------------------------------CcHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHH
Confidence 7788999999999999999999888777655456789999999999
Q ss_pred HHHHHHHhcCCC
Q psy16959 345 LLKQKRIRRGDN 356 (366)
Q Consensus 345 ~l~~~~~~r~~~ 356 (366)
.+++|+.+|++.
T Consensus 125 ~~~~Rl~~r~~~ 136 (180)
T TIGR03263 125 ELERRLRKRGTD 136 (180)
T ss_pred HHHHHHHHcCCC
Confidence 999999999874
No 19
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.77 E-value=4.8e-18 Score=154.34 Aligned_cols=136 Identities=31% Similarity=0.524 Sum_probs=123.4
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGL 182 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~ 182 (366)
.+++|+|+||||||||||+..|+...+.+...+++|||+|+.+|.+|.+|++++.++|.+.+..+.|+++.++.++.||
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~- 82 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG- 82 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc-
Confidence 4578999999999999999999987557888899999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhh
Q psy16959 183 RTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKE 262 (366)
Q Consensus 183 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~ 262 (366)
T Consensus 83 -------------------------------------------------------------------------------- 82 (205)
T PRK00300 83 -------------------------------------------------------------------------------- 82 (205)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCC
Q psy16959 263 LGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPP 342 (366)
Q Consensus 263 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~ 342 (366)
+....+..++.+|.+|++++++.+...+...-..+++|++.+++
T Consensus 83 ------------------------------------~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s 126 (205)
T PRK00300 83 ------------------------------------TPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPS 126 (205)
T ss_pred ------------------------------------CcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcC
Confidence 67888999999999999999998886666543367889999899
Q ss_pred HHHHHHHHHhcCC
Q psy16959 343 FELLKQKRIRRGD 355 (366)
Q Consensus 343 ~~~l~~~~~~r~~ 355 (366)
.+.+.+|+..|++
T Consensus 127 ~~~l~~Rl~~R~~ 139 (205)
T PRK00300 127 LEELERRLRGRGT 139 (205)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999986
No 20
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=99.72 E-value=7.6e-20 Score=172.07 Aligned_cols=165 Identities=17% Similarity=0.128 Sum_probs=113.5
Q ss_pred eeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccccccC
Q psy16959 134 AIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEIN 213 (366)
Q Consensus 134 ~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 213 (366)
.++.-|++|+..|..+++||+++..++.+.++.+.|.+.+ .+.+.++.++|+.||
T Consensus 6 ~ldIgTaKps~~e~~~vpHhlid~~~p~e~ysv~~f~~~a--------~~~i~~i~~rgk~PI----------------- 60 (253)
T PF01715_consen 6 GLDIGTAKPSPEERAGVPHHLIDILDPDEEYSVGDFQRDA--------REAIEDILARGKIPI----------------- 60 (253)
T ss_dssp T-CTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHH--------HHHHHHHHHTT-EEE-----------------
T ss_pred CCceeeCCCCHHHHcCCCEeeeeeecccCCCCHHHHHHHH--------HHHHHHHHhcCCeEE-----------------
Confidence 3567799999999999999999999999999999999987 788889999999999
Q ss_pred CCccccccceecccccccccccccCCCeeeeeeecC---CCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcc
Q psy16959 214 DPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---YDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290 (366)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 290 (366)
+|||||||++|++. ..|+.|..++.+ +...+...+...+++ ++.
T Consensus 61 ----------------------lvGGTglYi~all~g~~~~p~~~~~~r~~----------~~~~~~~~~~~~l~~-~L~ 107 (253)
T PF01715_consen 61 ----------------------LVGGTGLYIQALLNGLADIPEVDPELRAE----------LRAELEEEGNEELYE-ELK 107 (253)
T ss_dssp ----------------------EEES-HHHHHHHHCTS--TSSSHHHHHHH----------HHHHHHHSCHHHHHH-HHH
T ss_pred ----------------------EECChHHHHHHHHhChhhhccccHHHHHH----------HHHHHHhccHHHHHH-HHH
Confidence 99999999999954 355555544443 223444444444444 455
Q ss_pred cCcc-cccCCChHHHHHHHHcCCeEEEcccchhh-hcc-ccCCCCcEEEEEeCCCHHHHHHHHHhcCCC
Q psy16959 291 EEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSL-KIL-RSSDLKPFVIFVAPPPFELLKQKRIRRGDN 356 (366)
Q Consensus 291 ~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~-~~l-~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~ 356 (366)
..|| ++..|+++|.+|++||++++..++.|.+. ... .....++..+|...++++.|++||++|-+.
T Consensus 108 ~~DP~~A~~i~~nd~~Ri~RALei~~~tG~~~s~~~~~~~~~~~~~~~~i~L~~~r~~L~~RI~~Rvd~ 176 (253)
T PF01715_consen 108 EVDPEAAAKIHPNDRRRIIRALEIYELTGKPPSEWQKKQKPPPRYDFLVIGLDRDREELYERINKRVDE 176 (253)
T ss_dssp HC-HHHHCTS-TT-HHHHHHHHHHHHHHSS-HHHHHHCHHHCBSSEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCcHhhhcCCCCcHHHHHHHHHHHHhcCCChhHhhhcccccccCCeEEEEeCCCHHHHHHHHHHHHHH
Confidence 5555 88999999999999999999999999554 333 233445666666669999999999999654
No 21
>PLN02165 adenylate isopentenyltransferase
Probab=99.52 E-value=2.4e-15 Score=145.52 Aligned_cols=100 Identities=12% Similarity=0.145 Sum_probs=79.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCccee---------eeccCCCCCCCCCCCcceeecCHHHHHH-HHHhcceeEE
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAA---------IPHTSRPMKDGEVDGQDYHFITRAQFEL-DILARKFIEH 172 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~---------~~~tTr~pr~~E~~g~~y~~vs~~ef~~-~~~~g~fle~ 172 (366)
.+++++|+||||||||+|+..|++..+....+ .+..|.+|...|..|++||+++...... .++.+.|...
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~~~ 121 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFRSL 121 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHHHH
Confidence 45689999999999999999999875433222 3455999999999999999998877665 5666677555
Q ss_pred EEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC
Q psy16959 173 GEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD 249 (366)
Q Consensus 173 ~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~ 249 (366)
+ ...+.++.++|+.|| ++||||||++||+.
T Consensus 122 a--------~~~I~~i~~~~~~PI---------------------------------------~vGGTglYi~aLl~ 151 (334)
T PLN02165 122 A--------SLSISEITSRQKLPI---------------------------------------VAGGSNSFIHALLA 151 (334)
T ss_pred H--------HHHHHHHHHCCCcEE---------------------------------------EECChHHHHHHHHc
Confidence 4 555667778999999 99999999999974
No 22
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.43 E-value=5.1e-13 Score=119.98 Aligned_cols=75 Identities=20% Similarity=0.279 Sum_probs=63.1
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc-CCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS-DRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG 181 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~-~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG 181 (366)
..+++|+||+|||||||++.|+... ..+......+|++++. .+.++++++.++|.++++.+.|.+++.++|++||
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg 77 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASA---GSENHIALSEQEFFTRAGQNLFALSWHANGLYYG 77 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccch---hHHhheeEcHHHHHHHHHCCchhhHHHHhCCccC
Confidence 4679999999999999999998763 3455566677887653 3567899999999999999999888899999999
No 23
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.42 E-value=3.1e-12 Score=113.73 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=64.5
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccC---CcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSD---RFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG 181 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~---~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG 181 (366)
++++|+||+|||||||++.|+.... ...+..++|||+++ .+|.+|++++.++|..+...+.|.++.++.+++||
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 4789999999999999999987532 24566789998864 56899999999999999999999999999999999
No 24
>KOG1384|consensus
Probab=99.24 E-value=2.7e-12 Score=122.30 Aligned_cols=100 Identities=15% Similarity=0.181 Sum_probs=88.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCccee---------eeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEE
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAA---------IPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHG 173 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~---------~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~ 173 (366)
..++|+|+|+||+|||.|+-.|+.+++...+. .+.+|.++...|..|++||.+....++..+.+++|-..+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a 85 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA 85 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence 45789999999999999999999876543333 346699999999999999999999999999999998887
Q ss_pred EEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC
Q psy16959 174 EYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD 249 (366)
Q Consensus 174 ~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~ 249 (366)
.+++.++.++|+.|+ ++||++.|++||+.
T Consensus 86 --------~~aie~I~~rgk~PI---------------------------------------v~GGs~~yi~al~~ 114 (348)
T KOG1384|consen 86 --------SRAIEEIHSRGKLPI---------------------------------------VVGGSNSYLQALLS 114 (348)
T ss_pred --------HHHHHHHHhCCCCCE---------------------------------------EeCCchhhHHHHhh
Confidence 889999999999999 99999999999975
No 25
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.19 E-value=2.4e-10 Score=98.99 Aligned_cols=91 Identities=23% Similarity=0.308 Sum_probs=74.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc---cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED---SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSY 179 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~---~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~ 179 (366)
+.+.|+++||||+||+||+..+... -..+.+.-...||+...+ +.+|.-+|..||++....|.|.-.++.+|..
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~ 80 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GEDHDALSEAEFNTRAGQGAFALSWQAHGLS 80 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCC---cccccccCHHHHHHHhhcCceeEEehhcCcc
Confidence 5789999999999999999988754 234778888889987543 5688999999999999999999999999999
Q ss_pred ccchhhh-hHHhcCCCee
Q psy16959 180 YGLRTKL-DKLQAGIPTL 196 (366)
Q Consensus 180 YG~~~~~-~~~~~g~~~~ 196 (366)
||+++.+ +++++|..++
T Consensus 81 Ygip~eId~wl~~G~vvl 98 (192)
T COG3709 81 YGIPAEIDLWLAAGDVVL 98 (192)
T ss_pred ccCchhHHHHHhCCCEEE
Confidence 9976644 4445555555
No 26
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.03 E-value=1e-09 Score=85.04 Aligned_cols=63 Identities=40% Similarity=0.564 Sum_probs=57.3
Q ss_pred CcEEEEeC----CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG----DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~----~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.... .++||+.+.++|||+++| |++||.|++|||.++.+++++++..+++.+.+.++|+
T Consensus 13 G~~l~~~~~~~~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~ 79 (81)
T PF00595_consen 13 GFTLRGGSDNDEKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLT 79 (81)
T ss_dssp SEEEEEESTSSSEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEE
T ss_pred CEEEEecCCCCcCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEE
Confidence 67777543 389999999999999999 9999999999999999999999999999999888775
No 27
>PRK08356 hypothetical protein; Provisional
Probab=99.00 E-value=5.1e-10 Score=101.27 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=67.2
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGL 182 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~ 182 (366)
.+|+|+||+||||+|++..|.+ . ++. .++++++.++..+.++.+|+|++..+|..+++.+.|++++++.+++||.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~-g~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~ 80 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-K-GFC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGE 80 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-C-CCc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCc
Confidence 4688999999999999999954 3 555 7889999888899999999999999999999999999999999999993
No 28
>KOG3550|consensus
Probab=98.96 E-value=1.2e-09 Score=92.75 Aligned_cols=59 Identities=27% Similarity=0.615 Sum_probs=56.6
Q ss_pred EeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 6 NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 6 ~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+..|||++++|||.|++.|.|+.||++++|||+++.+-.|+.++.+|+...|.+.|+
T Consensus 112 eqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklv 170 (207)
T KOG3550|consen 112 EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLV 170 (207)
T ss_pred ccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEE
Confidence 34689999999999999999999999999999999999999999999999999999998
No 29
>KOG3580|consensus
Probab=98.74 E-value=2.2e-08 Score=101.19 Aligned_cols=55 Identities=27% Similarity=0.445 Sum_probs=48.3
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~ 64 (366)
-||||+.|.+|+||++.| |+.||+||.||.+++.++..++|+..|...+ +.++++
T Consensus 429 VGIFVaGvqegspA~~eG-lqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtil 485 (1027)
T KOG3580|consen 429 VGIFVAGVQEGSPAEQEG-LQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTIL 485 (1027)
T ss_pred eeEEEeecccCCchhhcc-ccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeeh
Confidence 489999999999999999 9999999999999999999999998887653 444443
No 30
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.63 E-value=1.8e-07 Score=69.94 Aligned_cols=62 Identities=32% Similarity=0.535 Sum_probs=53.6
Q ss_pred CcEEEEeCC-eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC-cEEE
Q psy16959 1 GATIRNEGD-AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG-QEMT 63 (366)
Q Consensus 1 G~~i~~~~~-gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~-~v~l 63 (366)
|+.+..... +++|..+.++|||+.+| |++||+|++|||.++.+.+++++..+|+...+ .+.+
T Consensus 4 G~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l 67 (70)
T cd00136 4 GFSIRGGTEGGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTL 67 (70)
T ss_pred cEEEecCCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEE
Confidence 566665554 89999999999999988 99999999999999999999999999998763 4444
No 31
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.47 E-value=8e-07 Score=68.31 Aligned_cols=63 Identities=32% Similarity=0.543 Sum_probs=53.7
Q ss_pred CcEEEEeC---CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG---DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~---~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.... .+++|..+.++|||+++| |++||+|++|||.++..++++++...++...+.+++.
T Consensus 15 G~~~~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~ 80 (82)
T cd00992 15 GFSLRGGKDSGGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT 80 (82)
T ss_pred CEEEeCcccCCCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence 45554332 479999999999999988 9999999999999999999999999999877766553
No 32
>KOG0609|consensus
Probab=98.38 E-value=1.2e-07 Score=95.51 Aligned_cols=96 Identities=41% Similarity=0.758 Sum_probs=72.5
Q ss_pred cCCCeeeee---cccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhhccCc
Q psy16959 191 AGIPTLNFD---IYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSF 267 (366)
Q Consensus 191 ~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~ 267 (366)
.|..+.++| +.+.+++.+..-+-... |...|+++|+.| +..... -.|+||+|||.|..|+.+||++++|+|
T Consensus 167 ~GD~i~EvNGi~v~~~~~~e~q~~l~~~~-G~itfkiiP~~~--~~~~~~---~~~vra~FdYdP~~D~~IPCkEagl~F 240 (542)
T KOG0609|consen 167 VGDEILEVNGISVANKSPEELQELLRNSR-GSITFKIIPSYR--PPPQQQ---VVFVRALFDYDPKEDDLIPCKEAGLPF 240 (542)
T ss_pred eccchheecCeecccCCHHHHHHHHHhCC-CcEEEEEccccc--CCCcee---eeeehhhcCcCcccCCcccchhcCCcc
Confidence 344444444 33333444444444444 888899999877 111111 589999999999999999999999999
Q ss_pred cchhHHHHHhcCChhhHHHHHcccC
Q psy16959 268 QKGDILHVISQDDPNWWQAYREGEE 292 (366)
Q Consensus 268 ~~g~~~~~~~~~~~~~~~~~~~~~~ 292 (366)
+.||+++++++.+.+||+++..+..
T Consensus 241 ~~GDILqIv~qdD~nWWQA~~~~~~ 265 (542)
T KOG0609|consen 241 QRGDILQIVSQDDPNWWQARRVGDP 265 (542)
T ss_pred cccceeeeccCCCcchhhhhcccCc
Confidence 9999999999999999999888753
No 33
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.31 E-value=3.2e-06 Score=65.05 Aligned_cols=55 Identities=35% Similarity=0.506 Sum_probs=49.8
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++| |++||.|++|||..+.+.++.+...+++.....+.+.
T Consensus 26 ~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~ 80 (85)
T smart00228 26 GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLT 80 (85)
T ss_pred CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 689999999999999999 9999999999999999999999999998866566554
No 34
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.26 E-value=5e-06 Score=64.47 Aligned_cols=59 Identities=27% Similarity=0.552 Sum_probs=51.2
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCc
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~ 60 (366)
|+.+..+..+++|..+.++|||+++| |++||+|++|||..+.+.+++++...++...+.
T Consensus 5 G~~~~~~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~ 63 (85)
T cd00988 5 GLELKYDDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGT 63 (85)
T ss_pred EEEEEEcCCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCC
Confidence 55666667889999999999999998 999999999999999999889999888765443
No 35
>KOG3553|consensus
Probab=98.22 E-value=9.3e-07 Score=70.22 Aligned_cols=48 Identities=25% Similarity=0.366 Sum_probs=45.6
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~ 56 (366)
+.||||.+|.+||||+.+| |+.+|.|+.+||-++.-++|++|+.-|+.
T Consensus 58 D~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k 105 (124)
T KOG3553|consen 58 DKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITK 105 (124)
T ss_pred CccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhH
Confidence 4699999999999999999 99999999999999999999999998876
No 36
>KOG3571|consensus
Probab=98.20 E-value=2.1e-06 Score=85.76 Aligned_cols=68 Identities=22% Similarity=0.384 Sum_probs=61.8
Q ss_pred eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc---CCCcEEEeeccCcccccc
Q psy16959 7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG---LTGQEMTMGREAWKTSHA 74 (366)
Q Consensus 7 ~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~---~~~~v~l~~~~~w~ps~~ 74 (366)
.++||||+.|++||..+..|++.+||.||.||.+++++++.++|+.+|+. .+++++|+....|.|+.+
T Consensus 275 gDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk~~DP~~q 345 (626)
T KOG3571|consen 275 GDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAKCWDPNPQ 345 (626)
T ss_pred CCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEeeccCCCCc
Confidence 45899999999999999999999999999999999999999999999975 478899998888887653
No 37
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.17 E-value=8.5e-06 Score=63.19 Aligned_cols=58 Identities=40% Similarity=0.605 Sum_probs=45.6
Q ss_pred CcEEEEeCC--eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHH-HcCCCcE
Q psy16959 1 GATIRNEGD--AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL-VGLTGQE 61 (366)
Q Consensus 1 G~~i~~~~~--gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~L-k~~~~~v 61 (366)
|+.+..... +++|..|.++|||+++| |++||.|++|||..+. +..+....+ +...+..
T Consensus 4 Gv~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~ 64 (82)
T PF13180_consen 4 GVTVQNLSDTGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVN--SSEDLVNILSKGKPGDT 64 (82)
T ss_dssp SEEEEECSCSSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSE
T ss_pred CeEEEEccCCCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCE
Confidence 667776554 99999999999999999 9999999999999994 447777777 3444443
No 38
>KOG3209|consensus
Probab=98.12 E-value=2.3e-06 Score=88.31 Aligned_cols=52 Identities=31% Similarity=0.441 Sum_probs=50.3
Q ss_pred EEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 13 I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|.+|++||||++.|+|++||.|++|||+++.+++|.+++.+||.++.+|+|.
T Consensus 782 iGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKdaGlsVtLt 833 (984)
T KOG3209|consen 782 IGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDAGLSVTLT 833 (984)
T ss_pred ccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhcCceEEEE
Confidence 6789999999999999999999999999999999999999999999999987
No 39
>KOG3209|consensus
Probab=98.05 E-value=7.5e-06 Score=84.64 Aligned_cols=64 Identities=27% Similarity=0.368 Sum_probs=55.2
Q ss_pred CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|++|+. .+-++||-++.+.|||.+.|++++||+|++|||.+..+++|+.|+++||.....+.++
T Consensus 912 GFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~vll~ 978 (984)
T KOG3209|consen 912 GFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRRVLLL 978 (984)
T ss_pred ceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeEEEEE
Confidence 455652 2357899999999999999999999999999999999999999999999966666554
No 40
>KOG3549|consensus
Probab=97.98 E-value=8.4e-06 Score=78.19 Aligned_cols=64 Identities=30% Similarity=0.420 Sum_probs=57.7
Q ss_pred CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|++|+. .+-.|+|+++...-.|+..|.|.+||.|+.|||+.+...+|++++++|+..++.|++.
T Consensus 69 GLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlT 135 (505)
T KOG3549|consen 69 GLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLT 135 (505)
T ss_pred eeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEE
Confidence 456653 2357899999999999999999999999999999999999999999999999999887
No 41
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.97 E-value=1.1e-05 Score=71.46 Aligned_cols=58 Identities=22% Similarity=0.231 Sum_probs=37.1
Q ss_pred CChHHHHHHHHcCCeEEEcccchh---h-hcccc-CCCCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959 299 TSLDAIRTVVNAGKICVLNLHPQS---L-KILRS-SDLKPFVIFVAPPPFELLKQKRIRRGDNF 357 (366)
Q Consensus 299 i~~~~i~~vir~~k~~~l~~~p~~---~-~~l~~-~~~~p~vi~~~~~~~~~l~~~~~~r~~~~ 357 (366)
+..+.+.+..++|..++++..-.. . +..+. .....+.|++. ++.++|.+|+.+|++..
T Consensus 73 ~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~-~~~~~l~~R~~~R~~~~ 135 (175)
T cd00227 73 AWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVR-CPGEVAEGRETARGDRV 135 (175)
T ss_pred HHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEE-CCHHHHHHHHHhcCCcc
Confidence 455667888889999988854321 1 11111 22233556666 55799999999999764
No 42
>KOG3551|consensus
Probab=97.94 E-value=6.3e-06 Score=80.01 Aligned_cols=63 Identities=27% Similarity=0.452 Sum_probs=55.5
Q ss_pred CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEE
Q psy16959 1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMT 63 (366)
Q Consensus 1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l 63 (366)
|++|+. +.-.|.|+.+.+|-.|++++.|..||.|++|||.++...+|++++..||..+..|.+
T Consensus 99 GISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~l 164 (506)
T KOG3551|consen 99 GISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLL 164 (506)
T ss_pred eEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeee
Confidence 566662 345899999999999999999999999999999999999999999999997766655
No 43
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.84 E-value=5.5e-05 Score=57.89 Aligned_cols=43 Identities=33% Similarity=0.471 Sum_probs=38.6
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCC
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRG 44 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~ 44 (366)
|+.+...++++.|..|.++|+|+.+| |++||+|++|||..+.+
T Consensus 4 G~~~~~~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~ 46 (80)
T cd00990 4 GLTLDKEEGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA 46 (80)
T ss_pred cEEEEccCCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH
Confidence 56676667789999999999999999 99999999999999875
No 44
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=97.83 E-value=4.1e-05 Score=77.05 Aligned_cols=63 Identities=27% Similarity=0.510 Sum_probs=57.2
Q ss_pred CcEEEEeC-CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG-DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~-~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++...+ +++.|..+++|+||+++| |++||.|+.|||.++.+++.++++..|++..|+.+.+
T Consensus 103 G~~i~~~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L 166 (406)
T COG0793 103 GIELQMEDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTL 166 (406)
T ss_pred eEEEEEecCCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEE
Confidence 56777666 899999999999999999 9999999999999999999999999999988877654
No 45
>PRK11186 carboxy-terminal protease; Provisional
Probab=97.72 E-value=7.7e-05 Score=79.15 Aligned_cols=64 Identities=23% Similarity=0.500 Sum_probs=54.6
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcC-----EEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEING-----IEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg-----~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+.+...+++++|..|++||||++++.|++||.|+.||+ .++.+++.++++.+|++..|+.+.+
T Consensus 247 Ga~l~~~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~L 315 (667)
T PRK11186 247 GAVLQMDDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRL 315 (667)
T ss_pred EEEEEEeCCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEE
Confidence 567777778899999999999999844999999999994 4677899999999999988876554
No 46
>KOG3606|consensus
Probab=97.69 E-value=6.2e-05 Score=70.12 Aligned_cols=53 Identities=43% Similarity=0.758 Sum_probs=48.3
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcE
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQE 61 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v 61 (366)
.||||+++.+||.|+..|.|-+.|.+++|||+.|.+++.+|+..|+-.-...+
T Consensus 194 pGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANshNL 246 (358)
T KOG3606|consen 194 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANSHNL 246 (358)
T ss_pred CceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcccce
Confidence 58999999999999999999999999999999999999999999996644443
No 47
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.69 E-value=9.1e-05 Score=71.10 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCeEEEcccchhh---hcc----ccCCCCcEEEEEeCCCHHHHHHHHHhcCCCC-Cchhhhhh
Q psy16959 302 DAIRTVVNAGKICVLNLHPQSL---KIL----RSSDLKPFVIFVAPPPFELLKQKRIRRGDNF-KTGTAQAQ 365 (366)
Q Consensus 302 ~~i~~vir~~k~~~l~~~p~~~---~~l----~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~-~~~~~~~~ 365 (366)
+.++..+..++.++++..+... +.+ +..+....+|++. .+.+++.+|...|++++ .....+.|
T Consensus 66 ~~~~~~l~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~-~~~e~~~~R~~~R~~~~~~~~~i~~~ 136 (300)
T PHA02530 66 AAALAALKSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFD-VPVEELVKRNRKRGERAVPEDVLRSM 136 (300)
T ss_pred HHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeC-CCHHHHHHHHHccCcCCCCHHHHHHH
Confidence 3455667788889998776432 111 1223344456666 58999999999996543 44444433
No 48
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.69 E-value=0.00018 Score=55.45 Aligned_cols=47 Identities=30% Similarity=0.383 Sum_probs=41.2
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL 57 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~ 57 (366)
..|++|..|.++|||+++| |++||+|++|||..+.+ .++....|...
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~--~~d~~~~l~~~ 55 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT--LEDFMEALKPT 55 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC--HHHHHHHHhcC
Confidence 4689999999999999999 99999999999999974 46777777654
No 49
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.65 E-value=0.00015 Score=71.15 Aligned_cols=59 Identities=24% Similarity=0.529 Sum_probs=50.4
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCc
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~ 60 (366)
|+.+....++++|..|.++|||+++| |+.||+|++|||..+.+.+..++...+++..+.
T Consensus 54 G~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~ 112 (334)
T TIGR00225 54 GIQVGMDDGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGT 112 (334)
T ss_pred EEEEEEECCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCC
Confidence 44555556789999999999999999 999999999999999998888888888765444
No 50
>KOG1892|consensus
Probab=97.64 E-value=9.6e-05 Score=78.74 Aligned_cols=56 Identities=27% Similarity=0.391 Sum_probs=52.8
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
-||||..|.+||+|+..|+|..||+|+.|||.++.|++-+.|+.+|-.++..|+|-
T Consensus 960 lGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~le 1015 (1629)
T KOG1892|consen 960 LGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHLE 1015 (1629)
T ss_pred cceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEEEe
Confidence 48999999999999999999999999999999999999999999999888887774
No 51
>PRK06762 hypothetical protein; Provisional
Probab=97.59 E-value=0.00037 Score=60.88 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=23.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++++|+|+|++||||||++..|.+..
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999874
No 52
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.56 E-value=0.00023 Score=71.33 Aligned_cols=52 Identities=35% Similarity=0.532 Sum_probs=47.0
Q ss_pred eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEE
Q psy16959 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEM 62 (366)
Q Consensus 10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~ 62 (366)
+++|..|.++|||+++| |++||+|++|||.++.+.+..++..+|++..++..
T Consensus 103 g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v 154 (389)
T PLN00049 103 GLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSV 154 (389)
T ss_pred cEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEE
Confidence 79999999999999999 99999999999999999988899999987655543
No 53
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.53 E-value=0.00031 Score=53.43 Aligned_cols=47 Identities=34% Similarity=0.504 Sum_probs=40.4
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL 57 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~ 57 (366)
...++|+.+.++|+|.++| |++||+|++|||..+.+ .+++...+...
T Consensus 11 ~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~--~~~~~~~l~~~ 57 (79)
T cd00989 11 PIEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS--WEDLVDAVQEN 57 (79)
T ss_pred ccCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHHC
Confidence 3458999999999999999 99999999999999975 46777777664
No 54
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.37 E-value=0.00065 Score=52.84 Aligned_cols=54 Identities=28% Similarity=0.375 Sum_probs=42.4
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
.++++|..+.++|||+++| |++||.|++|||..+.+. .++...+... ...+.+.
T Consensus 23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~ 78 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLT 78 (90)
T ss_pred CCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEE
Confidence 3589999999999999999 999999999999999754 4566666554 3344443
No 55
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.36 E-value=0.0012 Score=50.58 Aligned_cols=49 Identities=24% Similarity=0.344 Sum_probs=40.7
Q ss_pred EEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc
Q psy16959 4 IRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56 (366)
Q Consensus 4 i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~ 56 (366)
++....|++|..|.++|||+. | |++||+|++|||..+.+ .+++...+..
T Consensus 3 ~~~~~~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~ 51 (79)
T cd00986 3 VDYTYHGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQS 51 (79)
T ss_pred eEEEecCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHh
Confidence 344556899999999999986 7 99999999999999974 5677777764
No 56
>KOG3651|consensus
Probab=97.36 E-value=0.00037 Score=65.97 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=51.9
Q ss_pred EEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 11 i~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
+||..|..++||.+.|+++.||.|+.|||+++.|.+--+++.+|+-+.+.|+..
T Consensus 32 lYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~Ih 85 (429)
T KOG3651|consen 32 LYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIH 85 (429)
T ss_pred EEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEE
Confidence 499999999999999999999999999999999999999999999999999876
No 57
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00062 Score=60.35 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=36.5
Q ss_pred CChHHHHHHHHcCCeEEEcccchhh-hccccCCCCcEEEEEeCCCHHHHHHHHHhcC
Q psy16959 299 TSLDAIRTVVNAGKICVLNLHPQSL-KILRSSDLKPFVIFVAPPPFELLKQKRIRRG 354 (366)
Q Consensus 299 i~~~~i~~vir~~k~~~l~~~p~~~-~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~ 354 (366)
++.++...+-..+.++.|+.++..+ ++++...-.|.+---+ +++.|++..++|.
T Consensus 84 ~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~--~~~~l~~L~~~R~ 138 (172)
T COG0703 84 LSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTED--PREELEELLEERQ 138 (172)
T ss_pred cCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCC--hHHHHHHHHHHHH
Confidence 4677777777788888899998544 7777455566654333 2566777777663
No 58
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.20 E-value=0.00089 Score=59.72 Aligned_cols=67 Identities=25% Similarity=0.308 Sum_probs=41.8
Q ss_pred CChHHHHHHHHcCCeEEEccc---ch-hhhccc-cCCCCcEEEEEeCCCHHHHHHHHHhcCCCCCchhhhhhC
Q psy16959 299 TSLDAIRTVVNAGKICVLNLH---PQ-SLKILR-SSDLKPFVIFVAPPPFELLKQKRIRRGDNFKTGTAQAQY 366 (366)
Q Consensus 299 i~~~~i~~vir~~k~~~l~~~---p~-~~~~l~-~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~ 366 (366)
.-...+....++|-.++.|.- +. ..+.++ ...-+|.++...-++.+++.+|=..|+|. ..|.|..||
T Consensus 71 ~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR-~~G~a~~q~ 142 (174)
T PF07931_consen 71 AMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDR-PIGLAAWQA 142 (174)
T ss_dssp HHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSS-STTHHHHHT
T ss_pred HHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCc-chHHHHHHH
Confidence 346788999999988877733 32 234452 23345655555558899999999999985 566676664
No 59
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.19 E-value=0.0011 Score=62.07 Aligned_cols=63 Identities=16% Similarity=0.299 Sum_probs=37.9
Q ss_pred hHHHHHHHHcCCeEEEcccchh--h-hccc----cCCCCcEEEEEeCCCHHHHHHHHHhcCCCCCchhhhh
Q psy16959 301 LDAIRTVVNAGKICVLNLHPQS--L-KILR----SSDLKPFVIFVAPPPFELLKQKRIRRGDNFKTGTAQA 364 (366)
Q Consensus 301 ~~~i~~vir~~k~~~l~~~p~~--~-~~l~----~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~~~~~~~~ 364 (366)
...+++.+.++..+++|..... . ..+. ..+..-.+|++. .+.+.+.+|...|+.....+...+
T Consensus 58 ~~~i~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~-~p~e~~~~Rn~~R~~~~~~~~i~~ 127 (249)
T TIGR03574 58 LYLIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLK-APLDTLLRRNIERGEKIPNEVIKD 127 (249)
T ss_pred HHHHHHHHhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEec-CCHHHHHHHHHhCCCCCCHHHHHH
Confidence 3456677777888888876521 1 1121 223333455665 668899999888887665554443
No 60
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.17 E-value=0.0005 Score=61.91 Aligned_cols=39 Identities=15% Similarity=-0.007 Sum_probs=28.0
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK 143 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr 143 (366)
++.|+|.|+.||||||+++.|.+.....+. ..++++.|+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~-~~~~~~~p~ 41 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGR-DVVFTREPG 41 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCC-ceeEeeCCC
Confidence 468999999999999999999986432222 224455554
No 61
>KOG3605|consensus
Probab=97.17 E-value=0.00021 Score=73.59 Aligned_cols=53 Identities=32% Similarity=0.589 Sum_probs=48.5
Q ss_pred EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
+|+.++++|||+++|+|-.||+|+.|||+++.+++...+...||+.+++..++
T Consensus 676 ViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~Vk 728 (829)
T KOG3605|consen 676 VIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVK 728 (829)
T ss_pred HHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEE
Confidence 55678899999999999999999999999999999999999999998876654
No 62
>PRK00098 GTPase RsgA; Reviewed
Probab=97.13 E-value=0.00043 Score=66.91 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=61.2
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCCcceee-------eccCCCCCCCCCC------------CcceeecCHHHHHHHH
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAI-------PHTSRPMKDGEVD------------GQDYHFITRAQFELDI 164 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~-------~~tTr~pr~~E~~------------g~~y~~vs~~ef~~~~ 164 (366)
.+.++|+|++|+|||||.+.|..........+ .|||+.++..+.+ +..+.+++.+++...+
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~f 243 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHYF 243 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHHH
Confidence 56899999999999999999986422212222 2688766554333 4556678888887777
Q ss_pred Hh-cceeEEEEEec-ccccchh--hhhHHhcCCCe
Q psy16959 165 LA-RKFIEHGEYEK-SYYGLRT--KLDKLQAGIPT 195 (366)
Q Consensus 165 ~~-g~fle~~~~~g-~~YG~~~--~~~~~~~g~~~ 195 (366)
.. ..+.....+.+ .+|+.+. +.+++..|...
T Consensus 244 ~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~g~i~ 278 (298)
T PRK00098 244 PEFRPLSGDCKFRNCTHLHEPGCAVKAAVEEGEIA 278 (298)
T ss_pred HHHHHHhCCCCCCCCcCCCCCCChHHHHHHcCCCC
Confidence 55 56666666666 5666543 44666766654
No 63
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.10 E-value=0.0026 Score=56.33 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=21.7
Q ss_pred cEEEeCCCCCChHHHHHHHHhccC
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+|+|+||+||||||++.+|++..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998764
No 64
>PLN02200 adenylate kinase family protein
Probab=97.06 E-value=0.0012 Score=61.59 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=28.4
Q ss_pred ccccceeeeccccCCCCCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 87 EILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 87 ~~~~YE~V~~~~~~~~~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
++.+.|.+..- |....+.+|+|+||+||||+|++.+|++..+
T Consensus 27 ~~~~~~~~~~~-~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 27 EIITLEERGSS-SKEKTPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred cccccccccCC-ccCCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34444544432 1222345678999999999999999998753
No 65
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.05 E-value=0.00099 Score=59.02 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=21.6
Q ss_pred CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++|+|+||+||||||++..|++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999764
No 66
>PRK14531 adenylate kinase; Provisional
Probab=96.99 E-value=0.0021 Score=57.36 Aligned_cols=26 Identities=27% Similarity=0.608 Sum_probs=22.5
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
++-|+|+||+||||||++..|++..+
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34589999999999999999998753
No 67
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.01 Score=52.07 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=38.4
Q ss_pred ChHHHHHHHHcCCeEEEcccchhh----hccccCCCCcEEEEEeCCCHHHHHHHHHh
Q psy16959 300 SLDAIRTVVNAGKICVLNLHPQSL----KILRSSDLKPFVIFVAPPPFELLKQKRIR 352 (366)
Q Consensus 300 ~~~~i~~vir~~k~~~l~~~p~~~----~~l~~~~~~p~vi~~~~~~~~~l~~~~~~ 352 (366)
-.+.++.++..++.++.+++-.+. ++++ ....+++|+.+.||..|-.++..
T Consensus 119 f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik--~~~~v~v~lt~~NR~~i~~~Il~ 173 (179)
T COG1618 119 FREAVEEVLKSGKPLIATLHRRSRHPLVQRIK--KLGGVYVFLTPENRNRILNEILS 173 (179)
T ss_pred HHHHHHHHhcCCCcEEEEEecccCChHHHHhh--hcCCEEEEEccchhhHHHHHHHH
Confidence 367888999999998888887633 3333 34667788999999988877754
No 68
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.97 E-value=0.0043 Score=53.94 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.5
Q ss_pred EEEeCCCCCChHHHHHHHHhccC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
|+|+||+||||||++..|++..+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999998753
No 69
>PRK14530 adenylate kinase; Provisional
Probab=96.96 E-value=0.002 Score=59.03 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=21.9
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+-|+|+||+||||||++..|++..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998753
No 70
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.91 E-value=0.0023 Score=57.02 Aligned_cols=23 Identities=35% Similarity=0.699 Sum_probs=21.0
Q ss_pred EEEeCCCCCChHHHHHHHHhccC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
|+|+||+||||||++..|++..+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998754
No 71
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.90 E-value=0.0018 Score=59.07 Aligned_cols=23 Identities=35% Similarity=0.719 Sum_probs=20.8
Q ss_pred EEEeCCCCCChHHHHHHHHhccC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
|+|+||+||||+|++..|++..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998754
No 72
>KOG3938|consensus
Probab=96.87 E-value=0.00071 Score=63.06 Aligned_cols=59 Identities=34% Similarity=0.476 Sum_probs=53.2
Q ss_pred CcEEEEeC-CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC
Q psy16959 1 GATIRNEG-DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59 (366)
Q Consensus 1 G~~i~~~~-~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~ 59 (366)
|+||..++ +.-||.++.+||.-++--.+++||.|-.|||.++.++.|.+++.+||....
T Consensus 140 GlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~r 199 (334)
T KOG3938|consen 140 GLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPR 199 (334)
T ss_pred ceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhccc
Confidence 67888776 566999999999999988899999999999999999999999999998743
No 73
>PRK14527 adenylate kinase; Provisional
Probab=96.87 E-value=0.0021 Score=57.71 Aligned_cols=27 Identities=22% Similarity=0.655 Sum_probs=23.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.+.+|+++||+||||||++..|++..+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999998753
No 74
>PRK14529 adenylate kinase; Provisional
Probab=96.79 E-value=0.0063 Score=56.42 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=21.0
Q ss_pred EEEeCCCCCChHHHHHHHHhccC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
|+|+||+||||+|++.+|++..+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78899999999999999998754
No 75
>KOG3552|consensus
Probab=96.78 E-value=0.0018 Score=69.21 Aligned_cols=56 Identities=30% Similarity=0.405 Sum_probs=51.4
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEee
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMG 65 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~~ 65 (366)
+..|+|..|.+|||++ |+|++||+|+.|||.++...+.+.|+.+++.+..++.++.
T Consensus 74 grPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV 129 (1298)
T KOG3552|consen 74 GRPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTV 129 (1298)
T ss_pred CCceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEE
Confidence 3678999999999987 4799999999999999999999999999999999998874
No 76
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.77 E-value=0.00081 Score=55.26 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=21.1
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+|+|.||+||||||+++.|++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999875
No 77
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.75 E-value=0.0013 Score=58.41 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=21.0
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+|+|.|+.||||||+++.|++..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999764
No 78
>PRK14532 adenylate kinase; Provisional
Probab=96.73 E-value=0.0045 Score=55.19 Aligned_cols=23 Identities=35% Similarity=0.800 Sum_probs=21.0
Q ss_pred EEEeCCCCCChHHHHHHHHhccC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
|+|+||+||||||++.+|++..+
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998764
No 79
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.71 E-value=0.0013 Score=60.18 Aligned_cols=53 Identities=15% Similarity=0.307 Sum_probs=35.7
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccCCccee---------eeccCCCCCCCCCCCcceeecCH
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAA---------IPHTSRPMKDGEVDGQDYHFITR 157 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~---------~~~tTr~pr~~E~~g~~y~~vs~ 157 (366)
++++|+||||+|||.++-.|++..+.-.++ +..+|.+|.+.|..++...+++.
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~ 63 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDD 63 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES--
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeecc
Confidence 468999999999999999999865432222 34569999999999999888764
No 80
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.64 E-value=0.0087 Score=54.41 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=36.0
Q ss_pred HHHHHHcCCeEEEcccchhhhccc-cCCCCcEEEEEeCCCHHHHHHHHHhcCCCCCc
Q psy16959 304 IRTVVNAGKICVLNLHPQSLKILR-SSDLKPFVIFVAPPPFELLKQKRIRRGDNFKT 359 (366)
Q Consensus 304 i~~vir~~k~~~l~~~p~~~~~l~-~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~~~ 359 (366)
+++.++.|..+++++....-..+. ...-..+++++..++.+.+++|+..|+..-..
T Consensus 90 a~~~l~~G~sVIvEgv~l~p~~~~~~~~~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~ 146 (197)
T PRK12339 90 IRRALLNGEDLVIESLYFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADRINYTHK 146 (197)
T ss_pred HHHHHHcCCCEEEEecCcCHHHHHHHHhcCeEEEEEEeCCHHHHHHHHHHHhhcccC
Confidence 566888999998886542222221 11112456667667899999999999864433
No 81
>KOG3079|consensus
Probab=96.60 E-value=0.032 Score=49.91 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=25.4
Q ss_pred CCCCCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 100 RSNEKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 100 ~~~~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.+.++.+|.++|++||||.|+..++++..+
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ 33 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYG 33 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHcC
Confidence 345667888999999999999999998754
No 82
>PRK07261 topology modulation protein; Provisional
Probab=96.59 E-value=0.0063 Score=53.86 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEEeCCCCCChHHHHHHHHhcc
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
|+|+|++|||||||+..|++..
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998653
No 83
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.55 E-value=0.015 Score=45.91 Aligned_cols=62 Identities=26% Similarity=0.436 Sum_probs=42.7
Q ss_pred CcEEEEeCCeEEEEEEcCC--------chhcccC-CCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKG--------GLADRTG-LLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~g--------s~A~~~G-~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+.+...+++.-|++|.+| ||..+.| .+++||.|++|||+.+... .....+|.+..+..+++
T Consensus 4 GAd~~~~~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~L 74 (88)
T PF14685_consen 4 GADFSYDNGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLL 74 (88)
T ss_dssp SEEEEEETTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEE
T ss_pred ceEEEEcCCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEE
Confidence 6677777899999999987 5555555 4679999999999999765 44677888877766655
No 84
>KOG3542|consensus
Probab=96.53 E-value=0.0016 Score=67.54 Aligned_cols=50 Identities=38% Similarity=0.531 Sum_probs=47.1
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT 58 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~ 58 (366)
+-||||..|.||+.|.+.| |+.||+|++|||++..+++...|..+|++..
T Consensus 561 GfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnnt 610 (1283)
T KOG3542|consen 561 GFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNNT 610 (1283)
T ss_pred cceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCCc
Confidence 4589999999999999999 9999999999999999999999999998754
No 85
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.53 E-value=0.011 Score=52.38 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=22.4
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++.|+|+||+|+||||++..|++..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 4579999999999999999999864
No 86
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.47 E-value=0.0049 Score=56.40 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=21.1
Q ss_pred EEEeCCCCCChHHHHHHHHhccC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
|+|+||+||||||++..|++..+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 87
>PRK06761 hypothetical protein; Provisional
Probab=96.46 E-value=0.0051 Score=59.00 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=44.1
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccC--CCCCCCCCCCcceeecCHHHHHHHHHhcce
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTS--RPMKDGEVDGQDYHFITRAQFELDILARKF 169 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tT--r~pr~~E~~g~~y~~vs~~ef~~~~~~g~f 169 (366)
.++|+|.||+||||||+++.|++.....+..+...+ ..+.+.+..+..+ ++.+++...+.....
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~--~~~eer~~~l~~~~~ 68 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVAC--FTKEEFDRLLSNYPD 68 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccC--CCHHHHHHHHHhhhH
Confidence 468999999999999999999987544344444332 2235556665433 588888888766553
No 88
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.42 E-value=0.017 Score=51.22 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=33.3
Q ss_pred CChHHHHHHHH---cCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959 299 TSLDAIRTVVN---AGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGDNF 357 (366)
Q Consensus 299 i~~~~i~~vir---~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~ 357 (366)
++.+.++..+. ....++++.+-... + + .+-+++++-.+.+.|++|+..||-+.
T Consensus 52 vD~d~~~~~le~~~~~~~~Ivd~H~~hl--~---~-~~dlVvVLR~~p~~L~~RLk~RGy~~ 107 (180)
T COG1936 52 VDVDKLRKRLEELLREGSGIVDSHLSHL--L---P-DCDLVVVLRADPEVLYERLKGRGYSE 107 (180)
T ss_pred eeHHHHHHHHHHHhccCCeEeechhhhc--C---C-CCCEEEEEcCCHHHHHHHHHHcCCCH
Confidence 56666666665 34556676655322 1 1 23444444488999999999999653
No 89
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=96.35 E-value=0.0076 Score=61.14 Aligned_cols=53 Identities=26% Similarity=0.348 Sum_probs=41.8
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
.+++|..|.++|||+++| |+.||+|++|||..+.+. .+....+... ...+.+.
T Consensus 257 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~--~~~~~~l~~~~~g~~v~l~ 311 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSF--ADLRRAIGTLKPGKKVTLG 311 (428)
T ss_pred CceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEE
Confidence 689999999999999999 999999999999999754 5555555432 3344443
No 90
>PRK13808 adenylate kinase; Provisional
Probab=96.32 E-value=0.0073 Score=59.20 Aligned_cols=23 Identities=35% Similarity=0.775 Sum_probs=21.0
Q ss_pred EEEeCCCCCChHHHHHHHHhccC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
|+|+||+||||+|++.+|++.++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~yg 25 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYG 25 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78899999999999999998764
No 91
>PRK02496 adk adenylate kinase; Provisional
Probab=96.31 E-value=0.0096 Score=52.94 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEeCCCCCChHHHHHHHHhcc
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++|+||+||||||++..|++..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999999865
No 92
>PRK08118 topology modulation protein; Reviewed
Probab=96.30 E-value=0.0063 Score=53.71 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.9
Q ss_pred EEEeCCCCCChHHHHHHHHhccC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
|+|+||+|||||||++.|++..+
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998753
No 93
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.26 E-value=0.01 Score=55.25 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=21.2
Q ss_pred EEEeCCCCCChHHHHHHHHhccC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
|+|+||+||||+|++..|++..+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998754
No 94
>KOG3129|consensus
Probab=96.16 E-value=0.011 Score=53.45 Aligned_cols=51 Identities=27% Similarity=0.377 Sum_probs=39.5
Q ss_pred eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCC-HHHHHHHHHcCCCcE
Q psy16959 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS-IHIVCDILVGLTGQE 61 (366)
Q Consensus 10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~-~~~a~~~Lk~~~~~v 61 (366)
.++|..|.++|||+.+| |+.||.|+.+.++.-.+.. ..++....+...+..
T Consensus 140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~ 191 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQI 191 (231)
T ss_pred eEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcc
Confidence 57999999999999999 9999999998776666554 555555555555444
No 95
>PLN02674 adenylate kinase
Probab=96.09 E-value=0.011 Score=55.65 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
..|+|+||+||||+|++.+|++..+
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3478999999999999999998764
No 96
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.06 E-value=0.07 Score=48.11 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=20.4
Q ss_pred CcEEEeCCCCCChHHHHHHHHh
Q psy16959 105 RPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
..|.|+|+.||||||++..|.+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~ 24 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE 24 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 97
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.06 E-value=0.0032 Score=53.14 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=34.3
Q ss_pred hHHHHHHHHcCCeEEEcccchhh---hcc----ccCCCCcEEEEEeCCCHHHHHHHHHhcCCCC
Q psy16959 301 LDAIRTVVNAGKICVLNLHPQSL---KIL----RSSDLKPFVIFVAPPPFELLKQKRIRRGDNF 357 (366)
Q Consensus 301 ~~~i~~vir~~k~~~l~~~p~~~---~~l----~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~ 357 (366)
.+.++..++.|..++++.+-... ..+ +..++...+|++. .+.+.+.+|+..|..+-
T Consensus 60 ~~~~~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~-~~~~~~~~R~~~R~~~~ 122 (143)
T PF13671_consen 60 NAAIRKALRNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLD-APEETLRERLAQRNREG 122 (143)
T ss_dssp HHHHHHHHHTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEEC-HHHHHHHHHHHTTHCCC
T ss_pred HHHHHHHHHcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEE-CCHHHHHHHHHhcCCcc
Confidence 34567778888888887554221 122 1233344555555 67899999999998764
No 98
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.06 E-value=0.0038 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=20.4
Q ss_pred EEEeCCCCCChHHHHHHHHhcc
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
|+|.|++|||||||++.|.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999875
No 99
>PRK10139 serine endoprotease; Provisional
Probab=96.05 E-value=0.013 Score=60.09 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=44.0
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++| |++||.|++|||..+.+ .++....++...+.+.+.
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~v~l~ 442 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQ 442 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEE
Confidence 478999999999999999 99999999999999965 477788887655544443
No 100
>PRK13948 shikimate kinase; Provisional
Probab=96.05 E-value=0.017 Score=51.91 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=23.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.++.|+|+|..||||||+.+.|++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999875
No 101
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.98 E-value=0.0063 Score=53.55 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=21.9
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.++|+|+||||||||.+.|...
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 489999999999999999999865
No 102
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.0061 Score=54.53 Aligned_cols=22 Identities=32% Similarity=0.792 Sum_probs=20.5
Q ss_pred EEEeCCCCCChHHHHHHHHhcc
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
|+|+||+||||+|++++|++..
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999883
No 103
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=95.94 E-value=0.015 Score=58.93 Aligned_cols=53 Identities=30% Similarity=0.471 Sum_probs=43.9
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
.+++|..|.++|||+++| |++||.|++|||..+.+ .++...+++.. .+.+.+.
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~ 416 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALL 416 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEE
Confidence 589999999999999999 99999999999999964 57788888754 3444443
No 104
>PRK00625 shikimate kinase; Provisional
Probab=95.93 E-value=0.028 Score=50.01 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=21.0
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.|+|+|.+||||||+++.|++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999875
No 105
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.93 E-value=0.013 Score=52.01 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=37.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCC--CCcceeecCHHHHHHHHH
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEV--DGQDYHFITRAQFELDIL 165 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~--~g~~y~~vs~~ef~~~~~ 165 (366)
..-.+.|+||||+|||+|.+.++.... |..|++ .|.++...+.+++.+.++
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lis------------p~~G~l~f~Ge~vs~~~pea~Rq~Vs 80 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLIS------------PTSGTLLFEGEDVSTLKPEAYRQQVS 80 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccC------------CCCceEEEcCccccccChHHHHHHHH
Confidence 445789999999999999999987521 333432 677777788888877654
No 106
>PRK10942 serine endoprotease; Provisional
Probab=95.90 E-value=0.019 Score=59.07 Aligned_cols=53 Identities=26% Similarity=0.305 Sum_probs=44.8
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|+|+++| |++||.|++|||..+.+ .++...+++.....+.+.
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s--~~dl~~~l~~~~~~v~l~ 460 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKN--IAELRKILDSKPSVLALN 460 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEE
Confidence 479999999999999999 99999999999999976 578888887755554443
No 107
>PRK13946 shikimate kinase; Provisional
Probab=95.88 E-value=0.023 Score=50.77 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.7
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.++.|+|+|.+|||||+++..|++..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999999875
No 108
>KOG3605|consensus
Probab=95.86 E-value=0.0043 Score=64.30 Aligned_cols=52 Identities=27% Similarity=0.533 Sum_probs=48.4
Q ss_pred EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
+|=.++.||.|+|.| +++|.+|++|||++|...+|+.++++|-.+.|.++.+
T Consensus 759 iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMK 810 (829)
T KOG3605|consen 759 IICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMK 810 (829)
T ss_pred EeehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhh
Confidence 566788999999998 9999999999999999999999999999999988776
No 109
>PRK14526 adenylate kinase; Provisional
Probab=95.81 E-value=0.023 Score=52.25 Aligned_cols=22 Identities=27% Similarity=0.676 Sum_probs=20.0
Q ss_pred EEEeCCCCCChHHHHHHHHhcc
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++|+||+||||+|++..|++..
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999764
No 110
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=95.80 E-value=0.017 Score=58.55 Aligned_cols=47 Identities=28% Similarity=0.403 Sum_probs=40.9
Q ss_pred eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC
Q psy16959 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59 (366)
Q Consensus 10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~ 59 (366)
++.|..|.++|||+++| |++||+|++|||..+.+ .++....++...+
T Consensus 204 g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~ 250 (420)
T TIGR00054 204 EPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRS--WTDFVSAVKENPG 250 (420)
T ss_pred CcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHHhCCC
Confidence 57899999999999999 99999999999999965 5788888876544
No 111
>PRK10898 serine endoprotease; Provisional
Probab=95.74 E-value=0.02 Score=56.66 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=37.5
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHH
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILV 55 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk 55 (366)
.|++|..|.++|||+++| |+.||+|++|||..+.+. ++....+.
T Consensus 279 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~~l~~~l~ 322 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISA--LETMDQVA 322 (353)
T ss_pred CeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHH
Confidence 689999999999999999 999999999999999654 44444554
No 112
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=95.70 E-value=0.02 Score=56.63 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=42.1
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc--CCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG--LTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~--~~~~v~l~ 64 (366)
.|++|..|.++|||+++| |++||+|++|||..+.+. ++....+.. ..+++.+.
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~dl~~~l~~~~~g~~v~l~ 332 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGA--EELMDRIAETRPGSKVMVT 332 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEE
Confidence 589999999999999999 999999999999999654 566666654 23444443
No 113
>PLN02924 thymidylate kinase
Probab=95.67 E-value=0.034 Score=51.43 Aligned_cols=40 Identities=20% Similarity=0.107 Sum_probs=28.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK 143 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr 143 (366)
++..|+|-|.-||||||++..|++....-+..+ ..|+.|.
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~ep~ 54 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRFPD 54 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeCCC
Confidence 456799999999999999999998654333333 3445443
No 114
>PRK10139 serine endoprotease; Provisional
Probab=95.66 E-value=0.022 Score=58.40 Aligned_cols=46 Identities=17% Similarity=0.269 Sum_probs=40.0
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~ 56 (366)
..|++|..|.++|||+++| |++||+|++|||..+.+. +++...+..
T Consensus 289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~--~dl~~~l~~ 334 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSF--AELRSRIAT 334 (455)
T ss_pred CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHh
Confidence 3589999999999999999 999999999999999754 677776654
No 115
>PLN02459 probable adenylate kinase
Probab=95.64 E-value=0.021 Score=54.11 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.7
Q ss_pred EEEeCCCCCChHHHHHHHHhccC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
++|+||+||||+|++..|++..+
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~ 54 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLG 54 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 77899999999999999998754
No 116
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.64 E-value=0.011 Score=44.29 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.6
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+|+|+|++|||||++++.|.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 117
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=95.64 E-value=0.19 Score=45.53 Aligned_cols=22 Identities=23% Similarity=0.069 Sum_probs=19.2
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+|.|+|+.||||||++..|.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~ 22 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL 22 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC
Confidence 4789999999999999988754
No 118
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=95.64 E-value=0.027 Score=57.56 Aligned_cols=47 Identities=19% Similarity=0.421 Sum_probs=39.7
Q ss_pred eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC
Q psy16959 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59 (366)
Q Consensus 10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~ 59 (366)
++.|..|.++|||+++| |++||+|++|||..+. +.++....++...+
T Consensus 222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~ 268 (449)
T PRK10779 222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLT--QWQTFVTLVRDNPG 268 (449)
T ss_pred CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcC--CHHHHHHHHHhCCC
Confidence 37899999999999999 9999999999999996 45677777766443
No 119
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.62 E-value=0.0056 Score=49.99 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=25.7
Q ss_pred EEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p 142 (366)
|+|+|++|+|||||...|......-....+.+|+.+
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~ 37 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDP 37 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSE
T ss_pred EEEECCCCCCHHHHHHHHhccccccccccccceeee
Confidence 689999999999999999964211233345666665
No 120
>PRK08233 hypothetical protein; Provisional
Probab=95.62 E-value=0.0098 Score=52.30 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.+|.|.|++||||||++..|++...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5788999999999999999998643
No 121
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.62 E-value=0.011 Score=48.20 Aligned_cols=25 Identities=28% Similarity=0.628 Sum_probs=21.9
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+..++|+||+|+|||+++..|+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3568999999999999999999763
No 122
>PRK10942 serine endoprotease; Provisional
Probab=95.61 E-value=0.024 Score=58.41 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=39.0
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~ 56 (366)
.|++|..|.++|||+++| |+.||+|++|||..+.+. ++....+..
T Consensus 311 ~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~--~dl~~~l~~ 355 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGT 355 (473)
T ss_pred CceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHh
Confidence 589999999999999999 999999999999999765 566666644
No 123
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.53 E-value=0.013 Score=50.18 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.4
Q ss_pred cEEEeCCCCCChHHHHHHHHhccC
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+++|+|++||||||+++.|.+.++
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC
Confidence 478999999999999999998753
No 124
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=95.45 E-value=0.029 Score=53.17 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=39.5
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL 57 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~ 57 (366)
.|+.|..+.++|+|++.| |+.||+|++|||.++.+. +++..++...
T Consensus 191 ~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~--~~~~~~l~~~ 236 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP--EQAFQALQML 236 (259)
T ss_pred eEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhc
Confidence 589999999999999999 999999999999999754 5566666553
No 125
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.45 E-value=0.012 Score=53.62 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=23.6
Q ss_pred CCCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 101 SNEKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+..+.+|.|+||+|||||||++.|....
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455788999999999999999998753
No 126
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.43 E-value=0.066 Score=46.42 Aligned_cols=57 Identities=14% Similarity=0.239 Sum_probs=32.9
Q ss_pred HHHHHHcCCeEEEcccc-h--hhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCCCCCchh
Q psy16959 304 IRTVVNAGKICVLNLHP-Q--SLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGDNFKTGT 361 (366)
Q Consensus 304 i~~vir~~k~~~l~~~p-~--~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~~~~~~ 361 (366)
.......+++.++...- + =.++|+...-. +.+.-+.-+++.+-+|...|..+|-..+
T Consensus 60 ~~~~~~~~~~~vi~CSALKr~YRD~LR~~~~~-~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ 119 (161)
T COG3265 60 AASLAQKNKHVVIACSALKRSYRDLLREANPG-LRFVYLDGDFDLILERMKARKGHFMPAS 119 (161)
T ss_pred HHHhhcCCCceEEecHHHHHHHHHHHhccCCC-eEEEEecCCHHHHHHHHHhcccCCCCHH
Confidence 33344456765555443 1 12445533112 3333344789999999999999996543
No 127
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.42 E-value=0.013 Score=50.95 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.7
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+..|+|+|++|||||+++..|++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999875
No 128
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=95.41 E-value=0.0075 Score=61.51 Aligned_cols=39 Identities=41% Similarity=0.682 Sum_probs=36.3
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCE
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGI 40 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~ 40 (366)
|+.+..++++..|..|.+||||..+| |.+||.|+.|||.
T Consensus 454 Gl~v~~~~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 454 GLKVKSEGGHEKITFVFPGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred ceEecccCCeeEEEecCCCChhHhcc-CCCccEEEEEcCc
Confidence 56677788899999999999999999 9999999999998
No 129
>PRK06217 hypothetical protein; Validated
Probab=95.33 E-value=0.016 Score=51.69 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.2
Q ss_pred EEEeCCCCCChHHHHHHHHhccC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
|+|+|++||||||++.+|++..+
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999998754
No 130
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.32 E-value=0.0097 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=20.9
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|++++|+||+||||||.+.+|+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~ 24 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR 24 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH
Confidence 578999999999999998888753
No 131
>PRK06547 hypothetical protein; Provisional
Probab=95.29 E-value=0.017 Score=51.32 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+.+|.|.|++||||||++..|++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44567888999999999999999864
No 132
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.26 E-value=0.019 Score=54.30 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|||||||.+.|+.-
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 5678999999999999999999874
No 133
>PLN02199 shikimate kinase
Probab=95.18 E-value=0.042 Score=53.02 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=23.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
..+.|+|+|..|+|||++...|++..
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~L 126 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVL 126 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999864
No 134
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.16 E-value=0.015 Score=49.05 Aligned_cols=23 Identities=35% Similarity=0.762 Sum_probs=20.8
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+|+|+||+|+|||+|+..|++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999764
No 135
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.13 E-value=0.023 Score=46.81 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=20.8
Q ss_pred EEEeCCCCCChHHHHHHHHhccC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
|+|.||+|+|||+++..+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 68999999999999999998753
No 136
>PRK03839 putative kinase; Provisional
Probab=95.09 E-value=0.017 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=21.5
Q ss_pred cEEEeCCCCCChHHHHHHHHhccC
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.|+|+|++||||||++.+|++..+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998753
No 137
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.04 E-value=0.019 Score=52.15 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=22.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+.+|.|.|++|||||||+..|.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45578899999999999999998764
No 138
>KOG3354|consensus
Probab=95.01 E-value=0.11 Score=45.56 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.5
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+..|+++|++|+||||+.+.|.++.
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l 36 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEEL 36 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHh
Confidence 4579999999999999999999875
No 139
>PRK06696 uridine kinase; Validated
Probab=95.00 E-value=0.02 Score=52.83 Aligned_cols=27 Identities=15% Similarity=0.259 Sum_probs=23.1
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
..+.+|.|.|++|||||||+..|++..
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999999864
No 140
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=94.98 E-value=0.031 Score=57.12 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=34.8
Q ss_pred EEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHH
Q psy16959 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54 (366)
Q Consensus 11 i~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~L 54 (366)
.+|..|.++|||+++| |+.||+|++|||..+.+. ++....+
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~--~~l~~~v 168 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW--DAVRLAL 168 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHH
Confidence 3689999999999999 999999999999999876 4444444
No 141
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=94.96 E-value=0.3 Score=43.57 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.5
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.|.|+|..||||||++..|.+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~ 23 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY 23 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999999998763
No 142
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.94 E-value=0.025 Score=41.72 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=18.7
Q ss_pred CcEEEeCCCCCChHHHHHHHH
Q psy16959 105 RPIVLIGPPNIGRHELRQRLM 125 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~ 125 (366)
...+|+||+|||||||+..+.
T Consensus 24 ~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999998875
No 143
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.90 E-value=0.025 Score=46.57 Aligned_cols=26 Identities=23% Similarity=0.603 Sum_probs=22.7
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
..+.++|+||+|+|||+++..+++..
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998763
No 144
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.90 E-value=0.022 Score=48.04 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=21.0
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+|+|+|++||||||++..|++..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999874
No 145
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.023 Score=55.01 Aligned_cols=35 Identities=31% Similarity=0.322 Sum_probs=27.0
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccCCcceeeeccC
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTS 139 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tT 139 (366)
.=|+|+||||||||-|++.|++..+.-.-..++||
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATt 132 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATT 132 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccc
Confidence 35899999999999999999987654333455554
No 146
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.89 E-value=0.015 Score=52.32 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.0
Q ss_pred cEEEeCCCCCChHHHHHHHHhccC
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+|-|.||+||||||++.+|....+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999987644
No 147
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.84 E-value=0.065 Score=51.17 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=36.4
Q ss_pred hHHHHHHHHcCCeEEEcccc--hhh-hcc----ccCCCCcEEEEEeCCCHHHHHHHHHhcCCC--CCchhhhhh
Q psy16959 301 LDAIRTVVNAGKICVLNLHP--QSL-KIL----RSSDLKPFVIFVAPPPFELLKQKRIRRGDN--FKTGTAQAQ 365 (366)
Q Consensus 301 ~~~i~~vir~~k~~~l~~~p--~~~-~~l----~~~~~~p~vi~~~~~~~~~l~~~~~~r~~~--~~~~~~~~~ 365 (366)
.+++++.+.+..++++|..- .+. ..+ +.....-.+|++. .+.+...++-..|+.. ...++..++
T Consensus 61 ~s~v~r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~-~~~e~~~~~N~~R~~~~~~~~e~i~~m 133 (270)
T PF08433_consen 61 KSAVERALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCD-CPLETCLQRNSKRPEPERYPEETIDDM 133 (270)
T ss_dssp HHHHHHHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHTT-S--S-HHHHHHH
T ss_pred HHHHHHhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEEC-CCHHHHHHhhhccCCCCCCCHHHHHHH
Confidence 55677777777888888766 343 111 1234444667777 6688888888888887 777776654
No 148
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.80 E-value=0.024 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+..|+|.|++||||||++..|++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~ 30 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER 30 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999875
No 149
>PHA00729 NTP-binding motif containing protein
Probab=94.79 E-value=0.032 Score=51.75 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=36.7
Q ss_pred cEEEeCCCCCChHHHHHHHHhccC-Cc-ceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHh
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSD-RF-AAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILA 166 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~-~~-~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~ 166 (366)
-|+|+|++|+|||+|+..|++... .+ ....+ ......+....|++.+++...+..
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~------~~~~d~~~~~~fid~~~Ll~~L~~ 75 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTK------DDAWQYVQNSYFFELPDALEKIQD 75 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcccccch------hhHHhcCCcEEEEEHHHHHHHHHH
Confidence 488999999999999999987632 11 11111 111234567788898888777653
No 150
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.78 E-value=0.021 Score=56.46 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.+++++|+||+|+|||||+..|++...
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999987544
No 151
>PTZ00301 uridine kinase; Provisional
Probab=94.76 E-value=0.021 Score=52.48 Aligned_cols=23 Identities=17% Similarity=0.383 Sum_probs=19.7
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+|.|.||||||||||+..|.+.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHH
Confidence 35679999999999999988754
No 152
>PF05729 NACHT: NACHT domain
Probab=94.73 E-value=0.023 Score=48.54 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.8
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|.|++|+|||+++..++..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHH
Confidence 68999999999999999998854
No 153
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.65 E-value=0.027 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
..-+++|+||||||||||...|..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 567899999999999999998864
No 154
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.64 E-value=0.032 Score=47.58 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.8
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.|+|+|++|+|||++++.|++..
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999765
No 155
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.64 E-value=0.14 Score=53.47 Aligned_cols=26 Identities=12% Similarity=0.393 Sum_probs=23.0
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..+.+|+++|++||||||++.+++..
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~ 392 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQP 392 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998875
No 156
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.60 E-value=0.028 Score=50.54 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.3
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+|.|+||+||||||++..|....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998753
No 157
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=94.53 E-value=0.63 Score=42.22 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=19.5
Q ss_pred cEEEeCCCCCChHHHHHHHHh
Q psy16959 106 PIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~ 126 (366)
+|.|+|+.||||||+++.|++
T Consensus 3 ~igitG~igsGKst~~~~l~~ 23 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSS 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 158
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.53 E-value=0.033 Score=45.18 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.0
Q ss_pred EEEeCCCCCChHHHHHHHHhcc
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
|+++|++|||||+|..+|+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999999763
No 159
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.51 E-value=0.024 Score=46.93 Aligned_cols=25 Identities=36% Similarity=0.703 Sum_probs=18.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..+.++|.||+|+|||+++.++++.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999875
No 160
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.51 E-value=0.031 Score=45.85 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHH
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLM 125 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~ 125 (366)
....++|+||||+|||||+..+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34679999999999999999976
No 161
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=94.48 E-value=0.036 Score=47.32 Aligned_cols=37 Identities=30% Similarity=0.538 Sum_probs=25.8
Q ss_pred cEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p 142 (366)
-|+|+|++|+|||+|+.+|...........+.+|+..
T Consensus 4 ~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~ 40 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDS 40 (174)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCc
Confidence 4789999999999999999875322222334455444
No 162
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.47 E-value=0.032 Score=51.79 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=21.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
..-.+.|+||||||||||...|.-
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999863
No 163
>COG1162 Predicted GTPases [General function prediction only]
Probab=94.45 E-value=0.026 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
.+++.+|+|+||||||||..+|.-
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCc
Confidence 457899999999999999999974
No 164
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.43 E-value=0.18 Score=50.45 Aligned_cols=34 Identities=21% Similarity=0.467 Sum_probs=24.9
Q ss_pred cEEEeCCCCCChHHHHHHHHhccCCcceeeeccC
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTS 139 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tT 139 (366)
-.||.||+|+|||||+..|+...+.-...++.+|
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 4689999999999999999986443333344443
No 165
>PRK13975 thymidylate kinase; Provisional
Probab=94.38 E-value=0.042 Score=49.06 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=23.3
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+..|+|.|+.||||||+++.|++...
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998754
No 166
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=94.35 E-value=0.028 Score=56.76 Aligned_cols=40 Identities=25% Similarity=0.427 Sum_probs=33.8
Q ss_pred EEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHH
Q psy16959 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILV 55 (366)
Q Consensus 13 I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk 55 (366)
|..|.++|+|+++| |++||+|++|||..+... .+....+.
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw--~D~~~~l~ 41 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDL--IDYQFLCA 41 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHhc
Confidence 67899999999999 999999999999999655 55555553
No 167
>PF13173 AAA_14: AAA domain
Probab=94.34 E-value=0.039 Score=46.16 Aligned_cols=24 Identities=33% Similarity=0.736 Sum_probs=21.8
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.++++|.||.+||||+++.++++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~ 25 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKD 25 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999999876
No 168
>PRK13947 shikimate kinase; Provisional
Probab=94.17 E-value=0.038 Score=48.20 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.6
Q ss_pred cEEEeCCCCCChHHHHHHHHhccC
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
-|+|+|++|||||+++..|++..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998753
No 169
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.12 E-value=0.061 Score=49.58 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.5
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.+|-|.|+|||||||++++|.+...
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4566999999999999999998754
No 170
>PRK04040 adenylate kinase; Provisional
Probab=94.10 E-value=0.044 Score=49.35 Aligned_cols=25 Identities=20% Similarity=0.515 Sum_probs=22.4
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++.|+|+|++||||||++..|++..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999874
No 171
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.08 E-value=0.041 Score=48.85 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.6
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.++|+||||+|||.+++.|++..
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l 27 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELL 27 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999864
No 172
>PRK15453 phosphoribulokinase; Provisional
Probab=94.02 E-value=0.069 Score=51.24 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=21.2
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+.+|.|+|.|||||||++..|++..
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999998643
No 173
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.97 E-value=0.068 Score=45.54 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
...+|+|.|+.|+|||++++.+++..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999864
No 174
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.91 E-value=0.045 Score=50.56 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.5
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+|-|.||+||||||+++.|...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 4679999999999999999865
No 175
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.88 E-value=0.047 Score=53.63 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=22.0
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
...-.++|+|||||||||+...++-
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999999984
No 176
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.88 E-value=0.053 Score=47.71 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.+|+|+|++||||||++..|+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999875
No 177
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.84 E-value=0.11 Score=50.60 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=24.3
Q ss_pred CCCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 101 SNEKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+..+..|+|+|++|||||+++..|++..
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999999999875
No 178
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=93.84 E-value=0.082 Score=53.63 Aligned_cols=52 Identities=29% Similarity=0.452 Sum_probs=40.4
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEE
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMT 63 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l 63 (366)
.+.+|..|.++|||+++| |++||.|++|||..+.+. .+....+....+++.+
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~--~dl~~~ia~~~~~v~~ 179 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGF--KDVRQQIADIAGEPMV 179 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhcccceE
Confidence 467899999999999999 999999999999998765 4555444433355443
No 179
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.84 E-value=0.042 Score=44.61 Aligned_cols=21 Identities=43% Similarity=0.844 Sum_probs=19.1
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|.|.||+|+|||+++..|++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999875
No 180
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.82 E-value=0.048 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.4
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..|+++|++|+||||+.+.|...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999865
No 181
>KOG0745|consensus
Probab=93.82 E-value=0.055 Score=54.42 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=27.7
Q ss_pred cEEEeCCCCCChHHHHHHHHhccCCcceeeeccC
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTS 139 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tT 139 (366)
=|+|+||||||||-|++.|++-.+.-...+++||
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTt 261 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTT 261 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccc
Confidence 4899999999999999999986655455567775
No 182
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.79 E-value=0.044 Score=47.97 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=17.7
Q ss_pred CCCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 101 SNEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.++|.|++|+|||+|..++.+.
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345688999999999999999988754
No 183
>PRK14528 adenylate kinase; Provisional
Probab=93.77 E-value=0.058 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.2
Q ss_pred cEEEeCCCCCChHHHHHHHHhccC
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
-|+|+||+||||+|+++.|++..+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998753
No 184
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.74 E-value=0.092 Score=49.60 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=20.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
..-.++|+|||||||||+.+.+-+
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhc
Confidence 456789999999999999988765
No 185
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.69 E-value=0.056 Score=49.98 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=22.1
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..+.++.|.||+|||||||++.|+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34557789999999999999999875
No 186
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.68 E-value=0.054 Score=51.95 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=21.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+++++|+||+||||||++..|+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999864
No 187
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.66 E-value=0.056 Score=48.77 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=29.3
Q ss_pred HcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCC
Q psy16959 309 NAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD 355 (366)
Q Consensus 309 r~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~ 355 (366)
....+++++|.-. .......+..-..||+. .+.+...+|+.+|..
T Consensus 109 ~~~~iViVEG~~l-~~~~~l~~l~D~~Ifvd-~~~d~~~~Rr~~R~~ 153 (187)
T cd02024 109 EDLHILIVDGFLL-YNYKPLVDLFDIRYFLR-VPYETCKRRREARTG 153 (187)
T ss_pred CCCcEEEEechHh-cCCHHHHhhcCceeEec-CCHHHHHHHHHHcCC
Confidence 3445777777742 21112225678899998 568888889988853
No 188
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.63 E-value=0.053 Score=49.09 Aligned_cols=22 Identities=14% Similarity=0.404 Sum_probs=19.6
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+|+|+||+||||||++..|...
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
No 189
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.62 E-value=0.075 Score=46.46 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
..++|+|++|+|||++++.|++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998753
No 190
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=93.62 E-value=0.057 Score=51.23 Aligned_cols=36 Identities=22% Similarity=0.458 Sum_probs=27.3
Q ss_pred EEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p 142 (366)
|+|+|+++||||||++.|...........+.|||.+
T Consensus 3 V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~ 38 (270)
T TIGR00436 3 VAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR 38 (270)
T ss_pred EEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc
Confidence 789999999999999999975322234456788765
No 191
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.62 E-value=0.057 Score=48.11 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.3
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+|.|.|++|||||||+..|++..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998763
No 192
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.60 E-value=0.12 Score=48.46 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=21.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
..-.|.|+||||+|||||.+.++-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999985
No 193
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=93.59 E-value=0.053 Score=48.64 Aligned_cols=24 Identities=25% Similarity=0.628 Sum_probs=19.5
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+-|+|+||+|||||+|..+|...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHS
T ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Confidence 356899999999999999999876
No 194
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.58 E-value=0.06 Score=47.91 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=21.9
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
..+++|+||+|+||||++..|+...
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998763
No 195
>PRK06620 hypothetical protein; Validated
Probab=93.54 E-value=0.065 Score=49.29 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
++++|.||+|+|||+|++.+++.++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 6799999999999999998877654
No 196
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.54 E-value=0.055 Score=48.20 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=21.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.++++.|+|++|||||||+.+|+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3457789999999999999999865
No 197
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.53 E-value=0.04 Score=47.29 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=19.0
Q ss_pred EeCCCCCChHHHHHHHHhccC
Q psy16959 109 LIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 109 L~GpsgsGK~~L~~~L~~~~~ 129 (366)
|+||+||||+|++.+|+++.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 689999999999999998753
No 198
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=93.52 E-value=0.065 Score=46.21 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=19.9
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
=|+|+||+|+|||||++.|...
T Consensus 3 rimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999999865
No 199
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=93.51 E-value=0.06 Score=49.66 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.5
Q ss_pred CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
..|.|.||+||||||+++.|++..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999864
No 200
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=93.47 E-value=0.063 Score=46.57 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.9
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+|+|+|++|||||++++.|++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999864
No 201
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.47 E-value=0.084 Score=47.55 Aligned_cols=42 Identities=17% Similarity=0.405 Sum_probs=30.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh--ccCC---cceeeeccCCCCCC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME--DSDR---FAAAIPHTSRPMKD 144 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~--~~~~---~~~~~~~tTr~pr~ 144 (366)
...++.|+||||+|||||...++- .|.. .....++|..+|..
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~ 70 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE 70 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc
Confidence 567899999999999999999884 2421 22235677777743
No 202
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.46 E-value=0.067 Score=47.73 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.0
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHH
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLM 125 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~ 125 (366)
.....+.|+||+|+|||||.+.+.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 356789999999999999998875
No 203
>KOG1738|consensus
Probab=93.46 E-value=0.1 Score=54.30 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=54.4
Q ss_pred CcEEEE-eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRN-EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~-~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+.|+. .++-.+|+.+.++|||+....+..||.++.||+..+.+.++..++..|+...--+.+.
T Consensus 216 g~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~ 280 (638)
T KOG1738|consen 216 GLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELT 280 (638)
T ss_pred ceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceee
Confidence 455654 3556688999999999999999999999999999999999999999998876666655
No 204
>PRK12289 GTPase RsgA; Reviewed
Probab=93.46 E-value=0.065 Score=53.10 Aligned_cols=24 Identities=33% Similarity=0.692 Sum_probs=21.2
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.++++|+|+||||||||.+.|...
T Consensus 172 ~ki~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 172 NKITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred cceEEEEeCCCCCHHHHHHHHcCc
Confidence 357899999999999999999854
No 205
>PRK13949 shikimate kinase; Provisional
Probab=93.45 E-value=0.073 Score=47.02 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.8
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+-|+|+|++|+||||++..|++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998753
No 206
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.44 E-value=0.057 Score=54.01 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=21.4
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+++|+|+|||||||||-..+|+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHH
Confidence 3899999999999999977777643
No 207
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.42 E-value=0.065 Score=48.85 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.8
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..+++++|+||+|+|||+++..+.+.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999865
No 208
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.39 E-value=0.07 Score=48.16 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=23.4
Q ss_pred CCCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 101 SNEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+..+..|+|+|++|+|||||+..|...
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999875
No 209
>PRK04182 cytidylate kinase; Provisional
Probab=93.39 E-value=0.066 Score=46.80 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.1
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+|+|+|++||||||++..|++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999875
No 210
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.39 E-value=0.15 Score=47.72 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=39.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCC--CCCcceeecCHHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGE--VDGQDYHFITRAQFELDILARK 168 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E--~~g~~y~~vs~~ef~~~~~~g~ 168 (366)
...++.|+||||+|||+|.+.+.-.. +|..|| +.|.++.-++.++..+..+.-.
T Consensus 33 ~Gei~~iiGgSGsGKStlLr~I~Gll------------~P~~GeI~i~G~~i~~ls~~~~~~ir~r~G 88 (263)
T COG1127 33 RGEILAILGGSGSGKSTLLRLILGLL------------RPDKGEILIDGEDIPQLSEEELYEIRKRMG 88 (263)
T ss_pred CCcEEEEECCCCcCHHHHHHHHhccC------------CCCCCeEEEcCcchhccCHHHHHHHHhhee
Confidence 45789999999999999999887431 244444 4788888888877766665433
No 211
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.38 E-value=0.067 Score=47.06 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.4
Q ss_pred cEEEeCCCCCChHHHHHHHHhccC
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.|.|.||+||||||++..|++..+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 478999999999999999998753
No 212
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.37 E-value=0.069 Score=47.74 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....++|+||+||||||++..|+..
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4578999999999999999998865
No 213
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=93.34 E-value=0.29 Score=49.22 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=40.1
Q ss_pred EEeCCeEEEEEEc--------CCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCc
Q psy16959 5 RNEGDAVIVGRVV--------KGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60 (366)
Q Consensus 5 ~~~~~gi~I~~v~--------~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~ 60 (366)
+-..+||+|.... .+|||+.+| |+.||.|++|||..+.+. +++...++...+.
T Consensus 101 ~l~t~GVlVvg~~~v~~~~g~~~SPAa~AG-Lq~GDiIvsING~~V~s~--~DL~~iL~~~~g~ 161 (402)
T TIGR02860 101 KLNTKGVLVVGFSDIETEKGKIHSPGEEAG-IQIGDRILKINGEKIKNM--DDLANLINKAGGE 161 (402)
T ss_pred EEecCEEEEEEEEcccccCCCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCC
Confidence 3445778775432 258999999 999999999999999654 7777888766544
No 214
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.33 E-value=0.081 Score=49.09 Aligned_cols=25 Identities=20% Similarity=0.591 Sum_probs=21.7
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.-++|.||+|+|||||+.-++++.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred ceEEEECCCccchhHHHHHHHhccC
Confidence 3489999999999999999998754
No 215
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.32 E-value=0.059 Score=45.07 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||.+.|+..
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEccCCCccccceeeeccc
Confidence 4568999999999999999999864
No 216
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.30 E-value=0.072 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.4
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+++|+|++||||||++..|.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998753
No 217
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.30 E-value=0.046 Score=50.03 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.4
Q ss_pred CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++|+|+|++||||||+++.|++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 478999999999999999998753
No 218
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.30 E-value=0.071 Score=53.20 Aligned_cols=26 Identities=19% Similarity=0.459 Sum_probs=22.7
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..+.+++|+||+|+||||++.+|+..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999864
No 219
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=93.28 E-value=0.071 Score=46.31 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=21.5
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+-++|+||||+|||+++..|.++
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 456899999999999999999876
No 220
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=93.26 E-value=0.088 Score=49.29 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=21.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
.+...+|+||+|||||+|+..|.-
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ 47 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICF 47 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999999999863
No 221
>PLN02422 dephospho-CoA kinase
Probab=93.18 E-value=1.5 Score=40.92 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.8
Q ss_pred CcEEEeCCCCCChHHHHHHHHh
Q psy16959 105 RPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
+.|.|+|..|||||+++..|.+
T Consensus 2 ~~igltG~igsGKstv~~~l~~ 23 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS 23 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999985
No 222
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=93.14 E-value=0.12 Score=54.18 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+++++|+||+|+|||+|+..|++.
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHH
Confidence 4568899999999999999999874
No 223
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.12 E-value=0.088 Score=50.16 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=20.0
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+|.|+|+|||||||++..|.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l 23 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF 23 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999988653
No 224
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.11 E-value=0.071 Score=44.64 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.2
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|+|||+|..+|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999864
No 225
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.10 E-value=0.085 Score=49.43 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.9
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+..++|+||+|+|||++++.+.+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 3478999999999999999998764
No 226
>PRK12288 GTPase RsgA; Reviewed
Probab=93.07 E-value=0.071 Score=52.71 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=21.4
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.++++|+|+||||||||.+.|..+
T Consensus 205 ~ki~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 205 GRISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred hCCEEEECCCCCCHHHHHHHhccc
Confidence 457899999999999999999854
No 227
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=93.07 E-value=0.076 Score=45.78 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=24.0
Q ss_pred EeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCC
Q psy16959 109 LIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKD 144 (366)
Q Consensus 109 L~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~ 144 (366)
|+|++|||||||...|..... .....+.||..|..
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~ 35 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNL 35 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcc
Confidence 589999999999999987532 22233455655543
No 228
>KOG1191|consensus
Probab=93.06 E-value=0.09 Score=53.57 Aligned_cols=59 Identities=22% Similarity=0.415 Sum_probs=48.3
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCC--CCCCcceeecCHHHHHH
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDG--EVDGQDYHFITRAQFEL 162 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~--E~~g~~y~~vs~~ef~~ 162 (366)
+--|+|+|++.+|||+|.+.|.++.-....+++-|||-.-.- +++|.++..+|..-..+
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 445899999999999999999998877888899999987433 46898888887765544
No 229
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=93.05 E-value=0.085 Score=45.31 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.5
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+.|+|+|++|+|||+|+.+|...
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~ 23 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRA 23 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Confidence 35889999999999999999865
No 230
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.03 E-value=0.088 Score=48.36 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..++++|+||+|+|||+|+..++..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999864
No 231
>PLN02842 nucleotide kinase
Probab=93.02 E-value=0.4 Score=49.66 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=19.5
Q ss_pred EEeCCCCCChHHHHHHHHhccC
Q psy16959 108 VLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 108 vL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+|+||+||||+|++..|++..+
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg 22 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFG 22 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999998764
No 232
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=93.01 E-value=0.24 Score=42.52 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=37.2
Q ss_pred CeEEEEEEcCCchhcccCCCCC-CCeEEEEcCEEcCCCCHHHHHHHHHcCCCcE-EEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHE-GDEILEINGIEIRGKSIHIVCDILVGLTGQE-MTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~-GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v-~l~ 64 (366)
.++-|-+|.|+|||+.+| |.+ .|-|+.+++..+.+ .++....+....+.. .|.
T Consensus 43 ~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~--~~~l~~~v~~~~~~~l~L~ 97 (138)
T PF04495_consen 43 EGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDD--EDDLFELVEANENKPLQLY 97 (138)
T ss_dssp CEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--S--TCHHHHHHHHTTTS-EEEE
T ss_pred ceEEEeEecCCCHHHHCC-ccccccEEEEccceecCC--HHHHHHHHHHcCCCcEEEE
Confidence 477889999999999999 887 69999999988875 466777776665543 443
No 233
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.99 E-value=0.074 Score=47.44 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=22.8
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+.+|+|.|+.||||||+++.|++...
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999998753
No 234
>PRK06851 hypothetical protein; Provisional
Probab=92.98 E-value=0.07 Score=53.07 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..++++|.|++|+||||+++++.+.
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~ 53 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEE 53 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998764
No 235
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.98 E-value=0.17 Score=47.17 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=36.5
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCC--CCCcceeecCHHHHHHHHHhcceeEE
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGE--VDGQDYHFITRAQFELDILARKFIEH 172 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E--~~g~~y~~vs~~ef~~~~~~g~fle~ 172 (366)
.-.|+|+||||+|||||...|...- .|..|+ .+|.+.......+..+....-.|+-.
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lngl~------------d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ 88 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNGLV------------DPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQ 88 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccc------------CCCcceEEecccchhccchHHHHHHHHhceeEec
Confidence 4578999999999999999987531 122222 24444444555666666666665543
No 236
>KOG3347|consensus
Probab=92.97 E-value=0.14 Score=44.51 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=32.3
Q ss_pred EEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCC--CCCCCCcceeecCHHHH
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK--DGEVDGQDYHFITRAQF 160 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr--~~E~~g~~y~~vs~~ef 160 (366)
|+++|.+|+||||++.+|++..+--.+.++.-.+.-- .+--+.-+.|+++.+.+
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv 65 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKV 65 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHH
Confidence 8899999999999999999765433333332211110 11123445566666554
No 237
>COG4639 Predicted kinase [General function prediction only]
Probab=92.96 E-value=0.07 Score=46.61 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.2
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+.+++|+|++||||||+++.....+
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~~~ 26 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFLQN 26 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCCCc
Confidence 4689999999999999999866543
No 238
>PRK07667 uridine kinase; Provisional
Probab=92.94 E-value=0.087 Score=47.43 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=21.2
Q ss_pred CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+|.|.|++||||||++..|.+..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999998753
No 239
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.94 E-value=0.09 Score=46.89 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5578999999999999999998854
No 240
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.94 E-value=0.081 Score=49.11 Aligned_cols=58 Identities=24% Similarity=0.360 Sum_probs=40.7
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCC--CCCcceeecCHHHHHHHHHhcceeEEE
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGE--VDGQDYHFITRAQFELDILARKFIEHG 173 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E--~~g~~y~~vs~~ef~~~~~~g~fle~~ 173 (366)
..-+.+|+||+|||||||+..|+-+|..-. +.|+ .+|.+ ++..++++....|-|+.+-
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~V----------t~G~I~~~Ged---I~~l~~~ERAr~GifLafQ 88 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHPKYEV----------TEGEILFDGED---ILELSPDERARAGIFLAFQ 88 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCceE----------ecceEEECCcc---cccCCHhHHHhcCCEEeec
Confidence 445789999999999999999998764211 1222 23433 5556667777889988875
No 241
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.93 E-value=0.11 Score=49.10 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=23.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
..++++|.||+|+|||+++..|++..
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998754
No 242
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.90 E-value=0.081 Score=48.02 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.8
Q ss_pred CCcEEEeCCCCCChHHHHHHHHh
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
.++++|+||+|+||||+++.++-
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999864
No 243
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.90 E-value=0.074 Score=52.57 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred CCcEEEeCCCCCChHHHHHHHHh
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
.-.+.|+|||||||||+...|+-
T Consensus 31 Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 31 GEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45788999999999999999984
No 244
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=92.85 E-value=0.092 Score=44.09 Aligned_cols=21 Identities=33% Similarity=0.735 Sum_probs=19.3
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|+|||++...|...
T Consensus 4 i~l~G~~~~GKstli~~l~~~ 24 (157)
T cd04164 4 VVIVGKPNVGKSSLLNALAGR 24 (157)
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 789999999999999999864
No 245
>PRK09087 hypothetical protein; Validated
Probab=92.83 E-value=0.087 Score=48.85 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=21.6
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.++++|+||+|||||+|++.+++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc
Confidence 3569999999999999999888653
No 246
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=92.82 E-value=0.076 Score=45.88 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.0
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..++++|++|+|||||.+.|...
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcC
Confidence 34679999999999999999864
No 247
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.82 E-value=0.094 Score=47.72 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 248
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.81 E-value=0.1 Score=49.22 Aligned_cols=25 Identities=16% Similarity=0.297 Sum_probs=21.7
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....++|.||+|+|||+++..+++.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999875
No 249
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=92.80 E-value=0.092 Score=44.44 Aligned_cols=21 Identities=24% Similarity=0.680 Sum_probs=19.1
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|++|||||+|+.++...
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 688999999999999999864
No 250
>PRK01184 hypothetical protein; Provisional
Probab=92.79 E-value=0.09 Score=46.58 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=18.8
Q ss_pred CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+|+|+||+||||||++. ++++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc
Confidence 478899999999999876 66554
No 251
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=92.78 E-value=0.11 Score=44.56 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.1
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|+++||||||+..|...
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999854
No 252
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=92.78 E-value=0.11 Score=48.85 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.4
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.++|+|+||||||||...|...
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 468899999999999999999854
No 253
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.77 E-value=0.095 Score=47.43 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999854
No 254
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.76 E-value=0.093 Score=50.62 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=20.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.+|-|.||+||||||++..|...
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3456679999999999999887643
No 255
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=92.69 E-value=0.1 Score=45.07 Aligned_cols=40 Identities=20% Similarity=0.381 Sum_probs=29.0
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK 143 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr 143 (366)
...++++|.+++|||++...|......-....++||+.+.
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~ 139 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ 139 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE
Confidence 4568899999999999999998643222333467777654
No 256
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.68 E-value=0.1 Score=47.55 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 257
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.66 E-value=0.1 Score=47.31 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999864
No 258
>PRK00089 era GTPase Era; Reviewed
Probab=92.65 E-value=0.094 Score=50.14 Aligned_cols=38 Identities=24% Similarity=0.460 Sum_probs=26.9
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p 142 (366)
..|+|+|++|||||||...|....-......+.||+..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~ 43 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHR 43 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccccc
Confidence 35889999999999999999865322233345566543
No 259
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.65 E-value=0.098 Score=46.70 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 4568999999999999999999854
No 260
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.64 E-value=0.094 Score=45.36 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=20.0
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
-++|+||+|||||+|+..|...
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcC
Confidence 3899999999999999999864
No 261
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.63 E-value=0.1 Score=47.56 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 262
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=92.63 E-value=0.1 Score=47.18 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999854
No 263
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=92.62 E-value=0.1 Score=50.41 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=21.8
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
|-+|+|.|++||||||++..|+.+.
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999875
No 264
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.61 E-value=0.1 Score=48.15 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999864
No 265
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.60 E-value=0.1 Score=47.66 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||.+.|+..
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 266
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.58 E-value=0.1 Score=47.06 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999854
No 267
>PRK12338 hypothetical protein; Provisional
Probab=92.57 E-value=0.096 Score=51.11 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=22.8
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
|.+|+|.|++|+||||++..|++..+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCC
Confidence 45788999999999999999998754
No 268
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=92.56 E-value=0.1 Score=44.38 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|++|||||+|+.+|+..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999864
No 269
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.51 E-value=0.11 Score=47.06 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 270
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.50 E-value=0.11 Score=47.16 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999998854
No 271
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=92.50 E-value=0.11 Score=48.16 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999854
No 272
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.50 E-value=0.11 Score=49.73 Aligned_cols=26 Identities=23% Similarity=0.575 Sum_probs=22.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+..++|+||+|+|||+|+..+++..
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34569999999999999999998764
No 273
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=92.50 E-value=0.12 Score=44.11 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=18.9
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|++|||||+|+.+|..+
T Consensus 3 i~vvG~~~~GKtsl~~~l~~~ 23 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999754
No 274
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.50 E-value=0.075 Score=46.16 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=17.9
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|+.|+|||||+..|.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 275
>PF13245 AAA_19: Part of AAA domain
Probab=92.49 E-value=0.12 Score=39.44 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=16.8
Q ss_pred CCcEEEeCCCCCChHHHHHHHH
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLM 125 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~ 125 (366)
.+.++|.||+|+|||+++..++
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4567889999999996555544
No 276
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=92.49 E-value=0.25 Score=51.85 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=24.2
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.....|+|+|..|+||||+.+.|++..+
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~ 31 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMR 31 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhC
Confidence 4556899999999999999999998753
No 277
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.48 E-value=0.11 Score=48.46 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=21.2
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.++++|+||+|+|||+|+..++..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999988764
No 278
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.47 E-value=0.11 Score=47.11 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 279
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=92.47 E-value=0.1 Score=43.71 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.4
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|||||+|+.+|...
T Consensus 3 v~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 789999999999999999865
No 280
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.46 E-value=0.11 Score=47.96 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999854
No 281
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=92.43 E-value=0.11 Score=44.40 Aligned_cols=21 Identities=19% Similarity=0.597 Sum_probs=19.0
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|||||+|+.++...
T Consensus 3 i~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 688999999999999999864
No 282
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=92.41 E-value=0.11 Score=47.30 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999854
No 283
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.40 E-value=0.11 Score=47.75 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999864
No 284
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=92.39 E-value=0.12 Score=43.58 Aligned_cols=21 Identities=14% Similarity=0.574 Sum_probs=19.1
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|||||+|..+|...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999854
No 285
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=92.39 E-value=0.11 Score=47.20 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4578999999999999999999854
No 286
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.32 E-value=0.14 Score=48.92 Aligned_cols=26 Identities=31% Similarity=0.753 Sum_probs=22.5
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...+|++|+||+|+|||.+++.+.+.
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HcCCcEEEECCCCCchhHHHHhhhcc
Confidence 35789999999999999999887654
No 287
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.31 E-value=0.11 Score=45.19 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=19.8
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
++.|+|++|||||||+.+|+..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 288
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.29 E-value=0.11 Score=47.06 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.3
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.|+||+|+|||||++.|+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8899999999999999999854
No 289
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.27 E-value=0.11 Score=47.35 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998854
No 290
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.27 E-value=0.1 Score=46.11 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=30.4
Q ss_pred hHHHHHHHHcCCeEEEcccch-h---hhccccCCCCcEEEEEeCCCHHHHHHHH
Q psy16959 301 LDAIRTVVNAGKICVLNLHPQ-S---LKILRSSDLKPFVIFVAPPPFELLKQKR 350 (366)
Q Consensus 301 ~~~i~~vir~~k~~~l~~~p~-~---~~~l~~~~~~p~vi~~~~~~~~~l~~~~ 350 (366)
.+++..++...+.++.++... . ++.++.. ..-.++-+...||+.|++.+
T Consensus 115 ~~~v~~~l~s~~~vi~vv~~~~~~~~l~~i~~~-~~~~i~~vt~~NRd~l~~~i 167 (168)
T PF03266_consen 115 REAVEKLLDSNKPVIGVVHKRSDNPFLEEIKRR-PDVKIFEVTEENRDALPEEI 167 (168)
T ss_dssp HHHHHHHHCTTSEEEEE--SS--SCCHHHHHTT-TTSEEEE--TTTCCCHHHHH
T ss_pred HHHHHHHHcCCCcEEEEEecCCCcHHHHHHHhC-CCcEEEEeChhHHhhHhhhh
Confidence 457788888888899888886 2 3444322 12455667888999998765
No 291
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=92.26 E-value=0.063 Score=45.20 Aligned_cols=20 Identities=35% Similarity=0.728 Sum_probs=18.0
Q ss_pred EEeCCCCCChHHHHHHHHhc
Q psy16959 108 VLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 108 vL~GpsgsGK~~L~~~L~~~ 127 (366)
+|+|.+|+|||+|..+|...
T Consensus 1 ~l~G~~~~GKssl~~~l~~~ 20 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGR 20 (157)
T ss_pred CccCCCCCCHHHHHHHHhCC
Confidence 47899999999999999865
No 292
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.23 E-value=0.14 Score=53.21 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+..+.|+||||||||||++.|...
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999865
No 293
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.21 E-value=0.12 Score=47.20 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 294
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.20 E-value=0.12 Score=43.67 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.3
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.++|+||+|+|||+++..++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH
Confidence 3689999999999999999764
No 295
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.19 E-value=0.13 Score=47.02 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 296
>KOG3532|consensus
Probab=92.18 E-value=0.34 Score=51.07 Aligned_cols=61 Identities=30% Similarity=0.406 Sum_probs=51.1
Q ss_pred CcEEEEeC-CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG-DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~-~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+..+.++ ..|-|-.|.+.++|.++. +.+||+++.|||.++. +..++...++...+.+..+
T Consensus 389 g~vf~~~~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l 450 (1051)
T KOG3532|consen 389 GLVFDKNTNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVL 450 (1051)
T ss_pred eEEEecCCceEEEEEEecCCChhhHhc-CCCcceEEEecCccch--hHHHHHHHHHhcccceEEE
Confidence 44455444 356788899999999998 9999999999999995 6699999999999998766
No 297
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=92.18 E-value=0.1 Score=47.04 Aligned_cols=27 Identities=26% Similarity=0.573 Sum_probs=21.6
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
..|..+++.|++|||||+++..+....
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~ 39 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEF 39 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence 466788999999999999999988764
No 298
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=92.17 E-value=0.12 Score=47.58 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+-.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999854
No 299
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.16 E-value=0.12 Score=47.70 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4568999999999999999999854
No 300
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.14 E-value=0.13 Score=47.70 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.7
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.....+.|+||+|+|||||++.|+-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999864
No 301
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=92.13 E-value=0.13 Score=47.86 Aligned_cols=49 Identities=22% Similarity=0.395 Sum_probs=32.5
Q ss_pred EEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCC--CCCcceeecC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGE--VDGQDYHFIT 156 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E--~~g~~y~~vs 156 (366)
++|+|++++|||+|+.+|..... .....++||..|..+. .++....+++
T Consensus 3 v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~D 53 (233)
T cd01896 3 VALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLD 53 (233)
T ss_pred EEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEE
Confidence 67999999999999999986421 1223456676665553 3555555544
No 302
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=92.11 E-value=0.13 Score=47.17 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.4
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 5678999999999999999999854
No 303
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=92.10 E-value=0.15 Score=47.12 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=20.1
Q ss_pred CCcEEEeCCCCCChHHHHHHHH
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLM 125 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~ 125 (366)
+.+..|+||+|+|||||+..|.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 5688999999999999999986
No 304
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=92.10 E-value=0.13 Score=46.56 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999864
No 305
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.10 E-value=0.13 Score=47.10 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5678999999999999999999854
No 306
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=92.06 E-value=0.09 Score=49.55 Aligned_cols=25 Identities=12% Similarity=0.355 Sum_probs=21.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+--|+|+|.+|+|||+|...|...
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4445889999999999999999865
No 307
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=92.05 E-value=0.13 Score=47.04 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999864
No 308
>PRK06893 DNA replication initiation factor; Validated
Probab=92.05 E-value=0.12 Score=47.92 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=20.2
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+.++|.||+|+|||.|+..++..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999999864
No 309
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.99 E-value=0.15 Score=44.92 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||.+.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999854
No 310
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=91.98 E-value=0.13 Score=45.49 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.9
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..-|+|+|++|+|||+|..+|+..
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 344899999999999999999864
No 311
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=91.97 E-value=0.13 Score=43.66 Aligned_cols=21 Identities=24% Similarity=0.651 Sum_probs=19.0
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|++|||||+|+.+|...
T Consensus 3 i~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999853
No 312
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=91.97 E-value=0.12 Score=43.63 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=18.6
Q ss_pred EEEeCCCCCChHHHHHHHHh
Q psy16959 107 IVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~ 126 (366)
|+|+|++|+|||+|...|..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999999994
No 313
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.95 E-value=0.15 Score=45.15 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999854
No 314
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=91.93 E-value=0.14 Score=45.39 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=22.9
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..+.+++|+|++|+||||++..|...
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999875
No 315
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=91.93 E-value=0.54 Score=48.66 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.1
Q ss_pred cEEEeCCCCCChHHHHHHHHhccC
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.|+|+|+.|+||||+++.|++..+
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg 25 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLD 25 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999997653
No 316
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.92 E-value=0.13 Score=46.03 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
...++.|+||+|+|||||++.|+-
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999984
No 317
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=91.91 E-value=0.14 Score=47.05 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999854
No 318
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.89 E-value=0.13 Score=53.08 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=21.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.++++.|+||+||||||.+.+|+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHH
Confidence 4578999999999999999999853
No 319
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=91.89 E-value=0.13 Score=51.78 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=23.6
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
...+.|+|+|++|+|||||+..|++..
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999999864
No 320
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=91.89 E-value=0.15 Score=44.62 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999999864
No 321
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.87 E-value=0.14 Score=46.18 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||.+.|+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999854
No 322
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=91.86 E-value=0.14 Score=48.10 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999864
No 323
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.85 E-value=0.15 Score=44.89 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 324
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=91.84 E-value=0.17 Score=44.48 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...-|+|+|++|+|||||+.+|...
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445899999999999999999864
No 325
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=91.83 E-value=0.15 Score=47.21 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999854
No 326
>PRK10908 cell division protein FtsE; Provisional
Probab=91.83 E-value=0.15 Score=46.66 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999854
No 327
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.81 E-value=0.13 Score=51.61 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=21.7
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+++++|+||+||||||.+.+|+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999854
No 328
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.81 E-value=0.15 Score=43.60 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 5578999999999999999999864
No 329
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.80 E-value=0.15 Score=45.72 Aligned_cols=25 Identities=12% Similarity=0.124 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 330
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=91.78 E-value=0.15 Score=45.42 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=29.9
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccC--------CcceeeeccCCCCCCCC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSD--------RFAAAIPHTSRPMKDGE 146 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~--------~~~~~~~~tTr~pr~~E 146 (366)
+..++|+|.+|+|||||...|..... ......+.||+.+....
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~ 177 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIP 177 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEe
Confidence 45689999999999999999986321 12233556777764433
No 331
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.76 E-value=0.15 Score=45.62 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.3
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+.+.+|-|+|.||||||||+..|.+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~ 46 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEK 46 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 34567789999999999999999875
No 332
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=91.76 E-value=0.15 Score=43.53 Aligned_cols=21 Identities=29% Similarity=0.710 Sum_probs=19.3
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|+++||||+|..+|...
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999864
No 333
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=91.76 E-value=0.15 Score=43.42 Aligned_cols=21 Identities=19% Similarity=0.608 Sum_probs=19.0
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|||||+|+.+++..
T Consensus 4 i~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 788999999999999999864
No 334
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=91.75 E-value=0.15 Score=45.92 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 335
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.73 E-value=0.16 Score=47.57 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 336
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=91.71 E-value=0.13 Score=47.13 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.6
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
..|+|.||-|+|||||++.|+++..
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHhC
Confidence 5789999999999999999999754
No 337
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.71 E-value=0.14 Score=51.51 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.++.|.|+||+||||||++..|+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999999753
No 338
>KOG0606|consensus
Probab=91.70 E-value=0.24 Score=54.87 Aligned_cols=52 Identities=29% Similarity=0.351 Sum_probs=47.3
Q ss_pred EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.|..|.+||||..+| |+.||.|.-|||..+.++.|.+++++|-...+.+.+-
T Consensus 661 ~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~gn~v~~~ 712 (1205)
T KOG0606|consen 661 SVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSGNKVTLR 712 (1205)
T ss_pred eeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcCCeeEEE
Confidence 567889999999999 9999999999999999999999999998877777654
No 339
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.70 E-value=0.11 Score=44.43 Aligned_cols=22 Identities=27% Similarity=0.684 Sum_probs=19.9
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+|.++|+++||||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999875
No 340
>PRK05439 pantothenate kinase; Provisional
Probab=91.69 E-value=0.16 Score=49.55 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=20.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+-+|.|.|++||||||++..|...
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3445679999999999999999864
No 341
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.69 E-value=0.15 Score=49.92 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=21.7
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.++.|+||+|+||||++..|+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4568899999999999999999854
No 342
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=91.68 E-value=0.15 Score=46.96 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 343
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=91.65 E-value=0.16 Score=47.13 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999854
No 344
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.64 E-value=0.16 Score=47.15 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.5
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.....+.|+||+|+|||||++.|+-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999854
No 345
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=91.64 E-value=0.17 Score=44.87 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.6
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.....+.|+||+|+|||||++.|+..
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999864
No 346
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=91.64 E-value=0.16 Score=46.68 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999854
No 347
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.63 E-value=0.16 Score=46.22 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999854
No 348
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=91.63 E-value=0.16 Score=46.27 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999999854
No 349
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=91.62 E-value=0.15 Score=42.11 Aligned_cols=21 Identities=43% Similarity=0.922 Sum_probs=19.2
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|||||+|+..|...
T Consensus 4 i~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 4 IVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999864
No 350
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.61 E-value=0.17 Score=44.71 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4578999999999999999999854
No 351
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=91.60 E-value=0.16 Score=47.03 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 352
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.60 E-value=0.15 Score=46.98 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.4
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..++..|+||||+||||+...|-+.
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHhh
Confidence 4568899999999999999888654
No 353
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=91.60 E-value=0.15 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
.+..+.|+||+|+|||||++.|+.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999985
No 354
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.59 E-value=0.16 Score=48.46 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=22.0
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..+++++++||+|+||||++..|+..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34678899999999999999988754
No 355
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=91.59 E-value=0.14 Score=43.85 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=19.0
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|+|||+|..+|...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhh
Confidence 689999999999999999754
No 356
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.58 E-value=0.16 Score=46.68 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999864
No 357
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.57 E-value=0.15 Score=50.63 Aligned_cols=24 Identities=13% Similarity=0.376 Sum_probs=21.2
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...|+|+|||||||||++..|+..
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~ 157 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRE 157 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998754
No 358
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=91.57 E-value=0.15 Score=43.43 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=19.0
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|+++||||+|+.+|...
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999754
No 359
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=91.54 E-value=0.15 Score=46.12 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=18.8
Q ss_pred cEEEeCCCCCChHHHHHHHH
Q psy16959 106 PIVLIGPPNIGRHELRQRLM 125 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~ 125 (366)
.++|+||+|+|||||+..|.
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999886
No 360
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.54 E-value=0.17 Score=45.89 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5578999999999999999999854
No 361
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=91.54 E-value=0.15 Score=53.21 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=23.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
..++++|+||+|+||||.++.|+++.
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999874
No 362
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=91.52 E-value=0.15 Score=46.13 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.1
Q ss_pred CCcEEEeCCCCCChHHHHHHHHh
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
.-.++|+||||+||||+.+.|..
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~ 50 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYG 50 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999999874
No 363
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=91.52 E-value=0.23 Score=52.24 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4567999999999999999999865
No 364
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.51 E-value=0.17 Score=46.46 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999854
No 365
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.51 E-value=0.17 Score=45.89 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.4
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999864
No 366
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=91.51 E-value=0.14 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.8
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+|.|+|.+|||||||+..|.+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~ 25 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERR 25 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999875
No 367
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=91.51 E-value=0.18 Score=51.08 Aligned_cols=26 Identities=31% Similarity=0.723 Sum_probs=22.7
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+.-|+|+||+|+|||+++..|++..+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999998643
No 368
>CHL00181 cbbX CbbX; Provisional
Probab=91.51 E-value=0.18 Score=48.47 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=21.0
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++|.||+|+|||+++..+++.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 445899999999999999999864
No 369
>KOG0744|consensus
Probab=91.50 E-value=0.13 Score=50.07 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=22.9
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.|+|.|.||+|.|||+|.+.|++..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh
Confidence 5889999999999999999999864
No 370
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=91.49 E-value=0.15 Score=46.71 Aligned_cols=25 Identities=12% Similarity=0.326 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCc
Confidence 4568999999999999999999854
No 371
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=91.48 E-value=0.16 Score=43.98 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.9
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
=|+|+|++|||||+|+.++...
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999864
No 372
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=91.48 E-value=0.18 Score=45.84 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=18.6
Q ss_pred cEEEeCCCCCChHHHHHHHH
Q psy16959 106 PIVLIGPPNIGRHELRQRLM 125 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~ 125 (366)
+++|+||+|+|||||...|.
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999874
No 373
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=91.46 E-value=0.17 Score=46.74 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 374
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=91.46 E-value=0.17 Score=47.84 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999999864
No 375
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=91.46 E-value=0.16 Score=48.91 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
..++|+|+|++|||||++++.|..
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~ 28 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALED 28 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHH
Confidence 446899999999999999999964
No 376
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=91.45 E-value=0.16 Score=43.11 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=19.0
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|+++||||+|+.+|...
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999854
No 377
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=91.45 E-value=0.15 Score=42.94 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
...+|+|.|+-|+|||++++.+++..
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999754
No 378
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.44 E-value=0.18 Score=45.46 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999999864
No 379
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.44 E-value=0.18 Score=49.33 Aligned_cols=27 Identities=11% Similarity=0.227 Sum_probs=23.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
..+.|+|.||+|+|||+++..|++..+
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~ 89 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLN 89 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHC
Confidence 467899999999999999999998643
No 380
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.43 E-value=0.17 Score=44.90 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 381
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=91.43 E-value=0.14 Score=46.42 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=22.6
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...+.+.|+|+.|+|||||..+|.+.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34577889999999999999999875
No 382
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=91.41 E-value=0.18 Score=45.36 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 383
>PHA02244 ATPase-like protein
Probab=91.41 E-value=0.21 Score=49.81 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=23.7
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
....+|+|.||+|+|||+|+..|+...
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998763
No 384
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=91.41 E-value=0.17 Score=43.53 Aligned_cols=21 Identities=14% Similarity=0.608 Sum_probs=19.1
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|+++||||+|+.+|...
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999764
No 385
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.40 E-value=0.17 Score=45.65 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 386
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.37 E-value=0.17 Score=49.99 Aligned_cols=25 Identities=20% Similarity=0.522 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.-|+|+||+||||||++..|...
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcc
Confidence 3567999999999999999999876
No 387
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=91.37 E-value=0.2 Score=50.63 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=25.2
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCCcceeee
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIP 136 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~ 136 (366)
|+-|+|+||+|+|||+++..|++..+.-.+.++
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 456899999999999999999986443333343
No 388
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.36 E-value=0.18 Score=44.01 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||.+.|+..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999854
No 389
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=91.35 E-value=0.17 Score=46.81 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=22.4
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999864
No 390
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=91.34 E-value=0.18 Score=47.01 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999854
No 391
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=91.34 E-value=4.1 Score=38.33 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.1
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+|.|+|..||||||++..|.+.
T Consensus 3 iIGlTGgIgSGKStVs~~L~~~ 24 (244)
T PTZ00451 3 LIGLTGGIACGKSTVSRILREE 24 (244)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999875
No 392
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.33 E-value=0.16 Score=46.22 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=21.0
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..+.|+||+|+|||||++.|+..
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCC
Confidence 78899999999999999999854
No 393
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=91.31 E-value=0.18 Score=53.75 Aligned_cols=40 Identities=25% Similarity=0.498 Sum_probs=30.2
Q ss_pred cccceeeeccccCCC-CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 88 ILTYEEVSLYYPRSN-EKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 88 ~~~YE~V~~~~~~~~-~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
++-|=.|..+. .. ...+++|+||+|||||+|++.+++..+
T Consensus 335 IlEyLAV~~l~--~~~kGpILcLVGPPGVGKTSLgkSIA~al~ 375 (782)
T COG0466 335 ILEYLAVQKLT--KKLKGPILCLVGPPGVGKTSLGKSIAKALG 375 (782)
T ss_pred HHHHHHHHHHh--ccCCCcEEEEECCCCCCchhHHHHHHHHhC
Confidence 55666676663 33 446779999999999999999997543
No 394
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.28 E-value=0.25 Score=44.15 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..-.++|.||||+|||||.+.|-.+
T Consensus 36 aGECvvL~G~SG~GKStllr~LYaN 60 (235)
T COG4778 36 AGECVVLHGPSGSGKSTLLRSLYAN 60 (235)
T ss_pred CccEEEeeCCCCCcHHHHHHHHHhc
Confidence 4567899999999999999999754
No 395
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=91.27 E-value=0.17 Score=44.68 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.0
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.-|+|+|++|||||+|+.+|...
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 34699999999999999999854
No 396
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.27 E-value=0.18 Score=46.85 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+..+.|+||+|+|||||++.|+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 397
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.27 E-value=0.16 Score=51.46 Aligned_cols=24 Identities=17% Similarity=0.494 Sum_probs=20.9
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+++++|+||+||||||++.+|+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999853
No 398
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.25 E-value=0.26 Score=46.54 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=22.0
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...|+++||+||||||++..|.+.
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCccccchHHHHHhhh
Confidence 578999999999999999999875
No 399
>PRK08727 hypothetical protein; Validated
Probab=91.25 E-value=0.17 Score=46.97 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.4
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+++|+||+|+|||.|++.++..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998653
No 400
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=91.24 E-value=0.18 Score=50.97 Aligned_cols=26 Identities=42% Similarity=0.557 Sum_probs=22.5
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
...++|+||+|+|||++++.|++..+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999997643
No 401
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.22 E-value=0.2 Score=44.00 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999999864
No 402
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=91.20 E-value=0.17 Score=42.98 Aligned_cols=21 Identities=24% Similarity=0.475 Sum_probs=19.1
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|||||+|+.++...
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 689999999999999999864
No 403
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.17 E-value=0.17 Score=44.84 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.8
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.++|+||+|||||+++..|+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58899999999999999998764
No 404
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.16 E-value=1.7 Score=46.25 Aligned_cols=25 Identities=12% Similarity=0.367 Sum_probs=21.5
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
..++|+||.|+|||+++..|++..+
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4578999999999999999987643
No 405
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=91.14 E-value=0.13 Score=45.29 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=19.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHH
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLM 125 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~ 125 (366)
.+.+.+|+||+|+|||||+..|.
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~ 40 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIR 40 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHH
Confidence 44688999999999999998875
No 406
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=91.13 E-value=0.18 Score=45.51 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
.++.++|+||+|+||||+.+.++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 347899999999999999999874
No 407
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.11 E-value=0.17 Score=49.41 Aligned_cols=27 Identities=22% Similarity=0.553 Sum_probs=23.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.++.++|.||+|+|||+++..+++..+
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhC
Confidence 346799999999999999999998643
No 408
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=91.11 E-value=0.2 Score=45.28 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.2
Q ss_pred CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+.|.|+|+.|||||++++.|.+..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~ 25 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK 25 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 368899999999999999998763
No 409
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=91.10 E-value=0.25 Score=53.18 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=33.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCC--CCCcceeecCHHHHHH
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGE--VDGQDYHFITRAQFEL 162 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E--~~g~~y~~vs~~ef~~ 162 (366)
.+..+.|+||+|||||||++.|+.... |..|+ .+|.+...++..++.+
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFET------------PESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCEEEECCEEcCcCCHHHHHh
Confidence 456799999999999999999987521 22332 3666666566555443
No 410
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.10 E-value=1.6 Score=45.39 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=35.8
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEec
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEK 177 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g 177 (366)
..++|+||.|+|||+++..|++..+-. ...+.. ....++....++.|.+.+.-+.++
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~----~~~~~~------------pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRILAKCLNCE----KGVSAN------------PCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcCC----CCCCcc------------cCCCCHHHHHHhcCCCceEEEEcc
Confidence 457899999999999999999864310 000100 122344566677777766665553
No 411
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.08 E-value=0.18 Score=48.17 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.8
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
++.|+|++||||||+++.|+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~l 22 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSL 22 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999875
No 412
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=91.08 E-value=0.19 Score=46.73 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5678999999999999999999853
No 413
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=91.07 E-value=0.2 Score=45.84 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999864
No 414
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=91.06 E-value=0.19 Score=46.97 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 415
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=91.03 E-value=0.19 Score=43.18 Aligned_cols=21 Identities=33% Similarity=0.781 Sum_probs=18.8
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|.+|||||+|+.++...
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998753
No 416
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.03 E-value=0.19 Score=46.75 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+..+.|+||+|+|||||++.|+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999854
No 417
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=91.03 E-value=0.2 Score=46.44 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 418
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=91.02 E-value=0.19 Score=43.14 Aligned_cols=21 Identities=33% Similarity=0.669 Sum_probs=18.9
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|++|||||+|..++...
T Consensus 5 i~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 5 LLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 688999999999999999854
No 419
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=91.01 E-value=0.19 Score=46.26 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999854
No 420
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=91.01 E-value=0.17 Score=45.67 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.7
Q ss_pred CcEEEeCCCCCChHHHHHHHH
Q psy16959 105 RPIVLIGPPNIGRHELRQRLM 125 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~ 125 (366)
+.++|+||+|+|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 421
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.01 E-value=0.2 Score=46.10 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999854
No 422
>KOG0058|consensus
Probab=91.00 E-value=0.27 Score=52.36 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.4
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...+.|+||+|+||||++..|-+-
T Consensus 494 Ge~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 494 GEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998874
No 423
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=90.99 E-value=0.19 Score=43.62 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=18.5
Q ss_pred EEEeCCCCCChHHHHHHHHh
Q psy16959 107 IVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~ 126 (366)
|+++|++|||||+|..++..
T Consensus 5 i~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 5 IIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999975
No 424
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.97 E-value=0.19 Score=50.94 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.4
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
.+..+.|+||+|+||||++.+|+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998875
No 425
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.96 E-value=0.2 Score=48.57 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.++.++|+||+||||||++..|...
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~ 155 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAE 155 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999865
No 426
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=90.96 E-value=0.2 Score=46.25 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999999854
No 427
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.95 E-value=0.2 Score=46.77 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999854
No 428
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=90.93 E-value=0.2 Score=46.06 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5578999999999999999999864
No 429
>KOG0731|consensus
Probab=90.92 E-value=0.3 Score=52.64 Aligned_cols=44 Identities=18% Similarity=0.470 Sum_probs=35.7
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILAR 167 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g 167 (366)
||=++|+||+|+|||-||+.++-+ .|+++.++|-.||.+++...
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGE--------------------AgVPF~svSGSEFvE~~~g~ 387 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGE--------------------AGVPFFSVSGSEFVEMFVGV 387 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcc--------------------cCCceeeechHHHHHHhccc
Confidence 567999999999999999988755 45677888888888776554
No 430
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.91 E-value=0.19 Score=47.59 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4568999999999999999999854
No 431
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=90.91 E-value=0.2 Score=47.54 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999854
No 432
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=90.90 E-value=0.27 Score=51.02 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|...
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~ 371 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGF 371 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999864
No 433
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.89 E-value=0.21 Score=46.95 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999853
No 434
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=90.88 E-value=0.21 Score=41.66 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=19.0
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|+++||||+|..+|...
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999754
No 435
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.86 E-value=0.19 Score=45.45 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 4568999999999999999999864
No 436
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=90.85 E-value=0.2 Score=42.87 Aligned_cols=21 Identities=38% Similarity=0.729 Sum_probs=19.2
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|+++||||+|..+|...
T Consensus 6 i~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 6 IVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999854
No 437
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=90.85 E-value=0.25 Score=53.42 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+..+.|+||||+|||||++.|...
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4567999999999999999999875
No 438
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=90.83 E-value=0.2 Score=47.03 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=21.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999853
No 439
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.83 E-value=0.19 Score=48.03 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999864
No 440
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.82 E-value=0.21 Score=46.68 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
...++.|+||+|+|||||++.|+.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999984
No 441
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=90.82 E-value=0.2 Score=43.02 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=18.6
Q ss_pred cEEEeCCCCCChHHHHHHHHh
Q psy16959 106 PIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~ 126 (366)
=|+++|++|+|||+|+.+|..
T Consensus 5 kv~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 5 KIILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 378899999999999999864
No 442
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=90.82 E-value=0.21 Score=45.45 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999854
No 443
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.82 E-value=0.18 Score=51.19 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=20.9
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+++++|+||+||||||++..|+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999888753
No 444
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=90.82 E-value=0.21 Score=45.43 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=22.9
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.....+.|+||+|+|||||++.|+..
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999864
No 445
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=90.80 E-value=0.24 Score=50.13 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=22.0
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+..|+|.||+|+|||++++.|++..
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhc
Confidence 3569999999999999999999764
No 446
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=90.80 E-value=0.21 Score=42.17 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=19.1
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|++|||||+|..+|...
T Consensus 3 i~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999864
No 447
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=90.79 E-value=0.21 Score=47.61 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 26 PGRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999854
No 448
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.79 E-value=0.21 Score=47.30 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999864
No 449
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=90.78 E-value=0.21 Score=43.16 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=19.3
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|++|+|||+|+.++...
T Consensus 6 i~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 6 LLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 789999999999999999864
No 450
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.78 E-value=0.21 Score=47.34 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999854
No 451
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=90.76 E-value=0.18 Score=43.53 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=26.1
Q ss_pred EEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p 142 (366)
|+++|+.++|||||...|...+ .+......+|+.|
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~-ilp~~~~~~T~~~ 35 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRP-ILPSGVGPCTAVP 35 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS--SSSSSSSTTSSE
T ss_pred CEEEcCCCCCHHHHHHHHHhcc-cCcccccccccce
Confidence 6899999999999999999753 3344444566665
No 452
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=90.75 E-value=0.22 Score=45.35 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999999854
No 453
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=90.75 E-value=0.21 Score=46.54 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.4
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
.+..+.|+||+|+|||||++.|+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999974
No 454
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=90.73 E-value=0.21 Score=42.79 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=19.2
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|++|||||+|..+|...
T Consensus 3 i~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999865
No 455
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.73 E-value=0.21 Score=47.11 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
....+.|+||+|+|||||++.|+.
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999985
No 456
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=90.72 E-value=0.21 Score=43.33 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=18.9
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|++|||||+|+.++...
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (166)
T cd00877 3 LVLVGDGGTGKTTFVKRHLTG 23 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998753
No 457
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=90.72 E-value=0.22 Score=45.75 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 458
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=90.72 E-value=0.22 Score=47.05 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
.+.++.|+||+|+|||||++.+.-
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999886
No 459
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=90.72 E-value=0.2 Score=44.90 Aligned_cols=22 Identities=23% Similarity=0.622 Sum_probs=19.7
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
-|+|+|++|||||+|+.++...
T Consensus 8 kivvvG~~~vGKTsli~~l~~~ 29 (199)
T cd04110 8 KLLIIGDSGVGKSSLLLRFADN 29 (199)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999854
No 460
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=90.72 E-value=0.21 Score=42.96 Aligned_cols=20 Identities=25% Similarity=0.642 Sum_probs=18.3
Q ss_pred EEEeCCCCCChHHHHHHHHh
Q psy16959 107 IVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~ 126 (366)
|+++|++|||||+|..++..
T Consensus 2 i~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 78999999999999999875
No 461
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=90.71 E-value=0.21 Score=43.78 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.8
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+++.|+|++|||||||+.+|+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999875
No 462
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=90.71 E-value=0.21 Score=43.00 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=19.2
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|++|||||+|..+|...
T Consensus 4 i~i~G~~~~GKSsli~~l~~~ 24 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADD 24 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 463
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=90.71 E-value=0.2 Score=46.79 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 464
>PRK05642 DNA replication initiation factor; Validated
Probab=90.70 E-value=0.21 Score=46.50 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=20.6
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
++++|.||+|+|||.|+..++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~ 68 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR 68 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988754
No 465
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=90.69 E-value=0.22 Score=42.36 Aligned_cols=21 Identities=29% Similarity=0.687 Sum_probs=18.9
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|+++||||+|..+|...
T Consensus 3 i~liG~~~~GKSsli~~l~~~ 23 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999754
No 466
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.69 E-value=0.2 Score=45.74 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
..-.+++.||||+|||||.+.++-
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhc
Confidence 456899999999999999999874
No 467
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=90.69 E-value=0.22 Score=46.79 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999854
No 468
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.67 E-value=0.22 Score=46.55 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999853
No 469
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.66 E-value=0.22 Score=46.45 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
...++.|+||+|+|||||++.|+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999975
No 470
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=90.65 E-value=0.28 Score=47.64 Aligned_cols=25 Identities=16% Similarity=0.501 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+..++|+||+||||||++..|+..
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~ 167 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDE 167 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcc
Confidence 4568999999999999999999875
No 471
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=90.62 E-value=0.2 Score=42.57 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=19.0
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|||||+|+.+|...
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~ 22 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPE 22 (162)
T ss_pred EEEECCCCCCHHHHHHHHccc
Confidence 688999999999999999864
No 472
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=90.60 E-value=0.22 Score=46.78 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999853
No 473
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.60 E-value=0.22 Score=48.83 Aligned_cols=25 Identities=32% Similarity=0.707 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.|+=|+.+||||||||.++.+|++-
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl 73 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999999974
No 474
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=90.60 E-value=0.22 Score=43.25 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=19.3
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|||||+|..++...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999864
No 475
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.59 E-value=0.23 Score=45.78 Aligned_cols=25 Identities=16% Similarity=0.450 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999854
No 476
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=90.59 E-value=0.2 Score=49.36 Aligned_cols=29 Identities=28% Similarity=0.539 Sum_probs=24.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRF 131 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~ 131 (366)
.+++++|.||.|+|||+|+..|.+-...+
T Consensus 87 ~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 87 RKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 56889999999999999999998754433
No 477
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=90.59 E-value=0.24 Score=44.68 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=22.7
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.....+.|+||+|+|||||++.|+..
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 35678999999999999999999864
No 478
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=90.58 E-value=0.15 Score=42.23 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=17.2
Q ss_pred EeCCCCCChHHHHHHHHhc
Q psy16959 109 LIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 109 L~GpsgsGK~~L~~~L~~~ 127 (366)
|+|++|||||||+..|...
T Consensus 1 i~G~~gsGKstl~~~l~~~ 19 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ 19 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc
Confidence 5899999999999999864
No 479
>KOG0056|consensus
Probab=90.58 E-value=0.2 Score=51.37 Aligned_cols=52 Identities=25% Similarity=0.461 Sum_probs=37.4
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHH
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~ 164 (366)
..+.+.|+||||+||||++..|.+-.+.-.-++ +++|.+...|+.....+.+
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI----------~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSI----------TIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceE----------EEcCchHHHHHHHHHHHhc
Confidence 467899999999999999999988654322232 3567777777766655543
No 480
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=90.57 E-value=0.22 Score=47.11 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999854
No 481
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.57 E-value=0.23 Score=46.31 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=21.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
....+.|+||+|+|||||++.|+.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999985
No 482
>PRK09183 transposase/IS protein; Provisional
Probab=90.57 E-value=0.19 Score=47.55 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=21.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....++|+||+|+|||+|+..|+..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3456899999999999999998643
No 483
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=90.57 E-value=0.2 Score=52.75 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=25.0
Q ss_pred cCCCCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 99 PRSNEKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 99 ~~~~~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
|+...+..|+|+|++|||||||++.|++..
T Consensus 387 ~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 387 PRHKQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred cccCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 444455678999999999999999999864
No 484
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.56 E-value=0.23 Score=47.03 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 485
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=90.56 E-value=0.23 Score=46.08 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 486
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=90.53 E-value=0.24 Score=45.39 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+-.
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999854
No 487
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=90.53 E-value=0.23 Score=46.38 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999854
No 488
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=90.51 E-value=0.22 Score=46.69 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+..+.|+||+|+|||||++.|+..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999864
No 489
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=90.51 E-value=0.32 Score=56.87 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||||||||||++.|...
T Consensus 1193 ~G~~vAIVG~SGsGKSTl~~LL~r~ 1217 (1466)
T PTZ00265 1193 SKKTTAIVGETGSGKSTVMSLLMRF 1217 (1466)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999874
No 490
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=90.51 E-value=0.21 Score=43.43 Aligned_cols=22 Identities=23% Similarity=0.599 Sum_probs=19.7
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
-|+|+|++|||||+|+.+|...
T Consensus 16 kv~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 16 RILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHccC
Confidence 4789999999999999999865
No 491
>PLN02348 phosphoribulokinase
Probab=90.50 E-value=0.22 Score=49.88 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=21.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+.+|-|.|++||||||++++|++..
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34456699999999999999999764
No 492
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.50 E-value=0.23 Score=45.19 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 493
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.47 E-value=0.23 Score=47.05 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4578999999999999999999854
No 494
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=90.47 E-value=0.23 Score=46.21 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
....+.|+||+|+|||||++.|+-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999985
No 495
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=90.47 E-value=0.22 Score=44.63 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.4
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.-|+|+|++|||||+|...|...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 35789999999999999999865
No 496
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=90.46 E-value=0.23 Score=45.88 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+..+.|+||+|+|||||++.|+-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 4678999999999999999999864
No 497
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=90.45 E-value=0.23 Score=43.21 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|++|||||+|+.+|...
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~ 22 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE 22 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999864
No 498
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=90.44 E-value=0.22 Score=46.96 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 4568999999999999999999854
No 499
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=90.44 E-value=0.23 Score=42.90 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.0
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+++|++|+|||+|+.++...
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~ 23 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYAND 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999864
No 500
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.42 E-value=0.37 Score=50.73 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=32.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHH
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFEL 162 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~ 162 (366)
.+..+.|+||||+|||||++.|....+.-+.. ..+|.+..-++.++..+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I-----------~i~g~~i~~~~~~~lr~ 423 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFLPYQGSL-----------KINGIELRELDPESWRK 423 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCcEE-----------EECCEecccCCHHHHHh
Confidence 45789999999999999999998642111111 13566666666655544
Done!