Query psy16959
Match_columns 366
No_of_seqs 232 out of 2685
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 18:05:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xkx_A Disks large homolog 4; 100.0 3.7E-35 1.3E-39 311.8 21.9 232 1-355 321-663 (721)
2 3tvt_A Disks large 1 tumor sup 100.0 4.9E-32 1.7E-36 258.4 11.4 163 71-355 64-233 (292)
3 1ex7_A Guanylate kinase; subst 100.0 1.9E-30 6.5E-35 232.2 13.8 136 105-357 2-139 (186)
4 3tsz_A Tight junction protein 100.0 1.5E-29 5.2E-34 250.6 17.4 200 1-354 22-332 (391)
5 3shw_A Tight junction protein 100.0 1.1E-29 3.7E-34 255.7 16.1 200 1-354 14-324 (468)
6 1kjw_A Postsynaptic density pr 100.0 1E-28 3.5E-33 236.1 13.0 150 83-355 86-237 (295)
7 3exa_A TRNA delta(2)-isopenten 99.9 9.1E-30 3.1E-34 243.6 -3.5 195 104-356 3-214 (322)
8 3foz_A TRNA delta(2)-isopenten 99.9 4.8E-30 1.6E-34 245.2 -7.5 197 102-356 8-220 (316)
9 3eph_A TRNA isopentenyltransfe 99.9 1.3E-27 4.4E-32 235.9 0.0 193 105-356 3-211 (409)
10 3ney_A 55 kDa erythrocyte memb 99.9 1.1E-23 3.9E-28 189.7 14.0 127 101-344 16-143 (197)
11 3crm_A TRNA delta(2)-isopenten 99.9 5.5E-26 1.9E-30 219.1 -3.4 196 103-356 4-226 (323)
12 3tau_A Guanylate kinase, GMP k 99.8 1.8E-20 6E-25 169.5 10.6 136 103-355 7-143 (208)
13 3a00_A Guanylate kinase, GMP k 99.8 4.3E-20 1.5E-24 163.9 11.1 136 104-356 1-138 (186)
14 2qor_A Guanylate kinase; phosp 99.8 2E-19 6.9E-24 161.7 15.3 136 103-355 11-149 (204)
15 3d3q_A TRNA delta(2)-isopenten 99.8 4E-22 1.4E-26 193.3 -3.4 194 103-356 6-220 (340)
16 1kgd_A CASK, peripheral plasma 99.8 1.7E-19 5.7E-24 159.4 10.1 131 102-349 3-134 (180)
17 1s96_A Guanylate kinase, GMP k 99.7 5.9E-17 2E-21 148.1 13.2 136 103-355 15-152 (219)
18 1lvg_A Guanylate kinase, GMP k 99.7 2.2E-16 7.7E-21 141.6 14.7 135 104-355 4-139 (198)
19 3a8t_A Adenylate isopentenyltr 99.7 1.3E-17 4.3E-22 161.3 1.5 100 103-249 39-148 (339)
20 3tr0_A Guanylate kinase, GMP k 99.6 2.1E-14 7.2E-19 127.8 14.5 136 104-356 7-142 (205)
21 3kfv_A Tight junction protein 99.6 3.5E-15 1.2E-19 142.4 9.0 56 299-354 186-241 (308)
22 3lnc_A Guanylate kinase, GMP k 99.5 9.9E-15 3.4E-19 133.3 9.6 136 103-355 26-163 (231)
23 2j41_A Guanylate kinase; GMP, 99.4 1.2E-12 4.1E-17 116.4 12.5 136 103-355 5-141 (207)
24 1z6g_A Guanylate kinase; struc 99.4 5.7E-12 1.9E-16 114.5 15.0 137 103-356 22-161 (218)
25 4dey_A Voltage-dependent L-typ 99.4 1.1E-13 3.7E-18 133.0 2.9 56 300-355 218-274 (337)
26 3gge_A PDZ domain-containing p 99.2 3.4E-11 1.2E-15 95.3 7.6 61 1-61 19-80 (95)
27 2xkx_A Disks large homolog 4; 99.2 1.3E-10 4.4E-15 123.3 14.1 56 9-64 184-239 (721)
28 1r6j_A Syntenin 1; PDZ, membra 99.0 3.5E-10 1.2E-14 87.2 6.6 52 12-64 26-77 (82)
29 3e17_A Tight junction protein 99.0 1.8E-09 6E-14 84.1 9.1 57 9-65 21-77 (88)
30 1znw_A Guanylate kinase, GMP k 99.0 5.5E-09 1.9E-13 93.5 13.6 81 101-181 17-99 (207)
31 3o46_A Maguk P55 subfamily mem 99.0 1.5E-09 5.3E-14 85.0 8.3 64 1-64 18-83 (93)
32 1kwa_A Hcask/LIN-2 protein; PD 98.9 1.9E-09 6.4E-14 83.9 6.8 64 1-64 16-80 (88)
33 1g9o_A NHE-RF; PDZ domain, com 98.9 7.4E-09 2.5E-13 80.6 9.1 63 1-64 17-81 (91)
34 3cbz_A Dishevelled-2; PDZ doma 98.9 6.6E-09 2.3E-13 83.9 9.1 64 1-64 20-91 (108)
35 3b76_A E3 ubiquitin-protein li 98.9 6.9E-09 2.3E-13 85.4 8.6 56 9-64 53-108 (118)
36 2la8_A Inactivation-NO-after-p 98.9 5.3E-09 1.8E-13 84.4 7.6 64 1-64 17-80 (106)
37 2ejy_A 55 kDa erythrocyte memb 98.9 3.7E-09 1.3E-13 84.1 6.6 64 1-64 27-91 (97)
38 2qkv_A Inactivation-NO-after-p 98.8 5.9E-09 2E-13 82.3 7.6 64 1-64 23-86 (96)
39 2e7k_A Maguk P55 subfamily mem 98.8 7.8E-09 2.7E-13 80.9 8.0 63 1-64 21-83 (91)
40 3r68_A Na(+)/H(+) exchange reg 98.8 5.9E-09 2E-13 81.7 7.2 63 1-64 19-83 (95)
41 2ze6_A Isopentenyl transferase 98.8 2E-10 6.9E-15 106.7 -2.0 56 105-160 2-66 (253)
42 3egg_C Spinophilin; PP1, serin 98.8 7.9E-09 2.7E-13 90.5 8.3 56 9-64 111-166 (170)
43 2iwo_A Multiple PDZ domain pro 98.8 1.2E-08 3.9E-13 84.2 7.8 56 9-64 53-108 (120)
44 3l4f_D SH3 and multiple ankyri 98.8 1.6E-08 5.3E-13 84.8 8.6 54 10-64 66-119 (132)
45 1wf8_A Neurabin-I; PDZ domain, 98.8 1.3E-08 4.5E-13 81.8 7.8 57 8-64 39-95 (107)
46 4amh_A Disks large homolog 1; 98.8 2.2E-08 7.5E-13 80.5 9.1 56 9-64 32-87 (106)
47 2he4_A Na(+)/H(+) exchange reg 98.8 2E-08 6.8E-13 78.0 8.5 63 1-64 18-82 (90)
48 1ujd_A KIAA0559 protein; PDZ d 98.8 1.4E-08 4.9E-13 83.1 8.0 55 10-64 50-104 (117)
49 2dc2_A GOPC, golgi associated 98.8 1.6E-08 5.3E-13 81.0 7.9 63 1-64 24-90 (103)
50 2byg_A Channel associated prot 98.8 2.3E-08 7.8E-13 82.0 9.1 56 9-64 54-109 (117)
51 2qg1_A Multiple PDZ domain pro 98.8 1.5E-08 5.2E-13 78.9 7.6 64 1-64 19-84 (92)
52 2d92_A INAD-like protein; PDZ 98.8 1E-08 3.5E-13 82.7 6.8 57 8-64 43-100 (108)
53 1va8_A Maguk P55 subfamily mem 98.8 1.7E-08 5.8E-13 82.1 8.1 64 1-64 40-103 (113)
54 2fne_A Multiple PDZ domain pro 98.8 1.8E-08 6.1E-13 82.7 8.2 56 9-64 53-108 (117)
55 2awx_A Synapse associated prot 98.8 2.2E-08 7.6E-13 80.2 8.6 56 9-64 33-88 (105)
56 1v62_A KIAA1719 protein; struc 98.8 2.5E-08 8.6E-13 81.7 8.8 64 1-64 30-97 (117)
57 4e34_A Golgi-associated PDZ an 98.8 1.6E-08 5.5E-13 78.0 7.3 55 9-64 28-83 (87)
58 2opg_A Multiple PDZ domain pro 98.8 3.3E-08 1.1E-12 77.9 9.1 64 1-64 18-85 (98)
59 2pa1_A PDZ and LIM domain prot 98.8 3.4E-08 1.2E-12 76.1 9.0 63 1-64 15-80 (87)
60 2g5m_B Neurabin-2; spinophilin 98.8 1.8E-08 6.2E-13 81.7 7.7 57 8-64 34-90 (113)
61 2jil_A GRIP1 protein, glutamat 98.8 2.7E-08 9.4E-13 78.2 8.5 64 1-64 17-87 (97)
62 3axa_A Afadin, nectin-3, prote 98.8 2.7E-08 9.1E-13 79.8 8.6 57 8-64 37-93 (106)
63 1n7e_A AMPA receptor interacti 98.8 2.3E-08 7.7E-13 78.9 8.0 64 1-64 19-85 (97)
64 1qav_A Alpha-1 syntrophin (res 98.7 2.9E-08 9.9E-13 77.1 8.5 64 1-64 19-85 (90)
65 3i4w_A Disks large homolog 4; 98.7 2.7E-08 9.3E-13 79.2 8.4 64 1-64 25-90 (104)
66 1i16_A Interleukin 16, LCF; cy 98.7 1.1E-08 3.9E-13 85.3 6.4 64 1-64 43-113 (130)
67 1nf3_C PAR-6B; semi-CRIB motif 98.7 2.5E-08 8.4E-13 83.0 8.2 56 9-64 65-120 (128)
68 2vwr_A Ligand of NUMB protein 98.7 3.8E-08 1.3E-12 77.2 8.8 64 1-64 19-84 (95)
69 1q3o_A Shank1; PDZ, GKAP, pept 98.7 3.5E-08 1.2E-12 79.5 8.7 54 10-64 46-99 (109)
70 1wg6_A Hypothetical protein (r 98.7 1.3E-08 4.5E-13 84.6 6.3 56 9-64 55-117 (127)
71 2i1n_A Discs, large homolog 3; 98.7 3.9E-08 1.3E-12 78.2 8.7 57 8-64 33-89 (102)
72 1wi4_A Synip, syntaxin binding 98.7 1.6E-08 5.4E-13 81.9 6.5 58 1-58 28-90 (109)
73 2yt7_A Amyloid beta A4 precurs 98.7 3.7E-08 1.3E-12 78.4 8.6 64 1-64 24-94 (101)
74 2jik_A Synaptojanin-2 binding 98.7 4E-08 1.4E-12 77.9 8.7 56 9-64 37-92 (101)
75 2jxo_A Ezrin-radixin-moesin-bi 98.7 4.3E-08 1.5E-12 77.3 8.5 63 1-64 23-87 (98)
76 1d5g_A Human phosphatase HPTP1 98.7 3.9E-08 1.3E-12 77.2 8.2 56 9-64 33-88 (96)
77 2i04_A Membrane-associated gua 98.7 5.5E-08 1.9E-12 74.6 8.9 63 1-63 14-81 (85)
78 2fcf_A Multiple PDZ domain pro 98.7 5E-08 1.7E-12 77.6 8.9 56 9-64 39-94 (103)
79 2v90_A PDZ domain-containing p 98.7 4.5E-08 1.5E-12 76.9 8.5 63 1-64 17-84 (96)
80 3hpk_A Protein interacting wit 98.7 4.5E-08 1.5E-12 80.9 8.7 56 9-64 45-100 (125)
81 2fe5_A Presynaptic protein SAP 98.7 5.4E-08 1.8E-12 76.0 8.6 56 9-64 33-88 (94)
82 1uhp_A Hypothetical protein KI 98.7 4.1E-08 1.4E-12 78.9 8.0 57 8-64 40-96 (107)
83 2q3g_A PDZ and LIM domain prot 98.7 5E-08 1.7E-12 75.5 8.2 63 1-64 16-81 (89)
84 2dkr_A LIN-7 homolog B; LIN-7B 98.7 4.1E-08 1.4E-12 76.6 7.4 64 1-64 19-85 (93)
85 3qik_A Phosphatidylinositol 3, 98.7 7.3E-08 2.5E-12 76.9 8.9 63 1-64 31-96 (101)
86 2r4h_A Membrane-associated gua 98.7 7.8E-08 2.7E-12 78.0 9.3 64 1-64 38-104 (112)
87 2ego_A General receptor for ph 98.7 6.3E-08 2.2E-12 76.2 8.5 55 9-64 37-91 (96)
88 2koj_A Partitioning defective 98.7 6.6E-08 2.2E-12 78.0 8.8 64 1-64 25-96 (111)
89 2q9v_A Membrane-associated gua 98.7 3.2E-08 1.1E-12 76.7 6.6 64 1-64 16-84 (90)
90 1uep_A Membrane associated gua 98.7 2.2E-08 7.5E-13 80.0 5.7 64 1-64 23-91 (103)
91 2ehr_A INAD-like protein; PDZ 98.7 5E-08 1.7E-12 79.6 7.9 56 9-64 50-105 (117)
92 2f5y_A Regulator of G-protein 98.7 5.3E-08 1.8E-12 75.9 7.7 62 1-64 17-78 (91)
93 1wfg_A Regulating synaptic mem 98.7 6.8E-08 2.3E-12 80.8 8.7 55 10-64 66-122 (131)
94 2z17_A Pleckstrin homology SEC 98.7 5E-08 1.7E-12 78.0 7.5 55 9-64 48-102 (104)
95 1m5z_A GRIP, AMPA receptor int 98.7 9.2E-08 3.1E-12 74.3 8.8 63 1-64 22-86 (91)
96 2pkt_A PDZ and LIM domain prot 98.7 9.1E-08 3.1E-12 74.4 8.7 63 1-64 16-81 (91)
97 2uzc_A Human pdlim5, PDZ and L 98.6 9.6E-08 3.3E-12 73.7 8.7 63 1-64 16-81 (88)
98 1um1_A KIAA1849 protein, RSGI 98.6 6.9E-08 2.4E-12 77.8 8.2 57 8-64 35-91 (110)
99 2eno_A Synaptojanin-2-binding 98.6 5.9E-08 2E-12 79.6 7.8 57 8-64 46-102 (120)
100 1wha_A KIAA0147 protein, scrib 98.6 4.1E-08 1.4E-12 78.6 6.7 56 9-64 38-93 (105)
101 3sfj_A TAX1-binding protein 3; 98.6 6.7E-08 2.3E-12 77.0 7.9 55 8-63 44-99 (104)
102 2dmz_A INAD-like protein; PDZ 98.6 6.5E-08 2.2E-12 80.3 8.1 57 8-64 45-101 (129)
103 2iwq_A Multiple PDZ domain pro 98.6 8.8E-08 3E-12 79.2 8.8 56 9-64 59-114 (123)
104 1ihj_A INAD; intermolecular di 98.6 8.4E-08 2.9E-12 75.6 8.1 55 10-64 38-92 (98)
105 2w4f_A Protein LAP4; structura 98.6 9.6E-08 3.3E-12 75.0 8.4 56 8-64 33-88 (97)
106 1ufx_A KIAA1526 protein; PDZ d 98.6 4.3E-08 1.5E-12 78.5 6.5 47 11-57 34-80 (103)
107 1mfg_A ERB-B2 interacting prot 98.6 1.2E-07 4.1E-12 74.3 8.7 54 9-64 35-88 (95)
108 2iwn_A Multiple PDZ domain pro 98.6 9.6E-08 3.3E-12 74.8 8.1 57 8-64 32-88 (97)
109 3nfk_A Tyrosine-protein phosph 98.6 9.7E-08 3.3E-12 76.5 8.3 56 9-64 43-103 (107)
110 2daz_A INAD-like protein; PDZ 98.6 5.8E-08 2E-12 80.2 7.1 56 9-64 51-106 (124)
111 3qe1_A Sorting nexin-27, G pro 98.6 9.9E-08 3.4E-12 76.4 8.2 53 11-64 45-97 (107)
112 2jre_A C60-1 PDZ domain peptid 98.6 5.1E-08 1.7E-12 78.3 6.4 56 9-64 44-99 (108)
113 2db5_A INAD-like protein; PDZ 98.6 5.9E-08 2E-12 80.5 7.0 55 10-64 55-110 (128)
114 3khf_A Microtubule-associated 98.6 9.7E-08 3.3E-12 75.4 7.9 54 10-64 35-88 (99)
115 3ngh_A PDZ domain-containing p 98.6 6.3E-08 2.1E-12 77.5 6.9 63 1-64 16-80 (106)
116 1q7x_A PDZ2B domain of PTP-BAS 98.6 2.8E-08 9.6E-13 79.9 4.8 57 8-64 41-97 (108)
117 2djt_A Unnamed protein product 98.6 7.8E-08 2.7E-12 76.6 7.4 57 8-64 37-93 (104)
118 2o2t_A Multiple PDZ domain pro 98.6 4.6E-08 1.6E-12 79.8 6.1 56 9-64 49-105 (117)
119 2dlu_A INAD-like protein; PDZ 98.6 4.5E-08 1.5E-12 79.1 5.9 64 1-64 29-93 (111)
120 2d90_A PDZ domain containing p 98.6 7.9E-08 2.7E-12 76.4 7.3 63 1-64 20-84 (102)
121 1x6d_A Interleukin-16; PDZ dom 98.6 4.8E-08 1.7E-12 80.0 6.1 64 1-64 30-97 (119)
122 1rgw_A ZAsp protein; PDZ, cyph 98.6 5.9E-08 2E-12 74.3 6.2 55 9-64 25-79 (85)
123 1n7t_A 99-MER peptide of densi 98.6 8E-08 2.8E-12 76.5 7.2 55 8-64 42-96 (103)
124 2gzv_A PRKCA-binding protein; 98.6 1.4E-07 4.9E-12 76.8 8.8 64 1-64 39-105 (114)
125 2rcz_A Tight junction protein 98.6 1.5E-07 5.2E-12 71.0 8.3 56 9-64 21-76 (81)
126 2eaq_A LIM domain only protein 98.6 1.1E-07 3.9E-12 73.6 7.7 63 1-64 20-84 (90)
127 1wi2_A Riken cDNA 2700099C19; 98.6 1E-07 3.4E-12 76.2 7.5 62 1-64 30-94 (104)
128 1tp5_A Presynaptic density pro 98.6 1.3E-07 4.3E-12 77.4 8.2 64 1-64 28-93 (119)
129 2kv8_A RGS12, regulator of G-p 98.6 3E-08 1E-12 75.7 4.1 55 9-64 23-77 (83)
130 2eeh_A PDZ domain-containing p 98.6 1.7E-07 5.7E-12 74.3 8.4 62 1-64 25-89 (100)
131 1y7n_A Amyloid beta A4 precurs 98.6 1.3E-07 4.4E-12 73.9 7.6 52 12-64 34-85 (90)
132 2kpk_A Membrane-associated gua 98.6 9.7E-08 3.3E-12 79.5 7.2 56 9-64 43-100 (129)
133 1wfv_A Membrane associated gua 98.6 4.5E-08 1.5E-12 77.8 4.9 64 1-64 25-91 (103)
134 1v6b_A Harmonin isoform A1; st 98.6 6.7E-08 2.3E-12 79.3 6.1 56 9-64 43-102 (118)
135 3kzd_A TIAM-1, T-lymphoma inva 98.6 1.4E-07 4.7E-12 74.5 7.6 56 1-57 23-82 (94)
136 1wif_A RSGI RUH-020, riken cDN 98.6 8.4E-08 2.9E-12 79.9 6.6 64 1-64 41-106 (126)
137 2vsp_A PDZ domain-containing p 98.6 3.7E-08 1.3E-12 76.7 4.1 55 9-64 27-81 (91)
138 3cyy_A Tight junction protein 98.6 2.2E-07 7.7E-12 72.1 8.6 56 9-64 23-78 (92)
139 1x5q_A LAP4 protein; PDZ domai 98.6 2.2E-07 7.5E-12 74.8 8.7 56 8-64 45-100 (110)
140 2kom_A Partitioning defective 98.6 1.7E-07 6E-12 77.1 8.3 56 9-64 58-115 (121)
141 2dm8_A INAD-like protein; PDZ 98.6 5.3E-08 1.8E-12 79.2 5.0 56 9-64 43-98 (116)
142 3r0h_A INAD, inactivation-NO-a 98.5 1.3E-07 4.3E-12 84.4 7.7 64 1-64 128-191 (206)
143 2vsv_A Rhophilin-2; scaffold p 98.5 2.2E-07 7.4E-12 75.4 8.3 56 8-64 43-99 (109)
144 1ueq_A Membrane associated gua 98.5 1.9E-07 6.4E-12 77.0 8.1 64 1-64 33-101 (123)
145 2cs5_A Tyrosine-protein phosph 98.5 8.8E-08 3E-12 78.4 6.0 63 1-64 30-101 (119)
146 3tsv_A Tight junction protein 98.5 2.2E-07 7.7E-12 76.9 8.4 63 1-64 42-107 (124)
147 1uju_A Scribble; PDZ domain, c 98.5 5.6E-08 1.9E-12 78.6 4.5 56 9-64 44-99 (111)
148 2dls_A PDZ-rhogef, RHO guanine 98.5 2.5E-07 8.7E-12 72.3 7.8 61 1-64 22-82 (93)
149 3soe_A Membrane-associated gua 98.5 4.8E-07 1.6E-11 73.8 9.4 61 1-64 26-88 (113)
150 2h2b_A Tight junction protein 98.5 5.7E-07 1.9E-11 71.9 9.5 54 9-64 39-92 (107)
151 1vb7_A PDZ and LIM domain 2; P 98.5 1.8E-07 6.3E-12 73.2 6.4 55 9-64 30-84 (94)
152 2eei_A PDZ domain-containing p 98.5 7.6E-08 2.6E-12 77.0 4.2 63 1-64 22-86 (106)
153 2kjd_A Sodium/hydrogen exchang 98.5 4.2E-07 1.4E-11 75.1 8.9 63 1-64 23-87 (128)
154 3k1r_A Harmonin; protein-prote 98.5 2.6E-07 8.7E-12 82.1 8.0 62 1-64 99-163 (192)
155 2edz_A PDZ domain-containing p 98.5 1.5E-07 5E-12 76.5 5.8 56 8-64 37-92 (114)
156 1uit_A Human discs large 5 pro 98.5 3.1E-07 1E-11 74.9 7.8 63 1-64 33-96 (117)
157 1whd_A RGS3, regulator of G-pr 98.5 8.1E-08 2.8E-12 76.2 3.8 55 9-64 36-90 (100)
158 1qau_A Neuronal nitric oxide s 98.5 4.7E-07 1.6E-11 73.1 8.0 64 1-64 16-82 (112)
159 1uez_A KIAA1526 protein; PDZ d 98.4 4.8E-07 1.6E-11 71.7 7.8 62 1-64 24-88 (101)
160 2csj_A TJP2 protein; PDZ domai 98.4 2.4E-07 8.2E-12 75.6 6.1 54 9-64 46-99 (117)
161 2qbw_A PDZ-fibronectin fusion 98.4 5.4E-07 1.9E-11 79.6 8.9 55 8-64 23-77 (195)
162 1v5l_A PDZ and LIM domain 3; a 98.4 1.9E-07 6.6E-12 74.4 5.4 63 1-64 18-83 (103)
163 2eeg_A PDZ and LIM domain prot 98.4 3.1E-07 1.1E-11 71.9 6.4 55 9-64 32-86 (94)
164 1z87_A Alpha-1-syntrophin; pro 98.4 2.4E-07 8.3E-12 86.5 6.6 64 1-64 92-158 (263)
165 1wf7_A Enigma homologue protei 98.4 3.8E-07 1.3E-11 72.6 6.9 63 1-64 18-83 (103)
166 3bpu_A Membrane-associated gua 98.4 8.8E-07 3E-11 68.2 8.7 61 1-64 17-81 (88)
167 1ujv_A Membrane associated gua 98.4 1.1E-06 3.9E-11 69.1 9.2 61 1-64 24-86 (96)
168 3gsl_A Disks large homolog 4; 98.4 7.1E-07 2.4E-11 78.4 8.6 56 9-64 35-90 (196)
169 2vz5_A TAX1-binding protein 3; 98.4 8.4E-07 2.9E-11 74.9 8.5 56 8-64 63-119 (139)
170 1uf1_A KIAA1526 protein; PDZ d 98.4 7.7E-07 2.6E-11 73.7 8.1 54 9-64 46-99 (128)
171 1v5q_A GRIP1 homolog, glutamat 98.4 5.8E-07 2E-11 73.9 7.2 56 9-64 45-102 (122)
172 1um7_A Synapse-associated prot 98.4 1.7E-07 5.8E-12 75.7 3.6 56 9-64 39-94 (113)
173 2lob_A Golgi-associated PDZ an 97.7 4.3E-08 1.5E-12 79.8 0.0 55 9-64 53-108 (112)
174 1w9e_A Syntenin 1; cell adhesi 98.4 1.2E-06 4.2E-11 75.7 9.1 63 1-64 19-82 (166)
175 2yuy_A RHO GTPase activating p 98.4 1.9E-07 6.3E-12 77.4 3.6 55 9-64 61-115 (126)
176 2edp_A Fragment, shroom family 98.4 4.5E-07 1.6E-11 71.9 5.7 62 1-64 24-89 (100)
177 2edv_A FERM and PDZ domain-con 98.3 1.8E-07 6.3E-12 73.6 3.0 55 8-64 30-84 (96)
178 1uew_A Membrane associated gua 98.3 7.4E-07 2.5E-11 72.3 6.4 54 10-64 44-98 (114)
179 3gsl_A Disks large homolog 4; 98.3 8E-07 2.7E-11 78.1 7.0 56 9-64 130-185 (196)
180 1b8q_A Protein (neuronal nitri 98.3 5.6E-07 1.9E-11 74.4 5.5 64 1-64 23-89 (127)
181 2d8i_A T-cell lymphoma invasio 98.3 7.1E-07 2.4E-11 72.8 5.9 53 9-64 44-96 (114)
182 1x5n_A Harmonin; PDZ domain, u 98.3 1.4E-06 4.9E-11 70.4 7.4 62 1-64 30-94 (114)
183 1vae_A Rhophilin 2, rhophilin, 98.3 5E-07 1.7E-11 73.3 4.5 56 8-64 35-91 (111)
184 3r0h_A INAD, inactivation-NO-a 98.3 2.3E-06 7.8E-11 76.2 8.4 56 9-64 45-103 (206)
185 3tvt_A Disks large 1 tumor sup 98.2 1.5E-07 5.1E-12 89.3 -0.3 111 240-354 4-121 (292)
186 2qt5_A Glutamate receptor-inte 98.2 3.2E-06 1.1E-10 75.1 7.8 64 1-64 22-88 (200)
187 1wh1_A KIAA1095 protein; PDZ d 98.2 3.1E-06 1E-10 69.7 6.8 62 1-64 35-102 (124)
188 2qt5_A Glutamate receptor-inte 98.1 6.3E-06 2.1E-10 73.1 8.8 56 9-64 135-190 (200)
189 2yub_A LIMK-2, LIM domain kina 98.1 5.1E-06 1.7E-10 68.1 7.1 55 9-64 44-100 (118)
190 1gvn_B Zeta; postsegregational 98.1 2E-06 6.8E-11 81.1 5.2 42 102-143 31-73 (287)
191 1p1d_A PDZ45, glutamate recept 98.1 4.7E-06 1.6E-10 73.9 7.3 57 8-64 134-190 (196)
192 2krg_A Na(+)/H(+) exchange reg 98.1 1.5E-06 5.2E-11 78.8 4.1 63 1-64 23-88 (216)
193 1p1d_A PDZ45, glutamate recept 98.1 5.7E-06 2E-10 73.3 7.8 56 9-64 36-93 (196)
194 3tlx_A Adenylate kinase 2; str 97.9 2.5E-06 8.5E-11 78.3 1.9 39 103-141 28-66 (243)
195 3suz_A Amyloid beta A4 precurs 97.8 4.2E-06 1.5E-10 82.3 1.7 55 10-64 233-289 (388)
196 2pzd_A Serine protease HTRA2; 97.8 4.5E-05 1.5E-09 61.4 7.2 53 8-64 34-86 (113)
197 1fc6_A Photosystem II D1 prote 97.8 4.8E-05 1.6E-09 74.7 8.8 60 1-61 88-150 (388)
198 1qhx_A CPT, protein (chloramph 97.7 6.6E-05 2.2E-09 64.4 7.9 26 104-129 3-28 (178)
199 2kl1_A YLBL protein; structure 97.6 4.3E-05 1.5E-09 59.7 4.3 53 8-64 4-58 (94)
200 3i18_A LMO2051 protein; alpha- 97.6 0.00012 4.1E-09 57.7 6.8 54 7-64 5-60 (100)
201 2kjp_A Uncharacterized protein 97.6 2.1E-05 7.3E-10 61.2 2.2 51 10-64 2-54 (91)
202 1ly1_A Polynucleotide kinase; 97.5 6E-05 2.1E-09 64.5 4.6 23 104-126 2-24 (181)
203 3suz_A Amyloid beta A4 precurs 97.5 1.3E-05 4.5E-10 78.8 0.0 52 12-64 318-369 (388)
204 2p3w_A Probable serine proteas 97.5 0.00016 5.5E-09 58.0 6.5 53 8-64 34-86 (112)
205 2l97_A HTRA, putative serine p 97.5 0.00018 6.3E-09 59.9 6.9 53 8-64 56-110 (134)
206 1w9e_A Syntenin 1; cell adhesi 97.5 0.00025 8.4E-09 61.0 7.5 51 12-63 110-160 (166)
207 3id1_A Regulator of sigma E pr 97.5 0.00017 5.7E-09 56.4 5.7 50 12-64 5-56 (95)
208 3dl0_A Adenylate kinase; phosp 97.5 3E-05 1E-09 69.0 1.5 29 107-135 3-31 (216)
209 3fb4_A Adenylate kinase; psych 97.4 3.8E-05 1.3E-09 68.3 1.6 23 107-129 3-25 (216)
210 3t61_A Gluconokinase; PSI-biol 97.4 0.00063 2.1E-08 59.7 9.4 26 103-128 17-42 (202)
211 1qf9_A UMP/CMP kinase, protein 97.4 7.4E-05 2.5E-09 64.5 3.1 27 103-129 5-31 (194)
212 2zpm_A Regulator of sigma E pr 97.4 0.00016 5.4E-09 55.6 4.5 51 11-64 6-57 (91)
213 2c95_A Adenylate kinase 1; tra 97.4 7.7E-05 2.6E-09 64.8 3.0 26 103-128 8-33 (196)
214 3kb2_A SPBC2 prophage-derived 97.4 0.00014 4.9E-09 61.6 4.6 25 105-129 2-26 (173)
215 4a8c_A Periplasmic PH-dependen 97.3 0.00034 1.2E-08 69.7 7.8 53 9-64 363-415 (436)
216 4dey_A Voltage-dependent L-typ 97.3 1E-05 3.5E-10 77.6 -3.2 53 239-291 36-88 (337)
217 3kfv_A Tight junction protein 97.3 1.3E-05 4.6E-10 76.2 -2.5 46 239-291 2-56 (308)
218 3tsz_A Tight junction protein 97.3 7.8E-06 2.7E-10 80.5 -4.4 101 184-291 44-152 (391)
219 4fgm_A Aminopeptidase N family 97.3 0.00026 9E-09 73.3 6.8 60 1-64 488-549 (597)
220 3umf_A Adenylate kinase; rossm 97.3 7.2E-05 2.5E-09 67.7 2.2 29 101-129 26-54 (217)
221 3rle_A Golgi reassembly-stacki 97.3 0.00035 1.2E-08 62.6 6.7 54 9-64 16-71 (209)
222 2rhm_A Putative kinase; P-loop 97.3 0.00013 4.4E-09 63.2 3.7 26 103-128 4-29 (193)
223 2i6v_A General secretion pathw 97.3 0.00029 1E-08 53.9 5.3 52 10-64 20-73 (87)
224 4eaq_A DTMP kinase, thymidylat 97.3 8.5E-05 2.9E-09 67.5 2.5 39 103-143 25-63 (229)
225 3zvl_A Bifunctional polynucleo 97.3 0.0004 1.4E-08 68.6 7.5 26 103-128 257-282 (416)
226 2xb4_A Adenylate kinase; ATP-b 97.3 0.00013 4.5E-09 65.6 3.3 51 303-354 67-127 (223)
227 1nn5_A Similar to deoxythymidy 97.2 0.00049 1.7E-08 60.6 6.8 26 103-128 8-33 (215)
228 2z0h_A DTMP kinase, thymidylat 97.1 5.1E-05 1.8E-09 66.0 -1.0 23 106-128 2-24 (197)
229 2cdn_A Adenylate kinase; phosp 97.1 0.00074 2.5E-08 59.2 6.4 26 103-128 19-44 (201)
230 1ltq_A Polynucleotide kinase; 97.1 0.00034 1.2E-08 65.3 4.4 24 104-127 2-25 (301)
231 2hga_A Conserved protein MTH13 97.1 0.0014 4.9E-08 53.9 7.4 54 7-64 23-78 (125)
232 1ukz_A Uridylate kinase; trans 97.1 0.00042 1.4E-08 60.8 4.4 27 103-129 14-40 (203)
233 2i4s_A General secretion pathw 97.1 0.0013 4.4E-08 52.1 6.9 52 10-64 38-91 (105)
234 1te0_A Protease DEGS; two doma 97.0 0.0018 6.1E-08 61.6 9.0 53 9-64 244-298 (318)
235 3shw_A Tight junction protein 97.0 1.7E-05 5.8E-10 79.7 -5.8 102 183-291 35-144 (468)
236 1y8t_A Hypothetical protein RV 97.0 0.0014 4.7E-08 62.4 7.7 61 1-64 232-296 (324)
237 3v9p_A DTMP kinase, thymidylat 97.0 2.8E-05 9.7E-10 70.9 -4.1 40 103-143 24-67 (227)
238 3stj_A Protease DEGQ; serine p 96.9 0.0014 4.8E-08 63.2 7.1 53 9-64 263-317 (345)
239 3k50_A Putative S41 protease; 96.9 0.00057 2E-08 67.4 4.3 50 10-63 91-140 (403)
240 3pv2_A DEGQ; trypsin fold, PDZ 96.9 0.001 3.5E-08 66.5 6.0 53 9-64 386-438 (451)
241 3sr0_A Adenylate kinase; phosp 96.9 0.001 3.5E-08 59.5 5.3 24 106-129 2-25 (206)
242 3pv2_A DEGQ; trypsin fold, PDZ 96.8 0.0016 5.3E-08 65.2 6.6 53 9-64 282-336 (451)
243 1lcy_A HTRA2 serine protease; 96.8 0.0021 7.1E-08 61.4 7.3 52 9-64 256-307 (325)
244 3rle_A Golgi reassembly-stacki 96.8 0.00082 2.8E-08 60.1 4.0 52 9-64 112-165 (209)
245 4a8c_A Periplasmic PH-dependen 96.8 0.0015 5.1E-08 65.0 6.4 53 9-64 263-317 (436)
246 3be4_A Adenylate kinase; malar 96.7 0.007 2.4E-07 53.8 9.8 24 105-128 6-29 (217)
247 2qmh_A HPR kinase/phosphorylas 96.7 0.00049 1.7E-08 61.5 2.0 64 103-173 33-112 (205)
248 3qo6_A Protease DO-like 1, chl 96.7 0.0017 5.8E-08 62.6 5.6 53 9-64 251-316 (348)
249 1e4v_A Adenylate kinase; trans 96.4 0.0008 2.7E-08 59.7 1.2 22 107-128 3-24 (214)
250 1k32_A Tricorn protease; prote 96.4 0.0066 2.2E-07 66.2 8.6 61 1-64 740-809 (1045)
251 1np6_A Molybdopterin-guanine d 96.2 0.0014 4.9E-08 57.0 1.5 44 104-147 6-49 (174)
252 1kag_A SKI, shikimate kinase I 96.1 0.0037 1.3E-07 53.0 3.6 26 103-128 3-28 (173)
253 3trf_A Shikimate kinase, SK; a 96.0 0.0033 1.1E-07 53.9 2.9 25 104-128 5-29 (185)
254 1ky9_A Protease DO, DEGP, HTRA 95.9 0.0012 4.2E-08 65.9 0.0 53 9-64 383-435 (448)
255 1zp6_A Hypothetical protein AT 95.9 0.0034 1.2E-07 54.1 2.8 26 103-128 8-33 (191)
256 2wwf_A Thymidilate kinase, put 95.9 0.0022 7.5E-08 56.2 1.5 40 103-143 9-48 (212)
257 1nks_A Adenylate kinase; therm 95.9 0.0023 7.9E-08 54.9 1.7 25 105-129 2-26 (194)
258 3iij_A Coilin-interacting nucl 95.9 0.0047 1.6E-07 52.9 3.6 26 103-128 10-35 (180)
259 3num_A Serine protease HTRA1; 95.9 0.0014 4.7E-08 62.8 0.0 53 8-64 253-305 (332)
260 3lw7_A Adenylate kinase relate 95.8 0.0046 1.6E-07 51.8 3.0 23 105-128 2-24 (179)
261 1zak_A Adenylate kinase; ATP:A 95.7 0.0027 9.2E-08 56.5 1.0 33 103-135 4-36 (222)
262 2vli_A Antibiotic resistance p 95.6 0.0045 1.5E-07 52.9 2.3 27 103-129 4-30 (183)
263 1kht_A Adenylate kinase; phosp 95.6 0.0061 2.1E-07 52.2 3.2 25 104-128 3-27 (192)
264 1kjw_A Postsynaptic density pr 95.6 0.00026 8.9E-09 67.0 -6.1 48 241-290 1-48 (295)
265 3vaa_A Shikimate kinase, SK; s 95.6 0.0066 2.3E-07 53.1 3.4 26 103-128 24-49 (199)
266 2iyv_A Shikimate kinase, SK; t 95.6 0.0063 2.2E-07 52.2 3.1 25 104-128 2-26 (184)
267 1xjc_A MOBB protein homolog; s 95.6 0.0047 1.6E-07 53.5 2.2 24 104-127 4-27 (169)
268 2lx7_A GAS-7, growth arrest-sp 95.6 0.0019 6.5E-08 46.2 -0.3 42 240-287 2-43 (60)
269 4eun_A Thermoresistant glucoki 95.5 0.0072 2.5E-07 52.9 3.4 26 103-128 28-53 (200)
270 3uie_A Adenylyl-sulfate kinase 95.5 0.0063 2.2E-07 53.3 3.0 25 103-127 24-48 (200)
271 2bdt_A BH3686; alpha-beta prot 95.5 0.0052 1.8E-07 53.0 2.4 23 105-127 3-25 (189)
272 1e6c_A Shikimate kinase; phosp 95.5 0.0085 2.9E-07 50.6 3.5 25 104-128 2-26 (173)
273 1y63_A LMAJ004144AAA protein; 95.5 0.0086 3E-07 51.7 3.6 25 103-127 9-33 (184)
274 1tev_A UMP-CMP kinase; ploop, 95.4 0.0074 2.5E-07 51.8 2.8 25 104-128 3-27 (196)
275 2v54_A DTMP kinase, thymidylat 95.3 0.012 3.9E-07 51.2 4.0 26 104-129 4-29 (204)
276 3gmt_A Adenylate kinase; ssgci 95.3 0.065 2.2E-06 48.6 9.0 43 312-355 87-133 (230)
277 3c8u_A Fructokinase; YP_612366 95.3 0.0092 3.2E-07 52.6 3.2 26 102-127 20-45 (208)
278 1knq_A Gluconate kinase; ALFA/ 95.3 0.0099 3.4E-07 50.5 3.3 25 104-128 8-32 (175)
279 2qt1_A Nicotinamide riboside k 95.3 0.01 3.6E-07 51.9 3.4 28 101-128 18-45 (207)
280 1via_A Shikimate kinase; struc 95.2 0.0097 3.3E-07 50.7 3.0 24 105-128 5-28 (175)
281 2drm_A Acanthamoeba myosin IB; 95.2 0.0031 1.1E-07 44.1 -0.3 42 239-287 1-42 (58)
282 1ky9_A Protease DO, DEGP, HTRA 95.2 0.0067 2.3E-07 60.5 2.1 53 9-64 286-340 (448)
283 2plr_A DTMP kinase, probable t 95.1 0.01 3.5E-07 51.6 2.9 26 104-129 4-29 (213)
284 2bwj_A Adenylate kinase 5; pho 95.1 0.009 3.1E-07 51.6 2.4 25 104-128 12-36 (199)
285 2bbw_A Adenylate kinase 4, AK4 95.0 0.013 4.6E-07 52.9 3.6 25 104-128 27-51 (246)
286 4edh_A DTMP kinase, thymidylat 95.0 0.0079 2.7E-07 53.9 2.0 39 104-143 6-44 (213)
287 1b07_A Protein (proto-oncogene 95.0 0.0031 1.1E-07 45.6 -0.6 42 239-287 1-42 (65)
288 1cke_A CK, MSSA, protein (cyti 95.0 0.013 4.5E-07 51.8 3.4 25 104-128 5-29 (227)
289 1zd8_A GTP:AMP phosphotransfer 95.0 0.0099 3.4E-07 53.0 2.6 26 104-129 7-32 (227)
290 3cm0_A Adenylate kinase; ATP-b 95.0 0.01 3.5E-07 50.8 2.5 25 104-128 4-28 (186)
291 3ec2_A DNA replication protein 95.0 0.012 4.1E-07 50.3 2.9 25 103-127 37-61 (180)
292 3lv8_A DTMP kinase, thymidylat 95.0 0.0066 2.3E-07 55.4 1.3 41 103-143 26-66 (236)
293 1jjv_A Dephospho-COA kinase; P 94.9 0.012 4.2E-07 51.4 3.0 22 105-126 3-24 (206)
294 2d8j_A FYN-related kinase; SH3 94.9 0.0042 1.4E-07 46.1 -0.1 46 237-289 3-48 (77)
295 2p5t_B PEZT; postsegregational 94.9 0.014 4.7E-07 53.3 3.2 28 102-129 30-57 (253)
296 1uf9_A TT1252 protein; P-loop, 94.8 0.012 4.2E-07 50.9 2.7 25 103-127 7-31 (203)
297 1gtv_A TMK, thymidylate kinase 94.8 0.0037 1.3E-07 54.8 -0.8 24 106-129 2-25 (214)
298 1mky_A Probable GTP-binding pr 94.8 0.015 5E-07 57.6 3.4 53 106-158 182-236 (439)
299 1aky_A Adenylate kinase; ATP:A 94.8 0.016 5.5E-07 51.3 3.3 26 104-129 4-29 (220)
300 3asz_A Uridine kinase; cytidin 94.7 0.013 4.3E-07 51.4 2.4 25 103-127 5-29 (211)
301 2lj0_A Sorbin and SH3 domain-c 94.7 0.0043 1.5E-07 45.0 -0.6 41 240-287 5-45 (65)
302 1jbk_A CLPB protein; beta barr 94.6 0.018 6.2E-07 48.4 3.2 25 103-127 42-66 (195)
303 2yun_A Nostrin; nitric oxide s 94.6 0.0055 1.9E-07 45.8 -0.2 45 236-287 2-46 (79)
304 1uj2_A Uridine-cytidine kinase 94.6 0.017 5.7E-07 52.6 2.9 26 103-128 21-46 (252)
305 4gp7_A Metallophosphoesterase; 94.6 0.016 5.6E-07 49.5 2.7 23 103-125 8-30 (171)
306 2jaq_A Deoxyguanosine kinase; 94.5 0.018 6.2E-07 49.7 2.9 24 106-129 2-25 (205)
307 2csi_A RIM-BP2, RIM binding pr 94.4 0.0073 2.5E-07 44.9 0.1 51 237-287 3-54 (76)
308 3ld9_A DTMP kinase, thymidylat 94.4 0.01 3.4E-07 53.7 1.0 41 103-143 20-61 (223)
309 1ye8_A Protein THEP1, hypothet 94.4 0.021 7.2E-07 49.5 3.0 22 106-127 2-23 (178)
310 3ake_A Cytidylate kinase; CMP 94.4 0.023 8E-07 49.3 3.3 24 105-128 3-26 (208)
311 4fln_A Protease DO-like 2, chl 94.3 0.067 2.3E-06 54.5 7.1 53 9-64 415-467 (539)
312 1wyx_A CRK-associated substrat 94.3 0.0065 2.2E-07 44.1 -0.3 41 240-287 2-45 (69)
313 2w58_A DNAI, primosome compone 94.3 0.023 7.7E-07 49.4 3.1 23 105-127 55-77 (202)
314 1ak2_A Adenylate kinase isoenz 94.3 0.024 8.3E-07 50.8 3.3 26 103-128 15-40 (233)
315 2qz4_A Paraplegin; AAA+, SPG7, 94.3 0.033 1.1E-06 50.1 4.2 26 103-128 38-63 (262)
316 2yvu_A Probable adenylyl-sulfa 94.3 0.026 8.8E-07 48.5 3.3 25 103-127 12-36 (186)
317 2pbr_A DTMP kinase, thymidylat 94.3 0.023 8E-07 48.6 3.0 23 106-128 2-24 (195)
318 3t15_A Ribulose bisphosphate c 94.2 0.028 9.6E-07 52.5 3.8 27 102-128 34-60 (293)
319 2dyk_A GTP-binding protein; GT 94.2 0.031 1E-06 45.9 3.6 22 107-128 4-25 (161)
320 4e22_A Cytidylate kinase; P-lo 94.2 0.026 8.9E-07 51.4 3.4 25 104-128 27-51 (252)
321 3n70_A Transport activator; si 94.2 0.032 1.1E-06 46.2 3.6 25 103-127 23-47 (145)
322 3a4m_A L-seryl-tRNA(SEC) kinas 94.2 0.023 7.7E-07 52.1 2.9 24 104-127 4-27 (260)
323 3bos_A Putative DNA replicatio 94.1 0.027 9.1E-07 49.6 3.2 25 103-127 51-75 (242)
324 2dl4_A Protein STAC; SH3 domai 94.1 0.008 2.7E-07 43.6 -0.2 44 237-287 3-46 (68)
325 1vht_A Dephospho-COA kinase; s 94.1 0.026 9E-07 49.7 3.1 23 104-126 4-26 (218)
326 2if2_A Dephospho-COA kinase; a 94.1 0.022 7.4E-07 49.6 2.5 22 105-126 2-23 (204)
327 2dmo_A Neutrophil cytosol fact 94.1 0.0089 3.1E-07 43.3 -0.0 42 238-286 4-45 (68)
328 2kjq_A DNAA-related protein; s 94.1 0.025 8.4E-07 47.5 2.7 25 103-127 35-59 (149)
329 2p65_A Hypothetical protein PF 94.1 0.022 7.4E-07 48.0 2.4 25 103-127 42-66 (187)
330 2dm1_A Protein VAV-2; RHO fami 94.1 0.009 3.1E-07 43.9 -0.0 44 237-287 3-48 (73)
331 1odf_A YGR205W, hypothetical 3 94.0 0.029 9.9E-07 52.6 3.4 26 102-127 29-54 (290)
332 2ehv_A Hypothetical protein PH 94.0 0.029 9.8E-07 50.0 3.2 23 103-125 29-51 (251)
333 2pez_A Bifunctional 3'-phospho 94.0 0.028 9.5E-07 48.0 2.9 24 104-127 5-28 (179)
334 1rj9_A FTSY, signal recognitio 94.0 0.033 1.1E-06 52.6 3.7 24 103-126 101-124 (304)
335 3tif_A Uncharacterized ABC tra 94.0 0.028 9.7E-07 50.9 3.1 26 102-127 29-54 (235)
336 2pt5_A Shikimate kinase, SK; a 93.9 0.03 1E-06 46.9 3.0 23 106-128 2-24 (168)
337 1rz3_A Hypothetical protein rb 93.9 0.025 8.5E-07 49.5 2.6 25 103-127 21-45 (201)
338 2dl3_A Sorbin and SH3 domain-c 93.9 0.0099 3.4E-07 42.9 -0.0 44 237-287 3-46 (68)
339 3r20_A Cytidylate kinase; stru 93.9 0.028 9.4E-07 51.2 2.9 25 104-128 9-33 (233)
340 1y0m_A 1-phosphatidylinositol- 93.9 0.0071 2.4E-07 42.8 -0.9 41 241-288 3-43 (61)
341 2gj8_A MNME, tRNA modification 93.9 0.037 1.3E-06 46.8 3.6 22 106-127 6-27 (172)
342 3aez_A Pantothenate kinase; tr 93.9 0.031 1.1E-06 52.9 3.3 26 102-127 88-113 (312)
343 1htw_A HI0065; nucleotide-bind 93.9 0.033 1.1E-06 47.3 3.2 26 102-127 31-56 (158)
344 2eqi_A Phospholipase C, gamma 93.9 0.01 3.5E-07 43.0 -0.1 43 238-287 4-46 (69)
345 2cre_A HEF-like protein; SH3 d 93.8 0.01 3.5E-07 43.2 -0.1 44 237-287 3-49 (71)
346 2jeo_A Uridine-cytidine kinase 93.8 0.03 1E-06 50.6 3.0 25 103-127 24-48 (245)
347 2ege_A Uncharacterized protein 93.8 0.011 3.8E-07 43.8 0.1 49 239-287 5-54 (75)
348 1m7g_A Adenylylsulfate kinase; 93.8 0.032 1.1E-06 49.1 3.1 26 102-127 23-48 (211)
349 1x2k_A OSTF1, osteoclast stimu 93.8 0.01 3.6E-07 42.9 -0.1 44 237-287 3-46 (68)
350 2eyu_A Twitching motility prot 93.7 0.031 1.1E-06 51.5 2.9 25 103-127 24-48 (261)
351 2ecz_A Sorbin and SH3 domain-c 93.7 0.0078 2.7E-07 43.8 -0.9 45 237-288 3-47 (70)
352 1lv7_A FTSH; alpha/beta domain 93.7 0.035 1.2E-06 50.2 3.2 25 104-128 45-69 (257)
353 4tmk_A Protein (thymidylate ki 93.7 0.019 6.4E-07 51.4 1.3 39 104-143 3-42 (213)
354 2ct3_A Vinexin; SH3 domian, st 93.7 0.011 3.8E-07 42.9 -0.2 45 237-288 3-47 (70)
355 1uj0_A Signal transducing adap 93.7 0.0099 3.4E-07 42.2 -0.5 42 239-287 3-44 (62)
356 2f6r_A COA synthase, bifunctio 93.6 0.03 1E-06 52.0 2.7 24 103-126 74-97 (281)
357 1zuh_A Shikimate kinase; alpha 93.6 0.035 1.2E-06 46.7 2.8 25 104-128 7-31 (168)
358 1a7j_A Phosphoribulokinase; tr 93.6 0.024 8.2E-07 53.1 2.0 24 104-127 5-28 (290)
359 2g6f_X RHO guanine nucleotide 93.6 0.011 3.7E-07 41.5 -0.4 41 240-287 3-43 (59)
360 3ulr_B SRC substrate cortactin 93.6 0.01 3.6E-07 42.3 -0.5 44 237-287 5-48 (65)
361 3nwj_A ATSK2; P loop, shikimat 93.5 0.043 1.5E-06 50.3 3.5 25 104-128 48-72 (250)
362 1njg_A DNA polymerase III subu 93.5 0.038 1.3E-06 48.1 3.0 24 104-127 45-68 (250)
363 2ew3_A SH3-containing GRB2-lik 93.5 0.011 3.7E-07 43.1 -0.5 41 240-287 2-42 (68)
364 3h4m_A Proteasome-activating n 93.5 0.053 1.8E-06 49.6 4.1 27 103-129 50-76 (285)
365 2ak5_A RHO guanine nucleotide 93.5 0.011 3.9E-07 42.1 -0.4 42 239-287 4-45 (64)
366 1zlm_A Osteoclast stimulating 93.5 0.011 3.8E-07 41.2 -0.4 42 239-287 1-42 (58)
367 1ofh_A ATP-dependent HSL prote 93.5 0.058 2E-06 49.6 4.3 26 103-128 49-74 (310)
368 1g2b_A Spectrin alpha chain; c 93.5 0.0098 3.4E-07 42.2 -0.8 40 240-286 20-59 (62)
369 1z9q_A Neutrophil cytosol fact 93.4 0.013 4.5E-07 44.1 -0.1 46 235-287 12-57 (79)
370 1w70_A Neutrophil cytosol fact 93.4 0.01 3.5E-07 41.8 -0.7 40 241-287 4-43 (60)
371 1tg0_A BBC1 protein, myosin ta 93.4 0.011 3.7E-07 42.8 -0.6 42 241-289 7-48 (68)
372 1b0u_A Histidine permease; ABC 93.4 0.042 1.4E-06 50.6 3.2 26 102-127 30-55 (262)
373 1sgw_A Putative ABC transporte 93.4 0.045 1.5E-06 49.0 3.2 25 103-127 34-58 (214)
374 3b9p_A CG5977-PA, isoform A; A 93.3 0.052 1.8E-06 50.1 3.8 26 104-129 54-79 (297)
375 2rqv_A BUD emergence protein 1 93.3 0.011 3.6E-07 47.5 -0.9 44 239-289 3-46 (108)
376 2cbz_A Multidrug resistance-as 93.3 0.043 1.5E-06 49.8 3.1 25 103-127 30-54 (237)
377 2pcj_A ABC transporter, lipopr 93.3 0.036 1.2E-06 49.8 2.5 25 103-127 29-53 (224)
378 3tqc_A Pantothenate kinase; bi 93.3 0.043 1.5E-06 52.3 3.2 25 103-127 91-115 (321)
379 1x69_A Cortactin isoform A; SH 93.3 0.017 5.6E-07 43.2 0.2 45 236-287 12-56 (79)
380 4a74_A DNA repair and recombin 93.2 0.034 1.2E-06 48.9 2.2 24 103-126 24-47 (231)
381 2ed1_A 130 kDa phosphatidylino 93.2 0.013 4.4E-07 43.4 -0.5 43 239-288 8-50 (76)
382 1k4u_S Phagocyte NADPH oxidase 93.2 0.012 4E-07 41.8 -0.7 41 240-287 4-44 (62)
383 2gnc_A SLIT-ROBO RHO GTPase-ac 93.2 0.0088 3E-07 42.2 -1.3 42 239-287 4-45 (60)
384 1oot_A Hypothetical 40.4 kDa p 93.2 0.012 4.2E-07 41.3 -0.6 42 239-287 1-44 (60)
385 3gfo_A Cobalt import ATP-bindi 93.2 0.045 1.5E-06 50.9 3.0 25 103-127 33-57 (275)
386 1wi7_A SH3-domain kinase bindi 93.2 0.01 3.5E-07 42.9 -1.1 43 238-287 4-46 (68)
387 2chg_A Replication factor C sm 93.2 0.056 1.9E-06 46.5 3.5 23 105-127 39-61 (226)
388 4g1u_C Hemin import ATP-bindin 93.1 0.046 1.6E-06 50.5 3.1 25 103-127 36-60 (266)
389 2olj_A Amino acid ABC transpor 93.1 0.049 1.7E-06 50.3 3.2 26 102-127 48-73 (263)
390 2i3b_A HCR-ntpase, human cance 93.1 0.055 1.9E-06 47.3 3.4 23 105-127 2-24 (189)
391 4i1u_A Dephospho-COA kinase; s 93.1 0.31 1.1E-05 43.4 8.3 23 104-126 9-31 (210)
392 3b85_A Phosphate starvation-in 93.1 0.046 1.6E-06 48.6 2.8 23 104-126 22-44 (208)
393 2ysq_A RHO guanine nucleotide 93.1 0.017 5.9E-07 43.3 0.0 44 237-287 6-49 (81)
394 2fpe_A C-JUN-amino-terminal ki 93.1 0.013 4.4E-07 41.5 -0.7 42 239-287 1-42 (62)
395 2pze_A Cystic fibrosis transme 93.0 0.049 1.7E-06 49.1 3.0 25 103-127 33-57 (229)
396 1sq5_A Pantothenate kinase; P- 93.0 0.044 1.5E-06 51.5 2.8 26 102-127 78-103 (308)
397 3hws_A ATP-dependent CLP prote 93.0 0.07 2.4E-06 51.0 4.3 27 103-129 50-76 (363)
398 2onk_A Molybdate/tungstate ABC 93.0 0.047 1.6E-06 49.7 2.9 23 105-127 25-47 (240)
399 1ujy_A RHO guanine nucleotide 93.0 0.018 6.3E-07 42.5 0.1 43 238-287 7-49 (76)
400 1ji0_A ABC transporter; ATP bi 93.0 0.048 1.7E-06 49.4 3.0 25 103-127 31-55 (240)
401 2ff7_A Alpha-hemolysin translo 92.9 0.05 1.7E-06 49.7 3.0 25 103-127 34-58 (247)
402 1g6h_A High-affinity branched- 92.9 0.05 1.7E-06 49.9 3.0 25 103-127 32-56 (257)
403 2r62_A Cell division protease 92.9 0.044 1.5E-06 49.8 2.6 25 103-127 43-67 (268)
404 1mv5_A LMRA, multidrug resista 92.9 0.047 1.6E-06 49.6 2.8 25 103-127 27-51 (243)
405 2ixe_A Antigen peptide transpo 92.9 0.052 1.8E-06 50.2 3.1 25 103-127 44-68 (271)
406 3b9q_A Chloroplast SRP recepto 92.9 0.05 1.7E-06 51.3 3.0 25 103-127 99-123 (302)
407 1uti_A GRB2-related adaptor pr 92.9 0.013 4.6E-07 40.8 -0.8 38 243-287 3-40 (58)
408 3cf0_A Transitional endoplasmi 92.9 0.065 2.2E-06 50.0 3.8 26 103-128 48-73 (301)
409 2ghi_A Transport protein; mult 92.9 0.053 1.8E-06 49.8 3.1 25 103-127 45-69 (260)
410 1vpl_A ABC transporter, ATP-bi 92.9 0.055 1.9E-06 49.7 3.2 26 102-127 39-64 (256)
411 2djq_A SH3 domain containing r 92.9 0.018 6.2E-07 41.5 -0.1 44 237-287 3-46 (68)
412 2zu0_C Probable ATP-dependent 92.9 0.059 2E-06 49.7 3.4 25 103-127 45-69 (267)
413 2dl8_A SLIT-ROBO RHO GTPase-ac 92.8 0.015 5E-07 42.6 -0.7 44 238-288 6-49 (72)
414 1ixz_A ATP-dependent metallopr 92.8 0.07 2.4E-06 48.1 3.8 25 104-128 49-73 (254)
415 2d2e_A SUFC protein; ABC-ATPas 92.8 0.057 1.9E-06 49.3 3.2 25 103-127 28-52 (250)
416 1zuu_A BZZ1 protein; SH3 domai 92.8 0.012 4E-07 41.1 -1.2 40 241-287 1-41 (58)
417 2w0m_A SSO2452; RECA, SSPF, un 92.8 0.059 2E-06 47.2 3.2 24 103-126 22-45 (235)
418 3syl_A Protein CBBX; photosynt 92.8 0.059 2E-06 49.8 3.3 25 103-127 66-90 (309)
419 2wji_A Ferrous iron transport 92.8 0.058 2E-06 45.0 2.9 22 106-127 5-26 (165)
420 2vp4_A Deoxynucleoside kinase; 92.8 0.045 1.5E-06 49.0 2.3 25 103-127 19-43 (230)
421 2yuo_A CIP85, RUN and TBC1 dom 92.7 0.019 6.4E-07 42.7 -0.2 41 239-286 5-45 (78)
422 2f1r_A Molybdopterin-guanine d 92.7 0.024 8.1E-07 49.0 0.4 23 105-127 3-25 (171)
423 4dhe_A Probable GTP-binding pr 92.7 0.034 1.2E-06 48.7 1.4 23 105-127 30-52 (223)
424 1in4_A RUVB, holliday junction 92.7 0.06 2.1E-06 51.1 3.3 25 104-128 51-75 (334)
425 2qi9_C Vitamin B12 import ATP- 92.7 0.057 2E-06 49.4 3.0 25 103-127 25-49 (249)
426 1um8_A ATP-dependent CLP prote 92.7 0.095 3.2E-06 50.3 4.7 27 103-129 71-97 (376)
427 3e70_C DPA, signal recognition 92.7 0.056 1.9E-06 51.6 3.0 25 103-127 128-152 (328)
428 2f9l_A RAB11B, member RAS onco 92.7 0.057 2E-06 46.6 2.9 22 106-127 7-28 (199)
429 2zej_A Dardarin, leucine-rich 92.7 0.055 1.9E-06 46.1 2.7 21 107-127 5-25 (184)
430 1l8q_A Chromosomal replication 92.7 0.064 2.2E-06 50.3 3.4 25 103-127 36-60 (324)
431 4fln_A Protease DO-like 2, chl 92.7 0.1 3.4E-06 53.2 5.0 35 9-45 277-311 (539)
432 1cka_A C-CRK N-terminal SH3 do 92.7 0.015 5.1E-07 40.4 -0.8 38 243-287 3-40 (57)
433 2v9p_A Replication protein E1; 92.7 0.063 2.2E-06 50.8 3.3 26 102-127 124-149 (305)
434 2gza_A Type IV secretion syste 92.7 0.12 4.2E-06 49.7 5.4 25 103-127 174-198 (361)
435 2cvh_A DNA repair and recombin 92.6 0.069 2.4E-06 46.5 3.3 24 103-126 19-42 (220)
436 2yz2_A Putative ABC transporte 92.6 0.061 2.1E-06 49.6 3.1 26 102-127 31-56 (266)
437 1x2q_A Signal transducing adap 92.6 0.023 7.8E-07 43.4 0.1 44 238-288 14-57 (88)
438 1yn8_A NBP2, NAP1-binding prot 92.6 0.013 4.3E-07 41.0 -1.2 40 241-287 1-40 (59)
439 1oix_A RAS-related protein RAB 92.6 0.053 1.8E-06 46.7 2.5 22 106-127 31-52 (191)
440 2ihy_A ABC transporter, ATP-bi 92.5 0.061 2.1E-06 50.1 3.0 25 103-127 46-70 (279)
441 2fei_A CD2-associated protein; 92.5 0.017 5.8E-07 41.6 -0.6 38 243-287 3-40 (65)
442 2gqi_A RAS GTPase-activating p 92.5 0.021 7.2E-07 41.7 -0.2 42 239-287 5-47 (71)
443 4fcw_A Chaperone protein CLPB; 92.5 0.07 2.4E-06 49.3 3.4 22 106-127 49-70 (311)
444 1q3t_A Cytidylate kinase; nucl 92.5 0.073 2.5E-06 47.7 3.4 26 103-128 15-40 (236)
445 2v1q_A SLA1, cytoskeleton asse 92.5 0.018 6.3E-07 40.3 -0.5 41 241-288 2-43 (60)
446 2grj_A Dephospho-COA kinase; T 92.5 0.062 2.1E-06 47.1 2.8 25 104-128 12-36 (192)
447 3co5_A Putative two-component 92.5 0.034 1.2E-06 46.0 1.0 26 103-128 26-51 (143)
448 2lkc_A Translation initiation 92.5 0.15 5E-06 42.5 5.1 24 104-127 8-31 (178)
449 1ue9_A Intersectin 2; beta bar 92.4 0.025 8.5E-07 42.2 0.1 44 239-289 5-48 (80)
450 2nq2_C Hypothetical ABC transp 92.4 0.064 2.2E-06 49.1 3.0 25 103-127 30-54 (253)
451 2l0a_A STAM-1, signal transduc 92.4 0.015 5.1E-07 42.9 -1.1 42 239-287 15-56 (72)
452 3kta_A Chromosome segregation 92.4 0.06 2.1E-06 45.8 2.6 22 105-126 27-48 (182)
453 2xmf_A Myosin 1E SH3; motor pr 92.4 0.018 6.2E-07 40.4 -0.6 41 240-287 4-44 (60)
454 1d2n_A N-ethylmaleimide-sensit 92.3 0.056 1.9E-06 49.3 2.5 26 103-128 63-88 (272)
455 2oaw_A Spectrin alpha chain, b 92.3 0.018 6.1E-07 41.0 -0.8 40 243-289 3-42 (65)
456 1zx6_A YPR154WP; SH3 domain, p 92.3 0.018 6.1E-07 40.2 -0.7 39 242-287 3-41 (58)
457 2ke9_A Caskin-2; SH3 domain, A 92.3 0.022 7.4E-07 43.2 -0.3 42 239-287 16-58 (83)
458 1awj_A ITK; transferase, regul 92.3 0.017 5.9E-07 42.9 -0.9 42 240-288 19-60 (77)
459 3pqc_A Probable GTP-binding pr 92.3 0.1 3.5E-06 44.1 3.9 23 106-128 25-47 (195)
460 2h92_A Cytidylate kinase; ross 92.3 0.085 2.9E-06 46.3 3.5 24 105-128 4-27 (219)
461 1iy2_A ATP-dependent metallopr 92.2 0.091 3.1E-06 48.2 3.7 25 104-128 73-97 (278)
462 2wjg_A FEOB, ferrous iron tran 92.2 0.076 2.6E-06 44.9 3.0 22 106-127 9-30 (188)
463 2vwf_A Growth factor receptor- 92.2 0.019 6.4E-07 40.0 -0.8 40 242-288 3-42 (58)
464 3pfi_A Holliday junction ATP-d 92.2 0.11 3.9E-06 48.6 4.5 26 103-128 54-79 (338)
465 2dbm_A SH3-containing GRB2-lik 92.2 0.026 8.7E-07 41.4 -0.1 42 239-287 5-46 (73)
466 1jo8_A ABP1P, actin binding pr 92.2 0.017 5.8E-07 40.3 -1.0 39 243-288 2-40 (58)
467 2cjw_A GTP-binding protein GEM 92.2 0.096 3.3E-06 45.1 3.6 21 107-127 9-29 (192)
468 1n0w_A DNA repair protein RAD5 92.2 0.082 2.8E-06 46.8 3.3 24 103-126 23-46 (243)
469 1wxt_A Hypothetical protein FL 92.1 0.024 8.2E-07 41.0 -0.3 42 238-287 4-45 (68)
470 2bjv_A PSP operon transcriptio 92.1 0.095 3.2E-06 47.5 3.7 25 103-127 28-52 (265)
471 2i0n_A Class VII unconventiona 92.1 0.019 6.5E-07 43.0 -0.9 41 240-287 9-50 (80)
472 1xwi_A SKD1 protein; VPS4B, AA 92.1 0.071 2.4E-06 50.4 2.9 25 104-128 45-69 (322)
473 2cub_A Cytoplasmic protein NCK 92.0 0.024 8.2E-07 43.3 -0.4 41 240-287 16-56 (88)
474 1sem_A SEM-5; SRC-homology 3 ( 92.0 0.02 6.9E-07 39.8 -0.8 39 242-287 3-41 (58)
475 3q85_A GTP-binding protein REM 92.0 0.084 2.9E-06 43.6 2.9 21 107-127 5-25 (169)
476 2da9_A SH3-domain kinase bindi 92.0 0.029 9.8E-07 40.7 -0.0 43 238-287 4-48 (70)
477 2og2_A Putative signal recogni 92.0 0.081 2.8E-06 51.2 3.2 25 103-127 156-180 (359)
478 1ugv_A KIAA0621, olygophrenin- 92.0 0.032 1.1E-06 40.8 0.3 42 239-287 8-50 (72)
479 2x8a_A Nuclear valosin-contain 92.0 0.078 2.7E-06 49.0 3.0 23 105-127 45-67 (274)
480 2b86_A Cytoplasmic protein NCK 91.9 0.024 8.3E-07 41.1 -0.4 39 241-287 4-42 (67)
481 1u3o_A Huntingtin-associated p 91.9 0.012 4.1E-07 44.6 -2.1 48 235-290 12-61 (82)
482 1z2a_A RAS-related protein RAB 91.9 0.089 3E-06 43.2 3.0 21 107-127 8-28 (168)
483 3sop_A Neuronal-specific septi 91.9 0.065 2.2E-06 49.6 2.4 21 107-127 5-25 (270)
484 1neg_A Spectrin alpha chain, b 91.9 0.022 7.4E-07 43.3 -0.8 41 239-286 15-55 (83)
485 2nzj_A GTP-binding protein REM 91.9 0.088 3E-06 43.7 3.0 21 107-127 7-27 (175)
486 3eie_A Vacuolar protein sortin 91.9 0.087 3E-06 49.6 3.3 25 104-128 51-75 (322)
487 2nwm_A Vinexin; cell adhesion; 91.9 0.025 8.4E-07 40.7 -0.5 38 243-287 3-40 (65)
488 1hsq_A Phospholipase C-gamma ( 91.8 0.019 6.5E-07 41.8 -1.1 41 241-288 6-46 (71)
489 2dbk_A CRK-like protein; struc 91.8 0.025 8.7E-07 43.1 -0.4 39 241-286 16-56 (88)
490 2yyz_A Sugar ABC transporter, 91.8 0.09 3.1E-06 50.8 3.3 24 103-126 28-51 (359)
491 3thk_A Spectrin alpha chain, b 91.8 0.023 8E-07 41.5 -0.7 43 238-287 2-44 (73)
492 3d8b_A Fidgetin-like protein 1 91.8 0.12 4E-06 49.6 4.1 27 103-129 116-142 (357)
493 2dlp_A KIAA1783 protein; SH3 d 91.8 0.03 1E-06 42.4 -0.1 41 240-287 7-49 (85)
494 1kao_A RAP2A; GTP-binding prot 91.7 0.098 3.3E-06 42.8 3.1 21 107-127 6-26 (167)
495 1x2p_A Protein arginine N-meth 91.7 0.029 9.8E-07 40.5 -0.2 43 238-287 4-46 (68)
496 3fvq_A Fe(3+) IONS import ATP- 91.7 0.079 2.7E-06 51.2 2.8 24 103-126 29-52 (359)
497 3iev_A GTP-binding protein ERA 91.7 0.089 3E-06 49.4 3.1 39 104-142 10-48 (308)
498 2it1_A 362AA long hypothetical 91.7 0.095 3.3E-06 50.7 3.4 24 103-126 28-51 (362)
499 2pjz_A Hypothetical protein ST 91.7 0.084 2.9E-06 48.7 2.9 24 104-127 30-53 (263)
500 1ni3_A YCHF GTPase, YCHF GTP-b 91.7 0.084 2.9E-06 51.7 3.0 44 103-146 19-62 (392)
No 1
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=100.00 E-value=3.7e-35 Score=311.76 Aligned_cols=232 Identities=32% Similarity=0.638 Sum_probs=198.6
Q ss_pred CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe--------------
Q psy16959 1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM-------------- 64 (366)
Q Consensus 1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~-------------- 64 (366)
|+++... ..+++|..|.+||+|+++|.|++||+|++|||.++.++++++++.+|+...+.++++
T Consensus 321 G~~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~L~v~r~~~~~~~~~~~ 400 (721)
T 2xkx_A 321 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAK 400 (721)
T ss_pred cEEEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEEEeCchhhhhhhhh
Confidence 4455422 368999999999999999999999999999999999999999999998765544331
Q ss_pred ---------------------------------------------------------------eccCccc----------
Q psy16959 65 ---------------------------------------------------------------GREAWKT---------- 71 (366)
Q Consensus 65 ---------------------------------------------------------------~~~~w~p---------- 71 (366)
+..||+.
T Consensus 401 ~~~~~~~~~~~s~~~g~~~~~~~~~~~~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~ 480 (721)
T 2xkx_A 401 IHDLREQLMNSSLGSGTASLRSNPKRGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETD 480 (721)
T ss_pred hhhhhhhcccccccCCccccccccccceeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccC
Confidence 4678872
Q ss_pred ------ccccccCc--------------cCccCccccccceeeeccccCCCCCCcEEEeCCCCCChHHHHHHHHhc-cCC
Q psy16959 72 ------SHAFRHTE--------------HTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMED-SDR 130 (366)
Q Consensus 72 ------s~~~~~~~--------------~~~~~~~~~~~YE~V~~~~~~~~~~r~ivL~GpsgsGK~~L~~~L~~~-~~~ 130 (366)
|..+.+++ +..++...+++||+|.++ .+..+|+|||+||+ |++|+++|.+. ++.
T Consensus 481 ~~G~iPs~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Ye~V~~~--~~~~~r~vvl~GP~---K~tl~~~L~~~~~~~ 555 (721)
T 2xkx_A 481 DIGFIPSKRRVERREWSRLKAKDWGSSSGSQGREDSVLSYETVTQM--EVHYARPIIILGPT---KDRANDDLLSEFPDK 555 (721)
T ss_pred ccceeecHHHHHHHHhhhcccccccCcchhhcccccCCCceeeecc--cCCCCCEEEEECCC---HHHHHHHHHHhCccc
Confidence 22221110 112355678899999987 45678999999995 99999999876 568
Q ss_pred cceeeeccCCCCCCCCCCCcceeec-CHHHHHHHHHhcceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccc
Q psy16959 131 FAAAIPHTSRPMKDGEVDGQDYHFI-TRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLT 209 (366)
Q Consensus 131 ~~~~~~~tTr~pr~~E~~g~~y~~v-s~~ef~~~~~~g~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 209 (366)
|.++++||||+||++|.+|++|||| |.++|+++++.|.|+||++++|++||
T Consensus 556 ~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~YG---------------------------- 607 (721)
T 2xkx_A 556 FGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYG---------------------------- 607 (721)
T ss_pred eeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCccce----------------------------
Confidence 9999999999999999999999999 99999999999999999999999999
Q ss_pred cccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHc
Q psy16959 210 DEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE 289 (366)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 289 (366)
T Consensus 608 -------------------------------------------------------------------------------- 607 (721)
T 2xkx_A 608 -------------------------------------------------------------------------------- 607 (721)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCC
Q psy16959 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD 355 (366)
Q Consensus 290 ~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~ 355 (366)
|+.+.|++++++|++|+|++++.++++++...++|++|||.|++.++|++ +..|+.
T Consensus 608 ---------t~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~-l~~R~t 663 (721)
T 2xkx_A 608 ---------TSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRIT 663 (721)
T ss_pred ---------eeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHH-HhccCC
Confidence 89999999999999999999999998898888899999999999999998 777875
No 2
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=99.97 E-value=4.9e-32 Score=258.40 Aligned_cols=163 Identities=33% Similarity=0.671 Sum_probs=141.5
Q ss_pred cccccccC-----ccCccCccccccceeeeccccCCCCCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCC
Q psy16959 71 TSHAFRHT-----EHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKD 144 (366)
Q Consensus 71 ps~~~~~~-----~~~~~~~~~~~~YE~V~~~~~~~~~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~ 144 (366)
||+.+.++ ........++.+||+|.++ .+..+|||||+||+ |++|..+|+++ |+.|.++++||||+||+
T Consensus 64 PS~~~~e~~~~~~~~~~~~~~~~~~YE~V~~~--~~~~~RpvVl~Gp~---K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~ 138 (292)
T 3tvt_A 64 PSKRRWERKMRARDRSVKSEENVLSYEAVQRL--SINYTRPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKRE 138 (292)
T ss_dssp ECHHHHHHHHHC----------CCCEEEEEEE--ECSSCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSCCCT
T ss_pred eChHHHHHHHHHhhccccccccccchheEEec--cCCCCCeEEEeCCC---HHHHHHHHHHhChhhccccccCCccCCcC
Confidence 56555443 2233455678999999988 45788999999995 99999999875 78899999999999999
Q ss_pred CCCCCcceeec-CHHHHHHHHHhcceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccce
Q psy16959 145 GEVDGQDYHFI-TRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFN 223 (366)
Q Consensus 145 ~E~~g~~y~~v-s~~ef~~~~~~g~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
+|++|++|||| +.++|+++++.|.|+||++++|++||
T Consensus 139 gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~YG------------------------------------------ 176 (292)
T 3tvt_A 139 YEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYG------------------------------------------ 176 (292)
T ss_dssp TCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEE------------------------------------------
T ss_pred CccCCccccccCCHHHHHHHHhcCceEEEEEEccceeE------------------------------------------
Confidence 99999999999 88999999999999999999999999
Q ss_pred ecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHH
Q psy16959 224 VFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDA 303 (366)
Q Consensus 224 ~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 303 (366)
|+.++
T Consensus 177 ---------------------------------------------------------------------------T~~~~ 181 (292)
T 3tvt_A 177 ---------------------------------------------------------------------------TSVAS 181 (292)
T ss_dssp ---------------------------------------------------------------------------EEHHH
T ss_pred ---------------------------------------------------------------------------EehHH
Confidence 88999
Q ss_pred HHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCC
Q psy16959 304 IRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD 355 (366)
Q Consensus 304 i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~ 355 (366)
|++++++|++|+|+++++++.+++...++|++|||.|+|.+.|++|+.+|++
T Consensus 182 V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~ 233 (292)
T 3tvt_A 182 VREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTE 233 (292)
T ss_dssp HHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCT
T ss_pred HHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHhCCCc
Confidence 9999999999999999999999998899999999999999999998877765
No 3
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.97 E-value=1.9e-30 Score=232.22 Aligned_cols=136 Identities=33% Similarity=0.704 Sum_probs=128.6
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccch
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLR 183 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~ 183 (366)
|||||+|||||||+||+++|.+. |+.|.++++||||+||++|.+|++|||||.++|+++++.|.|+||++++|++||
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YG-- 79 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYG-- 79 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE--
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceee--
Confidence 79999999999999999999875 778999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhh
Q psy16959 184 TKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKEL 263 (366)
Q Consensus 184 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~ 263 (366)
T Consensus 80 -------------------------------------------------------------------------------- 79 (186)
T 1ex7_A 80 -------------------------------------------------------------------------------- 79 (186)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccC-CCCcEEEEEeCCC
Q psy16959 264 GMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSS-DLKPFVIFVAPPP 342 (366)
Q Consensus 264 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~-~~~p~vi~~~~~~ 342 (366)
++.+.++.++++|++|+++++++++..++.. ++.+++||+.|+|
T Consensus 80 -----------------------------------t~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps 124 (186)
T 1ex7_A 80 -----------------------------------STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPS 124 (186)
T ss_dssp -----------------------------------EEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSC
T ss_pred -----------------------------------eecceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCC
Confidence 7899999999999999999999999888754 6789999999999
Q ss_pred HHHHHHHHHhcCCCC
Q psy16959 343 FELLKQKRIRRGDNF 357 (366)
Q Consensus 343 ~~~l~~~~~~r~~~~ 357 (366)
.++|++|+..||..-
T Consensus 125 ~e~L~~RL~~Rg~e~ 139 (186)
T 1ex7_A 125 VEDLKKRLEGRGTET 139 (186)
T ss_dssp HHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999999999753
No 4
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.96 E-value=1.5e-29 Score=250.63 Aligned_cols=200 Identities=21% Similarity=0.359 Sum_probs=159.5
Q ss_pred CcEEEE-eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc--CCCcEEEe-------------
Q psy16959 1 GATIRN-EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG--LTGQEMTM------------- 64 (366)
Q Consensus 1 G~~i~~-~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~--~~~~v~l~------------- 64 (366)
|+++.. ...+++|+.|.+||||+++| |++||+|++|||.++.++++++++.+|+. .+..+++.
T Consensus 22 G~~i~gg~~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~~~~~~~~~ 100 (391)
T 3tsz_A 22 GLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVE 100 (391)
T ss_dssp CEEEEEETTTEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHHGGGTS
T ss_pred eEEEEecCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCCcccccccc
Confidence 667765 45799999999999999999 99999999999999999999999999985 34455553
Q ss_pred ----------------------------------------eccCcc----------------cccccccC------c---
Q psy16959 65 ----------------------------------------GREAWK----------------TSHAFRHT------E--- 79 (366)
Q Consensus 65 ----------------------------------------~~~~w~----------------ps~~~~~~------~--- 79 (366)
+..||+ ||+.+.++ .
T Consensus 101 ~~~~~~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e~~~~~~~~~~~ 180 (391)
T 3tsz_A 101 SDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPK 180 (391)
T ss_dssp SCCSCCEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHHHHHSSCCC---
T ss_pred cccccccccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHHHHHHHHhhhcc
Confidence 256998 34432221 0
Q ss_pred -----------------------------cCccCccccccceeeeccccCCCCCCcEEEeCCCCCChHHHHHHHHhc-cC
Q psy16959 80 -----------------------------HTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMED-SD 129 (366)
Q Consensus 80 -----------------------------~~~~~~~~~~~YE~V~~~~~~~~~~r~ivL~GpsgsGK~~L~~~L~~~-~~ 129 (366)
++.++...+++||+|.++. +..+|||||+||+| ++|.++|.++ |+
T Consensus 181 ~~~~~~~~~~~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~YE~V~~~~--~~~~r~iVlsGPsg---~tl~~~L~~~~p~ 255 (391)
T 3tsz_A 181 TAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLRE--AGFLRPVTIFGPIA---DVAREKLAREEPD 255 (391)
T ss_dssp ------------------------------------CCCSEEEEEEEE--CSSCCCEEEESTTH---HHHHHHHHHHCTT
T ss_pred cccccccccccccccccccccccccccccccccccccCCCcceEECcC--CCCCCEEEEECCCH---HHHHHHHHhhCcc
Confidence 0011233577899999873 56889999999997 8999999875 66
Q ss_pred CcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccc
Q psy16959 130 RFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLT 209 (366)
Q Consensus 130 ~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 209 (366)
.|.. |||+||++|++|++||||
T Consensus 256 ~~~~----~tr~pR~gE~dG~~Y~Fv------------------------------------------------------ 277 (391)
T 3tsz_A 256 IYQI----AKSEPRDAGTDQRSSGII------------------------------------------------------ 277 (391)
T ss_dssp TEEE----CCCCCCCSSSCCC--CCC------------------------------------------------------
T ss_pred cccc----ccCCCCCcccCCccCCcC------------------------------------------------------
Confidence 5543 689999999999999985
Q ss_pred cccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHc
Q psy16959 210 DEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE 289 (366)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 289 (366)
T Consensus 278 -------------------------------------------------------------------------------- 277 (391)
T 3tsz_A 278 -------------------------------------------------------------------------------- 277 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcC
Q psy16959 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG 354 (366)
Q Consensus 290 ~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~ 354 (366)
+.++|++++++|++|+|+++++++++++...++|++|||.|+|.++|++++.++.
T Consensus 278 ----------~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~ 332 (391)
T 3tsz_A 278 ----------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLC 332 (391)
T ss_dssp ----------CHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHHC
T ss_pred ----------cHHHHHHHHHcCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcCC
Confidence 3668999999999999999999999999888999999999999999999755443
No 5
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=255.68 Aligned_cols=200 Identities=21% Similarity=0.344 Sum_probs=153.2
Q ss_pred CcEEEEe-CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc--CCCcEEEe-------------
Q psy16959 1 GATIRNE-GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG--LTGQEMTM------------- 64 (366)
Q Consensus 1 G~~i~~~-~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~--~~~~v~l~------------- 64 (366)
|+++... ..|++|++|.+||||+++| |++||+|++|||.++.++++++++.+|+. .++.+++.
T Consensus 14 G~~i~gg~~~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g~~~~~~~~ 92 (468)
T 3shw_A 14 GLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVE 92 (468)
T ss_dssp CEEEEEETTTEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHHHHHHH
T ss_pred ceEEEccCcCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCccchhhhc
Confidence 5566433 4789999999999999999 99999999999999999999999999987 45666654
Q ss_pred ----------------------------------------eccCcc----------------cccccccCc---------
Q psy16959 65 ----------------------------------------GREAWK----------------TSHAFRHTE--------- 79 (366)
Q Consensus 65 ----------------------------------------~~~~w~----------------ps~~~~~~~--------- 79 (366)
+..||+ ||+.+.++.
T Consensus 93 ~~~g~s~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~~~ 172 (468)
T 3shw_A 93 SDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPK 172 (468)
T ss_dssp HTCCCCEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHHHHHHHHHC---
T ss_pred cccccccccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHHHHHHHhhhhhc
Confidence 247998 344322210
Q ss_pred -----------------------------cCccCccccccceeeeccccCCCCCCcEEEeCCCCCChHHHHHHHHhc-cC
Q psy16959 80 -----------------------------HTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMED-SD 129 (366)
Q Consensus 80 -----------------------------~~~~~~~~~~~YE~V~~~~~~~~~~r~ivL~GpsgsGK~~L~~~L~~~-~~ 129 (366)
++.++...+++||+|.++ .+..+|||||+||+|+| |.++|.++ |+
T Consensus 173 ~~~~~~~~f~~~~~~r~~kk~~~~~~~~~~~~~~~~~~~~YEeV~~~--~~~~~r~iVlsGPsG~G---l~~~Ll~~~p~ 247 (468)
T 3shw_A 173 TAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLR--EAGFLRPVTIFGPIADV---AREKLAREEPD 247 (468)
T ss_dssp ----------------------------------CCCCCSEEEEEEE--CCSSCCCEEEESTTHHH---HHHHHHHHCTT
T ss_pred cccccccchhhhccccccccccccchhhcccccccccCCCcceeEcc--cCCCCCEEEEECCCHHH---HHHHHHHhCCC
Confidence 011233467899999987 45689999999999998 99998865 66
Q ss_pred CcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccc
Q psy16959 130 RFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLT 209 (366)
Q Consensus 130 ~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 209 (366)
.|.. +||| ||++|++|++|||
T Consensus 248 ~f~s---~~TR-pR~gE~dG~~Y~F------------------------------------------------------- 268 (468)
T 3shw_A 248 IYQI---AKSE-PRDAGTDQRSSGI------------------------------------------------------- 268 (468)
T ss_dssp TEEE---CCCB-C----------CB-------------------------------------------------------
T ss_pred ceee---ecCC-CCCcccccccCCc-------------------------------------------------------
Confidence 6654 4699 9999999999988
Q ss_pred cccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHc
Q psy16959 210 DEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE 289 (366)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 289 (366)
T Consensus 269 -------------------------------------------------------------------------------- 268 (468)
T 3shw_A 269 -------------------------------------------------------------------------------- 268 (468)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcC
Q psy16959 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG 354 (366)
Q Consensus 290 ~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~ 354 (366)
|+.+.|++++++|++|+|+++++++++++...++|++|||.|+|.++|++++.++.
T Consensus 269 ---------Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~ 324 (468)
T 3shw_A 269 ---------IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLC 324 (468)
T ss_dssp ---------CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHHC
T ss_pred ---------ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhccC
Confidence 36889999999999999999999999999888999999999999999998655554
No 6
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=99.95 E-value=1e-28 Score=236.10 Aligned_cols=150 Identities=36% Similarity=0.736 Sum_probs=138.2
Q ss_pred cCccccccceeeeccccCCCCCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeec-CHHHH
Q psy16959 83 FDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFI-TRAQF 160 (366)
Q Consensus 83 ~~~~~~~~YE~V~~~~~~~~~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~v-s~~ef 160 (366)
+....+++||+|.++. +..+|+|||+|| ||+||+++|.+. |+.|.+++++|||+||++|++|++|||| |.++|
T Consensus 86 ~~~~~~~~Ye~V~~~~--~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef 160 (295)
T 1kjw_A 86 GREDSVLSYETVTQME--VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKM 160 (295)
T ss_dssp CCCCCCCCEEEEEEEE--CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHH
T ss_pred cccCCCCCcceeeeec--CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHH
Confidence 4556789999999873 467899999999 699999999875 5689999999999999999999999999 99999
Q ss_pred HHHHHhcceeEEEEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCC
Q psy16959 161 ELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGG 240 (366)
Q Consensus 161 ~~~~~~g~fle~~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 240 (366)
+++++.|.|+|+++++|++||
T Consensus 161 ~~~i~~g~flE~~~~~g~~YG----------------------------------------------------------- 181 (295)
T 1kjw_A 161 EKDIQAHKFIEAGQYNSHLYG----------------------------------------------------------- 181 (295)
T ss_dssp HHHHHTTCEEEEEEETTEEEE-----------------------------------------------------------
T ss_pred HHHHHCCCcEEEEEEcCcEee-----------------------------------------------------------
Confidence 999999999999999999999
Q ss_pred eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccc
Q psy16959 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHP 320 (366)
Q Consensus 241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p 320 (366)
|+.+.|++++++|++|+|++++
T Consensus 182 ----------------------------------------------------------t~~~~V~~~~~~G~~vildid~ 203 (295)
T 1kjw_A 182 ----------------------------------------------------------TSVQSVREVAEQGKHCILDVSA 203 (295)
T ss_dssp ----------------------------------------------------------EEHHHHHHHHHTTCEEEECCCT
T ss_pred ----------------------------------------------------------eeHHHHHHHHhcCCeEEEEeCH
Confidence 7899999999999999999999
Q ss_pred hhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCC
Q psy16959 321 QSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD 355 (366)
Q Consensus 321 ~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~ 355 (366)
+++..++....+|++|||.|+|.++|++ +.+|+.
T Consensus 204 ~g~~~l~~~~~~pi~IfI~pps~~~L~~-L~~R~t 237 (295)
T 1kjw_A 204 NAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRIT 237 (295)
T ss_dssp THHHHHHHTTCCCEEEEECCSSHHHHHH-HCTTSC
T ss_pred HHHHHHHhcccCCeEEEEECCCHHHHHH-HHhcCC
Confidence 9998888778899999999999999998 777774
No 7
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=99.94 E-value=9.1e-30 Score=243.63 Aligned_cols=195 Identities=14% Similarity=0.117 Sum_probs=146.8
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCC---------cceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEE
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDR---------FAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGE 174 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~---------~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~ 174 (366)
+++|+|+||||||||+|+..|++..+. +...++.+|++|+++|.+|++|||++..+|.+.++.+.|.+.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a- 81 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA- 81 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH-
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH-
Confidence 457899999999999999999987543 2345778899999999999999999999999999999998887
Q ss_pred EecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---CC
Q psy16959 175 YEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---YD 251 (366)
Q Consensus 175 ~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~~ 251 (366)
...+.+++++|+.|| +|||||||++||+. ..
T Consensus 82 -------~~~i~~i~~~gk~pI---------------------------------------lVGGTglYi~aLl~g~~~~ 115 (322)
T 3exa_A 82 -------TPLITEIHERGRLPF---------------------------------------LVGGTGLYVNAVIHQFNLG 115 (322)
T ss_dssp -------HHHHHHHHHTTCEEE---------------------------------------EESCCHHHHHHHHHTCCCC
T ss_pred -------HHHHHHHHhCCCcEE---------------------------------------EEcCcHHHHHHHHcCCcCC
Confidence 777888889999999 99999999999953 23
Q ss_pred CC-CCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhhcc-cc
Q psy16959 252 PE-DDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLKIL-RS 328 (366)
Q Consensus 252 p~-~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l-~~ 328 (366)
|. .|..+|.+ +...+... +...+..++...|| ++..|+++|.+|++||+|||.++|.|.+.... ..
T Consensus 116 ~~~~~~~~R~~----------l~~~~~~~-g~~~L~~~L~~~DP~~A~~i~pnd~~Ri~RALEV~~~TG~~~S~~~~~~~ 184 (322)
T 3exa_A 116 DIRADEDYRHE----------LEAFVNSY-GVQALHDKLSKIDPKAAAAIHPNNYRRVIRALEIIKLTGKTVTEQARHEE 184 (322)
T ss_dssp CCBCCHHHHHH----------HHHHHHHS-CHHHHHHHHHTTCHHHHTTSCTTCHHHHHHHHHHHHHTC-----------
T ss_pred CCCCCHHHHHH----------HHHHHHhc-CHHHHHHHHHhhCHHHHhhcCcccHHHHHHHHHHHHHHCCCHHHHhhhcc
Confidence 33 23334444 22233333 33445556666666 88899999999999999999999999554222 11
Q ss_pred --CCCCcEEEEEeCCCHHHHHHHHHhcCCC
Q psy16959 329 --SDLKPFVIFVAPPPFELLKQKRIRRGDN 356 (366)
Q Consensus 329 --~~~~p~vi~~~~~~~~~l~~~~~~r~~~ 356 (366)
...+.+++|+..++|+.|++||++|-|.
T Consensus 185 ~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~ 214 (322)
T 3exa_A 185 ETPSPYNLVMIGLTMERDVLYDRINRRVDQ 214 (322)
T ss_dssp ---CCSEEEEEEEECCHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEEeCCHHHHHHHHHHHHHH
Confidence 2345666666668999999999999654
No 8
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=99.94 E-value=4.8e-30 Score=245.21 Aligned_cols=197 Identities=16% Similarity=0.075 Sum_probs=151.9
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhccCC---------cceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEE
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMEDSDR---------FAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEH 172 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~~~---------~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~ 172 (366)
.++++|+|+||||||||+|+..|++..+. +...++.+|++|+++|.+|++|||++..+|.+.++.+.|.+.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~ 87 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRD 87 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHH
Confidence 45678999999999999999999987553 333457899999999999999999999999999999999888
Q ss_pred EEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---
Q psy16959 173 GEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD--- 249 (366)
Q Consensus 173 ~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~--- 249 (366)
+ ...+.+++++|+.|| +|||||||++|+++
T Consensus 88 a--------~~~i~~i~~~g~~pi---------------------------------------lVGGTglYi~all~gl~ 120 (316)
T 3foz_A 88 A--------LAEMADITAAGRIPL---------------------------------------LVGGTMLYFKALLEGLS 120 (316)
T ss_dssp H--------HHHHHHHHHTTCEEE---------------------------------------EEESCHHHHHHHHSCCC
T ss_pred H--------HHHHHHHHhCCCcEE---------------------------------------EEcCcHHHHHHHHcCcC
Confidence 7 677888889999999 99999999999953
Q ss_pred CCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhhc-cc
Q psy16959 250 YDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLKI-LR 327 (366)
Q Consensus 250 ~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~-l~ 327 (366)
..|+.|..+|.+ +...+.. .+...+..++...|| ++..|+++|.+|++||+|||.+++.|.+... ..
T Consensus 121 ~~p~~~~~~R~~----------l~~~~~~-~g~~~l~~~L~~~DP~~A~ri~pnd~~Ri~RALEV~~~TG~~~S~~~~~~ 189 (316)
T 3foz_A 121 PLPSADPEVRAR----------IEQQAAE-QGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVFFISGKTLTELTQTS 189 (316)
T ss_dssp CCCCCCHHHHHH----------HHHHHHH-HHHHHHHHHHHHHCHHHHHHSCTTCHHHHHHHHHHHHHHSSCHHHHHTSC
T ss_pred CCCCCCHHHHHH----------HHHHHHh-cCHHHHHHHHHHhCHHHHhhCCCccHHHHHHHHHHHHHHCCCHHHHhhcc
Confidence 466666655554 2222222 233334445555566 7888999999999999999999999955422 21
Q ss_pred -cCCCCcEEEEEeCC-CHHHHHHHHHhcCCC
Q psy16959 328 -SSDLKPFVIFVAPP-PFELLKQKRIRRGDN 356 (366)
Q Consensus 328 -~~~~~p~vi~~~~~-~~~~l~~~~~~r~~~ 356 (366)
....+.+++|+..+ +|+.|++||++|-|.
T Consensus 190 ~~~~~~~~~~i~L~~~~R~~L~~RI~~Rvd~ 220 (316)
T 3foz_A 190 GDALPYQVHQFAIAPASRELLHQRIEQRFHQ 220 (316)
T ss_dssp CCCCSSEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 12234555554445 999999999999654
No 9
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=99.93 E-value=1.3e-27 Score=235.91 Aligned_cols=193 Identities=15% Similarity=0.124 Sum_probs=149.9
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccCC---------cceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEE
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSDR---------FAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEY 175 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~~---------~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~ 175 (366)
++|+|+||||||||+|+..|++..+. +...++++|++|+.+|.+|++|||++..+|.+.++.+.|++++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a-- 80 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETEC-- 80 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHH--
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHH--
Confidence 57899999999999999999986443 2333678999999999999999999999999999999999998
Q ss_pred ecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCC---C
Q psy16959 176 EKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYD---P 252 (366)
Q Consensus 176 ~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~---p 252 (366)
...+.+++++|+.|| +||||||||+||++.. |
T Consensus 81 ------~~~i~~i~~~g~~pi---------------------------------------lVGGTglYi~aLl~gl~~~~ 115 (409)
T 3eph_A 81 ------MNAIEDIHRRGKIPI---------------------------------------VVGGTHYYLQTLFNKRVDTK 115 (409)
T ss_dssp ------HHHHHHHHTTTCEEE---------------------------------------EECSCGGGGGGGGTCSCCCS
T ss_pred ------HHHHHHHHhcCCCEE---------------------------------------EECChHHHHHHHHccccCCC
Confidence 788889999999999 9999999999997532 2
Q ss_pred C-CCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhhcc-c-c
Q psy16959 253 E-DDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLKIL-R-S 328 (366)
Q Consensus 253 ~-~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l-~-~ 328 (366)
+ .+...+.. ...+...+....++ ++...|| ++..|+++|.+||+||+|||..+|.|.+.... . .
T Consensus 116 ~~~~~~~r~~-----------~~~~~~~g~~~L~~-~L~~~DP~~A~rihpnd~~Ri~RALEV~~~TG~~~S~~~~~~~~ 183 (409)
T 3eph_A 116 SSERKLTRKQ-----------LDILESTDPDVIYN-TLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQKI 183 (409)
T ss_dssp SSCCCCCHHH-----------HHHHTCSSSSSHHH-HHHHSCHHHHTTSCTTCHHHHHHHHHHHHHHCSCHHHHHHTCCC
T ss_pred CccCHHHHHH-----------HHHHhccCHHHHHH-HHHHhCHHHHHhcCcccHHHHHHHHHHHHHHCCCHHHHHhhccC
Confidence 2 22222222 23333333444444 4555566 88889999999999999999999999554221 1 2
Q ss_pred CCCCcEEEEEeCCCHHHHHHHHHhcCCC
Q psy16959 329 SDLKPFVIFVAPPPFELLKQKRIRRGDN 356 (366)
Q Consensus 329 ~~~~p~vi~~~~~~~~~l~~~~~~r~~~ 356 (366)
...|..++|+...+|+.|++||++|-|.
T Consensus 184 ~~~~~~~~i~L~~~R~~L~~RI~~Rvd~ 211 (409)
T 3eph_A 184 TLKFDTLFLWLYSKPEPLFQRLDDRVDD 211 (409)
T ss_dssp CCSSEEEEEEEECCHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHHHHH
Confidence 2345666666678999999999999654
No 10
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.90 E-value=1.1e-23 Score=189.70 Aligned_cols=127 Identities=33% Similarity=0.768 Sum_probs=117.9
Q ss_pred CCCCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccc
Q psy16959 101 SNEKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSY 179 (366)
Q Consensus 101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~ 179 (366)
+..+++|+|+||||+|||||++.|++. ++.+..++++|||+|+.+|.+|++|+|++.++|.+++..+.|++++++.|++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~ 95 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNM 95 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhcee
Confidence 346789999999999999999999976 4478899999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcc
Q psy16959 180 YGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIP 259 (366)
Q Consensus 180 YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~ 259 (366)
||
T Consensus 96 YG------------------------------------------------------------------------------ 97 (197)
T 3ney_A 96 FG------------------------------------------------------------------------------ 97 (197)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 99
Q ss_pred hhhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEe
Q psy16959 260 CKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVA 339 (366)
Q Consensus 260 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~ 339 (366)
+..+.+++++++|++|+|+++++++..++.....|++||+.
T Consensus 98 ---------------------------------------t~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~ 138 (197)
T 3ney_A 98 ---------------------------------------TKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIA 138 (197)
T ss_dssp ---------------------------------------EEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEE
T ss_pred ---------------------------------------cchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEe
Confidence 67888999999999999999999999888777789999999
Q ss_pred CCCHH
Q psy16959 340 PPPFE 344 (366)
Q Consensus 340 ~~~~~ 344 (366)
|+|.+
T Consensus 139 Pps~~ 143 (197)
T 3ney_A 139 PTDQG 143 (197)
T ss_dssp ECCBS
T ss_pred CCCcc
Confidence 99875
No 11
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=99.90 E-value=5.5e-26 Score=219.07 Aligned_cols=196 Identities=15% Similarity=0.055 Sum_probs=103.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceee---------eccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEE
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAI---------PHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHG 173 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~---------~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~ 173 (366)
++++|+|+||+|||||+|+..|++..+...+++ +.+|++|+.+|.+|++|||++..++...++.+.|.+..
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a 83 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA 83 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH
Confidence 556899999999999999999998765433333 66899999999999999999999998888888887776
Q ss_pred EEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---C
Q psy16959 174 EYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---Y 250 (366)
Q Consensus 174 ~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~ 250 (366)
...+.+++++|+.+| ++||+|+|++|++. .
T Consensus 84 --------~~~i~~i~~~g~~~I---------------------------------------lvGGt~~y~~all~g~~~ 116 (323)
T 3crm_A 84 --------LAAMAKATARGRIPL---------------------------------------LVGGTMLYYKALLEGLAD 116 (323)
T ss_dssp --------HHHHHHHHHTTCEEE---------------------------------------EEESCHHHHHHHHCCC--
T ss_pred --------HHHHHHHHHcCCeEE---------------------------------------EECCchhhHHHHHcCCCC
Confidence 666778888999999 99999999999954 3
Q ss_pred CCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhh-cccc
Q psy16959 251 DPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLK-ILRS 328 (366)
Q Consensus 251 ~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~-~l~~ 328 (366)
.|..+..+|.+ +.......+...+..++...|| ++..|+++|.+|++||+|||..++.|.+.. ....
T Consensus 117 ~p~~~~~~R~~-----------l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~nd~~Ri~RALEv~~~tG~~~s~~~~~~~ 185 (323)
T 3crm_A 117 MPGADPEVRAA-----------IEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQRLMRALEVYRLGGVSMSDLRRRQS 185 (323)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCHHHHHH-----------HHHHHHHcCHHHHHHHHHHhCHHHHhhcCCCCHHHHHHHHHHHHHHCCCHHHHHhhcc
Confidence 55555555554 2222222222334455666677 888999999999999999999999995542 1111
Q ss_pred ------------CCCCcEEEE-EeCCCHHHHHHHHHhcCCC
Q psy16959 329 ------------SDLKPFVIF-VAPPPFELLKQKRIRRGDN 356 (366)
Q Consensus 329 ------------~~~~p~vi~-~~~~~~~~l~~~~~~r~~~ 356 (366)
...|..++| +.+++|+.|++||++|-|.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~L~~~~r~~L~~RI~~Rvd~ 226 (323)
T 3crm_A 186 AEKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQ 226 (323)
T ss_dssp --------------CSEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCceEEEEEcCCCHHHHHHHHHHHHHH
Confidence 112444444 5544699999999999653
No 12
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.82 E-value=1.8e-20 Score=169.54 Aligned_cols=136 Identities=34% Similarity=0.552 Sum_probs=119.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc-CCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS-DRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG 181 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~-~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG 181 (366)
.+++|+|+||+|||||||++.|+... ..+..++++|||+|+.+|.+|++|+|++..+|..++..+.|++++++.+++||
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg 86 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG 86 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence 46789999999999999999999864 45899999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchh
Q psy16959 182 LRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCK 261 (366)
Q Consensus 182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~ 261 (366)
T Consensus 87 -------------------------------------------------------------------------------- 86 (208)
T 3tau_A 87 -------------------------------------------------------------------------------- 86 (208)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCC
Q psy16959 262 ELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPP 341 (366)
Q Consensus 262 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~ 341 (366)
+..+.+.+++++|++|++++.+.+...+......+.+||+.|+
T Consensus 87 -------------------------------------~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~p 129 (208)
T 3tau_A 87 -------------------------------------TPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPP 129 (208)
T ss_dssp -------------------------------------EEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECT
T ss_pred -------------------------------------CcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCC
Confidence 6778899999999999999999888777655556799999999
Q ss_pred CHHHHHHHHHhcCC
Q psy16959 342 PFELLKQKRIRRGD 355 (366)
Q Consensus 342 ~~~~l~~~~~~r~~ 355 (366)
+.++|++|+.+|+.
T Consensus 130 s~~~l~~Rl~~R~~ 143 (208)
T 3tau_A 130 DLSELKNRIIGRGT 143 (208)
T ss_dssp TTTTSSCC------
T ss_pred CHHHHHHHHHhcCC
Confidence 99999999999985
No 13
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.82 E-value=4.3e-20 Score=163.92 Aligned_cols=136 Identities=33% Similarity=0.715 Sum_probs=113.7
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGL 182 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~ 182 (366)
+++++|+||+|||||||++.|+.. ++.++.++++|||+|+.+|++|.+|+|++...|..++..+.|+++.++.+++||
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg- 79 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYG- 79 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceecc-
Confidence 478999999999999999999875 557889999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhh
Q psy16959 183 RTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKE 262 (366)
Q Consensus 183 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~ 262 (366)
T Consensus 80 -------------------------------------------------------------------------------- 79 (186)
T 3a00_A 80 -------------------------------------------------------------------------------- 79 (186)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhcccc-CCCCcEEEEEeCC
Q psy16959 263 LGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRS-SDLKPFVIFVAPP 341 (366)
Q Consensus 263 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~-~~~~p~vi~~~~~ 341 (366)
+..+.+.++++++++|++++++++...++. ....+.+||+.|+
T Consensus 80 ------------------------------------~~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p 123 (186)
T 3a00_A 80 ------------------------------------STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 123 (186)
T ss_dssp ------------------------------------EEHHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECS
T ss_pred ------------------------------------CcHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECc
Confidence 567789999999999999999999888887 6678899999999
Q ss_pred CHHHHHHHHHhcCCC
Q psy16959 342 PFELLKQKRIRRGDN 356 (366)
Q Consensus 342 ~~~~l~~~~~~r~~~ 356 (366)
+.+.|.+|+..|+..
T Consensus 124 ~~~~l~~Rl~~Rg~~ 138 (186)
T 3a00_A 124 SVEDLKKRLEGRGTE 138 (186)
T ss_dssp CC-------------
T ss_pred CHHHHHHHHHhcCCC
Confidence 999999999999865
No 14
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.81 E-value=2e-19 Score=161.74 Aligned_cols=136 Identities=28% Similarity=0.584 Sum_probs=120.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCC-cceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDR-FAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG 181 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~-~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG 181 (366)
.+++|+|+||+|||||||++.|++..+. +..++++|||+|+.+|.+|.+|+|++.++|..++..|.|++++++.|+.||
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYG 90 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCeec
Confidence 4678999999999999999999987544 888899999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchh
Q psy16959 182 LRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCK 261 (366)
Q Consensus 182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~ 261 (366)
T Consensus 91 -------------------------------------------------------------------------------- 90 (204)
T 2qor_A 91 -------------------------------------------------------------------------------- 90 (204)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCC--CcEEEEEe
Q psy16959 262 ELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDL--KPFVIFVA 339 (366)
Q Consensus 262 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~--~p~vi~~~ 339 (366)
+..+.+..+++.|+.|++++.+.+...++.... .+++||+.
T Consensus 91 -------------------------------------~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~ 133 (204)
T 2qor_A 91 -------------------------------------TLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVK 133 (204)
T ss_dssp -------------------------------------EEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEE
T ss_pred -------------------------------------CCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEc
Confidence 456678889999999999999988776664322 46899999
Q ss_pred CCCHHHHHHHHHhcCC
Q psy16959 340 PPPFELLKQKRIRRGD 355 (366)
Q Consensus 340 ~~~~~~l~~~~~~r~~ 355 (366)
+++.+.|.+|+..|+.
T Consensus 134 ~~s~e~l~~Rl~~R~~ 149 (204)
T 2qor_A 134 PPSIDILLGRLKNRNT 149 (204)
T ss_dssp CSCHHHHHHHHHTCTT
T ss_pred CCCHHHHHHHHHHcCC
Confidence 8999999999999985
No 15
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.81 E-value=4e-22 Score=193.27 Aligned_cols=194 Identities=14% Similarity=0.102 Sum_probs=138.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCc---------ceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEE
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRF---------AAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHG 173 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~---------~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~ 173 (366)
++++|+|+||||||||+|+..|++..+.. ....+.+|++|+..|..+++||+++..++...+..+.|.+..
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a 85 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRA 85 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHH
Confidence 34688999999999999999999865422 334567899999999999999999988877666666776654
Q ss_pred EEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC---C
Q psy16959 174 EYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---Y 250 (366)
Q Consensus 174 ~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~---~ 250 (366)
...+.+++.+|..+| ++||+|||++++.+ .
T Consensus 86 --------~~~i~~i~~~g~~~I---------------------------------------lvGGt~ly~~~l~~~l~~ 118 (340)
T 3d3q_A 86 --------EKYIKDITRRGKVPI---------------------------------------IAGGTGLYIQSLLYNYAF 118 (340)
T ss_dssp --------HHHHHHHHHTTCEEE---------------------------------------EECCCHHHHHHHHBCSCC
T ss_pred --------HHHHHHHHhCCCcEE---------------------------------------EECChhhhHHHHHhcccc
Confidence 444556667899999 89999999999943 3
Q ss_pred CCC-CCCC----cchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHHHHHHHHcCCeEEEcccchhhh
Q psy16959 251 DPE-DDMY----IPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDAIRTVVNAGKICVLNLHPQSLK 324 (366)
Q Consensus 251 ~p~-~d~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~i~~vir~~k~~~l~~~p~~~~ 324 (366)
.|. .|.. ++.+ +.. + ...+.....+.+...|| ++..|+++|.+|++||+|||..+|.|.+..
T Consensus 119 ~~~~~d~~~~~Rlrrr----------l~r-~-~~~G~~~l~~~L~~vdP~~a~~I~p~d~~Ri~RALEv~~~tG~~~s~~ 186 (340)
T 3d3q_A 119 EDESISEDKMKQVKLK----------LKE-L-EHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLLSSR 186 (340)
T ss_dssp C---CCHHHHHHHHHH----------HHT-T-SSSCHHHHHHHHHHHCHHHHHHSCTTCHHHHHHHHHHHHHHCSCSHHH
T ss_pred cCCCCChHHHHHHHHH----------HHH-H-HhcCHHHHHHHHHhhCcHHHhhcCccCchhhhhHHHHHHHhCCChHHH
Confidence 344 4443 3322 111 1 22222344444555566 777799999999999999999999995542
Q ss_pred -cc-c-cCCCCcEEEEEeCCCHHHHHHHHHhcCCC
Q psy16959 325 -IL-R-SSDLKPFVIFVAPPPFELLKQKRIRRGDN 356 (366)
Q Consensus 325 -~l-~-~~~~~p~vi~~~~~~~~~l~~~~~~r~~~ 356 (366)
.. . ... |.+++|+..++|+.|++||++|-|.
T Consensus 187 ~~~~~~~~~-~~~~~~~L~~~r~~L~~RI~~Rvd~ 220 (340)
T 3d3q_A 187 KKVQQFTEN-YDTLLIGIEMSRETLYLRINKRVDI 220 (340)
T ss_dssp HHHHHHSBC-SEEEEEEEECCHHHHHHHHHHHHHH
T ss_pred hhhccCCCC-CceEEEEeCCCHHHHHHHHHHHHHH
Confidence 11 1 123 5556665557899999999999654
No 16
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.79 E-value=1.7e-19 Score=159.39 Aligned_cols=131 Identities=37% Similarity=0.743 Sum_probs=113.3
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYY 180 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~Y 180 (366)
..+++++|+||||||||||++.|... +..+..++++|||+|+.+|.+|.+|+|++..+|..++..+.|++++++.+++|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~y 82 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMY 82 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCccc
Confidence 45679999999999999999999875 33577889999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcch
Q psy16959 181 GLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPC 260 (366)
Q Consensus 181 G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~ 260 (366)
|
T Consensus 83 g------------------------------------------------------------------------------- 83 (180)
T 1kgd_A 83 G------------------------------------------------------------------------------- 83 (180)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 9
Q ss_pred hhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeC
Q psy16959 261 KELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAP 340 (366)
Q Consensus 261 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~ 340 (366)
+..+.+.+++++|++|++++++.++..++.....+++||+.+
T Consensus 84 --------------------------------------~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~ 125 (180)
T 1kgd_A 84 --------------------------------------TKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAA 125 (180)
T ss_dssp --------------------------------------EEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEEC
T ss_pred --------------------------------------ccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEEC
Confidence 566778999999999999999999888876555789999999
Q ss_pred CCHHHHHHH
Q psy16959 341 PPFELLKQK 349 (366)
Q Consensus 341 ~~~~~l~~~ 349 (366)
++.+.|++|
T Consensus 126 p~~~~l~~R 134 (180)
T 1kgd_A 126 PTITPGLNE 134 (180)
T ss_dssp CSCCTTSCC
T ss_pred CCHHHHHhh
Confidence 888777653
No 17
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.71 E-value=5.9e-17 Score=148.14 Aligned_cols=136 Identities=29% Similarity=0.460 Sum_probs=117.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc-cC-CcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED-SD-RFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYY 180 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~-~~-~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~Y 180 (366)
...+++|+||+|||||||++.|+.. +. .+..++++|||+|+.+|.+++.|+|.+...|..+...|.|+++.++.+++|
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y 94 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY 94 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence 4678999999999999999999875 32 467789999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcch
Q psy16959 181 GLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPC 260 (366)
Q Consensus 181 G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~ 260 (366)
|
T Consensus 95 g------------------------------------------------------------------------------- 95 (219)
T 1s96_A 95 G------------------------------------------------------------------------------- 95 (219)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 9
Q ss_pred hhhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeC
Q psy16959 261 KELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAP 340 (366)
Q Consensus 261 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~ 340 (366)
++.+.++++++.|++|+||+++.+...+...-..+..||+.+
T Consensus 96 --------------------------------------~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~t 137 (219)
T 1s96_A 96 --------------------------------------TSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILP 137 (219)
T ss_dssp --------------------------------------EEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEEC
T ss_pred --------------------------------------CCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEEC
Confidence 445567778888999999999988876664312578899999
Q ss_pred CCHHHHHHHHHhcCC
Q psy16959 341 PPFELLKQKRIRRGD 355 (366)
Q Consensus 341 ~~~~~l~~~~~~r~~ 355 (366)
.+.+.|.+|+..||.
T Consensus 138 h~~~~l~~Rl~~rG~ 152 (219)
T 1s96_A 138 PSKIELDRRLRGRGQ 152 (219)
T ss_dssp SSHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHcCC
Confidence 999999999998983
No 18
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.70 E-value=2.2e-16 Score=141.59 Aligned_cols=135 Identities=40% Similarity=0.746 Sum_probs=119.7
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGL 182 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~ 182 (366)
+++++|+||+|+|||||++.|... +..++.++++|||+|+.++++|.+|++++..+|...+..+.|++++++.++.||
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g- 82 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG- 82 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCC-
Confidence 578999999999999999999875 557888999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhh
Q psy16959 183 RTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKE 262 (366)
Q Consensus 183 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~ 262 (366)
T Consensus 83 -------------------------------------------------------------------------------- 82 (198)
T 1lvg_A 83 -------------------------------------------------------------------------------- 82 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCC
Q psy16959 263 LGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPP 342 (366)
Q Consensus 263 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~ 342 (366)
++.+.++++++.+++|+++..+.+........+.|.++|+.+++
T Consensus 83 ------------------------------------~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~ 126 (198)
T 1lvg_A 83 ------------------------------------TSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPS 126 (198)
T ss_dssp ------------------------------------EEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSC
T ss_pred ------------------------------------CCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCC
Confidence 56678888999999999999888776655445678889999999
Q ss_pred HHHHHHHHHhcCC
Q psy16959 343 FELLKQKRIRRGD 355 (366)
Q Consensus 343 ~~~l~~~~~~r~~ 355 (366)
...|.++...|+.
T Consensus 127 ~~ilde~~~~~d~ 139 (198)
T 1lvg_A 127 LDVLEQRLRLRNT 139 (198)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999988865
No 19
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.65 E-value=1.3e-17 Score=161.32 Aligned_cols=100 Identities=12% Similarity=0.128 Sum_probs=87.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCC---------cceeeeccCCCCCCCCCCCcceeecCHHHH-HHHHHhcceeEE
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDR---------FAAAIPHTSRPMKDGEVDGQDYHFITRAQF-ELDILARKFIEH 172 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~---------~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef-~~~~~~g~fle~ 172 (366)
++++|+|+||||||||+|+..|++..+. +...++.+|++|+.+|..|++|||++..++ .+.++.+.|.+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~ 118 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL 118 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence 3457999999999999999999987652 334567889999999999999999999999 788899999888
Q ss_pred EEEecccccchhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecC
Q psy16959 173 GEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD 249 (366)
Q Consensus 173 ~~~~g~~YG~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~ 249 (366)
+ ...+.++.++|+.|| ++||+|+|+++++.
T Consensus 119 a--------~~~i~~i~~~g~~pI---------------------------------------lvGGtglYi~all~ 148 (339)
T 3a8t_A 119 A--------GKAVSEITGRRKLPV---------------------------------------LVGGSNSFIHALLV 148 (339)
T ss_dssp H--------HHHHHHHHHTTCEEE---------------------------------------EECCCHHHHHHHHB
T ss_pred H--------HHHHHHHHhcCCeEE---------------------------------------EEcCHHHHHHHHHh
Confidence 7 677778888999999 99999999999964
No 20
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.58 E-value=2.1e-14 Score=127.85 Aligned_cols=136 Identities=26% Similarity=0.500 Sum_probs=119.3
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEecccccch
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLR 183 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG~~ 183 (366)
+.+++|+||+|||||||++.|+...+.+......+|++++.++..++.|+|.+...|..+...+.|+++..+.++.||
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 84 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYG-- 84 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE--
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeeccccc--
Confidence 568999999999999999999876446667778889999999999999999999999999999999999999999999
Q ss_pred hhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchhhh
Q psy16959 184 TKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKEL 263 (366)
Q Consensus 184 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~~~ 263 (366)
T Consensus 85 -------------------------------------------------------------------------------- 84 (205)
T 3tr0_A 85 -------------------------------------------------------------------------------- 84 (205)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCH
Q psy16959 264 GMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPF 343 (366)
Q Consensus 264 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~ 343 (366)
+..+.+.+++.+++++++++.+.+...+......+.+||+.+++.
T Consensus 85 -----------------------------------~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (205)
T 3tr0_A 85 -----------------------------------TEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSI 129 (205)
T ss_dssp -----------------------------------EEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCH
T ss_pred -----------------------------------chHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCH
Confidence 566788899999999999999888766665445678899999999
Q ss_pred HHHHHHHHhcCCC
Q psy16959 344 ELLKQKRIRRGDN 356 (366)
Q Consensus 344 ~~l~~~~~~r~~~ 356 (366)
+.+.+|+.+|+..
T Consensus 130 e~l~~Rl~~R~~~ 142 (205)
T 3tr0_A 130 EALRERLIKRRQD 142 (205)
T ss_dssp HHHHHHHHTCTTS
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999764
No 21
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=99.57 E-value=3.5e-15 Score=142.43 Aligned_cols=56 Identities=25% Similarity=0.421 Sum_probs=51.2
Q ss_pred CChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcC
Q psy16959 299 TSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG 354 (366)
Q Consensus 299 i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~ 354 (366)
|+.++|++++++|++|+|+++++++++++...++|++|||.|+|.++|++|+.+++
T Consensus 186 is~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS~eeL~~rr~R~~ 241 (308)
T 3kfv_A 186 IKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLA 241 (308)
T ss_dssp CCHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCCCEEEEEEESCHHHHHHHHHHHS
T ss_pred ecHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCCCEEEEEeCCCHHHHHHHHhcCC
Confidence 67899999999999999999999999999888999999999999999999755444
No 22
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.55 E-value=9.9e-15 Score=133.32 Aligned_cols=136 Identities=24% Similarity=0.394 Sum_probs=105.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHH-hccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG 181 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~-~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG 181 (366)
.+.+++|+||+|||||||++.|+ .....+...++++|++|+.++.+|.+|++++...|..+...+.|+++..+.++.||
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFYG 105 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccccCC
Confidence 45789999999999999999999 76445778889999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchh
Q psy16959 182 LRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCK 261 (366)
Q Consensus 182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~ 261 (366)
T Consensus 106 -------------------------------------------------------------------------------- 105 (231)
T 3lnc_A 106 -------------------------------------------------------------------------------- 105 (231)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCC-CCcEEEEEeC
Q psy16959 262 ELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSD-LKPFVIFVAP 340 (366)
Q Consensus 262 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~-~~p~vi~~~~ 340 (366)
+....+.++++++++|++++.+.+...++..- ..+.+||+.+
T Consensus 106 -------------------------------------~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~ 148 (231)
T 3lnc_A 106 -------------------------------------VPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMP 148 (231)
T ss_dssp -------------------------------------EECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEEC
T ss_pred -------------------------------------CCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEEC
Confidence 34456778889999999999887776555331 2457889999
Q ss_pred CCHHHHHHHHHhcCC
Q psy16959 341 PPFELLKQKRIRRGD 355 (366)
Q Consensus 341 ~~~~~l~~~~~~r~~ 355 (366)
++.+.|.+|+..|+.
T Consensus 149 ~~~~~l~~Rl~~R~~ 163 (231)
T 3lnc_A 149 PSMEELRRRLCGRRA 163 (231)
T ss_dssp SCHHHHHHC------
T ss_pred CcHHHHHHHHHHcCC
Confidence 999999999998843
No 23
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.42 E-value=1.2e-12 Score=116.38 Aligned_cols=136 Identities=36% Similarity=0.653 Sum_probs=99.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc-CCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS-DRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG 181 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~-~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG 181 (366)
.+.+++|+||+||||||++..|+... +.....+.+++++|..++.++..|.|.+...|..+...+.++++..+.++.||
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 84 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYG 84 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecC
Confidence 35689999999999999999998763 34444667889998888888999999999999999999999999999888898
Q ss_pred chhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchh
Q psy16959 182 LRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCK 261 (366)
Q Consensus 182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~ 261 (366)
T Consensus 85 -------------------------------------------------------------------------------- 84 (207)
T 2j41_A 85 -------------------------------------------------------------------------------- 84 (207)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCCCCcEEEEEeCC
Q psy16959 262 ELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPP 341 (366)
Q Consensus 262 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~~~p~vi~~~~~ 341 (366)
...+.++.++++++.+++++.+.....++..-..++++++.++
T Consensus 85 -------------------------------------~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~ 127 (207)
T 2j41_A 85 -------------------------------------TPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPP 127 (207)
T ss_dssp -------------------------------------EEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECC
T ss_pred -------------------------------------CCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECC
Confidence 3455677788889999999887665555432124678888888
Q ss_pred CHHHHHHHHHhcCC
Q psy16959 342 PFELLKQKRIRRGD 355 (366)
Q Consensus 342 ~~~~l~~~~~~r~~ 355 (366)
+.+.+.+|+..|++
T Consensus 128 ~~~~~~~Rl~~R~~ 141 (207)
T 2j41_A 128 SLEHLRERLVGRGT 141 (207)
T ss_dssp C-------------
T ss_pred CHHHHHHHHHhcCC
Confidence 88999999988874
No 24
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.39 E-value=5.7e-12 Score=114.50 Aligned_cols=137 Identities=26% Similarity=0.566 Sum_probs=114.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc-cCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEeccccc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG 181 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~-~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g~~YG 181 (366)
.+.+++|+||+|+|||||++.|+.. |..+.+..+++|++++.++.+++.|.|.+...|..+...+.|+++.++.++.||
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 101 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYG 101 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccCC
Confidence 4679999999999999999999865 434445678889999888999999999999999999889999999999888888
Q ss_pred chhhhhHHhcCCCeeeeecccccccccccccCCCccccccceecccccccccccccCCCeeeeeeecCCCCCCCCCcchh
Q psy16959 182 LRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCK 261 (366)
Q Consensus 182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~glYirAl~~~~p~~d~~~~~~ 261 (366)
T Consensus 102 -------------------------------------------------------------------------------- 101 (218)
T 1z6g_A 102 -------------------------------------------------------------------------------- 101 (218)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCccchhHHHHHhcCChhhHHHHHcccCcccccCCChHHHHHHHHcCCeEEEcccchhhhccccCC--CCcEEEEEe
Q psy16959 262 ELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSD--LKPFVIFVA 339 (366)
Q Consensus 262 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~vir~~k~~~l~~~p~~~~~l~~~~--~~p~vi~~~ 339 (366)
.....+.++++++++++++.++++.++.+..- ..|..+|+.
T Consensus 102 -------------------------------------~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~ 144 (218)
T 1z6g_A 102 -------------------------------------TLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIK 144 (218)
T ss_dssp -------------------------------------EEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEE
T ss_pred -------------------------------------CcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEe
Confidence 33456788888999999999998877666432 356889999
Q ss_pred CCCHHHHHHHHHhcCCC
Q psy16959 340 PPPFELLKQKRIRRGDN 356 (366)
Q Consensus 340 ~~~~~~l~~~~~~r~~~ 356 (366)
+++...|.++...|...
T Consensus 145 ~~~~~~Lde~~~~~d~~ 161 (218)
T 1z6g_A 145 PPSTDVLLSRLLTRNTE 161 (218)
T ss_dssp CSCHHHHHHHHHHTCCC
T ss_pred CcCHHHHHHHHHhcCCC
Confidence 99999999998888654
No 25
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=99.37 E-value=1.1e-13 Score=132.95 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=51.1
Q ss_pred ChHHHHHHHHcCCeEEEcccch-hhhccccCCCCcEEEEEeCCCHHHHHHHHHhcCC
Q psy16959 300 SLDAIRTVVNAGKICVLNLHPQ-SLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD 355 (366)
Q Consensus 300 ~~~~i~~vir~~k~~~l~~~p~-~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~~ 355 (366)
.++.+..+.++|++|+|+++++ ++.+++.....|++|||.|+|.++|++|+..||.
T Consensus 218 eVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt 274 (337)
T 4dey_A 218 EIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGK 274 (337)
T ss_dssp HHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCc
Confidence 4667777888999999999998 9999998888999999999999999999999986
No 26
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=99.19 E-value=3.4e-11 Score=95.28 Aligned_cols=61 Identities=31% Similarity=0.381 Sum_probs=55.1
Q ss_pred CcEEEEe-CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcE
Q psy16959 1 GATIRNE-GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQE 61 (366)
Q Consensus 1 G~~i~~~-~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v 61 (366)
|++|..+ .+.+||+++.+||+|+++|.|++||.|++|||+++.+++|++++++|+..+...
T Consensus 19 G~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~ 80 (95)
T 3gge_A 19 GLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEE 80 (95)
T ss_dssp CEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTC
T ss_pred eEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCC
Confidence 7888753 467899999999999999999999999999999999999999999999976633
No 27
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.19 E-value=1.3e-10 Score=123.31 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=52.0
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.|++|..|.+||+|+++|.|+.||+|++|||.++.+.++.++..+++.....+.+.
T Consensus 184 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~ 239 (721)
T 2xkx_A 184 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLK 239 (721)
T ss_pred CceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcCCCeEEEE
Confidence 58999999999999999999999999999999999999999999998877777665
No 28
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.03 E-value=3.5e-10 Score=87.25 Aligned_cols=52 Identities=29% Similarity=0.308 Sum_probs=48.7
Q ss_pred EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
+|.++.+||||+++| |+.||+|++|||+++.+++|++++.+|+.+.++++|.
T Consensus 26 ~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~L~ 77 (82)
T 1r6j_A 26 KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT 77 (82)
T ss_dssp EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEE
Confidence 478999999999999 9999999999999999999999999999878888775
No 29
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=98.99 E-value=1.8e-09 Score=84.09 Aligned_cols=57 Identities=30% Similarity=0.426 Sum_probs=54.2
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEee
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMG 65 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~~ 65 (366)
++++|..|.+||||+++|.|+.||+|++|||.++.+++++++..+|+++.+++++..
T Consensus 21 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v 77 (88)
T 3e17_A 21 SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVV 77 (88)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence 479999999999999999999999999999999999999999999999999998874
No 30
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.99 E-value=5.5e-09 Score=93.55 Aligned_cols=81 Identities=31% Similarity=0.494 Sum_probs=65.6
Q ss_pred CCCCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCCCCcceeecCHHHHHHHHHhcceeEEEEEec--c
Q psy16959 101 SNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEK--S 178 (366)
Q Consensus 101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~~g~~y~~vs~~ef~~~~~~g~fle~~~~~g--~ 178 (366)
.....+++|+||+|||||||++.|+..........++++++|+.++..++.|.|.+...|..+...+.|.++.++.+ .
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~ 96 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLH 96 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchh
Confidence 34567899999999999999999986533344556788888887888899999999999988888888888887776 6
Q ss_pred ccc
Q psy16959 179 YYG 181 (366)
Q Consensus 179 ~YG 181 (366)
.||
T Consensus 97 ~~g 99 (207)
T 1znw_A 97 RSG 99 (207)
T ss_dssp EEE
T ss_pred hcC
Confidence 677
No 31
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=98.97 E-value=1.5e-09 Score=85.01 Aligned_cols=64 Identities=42% Similarity=0.699 Sum_probs=57.9
Q ss_pred CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+|+...+.+++.
T Consensus 18 G~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 83 (93)
T 3o46_A 18 GATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFK 83 (93)
T ss_dssp CEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEEE
T ss_pred cEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 5666655 578999999999999999999999999999999999999999999999988877776
No 32
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=98.92 E-value=1.9e-09 Score=83.93 Aligned_cols=64 Identities=34% Similarity=0.592 Sum_probs=55.3
Q ss_pred CcEEEEe-CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE-GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~-~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... .++++|..|.++|||++++.|++||+|++|||.++.+++++++..+|+...+.+++.
T Consensus 16 G~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~ 80 (88)
T 1kwa_A 16 GITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFK 80 (88)
T ss_dssp CEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEE
T ss_pred eEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEE
Confidence 5677653 467999999999999994449999999999999999999999999999988766665
No 33
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=98.88 E-value=7.4e-09 Score=80.56 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=56.4
Q ss_pred CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++| |++||.|++|||.++.+++++++..+++...+++.++
T Consensus 17 G~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~ 81 (91)
T 1g9o_A 17 GFHLHGEKGKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL 81 (91)
T ss_dssp CEEEEECTTCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred cEEEEecCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEE
Confidence 56665543 589999999999999999 9999999999999999999999999999988887766
No 34
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=98.88 E-value=6.6e-09 Score=83.92 Aligned_cols=64 Identities=22% Similarity=0.450 Sum_probs=55.8
Q ss_pred CcEEEEe-----CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC---CCcEEEe
Q psy16959 1 GATIRNE-----GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL---TGQEMTM 64 (366)
Q Consensus 1 G~~i~~~-----~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~---~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++|.|++||+|++|||+++.++++++++.+|+.. .+.+.|.
T Consensus 20 G~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~ 91 (108)
T 3cbz_A 20 GISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLT 91 (108)
T ss_dssp CEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEE
T ss_pred CEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEE
Confidence 5566543 46899999999999999999999999999999999999999999999876 4567766
No 35
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=98.86 E-value=6.9e-09 Score=85.40 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=52.8
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+...+++++.
T Consensus 53 ~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~ 108 (118)
T 3b76_A 53 LPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLK 108 (118)
T ss_dssp CCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCSEEEEE
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 47999999999999999999999999999999999999999999999988887775
No 36
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=98.85 E-value=5.3e-09 Score=84.39 Aligned_cols=64 Identities=17% Similarity=0.358 Sum_probs=57.7
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.....+++|..|.+||||+++|.|++||+|++|||.++.+++++++..+++...+++.+.
T Consensus 17 G~~i~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~ 80 (106)
T 2la8_A 17 GLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSME 80 (106)
T ss_dssp CCEEEECSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Confidence 5566555678999999999999999999999999999999999999999999999988888776
No 37
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=98.85 E-value=3.7e-09 Score=84.09 Aligned_cols=64 Identities=31% Similarity=0.532 Sum_probs=56.5
Q ss_pred CcEEEEe-CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE-GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~-~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... .++++|..|.++|||+++|.|++||.|++|||.++.+++++++..+|+...+.+.+.
T Consensus 27 G~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~L~ 91 (97)
T 2ejy_A 27 GICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLK 91 (97)
T ss_dssp SEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEEEE
T ss_pred eEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 5677653 468999999999999999999999999999999999999999999999876666664
No 38
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=98.85 E-value=5.9e-09 Score=82.32 Aligned_cols=64 Identities=17% Similarity=0.353 Sum_probs=56.9
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.....+++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+++...+++.+.
T Consensus 23 G~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l~ 86 (96)
T 2qkv_A 23 GLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSME 86 (96)
T ss_dssp CEEEEECSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred cEEEEeCCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEE
Confidence 4555555578999999999999999989999999999999999999999999999988887776
No 39
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=7.8e-09 Score=80.87 Aligned_cols=63 Identities=33% Similarity=0.650 Sum_probs=56.6
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.....+++|..|.++|||+++|.|++||+|++|||.++ +.+++++..+|+...+.+.+.
T Consensus 21 G~~i~~~~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v~l~ 83 (91)
T 2e7k_A 21 GVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILK 83 (91)
T ss_dssp CEEEEESSSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSBCEE
T ss_pred eEEEEecCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeEEEE
Confidence 667777678999999999999999887999999999999999 999999999999877776665
No 40
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=98.84 E-value=5.9e-09 Score=81.75 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=55.7
Q ss_pred CcEEEEeCC--eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEGD--AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~--gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++..... +++|..|.++|||+++| |++||+|++|||.++.+++++++..+|+...+.+.++
T Consensus 19 G~~l~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~ 83 (95)
T 3r68_A 19 GFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLL 83 (95)
T ss_dssp SCEEEEC--CCSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEE
T ss_pred cEEEEecCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 566665443 89999999999999999 9999999999999999999999999999988887776
No 41
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.82 E-value=2e-10 Score=106.67 Aligned_cols=56 Identities=11% Similarity=0.232 Sum_probs=44.2
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccCCcceee---------eccCCCCCCCCCCCcceeecCHHHH
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAI---------PHTSRPMKDGEVDGQDYHFITRAQF 160 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~---------~~tTr~pr~~E~~g~~y~~vs~~ef 160 (366)
++++|+||+|||||||+..|++.++...+.. +.+|++|+..|..+++|+|++..++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~ 66 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPL 66 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeecc
Confidence 4689999999999999999998654322222 4568899889999999999886554
No 42
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=98.82 E-value=7.9e-09 Score=90.53 Aligned_cols=56 Identities=25% Similarity=0.438 Sum_probs=52.9
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.+||||+++|+|++||+|++|||.++.++++++++.+|+++.+.++|+
T Consensus 111 ~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g~~v~L~ 166 (170)
T 3egg_C 111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFM 166 (170)
T ss_dssp BEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCCSEEEEE
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence 57999999999999999999999999999999999999999999999988887775
No 43
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=98.79 E-value=1.2e-08 Score=84.20 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=51.9
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.++++++++.+++...+++++.
T Consensus 53 ~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~v~l~ 108 (120)
T 2iwo_A 53 VPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQ 108 (120)
T ss_dssp EEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEE
T ss_pred CCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 37999999999999999449999999999999999999999999999988887776
No 44
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=98.79 E-value=1.6e-08 Score=84.83 Aligned_cols=54 Identities=26% Similarity=0.329 Sum_probs=50.9
Q ss_pred eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
+++|..|.++|||+++| |+.||+|++|||.++.++++++++.+|+.....+.+.
T Consensus 66 gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~ 119 (132)
T 3l4f_D 66 LQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 119 (132)
T ss_dssp SEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCHHHHHHHHHHTTTEEEEE
T ss_pred CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence 69999999999999999 9999999999999999999999999999977777765
No 45
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.78 E-value=1.3e-08 Score=81.80 Aligned_cols=57 Identities=26% Similarity=0.472 Sum_probs=52.8
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++.....+.+.
T Consensus 39 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 95 (107)
T 1wf8_A 39 KLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFV 95 (107)
T ss_dssp EEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEE
T ss_pred CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEE
Confidence 358999999999999999999999999999999999999999999999887777776
No 46
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=98.78 E-value=2.2e-08 Score=80.53 Aligned_cols=56 Identities=20% Similarity=0.388 Sum_probs=52.6
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+++...+.+.+.
T Consensus 32 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~ 87 (106)
T 4amh_A 32 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLK 87 (106)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEE
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Confidence 38999999999999999999999999999999999999999999999988887776
No 47
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=98.78 E-value=2e-08 Score=78.01 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=55.0
Q ss_pred CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++| |++||+|++|||.++.+.+++++..+|+.....+.+.
T Consensus 18 G~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 82 (90)
T 2he4_A 18 GFNLHSDKSRPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL 82 (90)
T ss_dssp CEEEEECSSSSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEE
T ss_pred cEEEEccCCCCCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEE
Confidence 55665443 489999999999999999 9999999999999999999999999999876666665
No 48
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.78 E-value=1.4e-08 Score=83.07 Aligned_cols=55 Identities=31% Similarity=0.518 Sum_probs=52.1
Q ss_pred eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+.....+.+.
T Consensus 50 g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~ 104 (117)
T 1ujd_A 50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEIC 104 (117)
T ss_dssp EEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999987887776
No 49
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=98.77 E-value=1.6e-08 Score=80.95 Aligned_cols=63 Identities=32% Similarity=0.521 Sum_probs=55.5
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhccc-CCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRT-GLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~-G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++ | |++||+|++|||.++.+++++++..+++...++++|.
T Consensus 24 G~~l~~g~~~~~~~~V~~V~~~s~A~~a~g-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~l~ 90 (103)
T 2dc2_A 24 GISITGGKEHGVPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFE 90 (103)
T ss_dssp CEEEEEEGGGTEEEEEEEECTTSHHHHHTC-CCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEEEE
T ss_pred CEEEEeccCCCCCEEEEEECCCCHHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 5566543 247999999999999996 6 9999999999999999999999999999988888876
No 50
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=98.77 E-value=2.3e-08 Score=81.98 Aligned_cols=56 Identities=21% Similarity=0.380 Sum_probs=52.1
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus 54 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~ 109 (117)
T 2byg_A 54 NSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLK 109 (117)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 47999999999999999999999999999999999999999999999877777665
No 51
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=98.77 E-value=1.5e-08 Score=78.93 Aligned_cols=64 Identities=34% Similarity=0.540 Sum_probs=55.8
Q ss_pred CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+++...+.+.+.
T Consensus 19 G~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 84 (92)
T 2qg1_A 19 GLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLE 84 (92)
T ss_dssp SEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEE
T ss_pred cEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 4556533 358999999999999999999999999999999999999999999999877777665
No 52
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.77 E-value=1e-08 Score=82.69 Aligned_cols=57 Identities=23% Similarity=0.399 Sum_probs=51.4
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC-CcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT-GQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~-~~v~l~ 64 (366)
..+++|..|.++|||+++|.|++||+|++|||.++.++++++++.+|+... +.+.+.
T Consensus 43 ~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~ 100 (108)
T 2d92_A 43 RSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLG 100 (108)
T ss_dssp CEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEE
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEE
Confidence 457999999999999999999999999999999999999999999999864 455554
No 53
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.77 E-value=1.7e-08 Score=82.09 Aligned_cols=64 Identities=59% Similarity=0.970 Sum_probs=56.8
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.....+++|..|.++|||+++|.|++||+|++|||..+.+++++++..+|+...+.+.+.
T Consensus 40 G~~i~~~~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~ 103 (113)
T 1va8_A 40 GATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFV 103 (113)
T ss_dssp CEEEEECSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEE
T ss_pred eEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 5666666678999999999999999944999999999999999999999999999887777765
No 54
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=98.77 E-value=1.8e-08 Score=82.65 Aligned_cols=56 Identities=29% Similarity=0.410 Sum_probs=52.5
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++...+++.+.
T Consensus 53 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~ 108 (117)
T 2fne_A 53 LPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLM 108 (117)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEE
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 47999999999999999999999999999999999999999999999888887765
No 55
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=98.77 E-value=2.2e-08 Score=80.16 Aligned_cols=56 Identities=20% Similarity=0.389 Sum_probs=52.0
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+.++.++...++.....+.+.
T Consensus 33 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 88 (105)
T 2awx_A 33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLK 88 (105)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCCSEEEEE
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 48999999999999999999999999999999999999999999999877777665
No 56
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.76 E-value=2.5e-08 Score=81.65 Aligned_cols=64 Identities=23% Similarity=0.459 Sum_probs=56.1
Q ss_pred CcEEEEe---C-CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE---G-DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~-~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... + .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+.....+.+.
T Consensus 30 G~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~ 97 (117)
T 1v62_A 30 GISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLE 97 (117)
T ss_dssp CCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEE
T ss_pred cEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 5666643 2 35999999999999999999999999999999999999999999999877777776
No 57
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=98.76 E-value=1.6e-08 Score=77.96 Aligned_cols=55 Identities=31% Similarity=0.488 Sum_probs=50.3
Q ss_pred CeEEEEEEcCCchhcc-cCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADR-TGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~-~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||++ +| |++||+|++|||.++.+++++++..+++...+.+.+.
T Consensus 28 ~~~~V~~V~~gspA~~~ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 83 (87)
T 4e34_A 28 VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFE 83 (87)
T ss_dssp EEEEEEEECTTSHHHHHSC-CCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEEEE
T ss_pred CCEEEEEECCCCHHHhcCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 4699999999999999 57 9999999999999999999999999999887777664
No 58
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=98.75 E-value=3.3e-08 Score=77.94 Aligned_cols=64 Identities=30% Similarity=0.444 Sum_probs=56.2
Q ss_pred CcEEEEeC----CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG----DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~----~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++|.|++||+|++|||.++.+++++++...++.....+.+.
T Consensus 18 G~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 85 (98)
T 2opg_A 18 GLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLT 85 (98)
T ss_dssp CEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred cEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 56666443 58999999999999999999999999999999999999999999999877766665
No 59
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=98.75 E-value=3.4e-08 Score=76.14 Aligned_cols=63 Identities=22% Similarity=0.233 Sum_probs=54.8
Q ss_pred CcEEEEeC---CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG---DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~---~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++| |++||.|++|||.++.+++++++..+|+.....+.+.
T Consensus 15 G~~l~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 80 (87)
T 2pa1_A 15 GFRITGGRDFHTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQ 80 (87)
T ss_dssp SEEEEEEGGGTEEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEE
T ss_pred CEEEecccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 55665432 489999999999999999 9999999999999999999999999999877676664
No 60
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=98.75 E-value=1.8e-08 Score=81.72 Aligned_cols=57 Identities=25% Similarity=0.424 Sum_probs=53.0
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++.....+.+.
T Consensus 34 ~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 90 (113)
T 2g5m_B 34 KLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFM 90 (113)
T ss_dssp CEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSCSSCEEE
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEE
Confidence 458999999999999999999999999999999999999999999999887777776
No 61
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=98.75 E-value=2.7e-08 Score=78.24 Aligned_cols=64 Identities=30% Similarity=0.495 Sum_probs=55.3
Q ss_pred CcEEEEe-------CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE-------GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~-------~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+.....+.+.
T Consensus 17 G~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~ 87 (97)
T 2jil_A 17 GFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALL 87 (97)
T ss_dssp SEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEE
T ss_pred CEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 5566543 358999999999999999989999999999999999999999999999866666655
No 62
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=98.75 E-value=2.7e-08 Score=79.75 Aligned_cols=57 Identities=28% Similarity=0.405 Sum_probs=52.6
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus 37 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~ 93 (106)
T 3axa_A 37 KLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLE 93 (106)
T ss_dssp SEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 358999999999999999999999999999999999999999999998877777776
No 63
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=98.75 E-value=2.3e-08 Score=78.87 Aligned_cols=64 Identities=36% Similarity=0.562 Sum_probs=55.3
Q ss_pred CcEEEEeC---CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG---DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~---~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus 19 G~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~ 85 (97)
T 1n7e_A 19 GITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLK 85 (97)
T ss_dssp CEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred CEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 56665433 68999999999999999989999999999999999999999999999666666665
No 64
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=98.75 E-value=2.9e-08 Score=77.08 Aligned_cols=64 Identities=23% Similarity=0.361 Sum_probs=54.7
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++|.|++||+|++|||.++.++++.++...++.....+.+.
T Consensus 19 G~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v~l~ 85 (90)
T 1qav_A 19 GISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLE 85 (90)
T ss_dssp CEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred CEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 5566543 357999999999999999339999999999999999999999999999877776664
No 65
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=98.74 E-value=2.7e-08 Score=79.23 Aligned_cols=64 Identities=27% Similarity=0.448 Sum_probs=56.3
Q ss_pred CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++|.|++||+|++|||.++.+.++.++...++.....+.+.
T Consensus 25 G~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 90 (104)
T 3i4w_A 25 GFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII 90 (104)
T ss_dssp SEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEE
T ss_pred CEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 55665433 38999999999999999999999999999999999999999999999877777765
No 66
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.74 E-value=1.1e-08 Score=85.32 Aligned_cols=64 Identities=20% Similarity=0.447 Sum_probs=54.6
Q ss_pred CcEEEEe------CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCc-EEEe
Q psy16959 1 GATIRNE------GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMTM 64 (366)
Q Consensus 1 G~~i~~~------~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~-v~l~ 64 (366)
|++|... ..+++|..|.+||||+++|.|++||+|++|||+++.++++++++.+|+...+. +.+.
T Consensus 43 G~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~ 113 (130)
T 1i16_A 43 GFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIV 113 (130)
T ss_dssp TEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEE
T ss_pred CEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEE
Confidence 5666532 24799999999999999955999999999999999999999999999998776 5554
No 67
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=98.74 E-value=2.5e-08 Score=83.01 Aligned_cols=56 Identities=41% Similarity=0.722 Sum_probs=52.4
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+|+...+.+.+.
T Consensus 65 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~ 120 (128)
T 1nf3_C 65 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIIT 120 (128)
T ss_dssp EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHTTTSEEEE
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 47999999999999999988999999999999999999999999999888887775
No 68
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=98.73 E-value=3.8e-08 Score=77.17 Aligned_cols=64 Identities=22% Similarity=0.376 Sum_probs=55.8
Q ss_pred CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++|.|++||+|++|||.++.+.++.++...++.....+.+.
T Consensus 19 G~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 84 (95)
T 2vwr_A 19 GIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLT 84 (95)
T ss_dssp CEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEE
T ss_pred cEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence 4566432 358999999999999999999999999999999999999999999998877777665
No 69
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=98.73 E-value=3.5e-08 Score=79.51 Aligned_cols=54 Identities=26% Similarity=0.329 Sum_probs=49.9
Q ss_pred eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
+++|..|.++|||+++| |+.||+|++|||.++.+++++++..+++.....+.+.
T Consensus 46 gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~ 99 (109)
T 1q3o_A 46 LQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 99 (109)
T ss_dssp SEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEE
T ss_pred CEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEE
Confidence 79999999999999999 9999999999999999999999999999876666654
No 70
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=98.73 E-value=1.3e-08 Score=84.63 Aligned_cols=56 Identities=25% Similarity=0.401 Sum_probs=51.4
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC-------CCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL-------TGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~-------~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||+++.++++++++.+|+.+ .+.++|.
T Consensus 55 ~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~ 117 (127)
T 1wg6_A 55 LGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLV 117 (127)
T ss_dssp EEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEE
Confidence 4799999999999999999999999999999999999999999999875 5667665
No 71
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=98.72 E-value=3.9e-08 Score=78.16 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=52.4
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++|.|++||+|++|||.++.++++.++...++.....+.+.
T Consensus 33 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 89 (102)
T 2i1n_A 33 DPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLV 89 (102)
T ss_dssp CCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEE
T ss_pred CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 358999999999999999999999999999999999999999999999877777665
No 72
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.72 E-value=1.6e-08 Score=81.88 Aligned_cols=58 Identities=28% Similarity=0.408 Sum_probs=51.7
Q ss_pred CcEEEEe-----CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC
Q psy16959 1 GATIRNE-----GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT 58 (366)
Q Consensus 1 G~~i~~~-----~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~ 58 (366)
|+++... ..+++|..|.++|||+++|.|++||+|++|||+++.++++++++.+|+.+.
T Consensus 28 G~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~ 90 (109)
T 1wi4_A 28 GLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAK 90 (109)
T ss_dssp CEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSC
T ss_pred CEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccc
Confidence 5666531 237999999999999999999999999999999999999999999999876
No 73
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=98.72 E-value=3.7e-08 Score=78.37 Aligned_cols=64 Identities=22% Similarity=0.379 Sum_probs=53.7
Q ss_pred CcEEEEeCC-----eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc--CCCcEEEe
Q psy16959 1 GATIRNEGD-----AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG--LTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~-----gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~--~~~~v~l~ 64 (366)
|+++...+. +++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+|+. ....+.+.
T Consensus 24 G~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~ 94 (101)
T 2yt7_A 24 GVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLS 94 (101)
T ss_dssp CEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEE
T ss_pred CEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence 566754333 59999999999999966699999999999999999999999999988 44555554
No 74
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=98.72 E-value=4e-08 Score=77.92 Aligned_cols=56 Identities=25% Similarity=0.362 Sum_probs=51.4
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++.....+.+.
T Consensus 37 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 92 (101)
T 2jik_A 37 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLR 92 (101)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 58999999999999999989999999999999999999999999998876666665
No 75
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=98.71 E-value=4.3e-08 Score=77.34 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=54.1
Q ss_pred CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++| |++||+|++|||.++.+++++++..+|+...+....+
T Consensus 23 G~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l 87 (98)
T 2jxo_A 23 GFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLL 87 (98)
T ss_dssp CEEEECCCSSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEE
T ss_pred cEEEEecCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 45565433 489999999999999999 9999999999999999999999999999887665533
No 76
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=98.71 E-value=3.9e-08 Score=77.18 Aligned_cols=56 Identities=23% Similarity=0.449 Sum_probs=51.4
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus 33 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~ 88 (96)
T 1d5g_A 33 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLL 88 (96)
T ss_dssp SCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEE
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 58999999999999999989999999999999999999999999999876666665
No 77
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=98.71 E-value=5.5e-08 Score=74.55 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=52.9
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEE
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMT 63 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l 63 (366)
|+++... ..+++|..|.++|||+++|.|++||.|++|||.++.+++++++..+|+.. ...+.+
T Consensus 14 G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l 81 (85)
T 2i04_A 14 GFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDL 81 (85)
T ss_dssp SEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEE
T ss_pred CEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEE
Confidence 4555542 23599999999999999998999999999999999999999999999886 344544
No 78
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=98.71 E-value=5e-08 Score=77.58 Aligned_cols=56 Identities=21% Similarity=0.429 Sum_probs=51.1
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+...+.+.+.
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 94 (103)
T 2fcf_A 39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFM 94 (103)
T ss_dssp --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEE
T ss_pred CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 57999999999999999989999999999999999999999999999887777765
No 79
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=98.71 E-value=4.5e-08 Score=76.91 Aligned_cols=63 Identities=19% Similarity=0.273 Sum_probs=54.2
Q ss_pred CcEEEEeC-----CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG-----DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~-----~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++| |++||+|++|||.++.+++++++..+++.....+.+.
T Consensus 17 G~~l~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~ 84 (96)
T 2v90_A 17 GFLLREEKGLDGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLT 84 (96)
T ss_dssp CEEEEEEECTTSCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEE
T ss_pred cEEEEeccCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence 56665432 279999999999999999 9999999999999999999999999999875666655
No 80
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=98.70 E-value=4.5e-08 Score=80.89 Aligned_cols=56 Identities=25% Similarity=0.370 Sum_probs=52.6
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.+||||+++|.|+.||+|++|||.++.+++++++..+++...+.+++.
T Consensus 45 ~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 100 (125)
T 3hpk_A 45 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 100 (125)
T ss_dssp SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 46899999999999999999999999999999999999999999999988887766
No 81
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=98.70 E-value=5.4e-08 Score=76.01 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=51.5
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+.++.++..+++...+.+.+.
T Consensus 33 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 88 (94)
T 2fe5_A 33 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLK 88 (94)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 48999999999999999989999999999999999999999999999877766664
No 82
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.69 E-value=4.1e-08 Score=78.85 Aligned_cols=57 Identities=19% Similarity=0.348 Sum_probs=52.1
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++|.|++||+|++|||.++.++++.+++.+++...+.+.+.
T Consensus 40 ~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 96 (107)
T 1uhp_A 40 SEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQ 96 (107)
T ss_dssp SCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEE
T ss_pred CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEE
Confidence 458999999999999999339999999999999999999999999999888888776
No 83
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=98.69 E-value=5e-08 Score=75.53 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=54.0
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++.....+.+.
T Consensus 16 G~~l~gg~~~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~ 81 (89)
T 2q3g_A 16 GFRLQGGKDFNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLG 81 (89)
T ss_dssp CEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEE
T ss_pred cEEEECcCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEE
Confidence 5566532 3579999999999999999 9999999999999999999999999998876666554
No 84
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=4.1e-08 Score=76.57 Aligned_cols=64 Identities=30% Similarity=0.605 Sum_probs=55.0
Q ss_pred CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.. ...+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++...+.+.+.
T Consensus 19 G~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 85 (93)
T 2dkr_A 19 GFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLV 85 (93)
T ss_dssp CEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEEEEE
T ss_pred cEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 456653 2468999999999999999559999999999999999999999999999877776665
No 85
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=98.68 E-value=7.3e-08 Score=76.87 Aligned_cols=63 Identities=29% Similarity=0.318 Sum_probs=56.6
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc---CCCcEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG---LTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~---~~~~v~l~ 64 (366)
|+.+...+.+.+|..|.+||||+++| |++||.|++|||..+...+.+++...++. ..+.+.|+
T Consensus 31 G~~l~~~~~~~~I~~V~~gSpA~~AG-L~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LL 96 (101)
T 3qik_A 31 GFDIEEKNKAVVVKSVQRGSLAEVAG-LQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLL 96 (101)
T ss_dssp SEEEEEETTEEEEEEECTTSHHHHHT-CCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEccCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEE
Confidence 56777777889999999999999999 99999999999999988999999999986 47777776
No 86
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=98.68 E-value=7.8e-08 Score=78.02 Aligned_cols=64 Identities=27% Similarity=0.371 Sum_probs=55.7
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++|.|++||+|++|||.++.+.++.++..+++.....+.+.
T Consensus 38 G~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~ 104 (112)
T 2r4h_A 38 GFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLF 104 (112)
T ss_dssp SEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEE
T ss_pred CEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 5666543 458999999999999999989999999999999999999999999998876766665
No 87
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=98.68 E-value=6.3e-08 Score=76.18 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=50.7
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++| |++||+|++|||.++.+++++++..+|+...+.+.+.
T Consensus 37 ~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 91 (96)
T 2ego_A 37 MVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLE 91 (96)
T ss_dssp EEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEE
T ss_pred CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 378999999999999999 9999999999999999999999999999887766664
No 88
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=98.67 E-value=6.6e-08 Score=78.03 Aligned_cols=64 Identities=28% Similarity=0.503 Sum_probs=54.7
Q ss_pred CcEEEEeC------CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 1 GATIRNEG------DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~------~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+|+.. ...+.+.
T Consensus 25 G~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~ 96 (111)
T 2koj_A 25 GFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLL 96 (111)
T ss_dssp CEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEE
T ss_pred CEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence 56666443 5799999999999999998999999999999999999999999999875 4555554
No 89
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=98.67 E-value=3.2e-08 Score=76.75 Aligned_cols=64 Identities=28% Similarity=0.510 Sum_probs=54.3
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC--cEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG--QEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~--~v~l~ 64 (366)
|+++... +.+++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+++.... .+.+.
T Consensus 16 G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~ 84 (90)
T 2q9v_A 16 GFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLT 84 (90)
T ss_dssp CEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEE
T ss_pred CEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence 5566532 2579999999999999999999999999999999999999999999987643 56654
No 90
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.67 E-value=2.2e-08 Score=79.96 Aligned_cols=64 Identities=36% Similarity=0.609 Sum_probs=54.7
Q ss_pred CcEEEE---eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 1 GATIRN---EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 1 G~~i~~---~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
|+++.. ...+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+.. ...+.+.
T Consensus 23 G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~ 91 (103)
T 1uep_A 23 GFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLT 91 (103)
T ss_dssp CEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEE
T ss_pred CEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 455543 235799999999999999999999999999999999999999999999886 4666665
No 91
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.67 E-value=5e-08 Score=79.62 Aligned_cols=56 Identities=20% Similarity=0.405 Sum_probs=52.6
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.++++++++.+++.....+.+.
T Consensus 50 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 105 (117)
T 2ehr_A 50 KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFI 105 (117)
T ss_dssp CSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHTSCSSEEEE
T ss_pred CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 48999999999999999989999999999999999999999999999887787776
No 92
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=98.67 E-value=5.3e-08 Score=75.85 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=53.4
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.. ..+++|..|.++|||+++| |+.||.|++|||.++.+++++++..+++...+.+.+.
T Consensus 17 G~~l~~-~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~ 78 (91)
T 2f5y_A 17 GFTICC-DSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILL 78 (91)
T ss_dssp SEEEEC-SSSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred cEEEec-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 444543 3568999999999999999 9999999999999999999999999998877766665
No 93
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=98.66 E-value=6.8e-08 Score=80.76 Aligned_cols=55 Identities=35% Similarity=0.522 Sum_probs=50.8
Q ss_pred eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM 64 (366)
Q Consensus 10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~ 64 (366)
++||..|.++|||+++|.|++||+|++|||.++.+++++++..+|+.+. ..+.+.
T Consensus 66 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~ 122 (131)
T 1wfg_A 66 CAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELV 122 (131)
T ss_dssp EEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEE
T ss_pred CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 8999999999999999999999999999999999999999999998874 566665
No 94
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=98.66 E-value=5e-08 Score=77.95 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=50.9
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++| |++||+|++|||.++.+++++++..+|+...+.+.+.
T Consensus 48 ~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~ 102 (104)
T 2z17_A 48 MFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIE 102 (104)
T ss_dssp CCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCHHHHHHHHHHTTTEEEEE
T ss_pred CCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCcEEEE
Confidence 589999999999999999 9999999999999999999999999999887766653
No 95
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.66 E-value=9.2e-08 Score=74.27 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=53.9
Q ss_pred CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++| |++||+|++|||..+.+.++.++..+++.....+.+.
T Consensus 22 G~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 86 (91)
T 1m5z_A 22 GFSVADGLLEKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLV 86 (91)
T ss_dssp SEEEEECTTSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEE
T ss_pred cEEEEeccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence 4556543 3589999999999999999 9999999999999999999999999998766666654
No 96
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=98.65 E-value=9.1e-08 Score=74.37 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=53.8
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++| |++||+|++|||.++.+.++.++..+++.....+.+.
T Consensus 16 G~~l~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~ 81 (91)
T 2pkt_A 16 GFRLVGGKDFEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLT 81 (91)
T ss_dssp SEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred CEEEEccCCCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 4556543 2489999999999999999 9999999999999999999999999999855666654
No 97
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=98.65 E-value=9.6e-08 Score=73.68 Aligned_cols=63 Identities=22% Similarity=0.363 Sum_probs=53.7
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++| |++||+|++|||.++.+.+++++..+++.....+.+.
T Consensus 16 G~~l~~g~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~ 81 (88)
T 2uzc_A 16 GFRLQGGKDFNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMT 81 (88)
T ss_dssp CEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred cEEEECcCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 4556532 3479999999999999999 9999999999999999999999999998876666554
No 98
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.65 E-value=6.9e-08 Score=77.82 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=52.4
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++|.|++||+|++|||.++.++++.++...++.....+.+.
T Consensus 35 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 91 (110)
T 1um1_A 35 APGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFL 91 (110)
T ss_dssp CSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEEEE
T ss_pred CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 358999999999999999999999999999999999999999999999877777665
No 99
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=5.9e-08 Score=79.61 Aligned_cols=57 Identities=25% Similarity=0.356 Sum_probs=52.2
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus 46 ~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 102 (120)
T 2eno_A 46 DSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLR 102 (120)
T ss_dssp CCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHCSEEEEE
T ss_pred CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 458999999999999999999999999999999999999999999998776676665
No 100
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.65 E-value=4.1e-08 Score=78.57 Aligned_cols=56 Identities=27% Similarity=0.520 Sum_probs=52.2
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus 38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~ 93 (105)
T 1wha_A 38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALL 93 (105)
T ss_dssp CSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEE
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 58999999999999999999999999999999999999999999999877777765
No 101
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=98.65 E-value=6.7e-08 Score=76.96 Aligned_cols=55 Identities=25% Similarity=0.357 Sum_probs=49.1
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC-cEEE
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG-QEMT 63 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~-~v~l 63 (366)
..+++|..|.++|||+++| |++||+|++|||.++.+.+++++...++...+ .+.+
T Consensus 44 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l 99 (104)
T 3sfj_A 44 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRL 99 (104)
T ss_dssp CCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEE
T ss_pred CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEE
Confidence 4579999999999999999 99999999999999999999999999987654 4444
No 102
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.64 E-value=6.5e-08 Score=80.32 Aligned_cols=57 Identities=23% Similarity=0.377 Sum_probs=52.6
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+.....+.+.
T Consensus 45 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~ 101 (129)
T 2dmz_A 45 ASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLT 101 (129)
T ss_dssp CCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHCCSSEEEE
T ss_pred CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 468999999999999999999999999999999999999999999999866777665
No 103
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=98.64 E-value=8.8e-08 Score=79.23 Aligned_cols=56 Identities=21% Similarity=0.429 Sum_probs=52.5
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+...+.+.+.
T Consensus 59 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~ 114 (123)
T 2iwq_A 59 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFM 114 (123)
T ss_dssp CSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEE
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 57999999999999999999999999999999999999999999999887777776
No 104
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=98.64 E-value=8.4e-08 Score=75.57 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=50.6
Q ss_pred eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
+++|..|.++|||+++|.|++||+|++|||.++.+.++.++..+++.....+.+.
T Consensus 38 g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~ 92 (98)
T 1ihj_A 38 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELE 92 (98)
T ss_dssp EEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEE
Confidence 8999999999999999989999999999999999999999999998866666654
No 105
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=98.63 E-value=9.6e-08 Score=74.99 Aligned_cols=56 Identities=29% Similarity=0.538 Sum_probs=50.6
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++| |++||+|++|||.++.+.++.++...++.....+.+.
T Consensus 33 ~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~ 88 (97)
T 2w4f_A 33 DEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR 88 (97)
T ss_dssp BCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEE
T ss_pred CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCCCCeEEEE
Confidence 4689999999999999999 9999999999999999999999888888766666665
No 106
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.63 E-value=4.3e-08 Score=78.50 Aligned_cols=47 Identities=32% Similarity=0.514 Sum_probs=45.0
Q ss_pred EEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC
Q psy16959 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL 57 (366)
Q Consensus 11 i~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~ 57 (366)
++|..|.++|||+++|.|++||+|++|||.++.++++++++.+|+.+
T Consensus 34 ~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~ 80 (103)
T 1ufx_A 34 PRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEA 80 (103)
T ss_dssp CEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHH
T ss_pred EEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHh
Confidence 49999999999999999999999999999999999999999999874
No 107
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=98.62 E-value=1.2e-07 Score=74.25 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=49.4
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||++ | |++||+|++|||.++.++++.++...++.....+.+.
T Consensus 35 ~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 88 (95)
T 1mfg_A 35 DGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELI 88 (95)
T ss_dssp CCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEE
T ss_pred CCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCHHHHHHHhhcCCCeEEEE
Confidence 5899999999999999 8 9999999999999999999999999998777776665
No 108
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=98.62 E-value=9.6e-08 Score=74.78 Aligned_cols=57 Identities=16% Similarity=0.354 Sum_probs=51.4
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++.....+.+.
T Consensus 32 ~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 88 (97)
T 2iwn_A 32 PSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLT 88 (97)
T ss_dssp CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEE
T ss_pred CCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 458999999999999999989999999999999999999999999998866666654
No 109
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=98.62 E-value=9.7e-08 Score=76.51 Aligned_cols=56 Identities=32% Similarity=0.365 Sum_probs=50.6
Q ss_pred CeEEEEEEcCCchhcccC-CCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC----cEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTG-LLHEGDEILEINGIEIRGKSIHIVCDILVGLTG----QEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G-~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~----~v~l~ 64 (366)
.+++|..|.++|||+++| +|++||+|++|||.++.+++++++..+++...+ .+.+.
T Consensus 43 ~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~ 103 (107)
T 3nfk_A 43 MPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLL 103 (107)
T ss_dssp EEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEE
T ss_pred CCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEE
Confidence 468999999999999999 499999999999999999999999999998764 66654
No 110
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.62 E-value=5.8e-08 Score=80.19 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=52.4
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++...+.+.+.
T Consensus 51 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~ 106 (124)
T 2daz_A 51 MSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLV 106 (124)
T ss_dssp CCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSEEEEE
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 58999999999999999999999999999999999999999999998887777776
No 111
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=98.62 E-value=9.9e-08 Score=76.44 Aligned_cols=53 Identities=34% Similarity=0.587 Sum_probs=49.2
Q ss_pred EEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 11 i~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
++|..|.++|||+++| |+.||+|++|||.++.+++++++..+|+.....+.+.
T Consensus 45 ~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~ 97 (107)
T 3qe1_A 45 QHVSAVLPGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELILT 97 (107)
T ss_dssp EEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEE
T ss_pred eEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence 4799999999999999 9999999999999999999999999999877777765
No 112
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=98.62 E-value=5.1e-08 Score=78.30 Aligned_cols=56 Identities=18% Similarity=0.350 Sum_probs=50.9
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus 44 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~ 99 (108)
T 2jre_A 44 TGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLL 99 (108)
T ss_dssp CCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHHHCSEEEEE
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 48999999999999999999999999999999999999999999998766666655
No 113
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=98.61 E-value=5.9e-08 Score=80.54 Aligned_cols=55 Identities=31% Similarity=0.369 Sum_probs=51.6
Q ss_pred eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcC-CCCHHHHHHHHHcCCCcEEEe
Q psy16959 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR-GKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~-~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
+++|..|.++|||+++|.|++||+|++|||.++. +++++++..+|+.....+.|.
T Consensus 55 gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~ 110 (128)
T 2db5_A 55 DIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLI 110 (128)
T ss_dssp EEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSEEEEE
T ss_pred CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCeEEEE
Confidence 8999999999999999999999999999999997 999999999999877777766
No 114
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=98.61 E-value=9.7e-08 Score=75.41 Aligned_cols=54 Identities=28% Similarity=0.295 Sum_probs=50.0
Q ss_pred eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
+++|..|.++|||+++| |+.||.|++|||.++.+++++++..+++.....+.+.
T Consensus 35 g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~ 88 (99)
T 3khf_A 35 HHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLR 88 (99)
T ss_dssp EEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred CeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEE
Confidence 67899999999999999 9999999999999999999999999999777777665
No 115
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=98.61 E-value=6.3e-08 Score=77.49 Aligned_cols=63 Identities=24% Similarity=0.410 Sum_probs=54.2
Q ss_pred CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+.+... ..+++|..|.++|||+++| |++||.|++|||.++.+.+++++..+++.....+.+.
T Consensus 16 G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~ 80 (106)
T 3ngh_A 16 GFFLRIEKDTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL 80 (106)
T ss_dssp CCEEECCTTCCSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEE
T ss_pred CEEEEEEeCCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEE
Confidence 4445432 3579999999999999999 9999999999999999999999999998777777765
No 116
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.61 E-value=2.8e-08 Score=79.91 Aligned_cols=57 Identities=23% Similarity=0.433 Sum_probs=52.6
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++.....+.+.
T Consensus 41 ~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 97 (108)
T 1q7x_A 41 HGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLL 97 (108)
T ss_dssp SCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHTTSEEEEE
T ss_pred CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 368999999999999999999999999999999999999999999999877777765
No 117
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=7.8e-08 Score=76.64 Aligned_cols=57 Identities=26% Similarity=0.304 Sum_probs=51.6
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++|.|++||+|++|||..+.++++.++..+++.....+.+.
T Consensus 37 ~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 93 (104)
T 2djt_A 37 DTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLV 93 (104)
T ss_dssp ECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSEEEEE
T ss_pred CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 467999999999999999989999999999999999999999999998866666665
No 118
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=98.61 E-value=4.6e-08 Score=79.77 Aligned_cols=56 Identities=27% Similarity=0.359 Sum_probs=52.0
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcC-CCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR-GKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~-~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++. +++++++..+++.....+.+.
T Consensus 49 ~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~ 105 (117)
T 2o2t_A 49 LGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLV 105 (117)
T ss_dssp EEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCCSEEEEE
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCEEEEE
Confidence 58999999999999999999999999999999998 999999999999877777665
No 119
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.61 E-value=4.5e-08 Score=79.10 Aligned_cols=64 Identities=34% Similarity=0.547 Sum_probs=55.4
Q ss_pred CcEEEEeC-CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG-DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~-~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++|.|+.||+|++|||..+.+++++++..+++.....+.+.
T Consensus 29 G~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~ 93 (111)
T 2dlu_A 29 GFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRML 93 (111)
T ss_dssp CEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEEEEE
T ss_pred CEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 55665432 68999999999999999989999999999999999999999999998766666665
No 120
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.61 E-value=7.9e-08 Score=76.40 Aligned_cols=63 Identities=19% Similarity=0.302 Sum_probs=55.3
Q ss_pred CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++| |++||+|++|||.++.+++++++...++.....+.+.
T Consensus 20 G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~ 84 (102)
T 2d90_A 20 GFYLRAGPEQKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLL 84 (102)
T ss_dssp SCEEEECSSSSSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEEEE
T ss_pred cEEEEeecCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence 5667643 4689999999999999999 9999999999999999999999999998876777666
No 121
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.61 E-value=4.8e-08 Score=79.95 Aligned_cols=64 Identities=28% Similarity=0.495 Sum_probs=54.9
Q ss_pred CcEEEEe----CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE----GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~----~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++...+.+.++
T Consensus 30 G~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l 97 (119)
T 1x6d_A 30 GFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAV 97 (119)
T ss_dssp SEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEE
T ss_pred CEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEE
Confidence 4555432 247999999999999999999999999999999999999999999999887776543
No 122
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=98.60 E-value=5.9e-08 Score=74.33 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=50.3
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++| |++||+|++|||.++.+.++.++...++...+++.+.
T Consensus 25 ~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 79 (85)
T 1rgw_A 25 MPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLT 79 (85)
T ss_dssp SCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEE
T ss_pred CCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEE
Confidence 478999999999999999 9999999999999999999999999998777776665
No 123
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=98.60 E-value=8e-08 Score=76.51 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=50.2
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||++ | |++||+|++|||.++.+.++.++...++.....+.+.
T Consensus 42 ~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 96 (103)
T 1n7t_A 42 DDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELI 96 (103)
T ss_dssp CCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEE
T ss_pred CCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCHHHHHHHhhcCCCeEEEE
Confidence 45899999999999999 8 9999999999999999999999999998777777665
No 124
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=98.60 E-value=1.4e-07 Score=76.83 Aligned_cols=64 Identities=25% Similarity=0.378 Sum_probs=55.2
Q ss_pred CcEEEEeC---CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG---DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~---~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++|.|++||+|++|||.++.+.+++++..+++...+.+.+.
T Consensus 39 G~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~ 105 (114)
T 2gzv_A 39 GISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIH 105 (114)
T ss_dssp SEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEE
T ss_pred eEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 55665432 36999999999999999999999999999999999999999999999877776654
No 125
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=98.60 E-value=1.5e-07 Score=70.97 Aligned_cols=56 Identities=25% Similarity=0.387 Sum_probs=50.6
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++...+.+.+.
T Consensus 21 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 76 (81)
T 2rcz_A 21 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMV 76 (81)
T ss_dssp EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEE
T ss_pred CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEE
Confidence 57899999999999999889999999999999999999999999998877765554
No 126
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=98.59 E-value=1.1e-07 Score=73.57 Aligned_cols=63 Identities=24% Similarity=0.255 Sum_probs=53.4
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
|+++.....+++|..|.++|||+++| |++||+|++|||..+.+.+++++..+++.. ...+.+.
T Consensus 20 G~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~ 84 (90)
T 2eaq_A 20 GFTIKWDIPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMD 84 (90)
T ss_dssp SEEEEEETTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEE
T ss_pred cEEEEecCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEE
Confidence 56666667899999999999999999 999999999999999888999999988752 4455443
No 127
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.59 E-value=1e-07 Score=76.19 Aligned_cols=62 Identities=24% Similarity=0.414 Sum_probs=53.9
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++| |++||+|++|||..+.+++++++..+|+. ...+.+.
T Consensus 30 G~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~v~l~ 94 (104)
T 1wi2_A 30 GFNIRGGKASQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKT-AREISMR 94 (104)
T ss_dssp SEEEECCSSSCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHHH-SSSEEEE
T ss_pred cEEEEcccCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhC-CCEEEEE
Confidence 5566542 2479999999999999999 99999999999999999999999999988 6667665
No 128
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=98.59 E-value=1.3e-07 Score=77.37 Aligned_cols=64 Identities=27% Similarity=0.448 Sum_probs=56.1
Q ss_pred CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++|.|++||+|++|||.++.+.++.++..+++.....+.+.
T Consensus 28 G~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 93 (119)
T 1tp5_A 28 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTII 93 (119)
T ss_dssp CEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEE
T ss_pred cEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 56665443 68999999999999999989999999999999999999999999998877777766
No 129
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=98.58 E-value=3e-08 Score=75.75 Aligned_cols=55 Identities=27% Similarity=0.429 Sum_probs=50.1
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++| |++||+|++|||.++.+.+++++..+++...+.+.+.
T Consensus 23 ~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 77 (83)
T 2kv8_A 23 APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMV 77 (83)
T ss_dssp SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEEE
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 468999999999999999 9999999999999999999999999998877776664
No 130
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=1.7e-07 Score=74.29 Aligned_cols=62 Identities=29% Similarity=0.556 Sum_probs=53.7
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++| |++||+|++|||..+.+.+++++...++. ...+.+.
T Consensus 25 G~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l~ 89 (100)
T 2eeh_A 25 GFSVRGGSEHGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLTS-SSRLHMM 89 (100)
T ss_dssp SEEEECCTTTTCCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCHHHHHHHHHS-CSSEEEE
T ss_pred cEEEEccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC-CCEEEEE
Confidence 4566543 3689999999999999999 99999999999999999999999999987 5666665
No 131
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.58 E-value=1.3e-07 Score=73.90 Aligned_cols=52 Identities=29% Similarity=0.536 Sum_probs=47.7
Q ss_pred EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
+|..|.++|||+++| |++||+|++|||.++.+.+++++..+|+.....+.+.
T Consensus 34 ~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~ 85 (90)
T 1y7n_A 34 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMK 85 (90)
T ss_dssp EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEE
T ss_pred EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 899999999999999 9999999999999999999999999998776666554
No 132
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=98.57 E-value=9.7e-08 Score=79.47 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=50.4
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~ 64 (366)
.+++|..|.++|||+++|.|+.||+|++|||.++.+++++++..+|+... ..+.+.
T Consensus 43 ~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~ 100 (129)
T 2kpk_A 43 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLE 100 (129)
T ss_dssp EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEE
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence 36999999999999999999999999999999999999999999999874 445554
No 133
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.57 E-value=4.5e-08 Score=77.81 Aligned_cols=64 Identities=27% Similarity=0.339 Sum_probs=54.3
Q ss_pred CcEEEEeC---CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG---DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~---~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++|.|++||+|++|||.++.++++.++..+++.....+.+.
T Consensus 25 G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 91 (103)
T 1wfv_A 25 GFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLL 91 (103)
T ss_dssp SBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEE
T ss_pred CEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 45555433 38999999999999999989999999999999999999999999998656666554
No 134
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.57 E-value=6.7e-08 Score=79.25 Aligned_cols=56 Identities=29% Similarity=0.345 Sum_probs=49.1
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC----CCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL----TGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~----~~~v~l~ 64 (366)
+.++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+.. ...+++.
T Consensus 43 ~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~ 102 (118)
T 1v6b_A 43 GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLV 102 (118)
T ss_dssp CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEE
Confidence 4599999999999999944999999999999999999999999999865 4456655
No 135
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=98.57 E-value=1.4e-07 Score=74.48 Aligned_cols=56 Identities=32% Similarity=0.426 Sum_probs=49.4
Q ss_pred CcEEEEe----CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC
Q psy16959 1 GATIRNE----GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL 57 (366)
Q Consensus 1 G~~i~~~----~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~ 57 (366)
|+++... ..+++|..|.++|||+++| |+.||+|++|||.++.+++++++..++++.
T Consensus 23 Gf~v~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~l~~~l~~~ 82 (94)
T 3kzd_A 23 GFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQP 82 (94)
T ss_dssp SEEEEEECSSSSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCHHHHHHHHHSS
T ss_pred CEEEEecCCCCcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhCC
Confidence 5666542 2489999999999999999 999999999999999999999999999863
No 136
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.57 E-value=8.4e-08 Score=79.85 Aligned_cols=64 Identities=16% Similarity=0.337 Sum_probs=55.5
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
|+++.....+++|..|.++|||+++|.|++||.|++|||.++.+.+++++..+|+.. ...+.+.
T Consensus 41 G~~i~~~~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~ 106 (126)
T 1wif_A 41 GLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIK 106 (126)
T ss_dssp CCCEEEETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEE
T ss_pred eEEEEcCCCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 566666677899999999999999999999999999999999999999999999874 3455554
No 137
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=98.56 E-value=3.7e-08 Score=76.67 Aligned_cols=55 Identities=27% Similarity=0.427 Sum_probs=49.2
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++| |++||+|++|||.++.+++++++..+|+.....+.+.
T Consensus 27 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~ 81 (91)
T 2vsp_A 27 PGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLL 81 (91)
T ss_dssp SCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEE
T ss_pred CCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence 578999999999999999 9999999999999999999999999998875566654
No 138
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=98.56 E-value=2.2e-07 Score=72.05 Aligned_cols=56 Identities=25% Similarity=0.387 Sum_probs=51.0
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||.|++|||.++.+++++++..+|+...+.+.+.
T Consensus 23 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 78 (92)
T 3cyy_A 23 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMV 78 (92)
T ss_dssp EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEE
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEE
Confidence 57899999999999999889999999999999999999999999999877766554
No 139
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.56 E-value=2.2e-07 Score=74.84 Aligned_cols=56 Identities=29% Similarity=0.538 Sum_probs=50.9
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++| |++||+|++|||..+.+.++.++...++.....+.+.
T Consensus 45 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~ 100 (110)
T 1x5q_A 45 DEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR 100 (110)
T ss_dssp CCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEE
T ss_pred CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHhhCCCCeEEEE
Confidence 4789999999999999999 9999999999999999999999999998866666665
No 140
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=98.56 E-value=1.7e-07 Score=77.07 Aligned_cols=56 Identities=29% Similarity=0.501 Sum_probs=50.0
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+.. ...+.+.
T Consensus 58 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~ 115 (121)
T 2kom_A 58 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLL 115 (121)
T ss_dssp CCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCSSCEEEEE
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 5799999999999999998999999999999999999999999999875 3455554
No 141
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.56 E-value=5.3e-08 Score=79.24 Aligned_cols=56 Identities=30% Similarity=0.478 Sum_probs=51.8
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus 43 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~ 98 (116)
T 2dm8_A 43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLV 98 (116)
T ss_dssp SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 58999999999999999999999999999999999999999999999877776665
No 142
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.54 E-value=1.3e-07 Score=84.41 Aligned_cols=64 Identities=17% Similarity=0.358 Sum_probs=56.9
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.....+++|..|.+||+|+++|.|++||+|++|||+++.+++++++..+++...+.+.|.
T Consensus 128 G~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~ 191 (206)
T 3r0h_A 128 GLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSME 191 (206)
T ss_dssp CEEEEECSSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred CeEEEcCCceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 4555555568999999999999999889999999999999999999999999999988887776
No 143
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=98.54 E-value=2.2e-07 Score=75.35 Aligned_cols=56 Identities=20% Similarity=0.135 Sum_probs=50.5
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCc-EEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~-v~l~ 64 (366)
..+++|..|.++|||+++| |+.||+|++|||.++.+++++++..+++...+. +.+.
T Consensus 43 ~~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~ 99 (109)
T 2vsv_A 43 NAPVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMK 99 (109)
T ss_dssp SSSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEE
T ss_pred CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEE
Confidence 3568899999999999999 999999999999999999999999999987775 6654
No 144
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.54 E-value=1.9e-07 Score=77.02 Aligned_cols=64 Identities=23% Similarity=0.310 Sum_probs=54.2
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+... ..+.+.
T Consensus 33 G~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~ 101 (123)
T 1ueq_A 33 GFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLV 101 (123)
T ss_dssp SEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEE
T ss_pred eEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence 4555431 346999999999999999999999999999999999999999999999853 566665
No 145
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.54 E-value=8.8e-08 Score=78.39 Aligned_cols=63 Identities=30% Similarity=0.381 Sum_probs=53.2
Q ss_pred CcEEEEeC---CeEEEEEEcCCchhccc--CCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC----cEEEe
Q psy16959 1 GATIRNEG---DAVIVGRVVKGGLADRT--GLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG----QEMTM 64 (366)
Q Consensus 1 G~~i~~~~---~gi~I~~v~~gs~A~~~--G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~----~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++ | |++||+|++|||.++.++++.++..+++...+ .+.+.
T Consensus 30 G~~l~gg~~~~~~v~V~~V~~~spA~~a~gG-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~ 101 (119)
T 2cs5_A 30 GFNVKGGYDQKMPVIVSRVAPGTPADLCVPR-LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLL 101 (119)
T ss_dssp SEEEEEEGGGTEEEEEEEECSSSTTTSSSSC-CCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CEEEecccCCCCCeEEEEECCCCHHHHhhcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEE
Confidence 45555332 37999999999999999 6 99999999999999999999999999988743 66665
No 146
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=98.54 E-value=2.2e-07 Score=76.86 Aligned_cols=63 Identities=21% Similarity=0.344 Sum_probs=52.7
Q ss_pred CcEEEE-eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc--CCCcEEEe
Q psy16959 1 GATIRN-EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG--LTGQEMTM 64 (366)
Q Consensus 1 G~~i~~-~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~--~~~~v~l~ 64 (366)
|+.+.. ...+++|..|.++|||+++| |++||+|++|||..+.+.+++++...|+. ....+.+.
T Consensus 42 G~~l~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~ 107 (124)
T 3tsv_A 42 GLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL 107 (124)
T ss_dssp CEEEEECTTSCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEE
T ss_pred eEEEecCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 455554 34689999999999999999 99999999999999999999999998874 34455554
No 147
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.53 E-value=5.6e-08 Score=78.56 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=51.8
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+++.....+.+.
T Consensus 44 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~g~~v~l~ 99 (111)
T 1uju_A 44 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVL 99 (111)
T ss_dssp CCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEEC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 47999999999999999999999999999999999999999999999877777665
No 148
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=98.51 E-value=2.5e-07 Score=72.28 Aligned_cols=61 Identities=28% Similarity=0.419 Sum_probs=51.7
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.. ..+++|..|.++|||+++| |++||+|++|||..+.+.++.++...++. ...+.+.
T Consensus 22 G~~l~~-~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~-g~~v~l~ 82 (93)
T 2dls_A 22 GFTVSG-DRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIKS-GAYVALT 82 (93)
T ss_dssp CEEEEC-SSSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCHHHHHHHHTS-SSEEEEE
T ss_pred eEEEeC-CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhhcC-CCEEEEE
Confidence 444542 4679999999999999999 99999999999999999999999988874 6666665
No 149
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=98.51 E-value=4.8e-07 Score=73.79 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=51.5
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~ 64 (366)
|++|.....+.+|.+|.+ ++..+| |++||.|++|||.++.+++|++++.+|+.++ ..++|+
T Consensus 26 GFsI~~~~~g~~V~~I~~--~~~~aG-L~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~ 88 (113)
T 3soe_A 26 GFAIADSPTGQKVKMILD--SQWCQG-LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLL 88 (113)
T ss_dssp SEEEEEETTEEEEEEESC--GGGSTT-CCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEE
T ss_pred cEEEeCCCCCcEEEEecC--hHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 678866667888999988 466777 9999999999999999999999999999864 356665
No 150
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=98.49 E-value=5.7e-07 Score=71.94 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=48.5
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+ +| |++||+|++|||.++.+.++.++...++.....+.+.
T Consensus 39 ~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 92 (107)
T 2h2b_A 39 TSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKIT 92 (107)
T ss_dssp CCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccHHHHHHHhhCCCCEEEEE
Confidence 489999999999999 87 9999999999999999999999988888766766665
No 151
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.49 E-value=1.8e-07 Score=73.19 Aligned_cols=55 Identities=22% Similarity=0.217 Sum_probs=50.7
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++| |++||+|++|||.++.+.+++++..+++.....+.+.
T Consensus 30 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 84 (94)
T 1vb7_A 30 TPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQ 84 (94)
T ss_dssp EEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEE
T ss_pred CCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 478999999999999999 9999999999999999999999999999877777665
No 152
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.49 E-value=7.6e-08 Score=77.00 Aligned_cols=63 Identities=21% Similarity=0.348 Sum_probs=53.9
Q ss_pred CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++| |++||.|++|||.++.++++.++...++...+.+.+.
T Consensus 22 G~~l~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 86 (106)
T 2eei_A 22 GFSLKTVQGKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFL 86 (106)
T ss_dssp SCCEECCSSCCSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHHCSEEEEE
T ss_pred CEEEEeccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 4555422 3589999999999999999 9999999999999999999999999998776776665
No 153
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=98.49 E-value=4.2e-07 Score=75.11 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=54.3
Q ss_pred CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++| |+.||+|++|||.++.+++++++..+|+...+....+
T Consensus 23 G~~l~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l 87 (128)
T 2kjd_A 23 GFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLL 87 (128)
T ss_dssp CEEEEECSSSCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEE
T ss_pred cEEEEecCCCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEE
Confidence 55665433 489999999999999999 9999999999999999999999999999886665533
No 154
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=98.49 E-value=2.6e-07 Score=82.12 Aligned_cols=62 Identities=31% Similarity=0.514 Sum_probs=54.4
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.+||||+++| |++||+|++|||.++.+++++++..+++. ...+.+.
T Consensus 99 G~~i~~~~~~~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~v~l~ 163 (192)
T 3k1r_A 99 GLSVRGGLEFGCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRT-EKTVSIK 163 (192)
T ss_dssp CEEEEEEGGGTEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHHHHHHHHTS-SSEEEEE
T ss_pred eEEEEcccccCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHcC-CCeEEEE
Confidence 5566433 3589999999999999999 99999999999999999999999999988 7777765
No 155
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=98.48 E-value=1.5e-07 Score=76.52 Aligned_cols=56 Identities=21% Similarity=0.399 Sum_probs=51.1
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++| |++||+|++|||.++.+.+++++...++.....+.+.
T Consensus 37 ~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~ 92 (114)
T 2edz_A 37 TDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL 92 (114)
T ss_dssp CCSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEEEE
T ss_pred CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence 4689999999999999999 9999999999999999999999999998876666665
No 156
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.48 E-value=3.1e-07 Score=74.88 Aligned_cols=63 Identities=27% Similarity=0.430 Sum_probs=53.3
Q ss_pred CcEEEEe-CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE-GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~-~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++| |++||+|++|||.++.+.++.++...++.....+.+.
T Consensus 33 G~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 96 (117)
T 1uit_A 33 GISIVSGEKGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITIL 96 (117)
T ss_dssp CEEEEECTTSCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEE
T ss_pred cEEEEccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 4455443 4689999999999999999 9999999999999999999999887777666666665
No 157
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.47 E-value=8.1e-08 Score=76.25 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=50.4
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++| |++||+|++|||..+.+++++++..+++...+.+.+.
T Consensus 36 ~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~ 90 (100)
T 1whd_A 36 SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILL 90 (100)
T ss_dssp SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEE
T ss_pred CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 568999999999999999 9999999999999999999999999999877776665
No 158
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=98.45 E-value=4.7e-07 Score=73.06 Aligned_cols=64 Identities=25% Similarity=0.518 Sum_probs=53.5
Q ss_pred CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC-CcEEEe
Q psy16959 1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT-GQEMTM 64 (366)
Q Consensus 1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~-~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++|.|+.||+|++|||..+.+++++++..+|+... ..+.+.
T Consensus 16 G~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~ 82 (112)
T 1qau_A 16 GFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL 82 (112)
T ss_dssp SEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEE
T ss_pred eEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEE
Confidence 56666543 48999999999999999933999999999999999999999999998754 455554
No 159
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.45 E-value=4.8e-07 Score=71.66 Aligned_cols=62 Identities=29% Similarity=0.410 Sum_probs=51.1
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++| |++||+|++|||..+.++++.+++..++.. ..+.+.
T Consensus 24 G~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~-~~v~l~ 88 (101)
T 1uez_A 24 GFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGS-KKLVLS 88 (101)
T ss_dssp SEEEEECTTTTCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHHHHHHSSSS-SSCCEE
T ss_pred cEEEeCCCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHhhcCC-CeEEEE
Confidence 5666544 3589999999999999999 999999999999999999998887777653 455444
No 160
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.44 E-value=2.4e-07 Score=75.57 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=49.0
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+ +| |++||+|++|||.++.++++.+++.+++.....+.+.
T Consensus 46 ~gv~V~~V~~~spA~-~g-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~ 99 (117)
T 2csj_A 46 TSIVISDVLPGGPAD-GL-LQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIV 99 (117)
T ss_dssp CBCEEEEECTTSSHH-HH-BCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEE
T ss_pred CCEEEEEECCCCccc-cc-CCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEE
Confidence 479999999999997 66 9999999999999999999999999999877777665
No 161
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=98.44 E-value=5.4e-07 Score=79.63 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=51.3
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||++ | |++||+|++|||.++.++++.+++..++...+.+.|.
T Consensus 23 ~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~ 77 (195)
T 2qbw_A 23 DDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELI 77 (195)
T ss_dssp CCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEE
T ss_pred CCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 35899999999999999 8 9999999999999999999999999999988877776
No 162
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.44 E-value=1.9e-07 Score=74.37 Aligned_cols=63 Identities=21% Similarity=0.239 Sum_probs=53.0
Q ss_pred CcEEEEeC---CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEG---DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~---~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++| |++||+|++|||..+.+++++++..+|+.....+.+.
T Consensus 18 G~~l~~g~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~ 83 (103)
T 1v5l_A 18 GFRLSGGIDFNQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLK 83 (103)
T ss_dssp SBCCEEETTTTEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECE
T ss_pred CEEEeccccCCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 44554332 378999999999999999 9999999999999999999999999998875555554
No 163
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=3.1e-07 Score=71.87 Aligned_cols=55 Identities=22% Similarity=0.175 Sum_probs=49.9
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++| |++||+|++|||.++.++++.++..+++.....+.+.
T Consensus 32 ~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~ 86 (94)
T 2eeg_A 32 APLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLS 86 (94)
T ss_dssp SCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEEEE
T ss_pred CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 578999999999999999 9999999999999999999999999998866666655
No 164
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=98.43 E-value=2.4e-07 Score=86.50 Aligned_cols=64 Identities=23% Similarity=0.361 Sum_probs=56.0
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|++|... ..+++|..|.+||||++++.|++||+|++|||+++.++++++++.+|+...+.++|.
T Consensus 92 Gf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~L~ 158 (263)
T 1z87_A 92 GISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLE 158 (263)
T ss_dssp CCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCEE
T ss_pred eEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEE
Confidence 6777653 258999999999999995339999999999999999999999999999988887776
No 165
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.43 E-value=3.8e-07 Score=72.57 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=53.5
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++| |++||+|++|||..+.++++.++..+++.....+.+.
T Consensus 18 G~~l~gg~~~~~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~ 83 (103)
T 1wf7_A 18 GFRLQGGKDFNMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMT 83 (103)
T ss_dssp SCCEEEETTTTEEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEE
T ss_pred CEEEeccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 4555532 2368999999999999999 9999999999999999999999999998876666665
No 166
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=98.43 E-value=8.8e-07 Score=68.23 Aligned_cols=61 Identities=28% Similarity=0.399 Sum_probs=47.8
Q ss_pred CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc-C-CCcEEEe
Q psy16959 1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG-L-TGQEMTM 64 (366)
Q Consensus 1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~-~-~~~v~l~ 64 (366)
|+++... ..+++|..+ ++|||+ +| |++||.|++|||.++.+.+++++...++. . ..++.+.
T Consensus 17 G~~~~~~~~~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~ 81 (88)
T 3bpu_A 17 GFTIADSPGGGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLL 81 (88)
T ss_dssp SCEEEECTTSSSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEE
T ss_pred eEEEEecCCCCcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEE
Confidence 5667644 357899887 999999 88 99999999999999999999999999985 2 3445543
No 167
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.41 E-value=1.1e-06 Score=69.10 Aligned_cols=61 Identities=30% Similarity=0.338 Sum_probs=51.3
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~ 64 (366)
|+++.....+++|..|.++ |+++| |++||+|++|||.++.+++++++..+|+... ..+.+.
T Consensus 24 G~~i~~~~~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~ 86 (96)
T 1ujv_A 24 GFTIADSPTGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLI 86 (96)
T ss_dssp SEEEEEETTEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEE
T ss_pred eEEEEcCCCCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 5677666678999999984 67788 9999999999999999999999999999863 455554
No 168
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.40 E-value=7.1e-07 Score=78.41 Aligned_cols=56 Identities=20% Similarity=0.341 Sum_probs=52.4
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++.....+.+.
T Consensus 35 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 90 (196)
T 3gsl_A 35 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLY 90 (196)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEE
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 48999999999999999999999999999999999999999999999887777776
No 169
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=98.39 E-value=8.4e-07 Score=74.87 Aligned_cols=56 Identities=25% Similarity=0.386 Sum_probs=49.9
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCc-EEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~-v~l~ 64 (366)
..+++|..|.++|||+++| |++||+|++|||.++.+++++++..+|+...+. +.+.
T Consensus 63 ~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v~l~ 119 (139)
T 2vz5_A 63 DKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLL 119 (139)
T ss_dssp CCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEEEEE
T ss_pred CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEEEEE
Confidence 3689999999999999999 999999999999999999999999999875544 5554
No 170
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.39 E-value=7.7e-07 Score=73.70 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=48.4
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++| |++||.|++|||..+.+.++.++...++.. ..+.+.
T Consensus 46 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~v~l~ 99 (128)
T 1uf1_A 46 LGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKSS-RHLILT 99 (128)
T ss_dssp CCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHHHHHHHTTC-SEEEEE
T ss_pred CCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEE
Confidence 479999999999999999 999999999999999999999999988774 466554
No 171
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.39 E-value=5.8e-07 Score=73.90 Aligned_cols=56 Identities=20% Similarity=0.347 Sum_probs=50.3
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||..+.+++++++..+|+... ..+.+.
T Consensus 45 ~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~ 102 (122)
T 1v5q_A 45 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLE 102 (122)
T ss_dssp SCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEE
T ss_pred CCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence 46899999999999999989999999999999999999999999998764 466655
No 172
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.38 E-value=1.7e-07 Score=75.66 Aligned_cols=56 Identities=27% Similarity=0.462 Sum_probs=51.4
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||+++.+.++.++..+++.....+.+.
T Consensus 39 ~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v~l~ 94 (113)
T 1um7_A 39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIV 94 (113)
T ss_dssp CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEEEEE
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 68999999999999999989999999999999999999999999998877776665
No 173
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=97.73 E-value=4.3e-08 Score=79.79 Aligned_cols=55 Identities=31% Similarity=0.488 Sum_probs=49.6
Q ss_pred CeEEEEEEcCCchhcc-cCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADR-TGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~-~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||++ +| |++||+|++|||.++.+.+++++..+++...+++.+.
T Consensus 53 ~gv~V~~V~~~spA~~~aG-L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~l~ 108 (112)
T 2lob_A 53 VPILISEIHPGQPADRCGG-LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFE 108 (112)
Confidence 4789999999999999 67 9999999999999999999999999998877776553
No 174
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.37 E-value=1.2e-06 Score=75.67 Aligned_cols=63 Identities=25% Similarity=0.332 Sum_probs=54.9
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC-cEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG-QEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~-~v~l~ 64 (366)
|+++.....+++|..|.++|||+++| |+.||+|++|||..+.+.+++.+..+++...+ .+.+.
T Consensus 19 G~~~~~~~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~ 82 (166)
T 1w9e_A 19 GLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMT 82 (166)
T ss_dssp SEEEEEETTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEE
T ss_pred eEEEEeCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEE
Confidence 56777777899999999999999999 99999999999999999998778888877665 55555
No 175
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=1.9e-07 Score=77.37 Aligned_cols=55 Identities=29% Similarity=0.430 Sum_probs=50.9
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++| |++||+|++|||.++.+++++++..+|+.....+.+.
T Consensus 61 ~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~ 115 (126)
T 2yuy_A 61 DTIFVKQVKEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELS 115 (126)
T ss_dssp CCCCBCCCCSSSHHHHHT-CCSSCCCCEETTEECSSCCHHHHHHHHHTCTTEEEEE
T ss_pred CCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence 568999999999999999 9999999999999999999999999999876777765
No 176
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=4.5e-07 Score=71.85 Aligned_cols=62 Identities=23% Similarity=0.376 Sum_probs=51.7
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhccc-CCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRT-GLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~-G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++ | |++||+|++|||.++.+. ++++..+++.....+.+.
T Consensus 24 G~~~~gg~~~~~~v~V~~V~~~spA~~agG-L~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~v~l~ 89 (100)
T 2edp_A 24 GFTLKGGLEHCEPLTVSKIEDGGKAALSQK-MRTGDELVNINGTPLYGS-RQEALILIKGSFRILKLI 89 (100)
T ss_dssp CCCEEEEGGGTEEEEECCCCTTSHHHHHTS-CCTTCEEEEETTEECCSC-SHHHHHHHHTCCSSCEEE
T ss_pred CEEEeccCCCCCCeEEEEECCCCHHHHcCC-CCCCCEEEEECCEEccch-HHHHHHHHHhCCCeEEEE
Confidence 4555432 346899999999999999 6 999999999999999997 888999998876676665
No 177
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.35 E-value=1.8e-07 Score=73.65 Aligned_cols=55 Identities=27% Similarity=0.252 Sum_probs=49.5
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+ +| |++||+|++|||.++.++++.++...++.....+.+.
T Consensus 30 ~~~~~V~~V~~~spA~-ag-L~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~l~ 84 (96)
T 2edv_A 30 SLPLTVVAVTAGGSAH-GK-LFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSIT 84 (96)
T ss_dssp SSSCBCCCBCSSSSST-TT-SCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEEEE
T ss_pred CCCeEEEEECCCCchh-hC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 3478999999999996 77 9999999999999999999999999999877777776
No 178
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.33 E-value=7.4e-07 Score=72.29 Aligned_cols=54 Identities=26% Similarity=0.355 Sum_probs=49.0
Q ss_pred eEEEEEEcCCchhcc-cCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 10 AVIVGRVVKGGLADR-TGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 10 gi~I~~v~~gs~A~~-~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
+++|..|.++|||++ +| |++||+|++|||..+.+++++++..+|+.....+.+.
T Consensus 44 ~~~V~~V~~~spA~~~ag-L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~ 98 (114)
T 1uew_A 44 PHKIGRIIDGSPADRCAK-LKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLR 98 (114)
T ss_dssp SCEEEEECTTCTTGGGSS-CCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEE
T ss_pred CeEEEEECCCChHHHhCC-CCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 469999999999999 88 9999999999999999999999999999866666665
No 179
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.32 E-value=8e-07 Score=78.10 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=51.8
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||+|++|||.++.+++++++..+|+.+...+.+.
T Consensus 130 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~ 185 (196)
T 3gsl_A 130 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLK 185 (196)
T ss_dssp CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEEEEEE
T ss_pred CCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCeEEEE
Confidence 47999999999999999999999999999999999999999999999877777665
No 180
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.31 E-value=5.6e-07 Score=74.35 Aligned_cols=64 Identities=25% Similarity=0.524 Sum_probs=53.5
Q ss_pred CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC-cEEEe
Q psy16959 1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG-QEMTM 64 (366)
Q Consensus 1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~-~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++|.|+.||+|++|||..+.+++++++..+|+...+ .+.+.
T Consensus 23 G~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~ 89 (127)
T 1b8q_A 23 GFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL 89 (127)
T ss_dssp SCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEE
T ss_pred eEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEE
Confidence 56666544 389999999999999999339999999999999999999999999987654 45554
No 181
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=7.1e-07 Score=72.84 Aligned_cols=53 Identities=32% Similarity=0.403 Sum_probs=47.8
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++| |++||+|++|||.++.+++++++..+++.. .+.+.
T Consensus 44 ~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~--~v~l~ 96 (114)
T 2d8i_A 44 RRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNSSMLKDFLSQP--SLGLL 96 (114)
T ss_dssp EEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCHHHHHHHHTSS--EEEEE
T ss_pred CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHhCC--cEEEE
Confidence 479999999999999999 999999999999999999999999999863 55554
No 182
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=98.30 E-value=1.4e-06 Score=70.45 Aligned_cols=62 Identities=23% Similarity=0.419 Sum_probs=52.6
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++| |++||+|++|||..+.++++.++..+++.. +.+.+.
T Consensus 30 G~~l~~~~~~~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~v~l~ 94 (114)
T 1x5n_A 30 GCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RSLTIS 94 (114)
T ss_dssp CEEEEECCSSSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTHHHHHHHHC-SSEEEE
T ss_pred eEEEeecCCCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEEEE
Confidence 5666532 3589999999999999999 999999999999999999988899988875 566655
No 183
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.29 E-value=5e-07 Score=73.31 Aligned_cols=56 Identities=23% Similarity=0.272 Sum_probs=49.6
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCc-EEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~-v~l~ 64 (366)
..+++|..|.++|||+++| |+.||+|++|||..+.+++++++..+|+...+. +.+.
T Consensus 35 ~~~v~V~~V~~~spA~~aG-L~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~ 91 (111)
T 1vae_A 35 NTPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMK 91 (111)
T ss_dssp SSSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEE
T ss_pred CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEE
Confidence 3568899999999999999 999999999999999999999999999987764 5444
No 184
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.25 E-value=2.3e-06 Score=76.17 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=52.1
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCC--CCHHHHHHHHHcCCCc-EEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRG--KSIHIVCDILVGLTGQ-EMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~--~~~~~a~~~Lk~~~~~-v~l~ 64 (366)
.+++|..|.++|||+++|.|+.||+|++|||.++.+ .++.+++.+++...+. +.+.
T Consensus 45 ~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~v~l~ 103 (206)
T 3r0h_A 45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLT 103 (206)
T ss_dssp SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSSEEEEE
T ss_pred CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCCceEEE
Confidence 479999999999999998899999999999999999 9999999999998887 7665
No 185
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=98.21 E-value=1.5e-07 Score=89.28 Aligned_cols=111 Identities=29% Similarity=0.481 Sum_probs=60.9
Q ss_pred CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcccCcc-cccCCChHH--HHHHHHcCCeEE-
Q psy16959 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDH-TLAGTSLDA--IRTVVNAGKICV- 315 (366)
Q Consensus 240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~--i~~vir~~k~~~- 315 (366)
.+|||||+|||.|..|+.+|++ +|+|++||+|+++++.+.+||+|+++..... .-.++=++. .++..++-.-..
T Consensus 4 ~s~yvRa~fdY~~~~D~~~P~~--gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~~~e~~~~~~~~~~~ 81 (292)
T 3tvt_A 4 RSLYVRALFDYDPNRDDGLPSR--GLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRWERKMRARDRSVK 81 (292)
T ss_dssp -CCEEEECSCBCC-----------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHHHHHHHHHC------
T ss_pred ceEEEEEeccCCCCCCCCCCCC--cCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChHHHHHHHHHhhcccc
Confidence 4799999999999999999998 8999999999999999999999988754332 223332332 333333221111
Q ss_pred --Ecccc-hhhhccccCCCCcEEEEEeCCCHHHHHHHHHhcC
Q psy16959 316 --LNLHP-QSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG 354 (366)
Q Consensus 316 --l~~~p-~~~~~l~~~~~~p~vi~~~~~~~~~l~~~~~~r~ 354 (366)
.++.+ ..+.++......|+|+++ +++..|.+++.+.-
T Consensus 82 ~~~~~~~YE~V~~~~~~~~RpvVl~G--p~K~tl~~~Ll~~~ 121 (292)
T 3tvt_A 82 SEENVLSYEAVQRLSINYTRPVIILG--PLKDRINDDLISEY 121 (292)
T ss_dssp ----CCCEEEEEEEECSSCCCEEEES--TTHHHHHHHHHHHC
T ss_pred ccccccchheEEeccCCCCCeEEEeC--CCHHHHHHHHHHhC
Confidence 11111 122333333447777765 35888888887764
No 186
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.18 E-value=3.2e-06 Score=75.05 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=54.1
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+++... ..+++|..|.++|||+++|.|+.||+|++|||.++.+.+|.++..+++.....+.+.
T Consensus 22 G~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~ 88 (200)
T 2qt5_A 22 GLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLE 88 (200)
T ss_dssp CEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEE
T ss_pred CEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 4555432 356899999999999999339999999999999999999999999998877777666
No 187
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.17 E-value=3.1e-06 Score=69.72 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=50.5
Q ss_pred CcEEEEeC-----CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC-CcEEEe
Q psy16959 1 GATIRNEG-----DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT-GQEMTM 64 (366)
Q Consensus 1 G~~i~~~~-----~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~-~~v~l~ 64 (366)
|+++.... .+++|..|.++|||+++|.|++||+|++|||..+. +++++..+|+... ..+.+.
T Consensus 35 G~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~--~~~~~~~~l~~~~g~~v~l~ 102 (124)
T 1wh1_A 35 GLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEENKNFSLL 102 (124)
T ss_dssp CEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSSCCSCCEE
T ss_pred cEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCCEEEEE
Confidence 55665432 68999999999999999989999999999999997 4789999998754 344443
No 188
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.14 E-value=6.3e-06 Score=73.13 Aligned_cols=56 Identities=29% Similarity=0.477 Sum_probs=50.8
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++|.|++||.|++|||.++.+++++++..+|+.....+.+.
T Consensus 135 ~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~ 190 (200)
T 2qt5_A 135 RPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLL 190 (200)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEE
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence 47899999999999999989999999999999999999999999999855566554
No 189
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.12 E-value=5.1e-06 Score=68.08 Aligned_cols=55 Identities=29% Similarity=0.373 Sum_probs=49.4
Q ss_pred CeEEEEEEcC--CchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVK--GGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~--gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.+ +|||+++| |+.||+|++|||..+.+.+++++...|+.....+.+.
T Consensus 44 ~gv~V~~V~~~~~spA~~aG-L~~GD~Il~Vng~~v~~~~~~dl~~~l~~~g~~v~l~ 100 (118)
T 2yub_A 44 TTVQVKEVNRMHISPNNRNA-IHPGDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLL 100 (118)
T ss_dssp CEEEEEECCTTTSCTTHHHH-CCTTCCEEEESSSBTTTSCHHHHHHHHHCCSSCEEEE
T ss_pred CcEEEEEecCCCCChHHHcC-CCCCCEEEEECCEECCCcCHHHHHHHHHhCCCEEEEE
Confidence 6899999999 99999999 9999999999999999999999999998874455554
No 190
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.11 E-value=2e-06 Score=81.15 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=30.2
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhccCCcceeeec-cCCCCC
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPH-TSRPMK 143 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~-tTr~pr 143 (366)
..+.+|+|+||+||||||++..|++..+.....++. ++|.+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~ 73 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH 73 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhc
Confidence 346789999999999999999999864323344444 455543
No 191
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.11 E-value=4.7e-06 Score=73.86 Aligned_cols=57 Identities=30% Similarity=0.464 Sum_probs=51.6
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++|.|++||.|++|||.++.+++++++..+|+.....+.+.
T Consensus 134 ~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~ 190 (196)
T 1p1d_A 134 GDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLK 190 (196)
T ss_dssp TCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEE
T ss_pred CCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEE
Confidence 458999999999999999989999999999999999999999999998876666654
No 192
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=98.11 E-value=1.5e-06 Score=78.78 Aligned_cols=63 Identities=21% Similarity=0.337 Sum_probs=52.9
Q ss_pred CcEEEEeC--CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcE-EEe
Q psy16959 1 GATIRNEG--DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQE-MTM 64 (366)
Q Consensus 1 G~~i~~~~--~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v-~l~ 64 (366)
|+++.... .+++|..|.+||||+++| |+.||+|++|||..+.+++++++..+|+.....+ .+.
T Consensus 23 G~~l~~~~~~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~v~~l~ 88 (216)
T 2krg_A 23 GFNLHSDKSKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLV 88 (216)
T ss_dssp CEEECCCSSSCSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCTHHHHHHHHHHCSEEEEEE
T ss_pred eEEEEecCCCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEEEE
Confidence 45554333 389999999999999999 9999999999999999999999999998765556 443
No 193
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.11 E-value=5.7e-06 Score=73.28 Aligned_cols=56 Identities=20% Similarity=0.347 Sum_probs=49.9
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCC--CcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT--GQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~--~~v~l~ 64 (366)
.+++|..|.++|||+++|.|+.||.|++|||..+.+++++++..+|+... ..+.+.
T Consensus 36 ~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~ 93 (196)
T 1p1d_A 36 SPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLE 93 (196)
T ss_dssp CSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEE
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEE
Confidence 46899999999999999989999999999999999999999999998874 445554
No 194
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.93 E-value=2.5e-06 Score=78.31 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=29.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRP 141 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~ 141 (366)
.+..|+|+||+||||||++..|++..+...++...++|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~ 66 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLRE 66 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHH
Confidence 345689999999999999999998765444555444443
No 195
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=97.83 E-value=4.2e-06 Score=82.32 Aligned_cols=55 Identities=35% Similarity=0.548 Sum_probs=49.1
Q ss_pred eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC--cEEEe
Q psy16959 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG--QEMTM 64 (366)
Q Consensus 10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~--~v~l~ 64 (366)
+++|..|.+||||+++|.|+.||+|++|||.++.+++++++..+|+...+ .+.+.
T Consensus 233 g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~ 289 (388)
T 3suz_A 233 TVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLN 289 (388)
T ss_dssp CCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEE
T ss_pred CEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCccccc
Confidence 48999999999999999999999999999999999999999999988633 35554
No 196
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=97.80 E-value=4.5e-05 Score=61.35 Aligned_cols=53 Identities=26% Similarity=0.372 Sum_probs=45.4
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++| |++||.|++|||..+. +.+++...++. ...+.+.
T Consensus 34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~--~~~~~~~~l~~-~~~v~l~ 86 (113)
T 2pzd_A 34 QHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQ 86 (113)
T ss_dssp SSCEEEEEEBTTSHHHHHT-CCTTCEEEEETTEECC--SHHHHHHHHHH-CSSEEEE
T ss_pred CCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHhC-CCeEEEE
Confidence 4689999999999999999 9999999999999997 46788888876 4555554
No 197
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=97.80 E-value=4.8e-05 Score=74.66 Aligned_cols=60 Identities=32% Similarity=0.566 Sum_probs=52.3
Q ss_pred CcEEEEe---CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcE
Q psy16959 1 GATIRNE---GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQE 61 (366)
Q Consensus 1 G~~i~~~---~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v 61 (366)
|+.+... +++++|..|.++|||+++| |++||.|++|||.++.+++.+++..+|++..++.
T Consensus 88 G~~~~~~~~~~~~~~V~~v~~~spA~~aG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~ 150 (388)
T 1fc6_A 88 GLEITYDGGSGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQ 150 (388)
T ss_dssp SEEEEECTTCSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCE
T ss_pred EEEEEEeecCCCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCE
Confidence 4566554 5789999999999999999 9999999999999999999999999998765553
No 198
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.75 E-value=6.6e-05 Score=64.43 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.1
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+++|+|+|++||||||+++.|++..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998743
No 199
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=97.62 E-value=4.3e-05 Score=59.74 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=43.9
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
..+++|..|.++|||++ | |++||.|++|||..+.+ .+++...|... ...+.+.
T Consensus 4 ~~Gv~V~~V~~~spA~~-G-L~~GD~Il~InG~~v~~--~~~l~~~l~~~~~g~~v~l~ 58 (94)
T 2kl1_A 4 AKGVYVMSVLPNMPAAG-R-LEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRVT 58 (94)
T ss_dssp CCCEECCCCCTTSTTBT-T-BCTTCEEEEETTBCCCC--HHHHHHHHHHSCTTCCEEEE
T ss_pred CCcEEEEEECCCChHHh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEE
Confidence 46799999999999999 8 99999999999999975 47888888764 4455554
No 200
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=97.61 E-value=0.00012 Score=57.73 Aligned_cols=54 Identities=26% Similarity=0.183 Sum_probs=43.4
Q ss_pred eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 7 ~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
...|++|..|.++|||+. | |++||.|++|||..+.+ .+++...|... ...+.+.
T Consensus 5 ~~~Gv~V~~V~~~spA~~-G-L~~GD~I~~Ing~~v~~--~~dl~~~l~~~~~g~~v~l~ 60 (100)
T 3i18_A 5 TYDGVYVMSVKDDVPAAD-V-LHAGDLITEIDGNAFKS--SQEFIDYIHSKKVGDTVKIN 60 (100)
T ss_dssp CCCCEEEEEECTTSGGGG-T-CCTTCEEEEETTBCCSS--HHHHHHHHHTSCTTCEEEEE
T ss_pred eCCCEEEEEeCCCCchHH-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEE
Confidence 467899999999999995 8 99999999999999865 47788888763 3344443
No 201
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=97.60 E-value=2.1e-05 Score=61.24 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=41.9
Q ss_pred eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
|++|..|.++|||++ | |++||.|++|||..+.+ .+++...|... ..++.+.
T Consensus 2 Gv~V~~V~~~spA~~-G-L~~GD~I~~InG~~v~~--~~~l~~~l~~~~~g~~v~l~ 54 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-K-IEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTLK 54 (91)
T ss_dssp CSSCCCCCCSSCCSS-C-CCSSCEEEEETTBCCSS--HHHHHHHHSSCCSSCEECEE
T ss_pred ceEEEEECCCChHHH-c-CCCCCEEEEECCEECCC--HHHHHHHHHcCCCCCEEEEE
Confidence 578889999999999 8 99999999999999975 57888888775 3344443
No 202
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.54 E-value=6e-05 Score=64.46 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=21.3
Q ss_pred CCcEEEeCCCCCChHHHHHHHHh
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
+++|+|+|++||||||+++.|++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 46789999999999999999997
No 203
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=97.52 E-value=1.3e-05 Score=78.79 Aligned_cols=52 Identities=27% Similarity=0.507 Sum_probs=0.0
Q ss_pred EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
+|..|.+||+|+++| |++||+|++|||.++.+.++++++.+|+...+.+++.
T Consensus 318 ~I~~V~~gs~A~~aG-L~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~ 369 (388)
T 3suz_A 318 IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMK 369 (388)
T ss_dssp -----------------------------------------------------
T ss_pred EEEEeecCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 788999999999999 9999999999999999999999999999988887765
No 204
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=97.51 E-value=0.00016 Score=57.98 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=43.8
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++| |++||.|++|||..+.+ .+++...++. ...+.+.
T Consensus 34 ~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~-g~~v~l~ 86 (112)
T 2p3w_A 34 SSGIYVQEVAPNSPSQRGG-IQDGDIIVKVNGRPLVD--SSELQEAVLT-ESPLLLE 86 (112)
T ss_dssp CSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHHH-CSSEEEE
T ss_pred CCCeEEEEECCCChHHHCC-CCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEE
Confidence 4689999999999999999 99999999999999974 5777777753 4555554
No 205
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=97.50 E-value=0.00018 Score=59.86 Aligned_cols=53 Identities=21% Similarity=0.112 Sum_probs=43.2
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
..+++|..|.++|||+ +| |+.||.|++|||..+.+. +++...+... ...+.+.
T Consensus 56 ~~g~~V~~V~~~spA~-aG-L~~GD~I~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~ 110 (134)
T 2l97_A 56 TSGVIVRSVQSNMPAN-GH-LEKYDVITKVDDKEIASS--TDLQSALYNHSIGDTIKIT 110 (134)
T ss_dssp CSCEEEEECSTTSGGG-TT-SCSSCEEEEETTEECCCH--HHHHHHHHHSSTTCEEEEE
T ss_pred CCCEEEEEECCCCchH-HC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEE
Confidence 3689999999999999 99 999999999999999754 6777777664 3445544
No 206
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=97.47 E-value=0.00025 Score=60.96 Aligned_cols=51 Identities=29% Similarity=0.318 Sum_probs=45.5
Q ss_pred EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEE
Q psy16959 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMT 63 (366)
Q Consensus 12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l 63 (366)
+|..+.++|||+++| |+.||.|++|||.++.+.+++.+...++.....+.+
T Consensus 110 ~v~~v~~~s~a~~aG-l~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l 160 (166)
T 1w9e_A 110 KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTI 160 (166)
T ss_dssp EEEEECTTSHHHHTT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEE
T ss_pred EEEEEccCCHHHHcC-CCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEE
Confidence 889999999999999 999999999999999999999988888776655544
No 207
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=97.46 E-value=0.00017 Score=56.44 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=40.6
Q ss_pred EEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC--cEEEe
Q psy16959 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG--QEMTM 64 (366)
Q Consensus 12 ~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~--~v~l~ 64 (366)
+|..|.++|||+++| |+.||+|++|||..+.+. +++...|....+ .+.+.
T Consensus 5 ~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~ 56 (95)
T 3id1_A 5 VVGEIAANSIAAEAQ-IAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTIT 56 (95)
T ss_dssp BEEEECTTSHHHHTT-CCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEE
T ss_pred EEEeeCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEE
Confidence 688999999999999 999999999999999754 678777765433 44444
No 208
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.45 E-value=3e-05 Score=69.04 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=23.0
Q ss_pred EEEeCCCCCChHHHHHHHHhccCCcceee
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSDRFAAAI 135 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~~~~~~~ 135 (366)
|+|+||+||||||+++.|++..+...++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999988754333333
No 209
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.42 E-value=3.8e-05 Score=68.27 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=20.8
Q ss_pred EEEeCCCCCChHHHHHHHHhccC
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
|+|+||+||||||+++.|++..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988754
No 210
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.40 E-value=0.00063 Score=59.73 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=23.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++++|+|+|++||||||+++.|++..
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999874
No 211
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.38 E-value=7.4e-05 Score=64.53 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=23.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
++++|+|+|++||||||++..|++..+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 557899999999999999999998643
No 212
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=97.37 E-value=0.00016 Score=55.61 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=41.5
Q ss_pred EEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCC-cEEEe
Q psy16959 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG-QEMTM 64 (366)
Q Consensus 11 i~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~-~v~l~ 64 (366)
++|..|.++|||+++| |+.||.|++|||..+.+ .+++...+....+ .+.+.
T Consensus 6 ~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~ 57 (91)
T 2zpm_A 6 PVLENVQPNSAASXAG-LQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALE 57 (91)
T ss_dssp CBCSEECTTSHHHHTT-CCTTCEEEEETTEECCC--HHHHHHHHHHCTTCCEEEE
T ss_pred eEEEEECCCChHHhcC-CCCCCEEEEECCeEcCC--HHHHHHHHhcCCCCeEEEE
Confidence 4688999999999999 99999999999999975 5788888876543 44444
No 213
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.36 E-value=7.7e-05 Score=64.83 Aligned_cols=26 Identities=15% Similarity=0.415 Sum_probs=22.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.++.|+|+|++||||||+++.|++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999999864
No 214
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.36 E-value=0.00014 Score=61.58 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+.|+|+||+||||||+++.|++..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998743
No 215
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=97.35 E-value=0.00034 Score=69.65 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=47.1
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++| |++||+|++|||..+. +.+++..+++...+.+.+.
T Consensus 363 ~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~--~~~~~~~~l~~~~~~v~l~ 415 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQ 415 (436)
T ss_pred CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhCCCeEEEE
Confidence 479999999999999999 9999999999999996 4589999998877776664
No 216
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=97.34 E-value=1e-05 Score=77.63 Aligned_cols=53 Identities=23% Similarity=0.451 Sum_probs=49.0
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHccc
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 291 (366)
-..||+||+|||.|..|+.+|+++++|+|+.||+++++++.+++||+++.++.
T Consensus 36 ~~~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~ 88 (337)
T 4dey_A 36 PVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKE 88 (337)
T ss_dssp CCCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESST
T ss_pred CccEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCC
Confidence 45799999999999999999999999999999999999999999999987653
No 217
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=97.33 E-value=1.3e-05 Score=76.20 Aligned_cols=46 Identities=33% Similarity=0.775 Sum_probs=37.2
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChh---------hHHHHHccc
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPN---------WWQAYREGE 291 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~ 291 (366)
|++|||||+|+|.|..+. +|+|++||+++++++.+++ ||++.+++.
T Consensus 2 gdsfyVRalfdy~~~~~~-------eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~ 56 (308)
T 3kfv_A 2 GDSFYIRTHFELEPSPPS-------GLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGR 56 (308)
T ss_dssp -CCEEEEECSCBCCCSSS-------BCCBCTTCEEEEEEC-------------CEEEEEECT
T ss_pred CccEEEEEecCcCCCCcc-------cCCCccCCEEEEccccCCCcccccccCceEEEEecCC
Confidence 899999999999998665 8999999999999997666 999988754
No 218
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.32 E-value=7.8e-06 Score=80.52 Aligned_cols=101 Identities=21% Similarity=0.321 Sum_probs=65.2
Q ss_pred hhhhHHhcCCCeeeeeccccc---ccccccccCC-Cccccccceeccccccccccc-ccCCCeeeeeeecCCCCCCCCCc
Q psy16959 184 TKLDKLQAGIPTLNFDIYALT---ETWLTDEIND-PELGFSKFNVFRSDRTKQTSH-KSDGGGMHVIAHFDYDPEDDMYI 258 (366)
Q Consensus 184 ~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~G~glYirAl~~~~p~~d~~~ 258 (366)
+...-|+.|..++.+|=..++ ...+...+.. .......+.+.|.+....... ...|.+||+||+|+|.|..+.
T Consensus 44 A~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~~~~~~~~~~~~~~~~~vral~dy~~~~~~-- 121 (391)
T 3tsz_A 44 AAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPY-- 121 (391)
T ss_dssp HHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHHGGGTSSCCSCCEEEEECSCBCCSSTT--
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCCcccccccccccccccccccccccCCCCCC--
Confidence 333335667777766633332 2222222222 233445567777554443322 234899999999999986544
Q ss_pred chhhhccCccchhHHHHHhc---CChhhHHHHHccc
Q psy16959 259 PCKELGMSFQKGDILHVISQ---DDPNWWQAYREGE 291 (366)
Q Consensus 259 ~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~ 291 (366)
+|+|++||+++++++ .+++||++++++.
T Consensus 122 -----~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~ 152 (391)
T 3tsz_A 122 -----GLSFNKGEVFRVVDTLYNGKLGSWLAIRIGK 152 (391)
T ss_dssp -----BCCBCTTCEEEEEESSGGGSSSEEEEEEECG
T ss_pred -----cceEccCCEEEEEeccCCCCCCeEEEEEeCC
Confidence 899999999999999 6889999977654
No 219
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=97.32 E-value=0.00026 Score=73.29 Aligned_cols=60 Identities=23% Similarity=0.242 Sum_probs=46.8
Q ss_pred CcEEEEeCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc--CCCcEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG--LTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~--~~~~v~l~ 64 (366)
|+.+...+++++|..|.++|||+++| |++||+|++|||..+.. ++...+++. .+.++.+.
T Consensus 488 G~~~~~~~~gv~V~~V~~~spA~~AG-L~~GD~I~aInG~~v~~---~~l~~~l~~~~~g~~v~l~ 549 (597)
T 4fgm_A 488 GAKYKASPQGLDVLNVYHDESAYHAG-LSAGDKIIAIDHLQATE---QSVKRILERYIPGDTVTIH 549 (597)
T ss_dssp SEEEEEETTEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCT---TTHHHHHTTCCTTCEEEEE
T ss_pred ceEEeccCCeEEEEEeCCCChHHHCC-CCCCCEEEEECCEECCH---HHHHHHHHhcCCCCEEEEE
Confidence 56677777899999999999999999 99999999999999953 445555553 23455544
No 220
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.31 E-value=7.2e-05 Score=67.72 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=25.0
Q ss_pred CCCCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 101 SNEKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
...+++|+|+||+||||+|++.+|++..+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 34667899999999999999999998753
No 221
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=97.31 E-value=0.00035 Score=62.55 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=42.3
Q ss_pred CeEEEEEEcCCchhcccCCCCCC-CeEEEEcCEEcCCCCHHHHHHHHHc-CCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEG-DEILEINGIEIRGKSIHIVCDILVG-LTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~G-D~Il~VNg~~v~~~~~~~a~~~Lk~-~~~~v~l~ 64 (366)
.|++|..|.++|||+++| |+.| |.|++|||..+.+...... .+++. ....+.+.
T Consensus 16 ~G~~V~~V~~~SpA~~AG-L~~G~D~I~~ing~~v~~~~~~~~-~~~~~~~g~~v~l~ 71 (209)
T 3rle_A 16 EGYHVLRVQENSPGHRAG-LEPFFDFIVSINGSRLNKDNDTLK-DLLKANVEKPVKML 71 (209)
T ss_dssp EEEEEEEECTTSHHHHTT-CCTTTEEEEEETTEECCSSSSHHH-HHHHHTTTSCEEEE
T ss_pred CEEEEEEECCCCHHHHCC-CCcCCeEEEEECCEECcCHHHHHH-HHHhcCCCCEEEEE
Confidence 579999999999999999 9999 9999999999988764333 33333 34555555
No 222
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.30 E-value=0.00013 Score=63.22 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++.+|+|+|++||||||++..|++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999999864
No 223
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=97.30 E-value=0.00029 Score=53.91 Aligned_cols=52 Identities=15% Similarity=0.290 Sum_probs=39.8
Q ss_pred eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
|+.|..+.++|||+++| |++||.|++|||..+.+. +++..++... ...+.+.
T Consensus 20 G~~V~~~~~~s~A~~aG-l~~GD~I~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~ 73 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLT 73 (87)
T ss_dssp EEEEEECSCHHHHHHTT-CCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEE
T ss_pred EEEEEeCCCCCHHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEE
Confidence 56777788888889999 999999999999999754 6666677543 3344443
No 224
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.29 E-value=8.5e-05 Score=67.49 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=29.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK 143 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr 143 (366)
.+..|+|.||+||||||++..|++.... +..+ .+|+.|.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~-~~~~~p~ 63 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV-IMTREPG 63 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE-EEECTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc-eeecCCC
Confidence 5578999999999999999999987543 3333 3455554
No 225
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.29 E-value=0.0004 Score=68.64 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=23.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+.+|+|+|++||||||+++.|++..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998764
No 226
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.25 E-value=0.00013 Score=65.58 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=33.1
Q ss_pred HHHHHHHc--CCeEEEcccchhh---hccc----cCCCCc-EEEEEeCCCHHHHHHHHHhcC
Q psy16959 303 AIRTVVNA--GKICVLNLHPQSL---KILR----SSDLKP-FVIFVAPPPFELLKQKRIRRG 354 (366)
Q Consensus 303 ~i~~vir~--~k~~~l~~~p~~~---~~l~----~~~~~p-~vi~~~~~~~~~l~~~~~~r~ 354 (366)
-++..+.. ++.+++++.|... +.++ ..+..| .+|++. .+.+.+.+|+..|+
T Consensus 67 ~i~~~l~~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~-~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 67 MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEIL-LPREVAKNRIMGRR 127 (223)
T ss_dssp HHHHHHHHHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEE-CCHHHHHHHHHTBC
T ss_pred HHHHHHhcccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEE-CCHHHHHHHHHccc
Confidence 34555555 8889999877542 2232 224455 455555 67899999999887
No 227
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.24 E-value=0.00049 Score=60.58 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+.+|+|+|++||||||+++.|++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999864
No 228
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.11 E-value=5.1e-05 Score=66.03 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=20.9
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.|+|.|++||||||+++.|++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999864
No 229
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.09 E-value=0.00074 Score=59.21 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=22.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+..|+|+|++||||||+++.|++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578999999999999999999864
No 230
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.09 E-value=0.00034 Score=65.31 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.8
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+++|+|+|++||||||+++.|++.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999975
No 231
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=97.06 E-value=0.0014 Score=53.88 Aligned_cols=54 Identities=24% Similarity=0.200 Sum_probs=43.3
Q ss_pred eCCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc-C-CCcEEEe
Q psy16959 7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG-L-TGQEMTM 64 (366)
Q Consensus 7 ~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~-~-~~~v~l~ 64 (366)
...+++|..|.++|||+++ |+.||.|++|||..+.+. +++...+.. . ...+.+.
T Consensus 23 ~~~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~ 78 (125)
T 2hga_A 23 QPDGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINIT 78 (125)
T ss_dssp CCCCEEEEEECSSSGGGGT--SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEE
T ss_pred CCCceEEEEECCCChHHHh--cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEE
Confidence 3568999999999999998 999999999999999754 677777764 2 3444554
No 232
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.06 E-value=0.00042 Score=60.76 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=23.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.++.|+|+|++||||||+++.|++..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456789999999999999999997753
No 233
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=97.05 E-value=0.0013 Score=52.13 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=37.8
Q ss_pred eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc--CCCcEEEe
Q psy16959 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG--LTGQEMTM 64 (366)
Q Consensus 10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~--~~~~v~l~ 64 (366)
|+.|....++|||+++| |++||.|++|||..+.+.. ++..++.. ....+.+.
T Consensus 38 G~~V~~~~pas~A~~aG-l~~GDvI~~ing~~v~~~~--d~~~~~~~~~~g~~v~l~ 91 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIG-LQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLT 91 (105)
T ss_dssp EEEEEECSCTHHHHHHT-CCTTCEEEEETTEETTSTT--HHHHHHHHHTTCSEEEEE
T ss_pred EEEEecCCCCCHHHHcC-CCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCeEEEE
Confidence 45567777777889999 9999999999999998774 44455543 23455544
No 234
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=97.04 E-value=0.0018 Score=61.56 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=44.3
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc-CC-CcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG-LT-GQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~-~~-~~v~l~ 64 (366)
.+++|..|.++|||+++| |++||.|++|||..+.+ .+++...|+. .. ..+.+.
T Consensus 244 ~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~ 298 (318)
T 1te0_A 244 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAIS--ALETMDQVAEIRPGSVIPVV 298 (318)
T ss_dssp CCEEEEEECTTSTTTTTC-CCTTCCEEEETTEECCC--HHHHHHHHHTSCTTCEEEEE
T ss_pred CcEEEEEeCCCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEE
Confidence 689999999999999999 99999999999999975 4778888875 33 444544
No 235
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=97.00 E-value=1.7e-05 Score=79.71 Aligned_cols=102 Identities=22% Similarity=0.324 Sum_probs=65.8
Q ss_pred hhhhhHHhcCCCeeeeeccccc---ccccccccCC-Cccccccceeccccccccccccc-CCCeeeeeeecCCCCCCCCC
Q psy16959 183 RTKLDKLQAGIPTLNFDIYALT---ETWLTDEIND-PELGFSKFNVFRSDRTKQTSHKS-DGGGMHVIAHFDYDPEDDMY 257 (366)
Q Consensus 183 ~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~G~glYirAl~~~~p~~d~~ 257 (366)
++...-|+.|..++.+|=..+. ...+...+.. +......+.+.|.+........+ .|++||+||+|+|.|..+.
T Consensus 35 pA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g~~~~~~~~~~~g~s~yVralfdy~~~~~~- 113 (468)
T 3shw_A 35 PAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPY- 113 (468)
T ss_dssp HHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECHHHHHHHHHHTCCCCEEEEECSCBCCSSTT-
T ss_pred HHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCccchhhhccccccccccccccCcCCCCCC-
Confidence 3333335667777776633332 2223333322 23445556777755443332222 3899999999999887643
Q ss_pred cchhhhccCccchhHHHHHhc---CChhhHHHHHccc
Q psy16959 258 IPCKELGMSFQKGDILHVISQ---DDPNWWQAYREGE 291 (366)
Q Consensus 258 ~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~ 291 (366)
+|+|++||+++++++ .+++||++++++.
T Consensus 114 ------~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~ 144 (468)
T 3shw_A 114 ------GLSFNKGEVFRVVDTLYNGKLGSWLAIRIGK 144 (468)
T ss_dssp ------BCCBCTTCEEEEEESSGGGCTTEEEEEEECT
T ss_pred ------CceEccCCEEEEeecccCCCCCeEEEEEcCC
Confidence 899999999999999 6889999987654
No 236
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=96.99 E-value=0.0014 Score=62.42 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=47.0
Q ss_pred CcEEEEe--CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 1 G~~i~~~--~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
|+.+... ..+++|..|.++|||+++| |+.||+|++|||..+.+. .+....+... ..++.+.
T Consensus 232 Gi~~~~~~~~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~ 296 (324)
T 1y8t_A 232 GVQVTNDKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALT 296 (324)
T ss_dssp CEEEESCSSSSSEEEEEECTTSTTTTTT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEE
T ss_pred ceEeeeccCCCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEE
Confidence 4555432 4689999999999999999 999999999999999754 6777777653 3444544
No 237
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.97 E-value=2.8e-05 Score=70.88 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=26.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCc----ceeeeccCCCCC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRF----AAAIPHTSRPMK 143 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~----~~~~~~tTr~pr 143 (366)
.+..|+|.||+||||||++..|++..... +..+ .+||.|+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~rep~ 67 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV-VVTREPG 67 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE-EEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee-eeecCCC
Confidence 35679999999999999999999864322 3333 3677774
No 238
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=96.92 E-value=0.0014 Score=63.22 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=44.3
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
.|++|..|.++|||+++| |++||+|++|||..+. +.++....+... ..++.+.
T Consensus 263 ~G~~V~~V~~~spA~~aG-L~~GDvI~~ing~~v~--~~~~l~~~l~~~~~g~~v~l~ 317 (345)
T 3stj_A 263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLN--SFAELRSRIATTEPGTKVKLG 317 (345)
T ss_dssp SSEEEEEECTTSHHHHHT-CCTTCEECEETTEECS--CHHHHHHHHHTSCTTCEEEEE
T ss_pred ceEEEEEeccCChHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHhcCCCCEEEEE
Confidence 689999999999999999 9999999999999997 457888888663 3444443
No 239
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=96.90 E-value=0.00057 Score=67.41 Aligned_cols=50 Identities=32% Similarity=0.420 Sum_probs=40.9
Q ss_pred eEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEE
Q psy16959 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMT 63 (366)
Q Consensus 10 gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l 63 (366)
.++|..|.+||||+++| |++||+|++|||..+.+.. +..++++...++++
T Consensus 91 ~~~V~~V~~gsPA~~AG-L~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l 140 (403)
T 3k50_A 91 NALISYVVPGSPAEEAG-LQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQI 140 (403)
T ss_dssp EEEEEEECTTSHHHHTT-CCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEE
T ss_pred eEEEEEeCCCChHHHcC-CCCCCEEEEECCEEccchh---HHHHhhCCCCEEEE
Confidence 47899999999999999 9999999999999998885 55667663333343
No 240
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=96.88 E-value=0.001 Score=66.50 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=46.4
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.|++|..|.++|||+++| |++||.|++|||..+.+ .+++..+|+.....+.+.
T Consensus 386 ~Gv~V~~V~~gspA~~aG-L~~GD~I~~Vng~~v~~--~~~~~~~l~~~~~~v~l~ 438 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAG-IRPGDIIISANKKPVTD--VKSLQTIAQEKKKELLVQ 438 (451)
T ss_dssp EEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHTTSSCSCEEEE
T ss_pred CceEEEEECCCCHHHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhcCCCeEEEE
Confidence 478999999999999999 99999999999999975 588999998866666654
No 241
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.87 E-value=0.001 Score=59.46 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=21.4
Q ss_pred cEEEeCCCCCChHHHHHHHHhccC
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.|+|+||+||||+|++.+|++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999998753
No 242
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=96.81 E-value=0.0016 Score=65.20 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=43.3
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
.|++|..|.++|||+++| |+.||+|++|||..+.+. +++...+... ..++.+.
T Consensus 282 ~G~~V~~V~~~spA~~aG-L~~GDvI~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~ 336 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAG-LKAGDIITQINDTKITQA--TQVKTTISLLRVGSTVKII 336 (451)
T ss_dssp CCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEE
T ss_pred ceEEEEecCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEE
Confidence 689999999999999999 999999999999999765 6677766642 3444444
No 243
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=96.81 E-value=0.0021 Score=61.37 Aligned_cols=52 Identities=27% Similarity=0.382 Sum_probs=44.5
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.|++|..|.++|||+++| |+.||.|++|||..+.+ .++....++. ...+.+.
T Consensus 256 ~gv~V~~V~~~spA~~aG-l~~GDvI~~ing~~v~~--~~~l~~~l~~-~~~v~l~ 307 (325)
T 1lcy_A 256 HGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQ 307 (325)
T ss_dssp SCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCS--HHHHHHHHTT-CSSEEEE
T ss_pred CCeEEEEeCcCChHHHCC-CCCCCEEEEECCEEcCC--HHHHHHHHhC-CCeEEEE
Confidence 589999999999999999 99999999999999964 5788888876 4555554
No 244
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=96.79 E-value=0.00082 Score=60.09 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=41.3
Q ss_pred CeEEEEEEcCCchhcccCCCCC-CCeEEEEcCEEcCCCCHHHHHHHHHcCC-CcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHE-GDEILEINGIEIRGKSIHIVCDILVGLT-GQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~-GD~Il~VNg~~v~~~~~~~a~~~Lk~~~-~~v~l~ 64 (366)
.+++|..|.++|||+++| |++ ||.|++|||. +.+ .++....++... .++.+.
T Consensus 112 ~Gv~V~~V~~~spA~~aG-l~~~GD~I~~ing~-v~~--~~~l~~~l~~~~g~~v~l~ 165 (209)
T 3rle_A 112 NVWHVLEVESNSPAALAG-LRPHSDYIIGADTV-MNE--SEDLFSLIETHEAKPLKLY 165 (209)
T ss_dssp SCEEEEEECTTSHHHHHT-CCTTTEEEEEESSC-CCS--SSCHHHHHHHTTTSCEEEE
T ss_pred cceEEEEeCCCChHHHCC-CCCCCCEEEECCCE-eCC--HHHHHHHHHhCCCCeEEEE
Confidence 689999999999999999 999 9999999997 543 456667776653 445554
No 245
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=96.79 E-value=0.0015 Score=64.98 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=42.9
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
.|++|..|.++|||+++| |+.||+|++|||..+.+. +++...+... ...+.+.
T Consensus 263 ~G~~V~~V~~~spA~~aG-L~~GD~I~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~ 317 (436)
T 4a8c_A 263 RGAFVSEVLPGSGSAKAG-VKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLG 317 (436)
T ss_pred cceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEE
Confidence 689999999999999999 999999999999999865 5565555532 3455554
No 246
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.73 E-value=0.007 Score=53.76 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.5
Q ss_pred CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
..|+|.|++||||||++..|++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999875
No 247
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.72 E-value=0.00049 Score=61.47 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=44.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceee---------e---ccCCCCCCCCCCCcceee----cCHHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAI---------P---HTSRPMKDGEVDGQDYHF----ITRAQFELDILA 166 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~---------~---~tTr~pr~~E~~g~~y~~----vs~~ef~~~~~~ 166 (366)
..+.|+|+||||+|||+|+..|+++...+ ++. + .-|++|. ++||+ ++..++.+.+..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~~i-IsdDs~~v~~~~~~~liGtak~~------i~h~lEiRGigiid~~~~f~~ 105 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGHRL-IADDRVDVYQQDEQTIVGAAPPI------LSHLLEIRGLGIIDVMNLFGA 105 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTCEE-EESSEEEEEECSTTCEEEECCSS------STTEEEETTTEEEEHHHHHCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCCeE-EecchhheeecCCceEEEECCcc------ccccccccceeEEcccccCCH
Confidence 35779999999999999999999864311 111 1 1245543 66777 777777778888
Q ss_pred cceeEEE
Q psy16959 167 RKFIEHG 173 (366)
Q Consensus 167 g~fle~~ 173 (366)
+.|...+
T Consensus 106 ~~f~~~a 112 (205)
T 2qmh_A 106 GAVREDT 112 (205)
T ss_dssp TSBCSCC
T ss_pred HHHHhcC
Confidence 8775543
No 248
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=96.68 E-value=0.0017 Score=62.59 Aligned_cols=53 Identities=25% Similarity=0.314 Sum_probs=44.1
Q ss_pred CeEEEEEEcCCchhcccCCCCC-----------CCeEEEEcCEEcCCCCHHHHHHHHHcC--CCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHE-----------GDEILEINGIEIRGKSIHIVCDILVGL--TGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~-----------GD~Il~VNg~~v~~~~~~~a~~~Lk~~--~~~v~l~ 64 (366)
.|++|..|.++|||+++| |+. ||+|++|||..+.+. +++...|... ..++.+.
T Consensus 251 ~Gv~V~~V~~~spA~~AG-l~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~ 316 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAG-LQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVE 316 (348)
T ss_dssp SSEEEEECCSSSHHHHHT-CCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEE
T ss_pred ceEEEEEecCCChHHHcC-CccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEE
Confidence 589999999999999999 998 999999999999866 6788888543 3455554
No 249
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.40 E-value=0.0008 Score=59.73 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=20.4
Q ss_pred EEEeCCCCCChHHHHHHHHhcc
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
|+|+|++||||||++..|++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999865
No 250
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=96.39 E-value=0.0066 Score=66.19 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=51.0
Q ss_pred CcEEEEeCCeEEEEEEcCC--------chhcccC-CCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 1 GATIRNEGDAVIVGRVVKG--------GLADRTG-LLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 1 G~~i~~~~~gi~I~~v~~g--------s~A~~~G-~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
|+.+...+++++|..+.+| |||+++| .|+ ||+|++|||..+.++. ++..+|++..|+.+.+
T Consensus 740 G~~~~~~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l 809 (1045)
T 1k32_A 740 ACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARI 809 (1045)
T ss_dssp SEEEEEETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEE
T ss_pred cEEEEEeCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEE
Confidence 5667767889999999998 9999999 388 9999999999999886 7788888876655443
No 251
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.16 E-value=0.0014 Score=57.01 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=27.6
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCCC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEV 147 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E~ 147 (366)
.+.++|+||+|||||||+..|..........+..++..++..++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~~i 49 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDV 49 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcccc
Confidence 46789999999999999999986532223333344444544433
No 252
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.06 E-value=0.0037 Score=52.97 Aligned_cols=26 Identities=35% Similarity=0.652 Sum_probs=22.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++..|+|+||+||||||+++.|+...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999764
No 253
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.97 E-value=0.0033 Score=53.94 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.5
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++.|+|+||+||||||+++.|++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999864
No 254
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=95.94 E-value=0.0012 Score=65.87 Aligned_cols=53 Identities=25% Similarity=0.314 Sum_probs=0.0
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|..|.++|||+++| |+.||.|++|||..+. +.+++..+|+...+.+.+.
T Consensus 383 ~gv~V~~V~~gspA~~aG-L~~GDiI~~vng~~v~--~~~~l~~~l~~~~~~v~l~ 435 (448)
T 1ky9_A 383 QGVVVNNVKTGTPAAQIG-LKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALN 435 (448)
T ss_dssp --------------------------------------------------------
T ss_pred CeEEEEEecCCCHHHHcC-CCCCCEEEEECCEECC--CHHHHHHHHHcCCCeEEEE
Confidence 578999999999999999 9999999999999997 4578888887766655443
No 255
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.93 E-value=0.0034 Score=54.09 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=23.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+.+++|+||+|||||||++.|+..+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999999764
No 256
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.92 E-value=0.0022 Score=56.25 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=28.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK 143 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr 143 (366)
.+..|+|+|++||||||++..|++..+...+.+ .+++.|.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~~ 48 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFPN 48 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESSC
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecCC
Confidence 356799999999999999999998633223333 3355553
No 257
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.92 E-value=0.0023 Score=54.91 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+.|+|.|++||||||+++.|++..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999998643
No 258
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.92 E-value=0.0047 Score=52.91 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=23.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.++.|+|+|++||||||+++.|++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999774
No 259
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=95.88 E-value=0.0014 Score=62.77 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=0.0
Q ss_pred CCeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 8 ~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
..+++|..|.++|||+++| |+.||+|++|||..+.+ .+++...++. ..++.+.
T Consensus 253 ~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~ 305 (332)
T 3num_A 253 ISGAYIIEVIPDTPAEAGG-LKENDVIISINGQSVVS--ANDVSDVIKR-ESTLNMV 305 (332)
T ss_dssp ---------------------------------------------------------
T ss_pred CCceEEEEeccCCChHHcC-CCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEE
Confidence 3578999999999999999 99999999999999964 4566666654 3444443
No 260
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.80 E-value=0.0046 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=20.1
Q ss_pred CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+|+|+||+||||||+++.| +..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 46889999999999999999 543
No 261
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.65 E-value=0.0027 Score=56.53 Aligned_cols=33 Identities=9% Similarity=0.163 Sum_probs=25.7
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceee
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAI 135 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~ 135 (366)
.+..|+|+||+||||||+++.|++..+...+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 346799999999999999999998754333333
No 262
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.64 E-value=0.0045 Score=52.86 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=18.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.+..|+|+|++||||||+++.|++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356799999999999999999997643
No 263
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.63 E-value=0.0061 Score=52.17 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.2
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+.+|+|.||+||||||+++.|++..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999864
No 264
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=95.62 E-value=0.00026 Score=66.96 Aligned_cols=48 Identities=44% Similarity=0.760 Sum_probs=41.9
Q ss_pred eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHcc
Q psy16959 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290 (366)
Q Consensus 241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 290 (366)
+||++|+|||.|..++.+| ..+|+|++||+++++++.+++||++++.+
T Consensus 1 s~~vrAlydy~~~~~~~~p--~~eLsf~~GDil~V~~~~d~~WW~a~~~~ 48 (295)
T 1kjw_A 1 GFYIRALFDYDKTKDCGFL--SQALSFRFGDVLHVIDAGDEEWWQARRVH 48 (295)
T ss_dssp CEEEEESSCBCHHHHHCCC--SSBCCBCTTCEEEEEECCSSSEEEEEECC
T ss_pred CEEEEEeeccCCCCCCCCC--CcCCcCCCCCEEEEEEeCCCCeEEEEECC
Confidence 5899999999988777666 34999999999999999999999997664
No 265
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.60 E-value=0.0066 Score=53.09 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=23.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
..+.|+|+||+||||||+++.|++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999764
No 266
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.59 E-value=0.0063 Score=52.20 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=22.2
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+..|+|+|++||||||++..|++..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999864
No 267
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.58 E-value=0.0047 Score=53.54 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=21.3
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.+.|+|++|||||||+.+|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357889999999999999999875
No 268
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=95.56 E-value=0.0019 Score=46.20 Aligned_cols=42 Identities=19% Similarity=0.590 Sum_probs=35.0
Q ss_pred CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
+|-.+||+++|.|..++. +|+|+.||++.++++.+++||..+
T Consensus 2 sg~~~rAlydy~~~~~~e------~Ls~~~Gd~i~v~~~~~~~Ww~g~ 43 (60)
T 2lx7_A 2 SGARCRTLYPFSGERHGQ------GLRFAAGELITLLQVPDGGWWEGE 43 (60)
T ss_dssp CSCEEEESCCCCSCCCSS------CCCCCTTCEEEBSCCCTTSCEEEE
T ss_pred CCCEEEECcccCCCCCCC------CccCCCCCEEEEeEecCCCeEEEE
Confidence 356789999999887651 499999999999999888998764
No 269
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.54 E-value=0.0072 Score=52.90 Aligned_cols=26 Identities=15% Similarity=0.477 Sum_probs=23.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+.+++|+||+|||||||++.|+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999998764
No 270
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.54 E-value=0.0063 Score=53.26 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=22.4
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.+|+|+||+|||||||++.|+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999875
No 271
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.52 E-value=0.0052 Score=53.02 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=20.7
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+++|+||+|+||||+++.|+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999863
No 272
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.47 E-value=0.0085 Score=50.59 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=22.4
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+.|+|+|++||||||+++.|++..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999864
No 273
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.47 E-value=0.0086 Score=51.71 Aligned_cols=25 Identities=16% Similarity=0.469 Sum_probs=22.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+..|+|+|++||||||+++.|++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999987
No 274
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.37 E-value=0.0074 Score=51.76 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+..|+|.|++||||||+++.|++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999764
No 275
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.34 E-value=0.012 Score=51.17 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=23.2
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+..|+|.|++||||||++..|++...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 29 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIP 29 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHC
Confidence 46799999999999999999998753
No 276
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.31 E-value=0.065 Score=48.63 Aligned_cols=43 Identities=12% Similarity=0.311 Sum_probs=28.9
Q ss_pred CeEEEcccchhhh---ccccCCCCc-EEEEEeCCCHHHHHHHHHhcCC
Q psy16959 312 KICVLNLHPQSLK---ILRSSDLKP-FVIFVAPPPFELLKQKRIRRGD 355 (366)
Q Consensus 312 k~~~l~~~p~~~~---~l~~~~~~p-~vi~~~~~~~~~l~~~~~~r~~ 355 (366)
+-++||+-|.... .+......| .||++. .+.+.+.+|+..|.-
T Consensus 87 ~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ld-vp~e~l~~Rl~~R~~ 133 (230)
T 3gmt_A 87 NGYLFDGFPRTIAQADAMKEAGVAIDYVLEID-VPFSEIIERMSGRRT 133 (230)
T ss_dssp TCEEEESCCCSHHHHHHHHHTTCCCSEEEEEC-CCHHHHHHHHHTEEE
T ss_pred CCeEecCCCCcHHHHHHHHHhCCCccEEEEEe-CCHHHHHHHHHcCCc
Confidence 4578999885543 333333444 556655 778999999999963
No 277
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.29 E-value=0.0092 Score=52.60 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..+.++.|+||+|||||||++.|+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999864
No 278
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.27 E-value=0.0099 Score=50.49 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=22.1
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+..++|+||+||||||+++.|+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4678999999999999999998754
No 279
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.25 E-value=0.01 Score=51.93 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.7
Q ss_pred CCCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 101 SNEKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 101 ~~~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
...+.+|.|+|++||||||++..|++..
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3445678999999999999999999864
No 280
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.22 E-value=0.0097 Score=50.69 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.7
Q ss_pred CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+.|+|+||+||||||+++.|++..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999864
No 281
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=95.17 E-value=0.0031 Score=44.13 Aligned_cols=42 Identities=33% Similarity=0.782 Sum_probs=36.4
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
|.+.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 1 gp~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~ 42 (58)
T 2drm_A 1 GPGIQVKALYDYDAQTGD-------ELTFKEGDTIIVHQKDPAGWWEGE 42 (58)
T ss_dssp CCCEEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCTTSEEEEE
T ss_pred CCCcEEEECccCCCCCcC-------CcCCCCCCEEEEEEecCCCEEEEE
Confidence 678899999999998776 799999999999999888888653
No 282
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=95.17 E-value=0.0067 Score=60.50 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=43.4
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHc--CCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG--LTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~--~~~~v~l~ 64 (366)
.+++|..|.++|||+++| |+.||+|++|||..+.+. .++...+.. ...++.+.
T Consensus 286 ~G~~V~~V~~gspA~~AG-L~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~ 340 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLG 340 (448)
T ss_dssp CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEE
T ss_pred CceEEEEeccCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEE
Confidence 589999999999999999 999999999999999876 567767754 24445444
No 283
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.11 E-value=0.01 Score=51.61 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=22.7
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+..|+|.|++||||||++..|++..+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35789999999999999999998643
No 284
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.08 E-value=0.009 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.6
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+..|+|+|++||||||++..|++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999874
No 285
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.05 E-value=0.013 Score=52.88 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=22.2
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+..++|+||+||||||+++.|++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999654
No 286
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.02 E-value=0.0079 Score=53.86 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=29.6
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK 143 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr 143 (366)
+..|+|.|++||||||++..|++.....+..+ .+||.|.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~~p~ 44 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTREPG 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEESSC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-ccccCCC
Confidence 46789999999999999999998644334444 4667774
No 287
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=95.02 E-value=0.0031 Score=45.57 Aligned_cols=42 Identities=36% Similarity=0.771 Sum_probs=36.1
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
|...+++|+++|.+..++ +|+|+.||++.++.+.+.+||..+
T Consensus 1 g~~~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~ 42 (65)
T 1b07_A 1 GSAEYVRALFDFNGNDEE-------DLPFKKGDILRIRDKPEEQWWNAE 42 (65)
T ss_dssp -CCCEEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEE
T ss_pred CCceEEEECCcCCCCCCC-------ccCCcCCCEEEEEEecCCCeEEEE
Confidence 456789999999988776 899999999999999888998774
No 288
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.02 E-value=0.013 Score=51.77 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.8
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+..|.|+||+||||||+++.|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998753
No 289
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.01 E-value=0.0099 Score=53.02 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=22.9
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+..|+|.|++||||||+++.|++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999998754
No 290
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.98 E-value=0.01 Score=50.81 Aligned_cols=25 Identities=24% Similarity=0.656 Sum_probs=22.0
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+..|+|+|++||||||+++.|++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999764
No 291
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.97 E-value=0.012 Score=50.33 Aligned_cols=25 Identities=20% Similarity=0.570 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.++.++|+||+|+|||+|++.++..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999864
No 292
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.96 E-value=0.0066 Score=55.37 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=31.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMK 143 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr 143 (366)
.+.+|+|.|++||||||++..|++.....+.....+||.|+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~ 66 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG 66 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC
Confidence 35689999999999999999999864433444345677774
No 293
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.95 E-value=0.012 Score=51.38 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=20.2
Q ss_pred CcEEEeCCCCCChHHHHHHHHh
Q psy16959 105 RPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
.+|.|+||+||||||+++.|++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999986
No 294
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=94.93 E-value=0.0042 Score=46.11 Aligned_cols=46 Identities=33% Similarity=0.647 Sum_probs=39.8
Q ss_pred cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHc
Q psy16959 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE 289 (366)
Q Consensus 237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 289 (366)
++..+-|++|+++|.+..++ +|+|+.||++.++.+.+..||.....
T Consensus 3 ~~~~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~ 48 (77)
T 2d8j_A 3 SGSSGQYFVALFDYQARTAE-------DLSFRAGDKLQVLDTSHEGWWLARHL 48 (77)
T ss_dssp SSSCCEEEEESSCBCCSSSS-------BCCBCTTCCEEEEECCSSSEEEEEEC
T ss_pred CCCCCCEEEEccCCCCCCCC-------ccCCCCCCEEEEEECCCCCeEEEEEC
Confidence 56678899999999998776 79999999999999988899987554
No 295
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.89 E-value=0.014 Score=53.27 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=23.8
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
..+..|+|+||+||||||++..|++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456789999999999999999998643
No 296
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.85 E-value=0.012 Score=50.87 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.+|.|+|++||||||+++.|++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4467899999999999999999976
No 297
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.82 E-value=0.0037 Score=54.85 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.3
Q ss_pred cEEEeCCCCCChHHHHHHHHhccC
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+|+|.|++||||||++..|++...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997643
No 298
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.81 E-value=0.015 Score=57.65 Aligned_cols=53 Identities=30% Similarity=0.663 Sum_probs=33.4
Q ss_pred cEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCC--CCCcceeecCHH
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGE--VDGQDYHFITRA 158 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E--~~g~~y~~vs~~ 158 (366)
-++|+|++|||||||..+|...........+.||+.+..+. .+|.++.+++..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~ 236 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 236 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCS
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECC
Confidence 47899999999999999998653333445667788776553 366666666543
No 299
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.78 E-value=0.016 Score=51.29 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.7
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
+..|+|+|++||||||++..|++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999998653
No 300
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.69 E-value=0.013 Score=51.42 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.7
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.++.|+||+|||||||++.|+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999875
No 301
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=94.69 E-value=0.0043 Score=45.04 Aligned_cols=41 Identities=24% Similarity=0.528 Sum_probs=35.8
Q ss_pred CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
+.+.+||+++|.|..++ +|+|+.||++.++.+.+..||...
T Consensus 5 ~~~~~~Alydy~a~~~~-------ELs~~~Gd~i~v~~~~~~gWw~g~ 45 (65)
T 2lj0_A 5 DLFSYQALYSYIPQNDD-------ELELRDGDIVDVMEKCDDGWFVGT 45 (65)
T ss_dssp SSCEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEE
T ss_pred cCEEEEEceeECCCCcC-------CcCCCCCCEEEEeEeCCCCEEEEE
Confidence 45678999999998877 899999999999999888998753
No 302
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.63 E-value=0.018 Score=48.43 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.++.++|+||+|+|||+++..+++.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999875
No 303
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.62 E-value=0.0055 Score=45.83 Aligned_cols=45 Identities=22% Similarity=0.551 Sum_probs=38.7
Q ss_pred ccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 236 ~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
.+++.+.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 2 s~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 46 (79)
T 2yun_A 2 SSGSSGRLCKALYSFQARQDD-------ELNLEKGDIVIIHEKKEEGWWFGS 46 (79)
T ss_dssp CSCCCSEEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSCEEEE
T ss_pred CCCCCCCEEEECccCCcCCCC-------CcCCCCCCEEEEEEcCCCCEEEEE
Confidence 357788999999999988766 899999999999998888888764
No 304
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.58 E-value=0.017 Score=52.57 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=22.4
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+.+|.|+|++||||||++..|++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999999864
No 305
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.56 E-value=0.016 Score=49.45 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=19.7
Q ss_pred CCCcEEEeCCCCCChHHHHHHHH
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLM 125 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~ 125 (366)
.+.++.|+||+|||||||++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 35678999999999999999754
No 306
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.52 E-value=0.018 Score=49.67 Aligned_cols=24 Identities=13% Similarity=0.344 Sum_probs=21.4
Q ss_pred cEEEeCCCCCChHHHHHHHHhccC
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.|+|.|++||||||+++.|++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 588999999999999999998653
No 307
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.43 E-value=0.0073 Score=44.85 Aligned_cols=51 Identities=27% Similarity=0.477 Sum_probs=41.0
Q ss_pred cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCCh-hhHHHH
Q psy16959 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-NWWQAY 287 (366)
Q Consensus 237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~ 287 (366)
++..+.+++|+++|.+..+...++..-+|+|+.||++.++.+.+. .||..+
T Consensus 3 ~~~~~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~ 54 (76)
T 2csi_A 3 SGSSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGE 54 (76)
T ss_dssp CCCCSEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEE
T ss_pred CCCCccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEE
Confidence 356778999999999988666666666999999999999998765 577653
No 308
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.40 E-value=0.01 Score=53.71 Aligned_cols=41 Identities=15% Similarity=0.065 Sum_probs=31.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCC-cceeeeccCCCCC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDR-FAAAIPHTSRPMK 143 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~-~~~~~~~tTr~pr 143 (366)
.+..|+|.|++||||||++..|.+.... .+..+..+||.|.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 4568899999999999999999986543 3445555577775
No 309
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.36 E-value=0.021 Score=49.46 Aligned_cols=22 Identities=27% Similarity=0.738 Sum_probs=19.6
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.|+||+|+|||||++.|+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999865
No 310
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.36 E-value=0.023 Score=49.26 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=21.5
Q ss_pred CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++|.|+|++||||||++..|++..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478899999999999999999864
No 311
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=94.34 E-value=0.067 Score=54.51 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=47.2
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCCCHHHHHHHHHcCCCcEEEe
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~a~~~Lk~~~~~v~l~ 64 (366)
.+++|+.|.++++|...| ++.||+|++|||+.+.++ .+..++|+.+++....+
T Consensus 415 ~gVvvs~V~~~s~a~~~g-~~~gdiI~~vNg~~V~s~--~~l~~~l~~~k~~~l~~ 467 (539)
T 4fln_A 415 QIVILSQVLANEVNIGYE-DMNNQQVLKFNGIPIRNI--HHLAHLIDMCKDKYLVF 467 (539)
T ss_dssp CCEEEEEECCCGGGTTCS-SCCSEEEEEETTEECCSH--HHHHHHHHTCCSSEEEE
T ss_pred eEEEEEEecCCchhhhcC-CCCCCEEEeECCEEcCCH--HHHHHHHHHcCCCeEEE
Confidence 579999999999999999 999999999999999755 78899999988876554
No 312
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}
Probab=94.34 E-value=0.0065 Score=44.13 Aligned_cols=41 Identities=34% Similarity=0.562 Sum_probs=35.1
Q ss_pred CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcC---ChhhHHHH
Q psy16959 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD---DPNWWQAY 287 (366)
Q Consensus 240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~ 287 (366)
.|++++|+++|.+..++ +|+|+.||++.++.+. +..||..+
T Consensus 2 ~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~~Ww~g~ 45 (69)
T 1wyx_A 2 LNVLAKALYDNVAESPD-------ELSFRKGDIMTVLEQDTQGLDGWWLCS 45 (69)
T ss_dssp CEEEEEESSCBCCSSTT-------BCCBCTTCEEEEEETTGGGCTTEEEEE
T ss_pred CCEEEEECccCCcCCCC-------ccCCcCCCEEEEeECCCCCCCCcEEEE
Confidence 37899999999988776 8999999999999987 67888763
No 313
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.32 E-value=0.023 Score=49.40 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=21.3
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
++++|+||+|+|||+|+..++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999865
No 314
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.29 E-value=0.024 Score=50.76 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=22.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+..|+|.|++||||||+++.|++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44568999999999999999999875
No 315
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.26 E-value=0.033 Score=50.15 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=23.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.++.++|+||+|+|||++++.+++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45779999999999999999998764
No 316
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.26 E-value=0.026 Score=48.48 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.+|+|+|++||||||++..|++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999875
No 317
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.26 E-value=0.023 Score=48.57 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.8
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.|+|+|++||||||+++.|++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999854
No 318
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.25 E-value=0.028 Score=52.47 Aligned_cols=27 Identities=7% Similarity=0.011 Sum_probs=23.1
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
..++.++|.||+|+|||+|++.+++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345678899999999999999999864
No 319
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.24 E-value=0.031 Score=45.88 Aligned_cols=22 Identities=36% Similarity=0.854 Sum_probs=19.9
Q ss_pred EEEeCCCCCChHHHHHHHHhcc
Q psy16959 107 IVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
|+|+|++|||||+|..+|....
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998753
No 320
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.22 E-value=0.026 Score=51.44 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.1
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
...|.|+||+|||||||++.|++..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999999764
No 321
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.21 E-value=0.032 Score=46.22 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...+|+|.||+|+||+++++.+.+.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999875
No 322
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.19 E-value=0.023 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.6
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+.+|+|+|++||||||++..|++.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999999975
No 323
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.15 E-value=0.027 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..++++|+||+|+|||+++..+++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999864
No 324
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.13 E-value=0.008 Score=43.57 Aligned_cols=44 Identities=20% Similarity=0.693 Sum_probs=37.7
Q ss_pred cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
++..+-+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 3 s~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 46 (68)
T 2dl4_A 3 SGSSGNTYVALYKFVPQENE-------DLEMRPGDIITLLEDSNEDWWKGK 46 (68)
T ss_dssp TCSCCCEEEESSCCCCSSTT-------BCCCCTTCEEEEEECCCSSEEEEE
T ss_pred CCCCCCEEEEeeeECCCCcC-------CcCCCCCCEEEEEEeCCCCEEEEE
Confidence 45667789999999988766 899999999999999888888764
No 325
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.11 E-value=0.026 Score=49.72 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=20.8
Q ss_pred CCcEEEeCCCCCChHHHHHHHHh
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
+.+|+|+|++||||||+++.|++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999987
No 326
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.09 E-value=0.022 Score=49.61 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.2
Q ss_pred CcEEEeCCCCCChHHHHHHHHh
Q psy16959 105 RPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
..|+|+|++||||||+++.|++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3688999999999999999997
No 327
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.08 E-value=0.0089 Score=43.31 Aligned_cols=42 Identities=21% Similarity=0.450 Sum_probs=36.0
Q ss_pred CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHH
Q psy16959 238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286 (366)
Q Consensus 238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 286 (366)
+..+-|++|+++|.+..++ +|+|+.||++.++.+.+..||..
T Consensus 4 ~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g 45 (68)
T 2dmo_A 4 GSSGEAHRVLFGFVPETKE-------ELQVMPGNIVFVLKKGNDNWATV 45 (68)
T ss_dssp CCCSEEEEECSSCCCCSSS-------SCCCCTTCEEEECEECSSSCEEE
T ss_pred CCCCCEEEECcCCCcCCcC-------CCCCCCCCEEEEEEeCCCCEEEE
Confidence 3456789999999988776 79999999999999988888855
No 328
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.08 E-value=0.025 Score=47.52 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...+++|+||+|+|||+|++.++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999864
No 329
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.07 E-value=0.022 Score=47.99 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.++.++|+||+|+|||+++..+++.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999875
No 330
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.07 E-value=0.009 Score=43.94 Aligned_cols=44 Identities=25% Similarity=0.648 Sum_probs=37.0
Q ss_pred cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcC--ChhhHHHH
Q psy16959 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQAY 287 (366)
Q Consensus 237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~ 287 (366)
+++.+.+++|+++|.+..++ +|+|++||++.++.+. +..||..+
T Consensus 3 ~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~Ww~g~ 48 (73)
T 2dm1_A 3 SGSSGGTAVARYNFAARDMR-------ELSLREGDVVRIYSRIGGDQGWWKGE 48 (73)
T ss_dssp CCCSSSEEEESSCBCCCSTT-------BCCBCTTCEEECCBSSSSSSSCEEEE
T ss_pred CCCCCCEEEECccCCcCCCC-------cCCCCCCCEEEEEEecCCCCCeEEEE
Confidence 56788999999999988766 8999999999999986 44787663
No 331
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.04 E-value=0.029 Score=52.59 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=21.9
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..+.+|.|+||+|||||||+..|...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456789999999999999999864
No 332
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.02 E-value=0.029 Score=50.05 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=20.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHH
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLM 125 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~ 125 (366)
...++.|+||+|+|||||++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 45789999999999999999887
No 333
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.98 E-value=0.028 Score=47.95 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.5
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+..|+|+|++||||||+++.|++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999875
No 334
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.98 E-value=0.033 Score=52.60 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=21.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
.+.++.|+||+||||||++..|+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999999985
No 335
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.97 E-value=0.028 Score=50.88 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=22.5
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....++.|+||+|||||||++.|+-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 35678999999999999999999853
No 336
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.93 E-value=0.03 Score=46.91 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.8
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.|+|+|++||||||+++.|++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999864
No 337
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.93 E-value=0.025 Score=49.53 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.++.|+||+||||||++..|...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999864
No 338
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=93.92 E-value=0.0099 Score=42.93 Aligned_cols=44 Identities=32% Similarity=0.563 Sum_probs=37.3
Q ss_pred cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
++..+.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 3 ~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~ 46 (68)
T 2dl3_A 3 SGSSGRPARAKFDFKAQTLK-------ELPLQKGDIVYIYKQIDQNWYEGE 46 (68)
T ss_dssp CSCCSEEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSTTEEEEE
T ss_pred CCCCCcEEEECccCCCCCcC-------CccCCCCCEEEEeEecCCCEEEEE
Confidence 34567899999999988776 799999999999998888888764
No 339
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.92 E-value=0.028 Score=51.16 Aligned_cols=25 Identities=16% Similarity=0.326 Sum_probs=22.1
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+..|.|.||+||||||+++.|++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999764
No 340
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=93.89 E-value=0.0071 Score=42.76 Aligned_cols=41 Identities=27% Similarity=0.606 Sum_probs=35.1
Q ss_pred eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288 (366)
Q Consensus 241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 288 (366)
+.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+.
T Consensus 3 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~ 43 (61)
T 1y0m_A 3 KSAVKALFDYKAQRED-------ELTFTKSAIIQNVEKQDGGWWRGDY 43 (61)
T ss_dssp CCCEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred CCEEEECcCCCcCCCC-------CcCCcCCCEEEEEEecCCCEEEEEE
Confidence 5688999999988776 8999999999999998888887643
No 341
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.89 E-value=0.037 Score=46.80 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.0
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
-|+|+|++|||||||..+|...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999865
No 342
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.89 E-value=0.031 Score=52.92 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=22.1
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..+.++.|+||+|||||||++.|+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34567889999999999999999863
No 343
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.86 E-value=0.033 Score=47.34 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=22.4
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....++.|+||+|+|||||++.|+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999999864
No 344
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=93.85 E-value=0.01 Score=43.01 Aligned_cols=43 Identities=26% Similarity=0.665 Sum_probs=36.9
Q ss_pred CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
+..+.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 4 ~~~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 46 (69)
T 2eqi_A 4 GSSGRTVKALYDYKAKRSD-------ELTFCRGALIHNVSKEPGGWWKGD 46 (69)
T ss_dssp CCCCCEEEESSCBCCCSSS-------CCCBCTTCEEESCCCCSSSCEEEE
T ss_pred CCCCcEEEECeeECCCCcC-------ccCCCCCCEEEEEEcCCCCeEEEE
Confidence 3566889999999988776 899999999999999888888764
No 345
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.85 E-value=0.01 Score=43.17 Aligned_cols=44 Identities=30% Similarity=0.687 Sum_probs=37.2
Q ss_pred cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcC---ChhhHHHH
Q psy16959 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD---DPNWWQAY 287 (366)
Q Consensus 237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~ 287 (366)
++..+.+++|+++|.+..++ +|+|+.||++.++.+. +..||..+
T Consensus 3 ~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~~Ww~g~ 49 (71)
T 2cre_A 3 SGSSGLLARALYDNCPDCSD-------ELAFSRGDILTILEQHVPESEGWWKCL 49 (71)
T ss_dssp CCCCCEEEEESSCCCCSSSS-------BCCCCSSCCEEEEESCCTTSTTEEEEE
T ss_pred CCCCcEEEEECcccCcCCCC-------CCCCCCCCEEEEeEcCCCCCCCcEEEE
Confidence 34667899999999988766 8999999999999986 78888764
No 346
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.84 E-value=0.03 Score=50.63 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.+|.|+||+|||||||++.|+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999875
No 347
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.84 E-value=0.011 Score=43.77 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=38.3
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhc-CChhhHHHH
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ-DDPNWWQAY 287 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~ 287 (366)
-...+++|+++|.+..+...++..-+|+|+.||++.++.+ .+..||...
T Consensus 5 ~~~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~ 54 (75)
T 2ege_A 5 SSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGE 54 (75)
T ss_dssp CCSEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEE
T ss_pred CCCcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEE
Confidence 4567899999999988555554455999999999999974 677787753
No 348
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.81 E-value=0.032 Score=49.11 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.7
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..+..|+|.|++||||||++..|++.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999875
No 349
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.79 E-value=0.01 Score=42.90 Aligned_cols=44 Identities=27% Similarity=0.661 Sum_probs=37.9
Q ss_pred cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
+++..-+++|+++|.+..++ +|+|+.||++.++...+..||..+
T Consensus 3 s~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 46 (68)
T 1x2k_A 3 SGSSGKVFRALYTFEPRTPD-------ELYFEEGDIIYITDMSDTNWWKGT 46 (68)
T ss_dssp CCCCSEEEEESSCCCCCSTT-------BCCCCSSCEEEEEECSCSSEEEEE
T ss_pred CCCCcEEEEECceECCCCCC-------cccCCCCCEEEEEEcCCCCEEEEE
Confidence 45677899999999988776 899999999999999888888774
No 350
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.73 E-value=0.031 Score=51.50 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=21.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....++|+|||||||||+++.|+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 4468999999999999999998753
No 351
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}
Probab=93.71 E-value=0.0078 Score=43.76 Aligned_cols=45 Identities=31% Similarity=0.660 Sum_probs=37.8
Q ss_pred cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288 (366)
Q Consensus 237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 288 (366)
++..+.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+.
T Consensus 3 ~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~ 47 (70)
T 2ecz_A 3 SGSSGGEAIAKFNFNGDTQV-------EMSFRKGERITLLRQVDENWYEGRI 47 (70)
T ss_dssp CCCCCBCEEESSCCCCCSTT-------BCCCCTTCBCEEEEEEETTEEEEEE
T ss_pred CCCCCCEEEECccCCCCCcC-------CcCCCCCCEEEEEEecCCCeEEEEE
Confidence 34667889999999998766 8999999999999987788887644
No 352
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.71 E-value=0.035 Score=50.25 Aligned_cols=25 Identities=20% Similarity=0.647 Sum_probs=22.2
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++.++|+||+|+|||++++.|+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 5679999999999999999998753
No 353
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.69 E-value=0.019 Score=51.44 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=28.9
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCCcce-eeeccCCCCC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAA-AIPHTSRPMK 143 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~-~~~~tTr~pr 143 (366)
+..|+|.|+.||||||++..|.+.....+. .+ .+||.|.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~rep~ 42 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTREPG 42 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeCCC
Confidence 467899999999999999999876433333 22 5677774
No 354
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.66 E-value=0.011 Score=42.90 Aligned_cols=45 Identities=24% Similarity=0.547 Sum_probs=38.4
Q ss_pred cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288 (366)
Q Consensus 237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 288 (366)
++..+.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+.
T Consensus 3 ~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~gW~~g~~ 47 (70)
T 2ct3_A 3 SGSSGTPYRAMYQYRPQNED-------ELELREGDRVDVMQQCDDGWFVGVS 47 (70)
T ss_dssp CCCCCEEEEESSCBCCSSTT-------BCCBCTTEEEEEEEECSSSCEEEEE
T ss_pred CCCCCcEEEECccCCcCCcC-------CccCCCCCEEEEEEECCCCEEEEEE
Confidence 45678899999999988776 7999999999999998888887643
No 355
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=93.66 E-value=0.0099 Score=42.19 Aligned_cols=42 Identities=29% Similarity=0.716 Sum_probs=35.5
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
-.+.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 3 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 44 (62)
T 1uj0_A 3 HMARRVRALYDFEAVEDN-------ELTFKHGELITVLDDSDANWWQGE 44 (62)
T ss_dssp -CCEEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEE
T ss_pred CCCeEEEECccCCCCCcC-------CcCCCCCCEEEEEEeCCCCEEEEE
Confidence 346789999999988776 799999999999999888888764
No 356
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.65 E-value=0.03 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
.+.+|+|+|++||||||+++.|++
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999984
No 357
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.60 E-value=0.035 Score=46.71 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
...|+|+|++||||||+++.|++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999864
No 358
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.60 E-value=0.024 Score=53.06 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=18.3
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+.+|.|.||+||||||+++.|.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999999999875
No 359
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=93.58 E-value=0.011 Score=41.47 Aligned_cols=41 Identities=32% Similarity=0.743 Sum_probs=34.8
Q ss_pred CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
.|.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 3 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 43 (59)
T 2g6f_X 3 LGSVVRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEGT 43 (59)
T ss_dssp CCCEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEE
T ss_pred CCcEEEECceeCCCCcC-------CcCCCCCCEEEEEEecCCCEEEEE
Confidence 45689999999988766 899999999999998888888663
No 360
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A
Probab=93.58 E-value=0.01 Score=42.30 Aligned_cols=44 Identities=34% Similarity=0.650 Sum_probs=37.2
Q ss_pred cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
+.+.+.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 5 ~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 48 (65)
T 3ulr_B 5 SSDLGITAIALYDYQAAGDD-------EISFDPDDIITNIEMIDDGWWRGV 48 (65)
T ss_dssp SSSCCSCEEECSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEE
T ss_pred CCCCceEEEEEeeECCCCcC-------EeeEecCCEEEEEEecCCCEEEEE
Confidence 34677899999999888766 799999999999998888888663
No 361
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.54 E-value=0.043 Score=50.34 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.7
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
...|+|+|++||||||+++.|++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999864
No 362
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.52 E-value=0.038 Score=48.10 Aligned_cols=24 Identities=13% Similarity=0.382 Sum_probs=21.4
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+.+++|+||+|+|||+++..+++.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999865
No 363
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=93.51 E-value=0.011 Score=43.06 Aligned_cols=41 Identities=27% Similarity=0.644 Sum_probs=35.1
Q ss_pred CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
.+.+++|+++|.+..++ +|+|+.||++.++.+.+..||...
T Consensus 2 ~~~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~ 42 (68)
T 2ew3_A 2 DQPCCRGLYDFEPENQG-------ELGFKEGDIITLTNQIDENWYEGM 42 (68)
T ss_dssp CCCEEEESSCBCCCSTT-------BCCBCTTCEEEEEEESSSSEEEEE
T ss_pred CCCEEEEeeeECCCCCC-------ccCCCCCCEEEEEEecCCCEEEEE
Confidence 35688999999988776 899999999999999888888764
No 364
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.51 E-value=0.053 Score=49.62 Aligned_cols=27 Identities=26% Similarity=0.600 Sum_probs=23.4
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.++.++|+||+|+|||+++..+++..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 456799999999999999999997643
No 365
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=93.50 E-value=0.011 Score=42.08 Aligned_cols=42 Identities=29% Similarity=0.740 Sum_probs=35.8
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
....+++|+++|.+..++ +|+|+.||++.++...+..||..+
T Consensus 4 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 45 (64)
T 2ak5_A 4 NSQLVVRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEGT 45 (64)
T ss_dssp CCCCEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCTTSEEEEE
T ss_pred CCCEEEEEccccCCcCcC-------cccCCCCCEEEEeEecCCCEEEEE
Confidence 456789999999988766 899999999999998888888763
No 366
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=93.49 E-value=0.011 Score=41.24 Aligned_cols=42 Identities=26% Similarity=0.634 Sum_probs=35.2
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
|..-+++|+++|.+..++ +|+|+.||++.++...+..||..+
T Consensus 1 g~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 42 (58)
T 1zlm_A 1 GQVKVFRALYTFEPRTPD-------ELYFEEGDIIYITDMSDTNWWKGT 42 (58)
T ss_dssp CCCEEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEE
T ss_pred CCcEEEEECccCCCCCCC-------CccCCCCCEEEEEEeCCCCEEEEE
Confidence 445588999999988766 899999999999999888888763
No 367
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.46 E-value=0.058 Score=49.62 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=22.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+..++|+||+|+|||+++..+++..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
No 368
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=93.46 E-value=0.0098 Score=42.24 Aligned_cols=40 Identities=30% Similarity=0.772 Sum_probs=34.3
Q ss_pred CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHH
Q psy16959 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286 (366)
Q Consensus 240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 286 (366)
...+++|+++|.+..++ +|+|+.||++.++.+.++.||..
T Consensus 20 ~~~~~~alydy~a~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g 59 (62)
T 1g2b_A 20 GKELVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKV 59 (62)
T ss_dssp SSCEEEECSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEE
T ss_pred CceEEEEeeeECCCCCC-------ccCCCCCCEEEEEEecCCCEEEE
Confidence 34688999999988776 89999999999999988888853
No 369
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}
Probab=93.43 E-value=0.013 Score=44.11 Aligned_cols=46 Identities=20% Similarity=0.497 Sum_probs=38.2
Q ss_pred cccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 235 HKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 235 ~~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
+.+.....+++|+++|.+..++ +|+|..||++.++.+.+..||...
T Consensus 12 ~~~~~~~~~~~Alydy~a~~~~-------eLsf~~Gd~I~Vl~~~~~gWw~g~ 57 (79)
T 1z9q_A 12 HMDRMAAPRAEALFDFTGNSKL-------ELNFKAGDVIFLLSRINKDWLEGT 57 (79)
T ss_dssp --CCSSCCCEEESSCCCCSSTT-------BCCCCTTCCBCCCEESSSSEEEEE
T ss_pred CCCCCCceEEEEcCccCCCCCC-------cccccCCCEEEEeEecCCCEEEEE
Confidence 3455778889999999988776 899999999999999888888764
No 370
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=93.39 E-value=0.01 Score=41.78 Aligned_cols=40 Identities=23% Similarity=0.596 Sum_probs=34.6
Q ss_pred eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
+++.+|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 4 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~ 43 (60)
T 1w70_A 4 HMRAEALFDFTGNSKL-------ELNFKAGDVIFLLSRINKDWLEGT 43 (60)
T ss_dssp SCEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECSSSEEEEE
T ss_pred CcEEEECccCCcCCCC-------CccCCCCCEEEEEEeCCCCeEEEE
Confidence 5688999999988776 799999999999999888888663
No 371
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=93.38 E-value=0.011 Score=42.79 Aligned_cols=42 Identities=24% Similarity=0.520 Sum_probs=35.6
Q ss_pred eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHc
Q psy16959 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE 289 (366)
Q Consensus 241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 289 (366)
.++++|+++|.+..++ +|+|+.||++.++.+.+..||..+..
T Consensus 7 ~~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~~ 48 (68)
T 1tg0_A 7 PFKVVAQFPYKSDYED-------DLNFEKDQEIIVTSVEDAEWYFGEYQ 48 (68)
T ss_dssp SEEEEESSCBCCSCTT-------BCCBCTTCEEEEEEECSSSEEEEEEE
T ss_pred CEEEEECeeECcCCcC-------CCCCCCCCEEEEEEecCCCeEEEEEC
Confidence 4688999999988776 89999999999999888888877443
No 372
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.38 E-value=0.042 Score=50.63 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=22.6
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....++.|+||+|||||||++.|+-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999854
No 373
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.35 E-value=0.045 Score=48.97 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999853
No 374
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.34 E-value=0.052 Score=50.05 Aligned_cols=26 Identities=23% Similarity=0.571 Sum_probs=23.0
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
++.++|+||+|+|||+++..+++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998643
No 375
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A
Probab=93.34 E-value=0.011 Score=47.45 Aligned_cols=44 Identities=18% Similarity=0.362 Sum_probs=37.9
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHc
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE 289 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 289 (366)
...+|.+|+|+|.+..++ +|+|+.||++.++.+.+.+||..+..
T Consensus 3 ~~~~~~~Alydy~a~~~~-------ELsf~~Gd~i~vl~~~~~~Ww~g~~~ 46 (108)
T 2rqv_A 3 LGSLYAIVLYDFKAEKAD-------ELTTYVGENLFICAHHNCEWFIAKPI 46 (108)
T ss_dssp CSCCCEEESSCCCCCSSS-------BCCCCSSEEECCCCEETTTEEEECCS
T ss_pred CCCeEEEECCCcCCCCCC-------cCCcCCCCEEEEeEecCCCEEEEEEC
Confidence 345799999999998877 79999999999999988999987543
No 376
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.33 E-value=0.043 Score=49.76 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|||||||++.|+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5578999999999999999999853
No 377
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.32 E-value=0.036 Score=49.79 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=21.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998853
No 378
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.31 E-value=0.043 Score=52.26 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=21.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.+|.|+||+||||||++..|...
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3446789999999999999998764
No 379
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.28 E-value=0.017 Score=43.17 Aligned_cols=45 Identities=29% Similarity=0.612 Sum_probs=38.1
Q ss_pred ccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 236 ~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
.....+.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 12 ~~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 56 (79)
T 1x69_A 12 YENDLGITAVALYDYQAAGDD-------EISFDPDDIITNIEMIDDGWWRGV 56 (79)
T ss_dssp CCCCCCCCEEESSCCCCSSSS-------BCCCCTTCEEEEEEECSSSEEEEE
T ss_pred cCCCCCeEEEECccCCCCCCC-------CcCcCCCCEEEEeEecCCCeEEEE
Confidence 344678899999999988776 899999999999998888888763
No 380
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.24 E-value=0.034 Score=48.90 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
...++.|+||+|+|||||+..|+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999975
No 381
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A
Probab=93.23 E-value=0.013 Score=43.42 Aligned_cols=43 Identities=21% Similarity=0.543 Sum_probs=36.7
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 288 (366)
-...+++|+++|.+..++ +|+|+.||++.++.+.+..||..+.
T Consensus 8 ~~~~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~ 50 (76)
T 2ed1_A 8 NKVRRVKTIYDCQADNDD-------ELTFIEGEVIIVTGEEDQEWWIGHI 50 (76)
T ss_dssp CCCEEEEESSCCCCSSSS-------BCCCCSSCEEEESSCCSSSEEEEEE
T ss_pred CCCeEEEECccCCCCCcC-------CcCcCCCCEEEEEEecCCCEEEEEE
Confidence 346789999999988776 8999999999999988888987753
No 382
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=93.22 E-value=0.012 Score=41.76 Aligned_cols=41 Identities=32% Similarity=0.616 Sum_probs=35.5
Q ss_pred CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
.+.+++|+++|.+..++ +|+|+.||++.++...+..||...
T Consensus 4 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 44 (62)
T 1k4u_S 4 KGSQVEALFSYEATQPE-------DLEFQEGDIILVLSKVNEEWLEGE 44 (62)
T ss_dssp CCEEEECCSCBCCCSSS-------BCCBCSSCEEEEEEESSSSCEEEE
T ss_pred CCeEEEECCCCCcCCCC-------CccCCCCCEEEEEEeCCCCEEEEE
Confidence 45689999999988776 899999999999999888888764
No 383
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=93.22 E-value=0.0088 Score=42.15 Aligned_cols=42 Identities=31% Similarity=0.635 Sum_probs=34.5
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
+...+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 4 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 45 (60)
T 2gnc_A 4 GSPEFAIAKFDYVGRSAR-------ELSFKKGASLLLYHRASEDWWEGR 45 (60)
T ss_dssp --CEEEEESSCBCCSSTT-------BCCBCTTCEEEEEEEEETTEEEEE
T ss_pred CCCEEEEECCCCCcCCcC-------CcCCCCCCEEEEEEecCCCEEEEE
Confidence 456889999999988766 799999999999998777888653
No 384
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=93.19 E-value=0.012 Score=41.30 Aligned_cols=42 Identities=21% Similarity=0.719 Sum_probs=33.4
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcC--ChhhHHHH
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQAY 287 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~ 287 (366)
|...+.+|+++|.+..++ +|+|+.||++.++.+. +..||..+
T Consensus 1 g~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~Ww~g~ 44 (60)
T 1oot_A 1 GSSPKAVALYSFAGEESG-------DLPFRKGDVITILKKSDSQNDWWTGR 44 (60)
T ss_dssp --CCEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSCTTSEEEEE
T ss_pred CCccEEEECccCCcCCcC-------EeeEcCCCEEEEEEeCCCCCCeEEEE
Confidence 456688999999988766 8999999999999886 67777653
No 385
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.16 E-value=0.045 Score=50.92 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|||||||++.|+-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999999853
No 386
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=93.16 E-value=0.01 Score=42.90 Aligned_cols=43 Identities=26% Similarity=0.687 Sum_probs=36.4
Q ss_pred CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
+..+.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 4 ~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 46 (68)
T 1wi7_A 4 GSSGRRCQVAFSYLPQNDD-------ELELKVGDIIEVVGEVEEGWWEGV 46 (68)
T ss_dssp CCCCCCEEESSCBCCSSTT-------BCCBCTTCEECCCEEEETTEEEEC
T ss_pred CCCCCEEEECccCCcCCCC-------CccCcCCCEEEEEEcCCCCeEEEE
Confidence 4567789999999998776 899999999999998778888764
No 387
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.16 E-value=0.056 Score=46.52 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.5
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..++|+||+|+|||+++..+++.
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999864
No 388
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.13 E-value=0.046 Score=50.49 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4678999999999999999999853
No 389
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.11 E-value=0.049 Score=50.32 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.6
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....++.|+||+|+|||||++.|+-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 35678999999999999999999853
No 390
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.08 E-value=0.055 Score=47.33 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=20.2
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..+.|+||+|+|||||++.|+..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36889999999999999998854
No 391
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.07 E-value=0.31 Score=43.40 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=20.6
Q ss_pred CCcEEEeCCCCCChHHHHHHHHh
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
..-|-|+|..||||||++..|.+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999987
No 392
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.06 E-value=0.046 Score=48.63 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=20.4
Q ss_pred CCcEEEeCCCCCChHHHHHHHHh
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
..++.|+||+|+|||||++.|+-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46789999999999999999874
No 393
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.05 E-value=0.017 Score=43.28 Aligned_cols=44 Identities=20% Similarity=0.481 Sum_probs=38.1
Q ss_pred cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
+.+...|++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 6 ~~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 49 (81)
T 2ysq_A 6 SGDSIVSAEAVWDHVTMANR-------ELAFKAGDVIKVLDASNKDWWWGQ 49 (81)
T ss_dssp CCCCCEEEEESSCCCCSSSS-------SCCCCTTCEEEEEECCSSSEEEEE
T ss_pred CCCCceEEEEeeeECCCCCC-------cCCCCCCCEEEEEEEcCcCEEEEE
Confidence 45778899999999988766 799999999999999888888774
No 394
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=93.05 E-value=0.013 Score=41.53 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=35.0
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
|..-+++|+++|.+..++ +|+|+.||++.++...+..||...
T Consensus 1 g~~~~~~al~~y~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~ 42 (62)
T 2fpe_A 1 GSEQTHRAIFRFVPRHED-------ELELEVDDPLLVELQAEDYWYEAY 42 (62)
T ss_dssp CCCCCEEECSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEE
T ss_pred CCCCEEEECccCCccCcC-------cCcCCCCCEEEEEEecCCCEEEEE
Confidence 344578899999998777 799999999999988888888764
No 395
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.04 E-value=0.049 Score=49.06 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 396
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.04 E-value=0.044 Score=51.52 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=22.2
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..+.+|.|+||+|||||||++.|+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999864
No 397
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.03 E-value=0.07 Score=51.04 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=23.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.++.++|.||+|+|||++++.|++..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999998653
No 398
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.02 E-value=0.047 Score=49.69 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.0
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.++.|+||+|+|||||.+.|+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68899999999999999999863
No 399
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=93.00 E-value=0.018 Score=42.53 Aligned_cols=43 Identities=26% Similarity=0.577 Sum_probs=36.6
Q ss_pred CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
.....+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 7 ~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 49 (76)
T 1ujy_A 7 GSHQLIVKARFNFKQTNED-------ELSVCKGDIIYVTRVEEGGWWEGT 49 (76)
T ss_dssp SCCCEEEECCSCBCCSSTT-------SCCBCSSCCEEESSCCSSSCEEEE
T ss_pred CCCCEEEEECccCCcCCCC-------cccCCCCCEEEEEEecCCCEEEEE
Confidence 3567889999999988766 899999999999998888888764
No 400
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.00 E-value=0.048 Score=49.44 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||.+.|+-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999854
No 401
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.95 E-value=0.05 Score=49.65 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999864
No 402
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.95 E-value=0.05 Score=49.90 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999854
No 403
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.95 E-value=0.044 Score=49.76 Aligned_cols=25 Identities=24% Similarity=0.599 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.++.++|+||+|+|||+++..+++.
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHH
Confidence 3567899999999999999999875
No 404
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.94 E-value=0.047 Score=49.57 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....+.|+||+|+|||||++.|+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999853
No 405
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.92 E-value=0.052 Score=50.24 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 406
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.92 E-value=0.05 Score=51.26 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.9
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.++.|+||+||||||++..|+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568899999999999999999853
No 407
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=92.92 E-value=0.013 Score=40.81 Aligned_cols=38 Identities=21% Similarity=0.752 Sum_probs=33.0
Q ss_pred eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
|++|+++|.+..++ +|+|+.||++.++.+.++.||...
T Consensus 3 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 40 (58)
T 1uti_A 3 WARALYDFEALEED-------ELGFRSGEVVEVLDSSNPSWWTGR 40 (58)
T ss_dssp EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEE
T ss_pred EEEECccCCCCCcC-------CCCCCCCCEEEEEEECCCCEEEEE
Confidence 78899999988766 899999999999999888888663
No 408
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.90 E-value=0.065 Score=50.00 Aligned_cols=26 Identities=19% Similarity=0.568 Sum_probs=23.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.++.++|+||+|+|||+|++.|+...
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45789999999999999999999764
No 409
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.90 E-value=0.053 Score=49.84 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5578999999999999999999854
No 410
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.88 E-value=0.055 Score=49.72 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.5
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....++.|+||+|+|||||++.|+-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999853
No 411
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=92.87 E-value=0.018 Score=41.54 Aligned_cols=44 Identities=30% Similarity=0.507 Sum_probs=36.8
Q ss_pred cCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 237 ~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
++....+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 3 s~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 46 (68)
T 2djq_A 3 SGSSGPRAKALCNYRGKNPG-------DLKFNKGDVILLRRQLDENWYQGE 46 (68)
T ss_dssp CCSSCCEEEECSCCCSCCTT-------CCCCCTTCEEEEEECCCSSEEEEE
T ss_pred CCCCceEEEECCCCCCCCcC-------CccCCCCCEEEEEEecCCCEEEEE
Confidence 34556789999999988766 899999999999998888888764
No 412
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.87 E-value=0.059 Score=49.73 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+-.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5578999999999999999999864
No 413
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.83 E-value=0.015 Score=42.64 Aligned_cols=44 Identities=30% Similarity=0.641 Sum_probs=37.0
Q ss_pred CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959 238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288 (366)
Q Consensus 238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 288 (366)
.+..++++|+++|.+..++ +|+|+.||++.++.+.+..||..+.
T Consensus 6 ~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~ 49 (72)
T 2dl8_A 6 SGEPIEAIAKFDYVGRTAR-------ELSFKKGASLLLYQRASDDWWEGRH 49 (72)
T ss_dssp SCSCEEEEESSCBCCSSSS-------BCCBCTTCEEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEECccCCcCCCC-------EeccCCCCEEEEEeecCCCEEEEEE
Confidence 4567899999999988766 7999999999999988788887643
No 414
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.83 E-value=0.07 Score=48.12 Aligned_cols=25 Identities=24% Similarity=0.741 Sum_probs=21.5
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++-++|+||+|+|||+|++.++...
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3449999999999999999998753
No 415
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.83 E-value=0.057 Score=49.28 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999863
No 416
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=92.81 E-value=0.012 Score=41.07 Aligned_cols=40 Identities=23% Similarity=0.507 Sum_probs=32.3
Q ss_pred eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCC-hhhHHHH
Q psy16959 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDD-PNWWQAY 287 (366)
Q Consensus 241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~ 287 (366)
|+..+|+++|.+..++ +|+|+.||++.++...+ ..||..+
T Consensus 1 G~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~W~~g~ 41 (58)
T 1zuu_A 1 GMENKVLYAYVQKDDD-------EITITPGDKISLVARDTGSGWTKIN 41 (58)
T ss_dssp --CCEECSCBCCCSTT-------BCCBCTTCCEEEEECCSSSSEEEEE
T ss_pred CCEEEEeeeECCcCCC-------cccCCCCCEEEEeEcCCCCCCEEEE
Confidence 5678999999988776 89999999999999876 6777653
No 417
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.81 E-value=0.059 Score=47.19 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.2
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
...+++|+||+|+|||+|+..|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999884
No 418
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.78 E-value=0.059 Score=49.83 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=21.6
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...+++|+||+|+|||+++..+++.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999988764
No 419
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.76 E-value=0.058 Score=45.04 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.9
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
-|+|+|++|+|||+|..+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999864
No 420
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.75 E-value=0.045 Score=48.98 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.+|.|.||+||||||+++.|+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4567899999999999999999876
No 421
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=92.73 E-value=0.019 Score=42.70 Aligned_cols=41 Identities=34% Similarity=0.659 Sum_probs=35.7
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHH
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 286 (366)
..+.+++|+++|.+..++ +|+|+.||++.++.+.+..||..
T Consensus 5 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g 45 (78)
T 2yuo_A 5 SSGRRAKALLDFERHDDD-------ELGFRKNDIITIISQKDEHCWVG 45 (78)
T ss_dssp CCCEEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEE
T ss_pred CCceEEEECccCCCCCCC-------CccCCCCCEEEEEEecCCCEEEE
Confidence 456789999999988776 89999999999999888888865
No 422
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.72 E-value=0.024 Score=48.97 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.6
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+.+.|+||||||||||+..|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999864
No 423
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.72 E-value=0.034 Score=48.70 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.4
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.-|+|+|++|||||+|..+|...
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 34889999999999999999865
No 424
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.71 E-value=0.06 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=22.1
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
+..++|+||+|+|||||++.++...
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3678999999999999999998764
No 425
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.71 E-value=0.057 Score=49.40 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.0
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999864
No 426
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.70 E-value=0.095 Score=50.29 Aligned_cols=27 Identities=37% Similarity=0.586 Sum_probs=23.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.+..++|+||+|+|||++++.|++..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999998653
No 427
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.70 E-value=0.056 Score=51.58 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=21.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.++.|+||+||||||++..|+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999853
No 428
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.70 E-value=0.057 Score=46.58 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=19.8
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
-|+|+|++|||||||+.+|+..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 429
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.69 E-value=0.055 Score=46.08 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=19.4
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|||||+|+.+|+..
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 430
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.69 E-value=0.064 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...+++|+||+|+|||+|+..+++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999999864
No 431
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=92.68 E-value=0.1 Score=53.20 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=31.7
Q ss_pred CeEEEEEEcCCchhcccCCCCCCCeEEEEcCEEcCCC
Q psy16959 9 DAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGK 45 (366)
Q Consensus 9 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~ 45 (366)
.|++|..|.++|||++ + |+.||+|++|||..+.+.
T Consensus 277 ~Gv~V~~V~~~spA~~-a-l~~GDvI~~idg~~V~~~ 311 (539)
T 4fln_A 277 EGVLVRRVEPTSDASK-V-LKEGDVIVSFDDLHVGCE 311 (539)
T ss_dssp BCEEEEEECTTSGGGG-T-CCTTCEEEEETTEECBSS
T ss_pred CceeeecccCCChHHh-C-ccCCCEEEEECCEEeCcC
Confidence 5899999999999986 5 999999999999999653
No 432
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=92.66 E-value=0.015 Score=40.38 Aligned_cols=38 Identities=37% Similarity=0.803 Sum_probs=33.0
Q ss_pred eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
|++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 3 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 40 (57)
T 1cka_A 3 YVRALFDFNGNDEE-------DLPFKKGDILRIRDKPEEQWWNAE 40 (57)
T ss_dssp EEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEE
T ss_pred EEEECCcCCCCCCC-------CCCCCCCCEEEEEEecCCCcEEEE
Confidence 67899999988766 799999999999999888888764
No 433
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.65 E-value=0.063 Score=50.76 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=22.7
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..+..+.|+||+|+|||||+..|+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 45678999999999999999999864
No 434
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.65 E-value=0.12 Score=49.72 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.4
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+..++|+||||||||||++.|...
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999875
No 435
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.63 E-value=0.069 Score=46.54 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
...+++|+||+|+|||+|+..|+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 436
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.63 E-value=0.061 Score=49.59 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.4
Q ss_pred CCCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 102 NEKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 102 ~~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
....++.|+||+|+|||||++.|+-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 35678999999999999999998854
No 437
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.61 E-value=0.023 Score=43.37 Aligned_cols=44 Identities=27% Similarity=0.692 Sum_probs=37.5
Q ss_pred CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959 238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288 (366)
Q Consensus 238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 288 (366)
...+.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+.
T Consensus 14 ~~~~~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~ 57 (88)
T 1x2q_A 14 NKVARKVRALYDFEAVEDN-------ELTFKHGEIIIVLDDSDANWWKGEN 57 (88)
T ss_dssp CCCCEEEEESSCCCCCSSS-------CCCCCSSCEEEEEECSCSSSEEEEE
T ss_pred CCCCeEEEEcccCCCCCcC-------ccCCCCCCEEEEEEeCCCCEEEEEE
Confidence 3567789999999988776 7999999999999998888987743
No 438
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=92.60 E-value=0.013 Score=40.97 Aligned_cols=40 Identities=28% Similarity=0.655 Sum_probs=33.8
Q ss_pred eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
|.+++|+++|.+..++ +|+|+.||++.++.+.+..||...
T Consensus 1 g~~~~al~d~~~~~~~-------eLs~~~Gd~i~v~~~~~~gW~~g~ 40 (59)
T 1yn8_A 1 GQRAVALYDFEPENDN-------ELRLAEGDIVFISYKHGQGWLVAE 40 (59)
T ss_dssp CEEEEECSCBCCCSTT-------BCCBCTTCEEEEEEEEETTEEEEE
T ss_pred CCEEEECccCCCCCCC-------CcCCCCCCEEEEEEcCCCCeEEEE
Confidence 4678999999988766 799999999999988777788664
No 439
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.55 E-value=0.053 Score=46.66 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=19.8
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
-++|+|++|||||||+.+|+..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 440
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.54 E-value=0.061 Score=50.05 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999864
No 441
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=92.53 E-value=0.017 Score=41.61 Aligned_cols=38 Identities=21% Similarity=0.648 Sum_probs=33.4
Q ss_pred eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
+++|+++|.+..++ +|+|+.||++.++.+.+..||...
T Consensus 3 ~~~Alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~gWw~g~ 40 (65)
T 2fei_A 3 QCKVLFEYIPQNED-------ELELKVGDIIDINEEVEEGWWSGT 40 (65)
T ss_dssp EEECSSCCCCCSTT-------BCCCCTTCEEECCCCSSSSEEEEE
T ss_pred EEEECccCCcCCcC-------ccCCCCCCEEEEEEecCCCEEEEE
Confidence 67899999988776 899999999999999888888774
No 442
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.53 E-value=0.021 Score=41.67 Aligned_cols=42 Identities=29% Similarity=0.431 Sum_probs=35.3
Q ss_pred CCeeeeeeecCCCC-CCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 239 GGGMHVIAHFDYDP-EDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 239 G~glYirAl~~~~p-~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
..+..++|+++|.+ ..++ +|+|+.||++.++.+.+..||..+
T Consensus 5 ~~~~~~~Alydy~~~~~~~-------eLsf~~Gd~i~v~~~~~~~W~~g~ 47 (71)
T 2gqi_A 5 SSGRRVRAILPYTKVPDTD-------EISFLKGDMFIVHNELEDGWMWVT 47 (71)
T ss_dssp CSCCCEEESSCCCCCTTSS-------CCCCCTTCBCCCCEECSSSCEEEE
T ss_pred CCCCEEEECcccCCCCCCC-------CCCCCCCCEEEEEEecCCCEEEEE
Confidence 44567899999999 6655 799999999999999888888764
No 443
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.53 E-value=0.07 Score=49.31 Aligned_cols=22 Identities=27% Similarity=0.703 Sum_probs=20.4
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+++|+||+|+|||+++..|++.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 7899999999999999999875
No 444
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.52 E-value=0.073 Score=47.67 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=22.7
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+..|.|+|++||||||+++.|++..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999999754
No 445
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=92.52 E-value=0.018 Score=40.27 Aligned_cols=41 Identities=17% Similarity=0.489 Sum_probs=34.2
Q ss_pred eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhc-CChhhHHHHH
Q psy16959 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ-DDPNWWQAYR 288 (366)
Q Consensus 241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~ 288 (366)
+.+++|+++|.+..++ +|+|+.||++.++.+ .+..||..+.
T Consensus 2 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~Ww~g~~ 43 (60)
T 2v1q_A 2 MERGIVQYDFMAESQD-------ELTIKSGDKVYILDDKKSKDWWMCQL 43 (60)
T ss_dssp CCEEEECSCBCCCSTT-------BCCBCTTCEEEEEESSSCSSEEEEEE
T ss_pred CcEEEEeeeECCCCCC-------CccCCCCCEEEEEeCCCCCCCEEEEE
Confidence 5688999999988776 899999999999998 4778886643
No 446
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.48 E-value=0.062 Score=47.11 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.1
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
..+|.|+|++||||||+++.|++..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578899999999999999999863
No 447
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.46 E-value=0.034 Score=45.96 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=22.3
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
...+|+|.||+|+|||++++.+.+..
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhC
Confidence 35689999999999999999987653
No 448
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.45 E-value=0.15 Score=42.49 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=20.8
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
..-|+|+|++|||||+|..+|...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999864
No 449
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=92.45 E-value=0.025 Score=42.20 Aligned_cols=44 Identities=16% Similarity=0.436 Sum_probs=37.2
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHc
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE 289 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 289 (366)
....|++|+++|.+..++ +|+|+.||++.++.+.+..||.....
T Consensus 5 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~gWw~g~~~ 48 (80)
T 1ue9_A 5 SSGEIAQVTSAYVASGSE-------QLSLAPGQLILILKKNTSGWWQGELQ 48 (80)
T ss_dssp SCCEEEEECSCCCCCSTT-------BCCCCTTCEEEEEEECSSSEEEEEEC
T ss_pred CCCeEEEECcccCCCCCC-------CCCCCCCCEEEEEEecCCCcEEEEEC
Confidence 456789999999988766 89999999999999988888877443
No 450
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.43 E-value=0.064 Score=49.13 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...++.|+||+|+|||||++.|+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999864
No 451
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=92.42 E-value=0.015 Score=42.94 Aligned_cols=42 Identities=31% Similarity=0.800 Sum_probs=36.0
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
+...+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 15 ~~~~~~~Alydy~a~~~~-------eLsf~~Gd~i~Vl~~~~~gWw~g~ 56 (72)
T 2l0a_A 15 HEARKVRAIYDFEAAEDN-------ELTFKAGEIITVLDDSDPNWWKGE 56 (72)
T ss_dssp CCCEEEEESSCBCCSSTT-------BCCBCTTCEEEEEEEEETTEEEEE
T ss_pred CCCeEEEECCccCCCCCC-------ccCCCCCCEEEEEEecCCCEEEEE
Confidence 456788999999988776 899999999999998888888764
No 452
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.41 E-value=0.06 Score=45.81 Aligned_cols=22 Identities=9% Similarity=0.289 Sum_probs=19.7
Q ss_pred CcEEEeCCCCCChHHHHHHHHh
Q psy16959 105 RPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
.+.+|+||+|+|||+|+..|.-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999999864
No 453
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=92.39 E-value=0.018 Score=40.43 Aligned_cols=41 Identities=32% Similarity=0.730 Sum_probs=34.7
Q ss_pred CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
.+.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 4 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 44 (60)
T 2xmf_A 4 GSPQCKALYAYDAQDTD-------ELSFNANDIIDIIKEDPSGWWTGR 44 (60)
T ss_dssp CSCEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEE
T ss_pred CCcEEEECccCCcCCcC-------CcCCCCCCEEEEEEecCCCEEEEE
Confidence 34678999999988766 899999999999999888888764
No 454
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.35 E-value=0.056 Score=49.34 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=22.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.++.++|+||+|+|||+++..+++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34579999999999999999998763
No 455
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=92.34 E-value=0.018 Score=41.01 Aligned_cols=40 Identities=28% Similarity=0.714 Sum_probs=34.1
Q ss_pred eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHHc
Q psy16959 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE 289 (366)
Q Consensus 243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 289 (366)
+++|+++|.+..++ +|+|+.||++.++.+.+..||.....
T Consensus 3 ~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~ 42 (65)
T 2oaw_A 3 LVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKVEVK 42 (65)
T ss_dssp EEEECSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEEEE
T ss_pred EEEEcccCCccCCC-------CCCCCCCCEEEEEEcCCCCEEEEEEc
Confidence 67899999988766 89999999999999988888876433
No 456
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=92.32 E-value=0.018 Score=40.17 Aligned_cols=39 Identities=23% Similarity=0.618 Sum_probs=33.4
Q ss_pred eeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 242 lYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
-+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 3 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 41 (58)
T 1zx6_A 3 EYVEALYQFDPQQDG-------DLGLKPGDKVQLLEKLSPEWYKGS 41 (58)
T ss_dssp CEEEECSCBCCCSTT-------BCCBCTTCEEEEEEECSSSEEEEE
T ss_pred eEEEECceECCCCCC-------CccCCCCCEEEEEEecCCCEEEEE
Confidence 378899999988766 899999999999999888888664
No 457
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=92.29 E-value=0.022 Score=43.20 Aligned_cols=42 Identities=24% Similarity=0.511 Sum_probs=34.9
Q ss_pred CCeeeeeeecCC-CCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 239 GGGMHVIAHFDY-DPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 239 G~glYirAl~~~-~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
...++++|+++| .+..++ +|+|+.||++.++.+.+..||..+
T Consensus 16 ~~~~~~~Alydy~~a~~~~-------eLsf~~GDiI~V~~~~~~gWw~G~ 58 (83)
T 2ke9_A 16 RGSLKVRALKDFWNLHDPT-------ALNVRAGDVITVLEQHPDGRWKGH 58 (83)
T ss_dssp -CCEEEEESSCBCCCSCTT-------BCCBCTTCEEEESCSSCSSCEEEE
T ss_pred CCCeEEEEccccCCCCCCC-------cccccCCCEEEEEEecCCCeEEEE
Confidence 456789999999 666655 899999999999999888888775
No 458
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A
Probab=92.29 E-value=0.017 Score=42.86 Aligned_cols=42 Identities=19% Similarity=0.502 Sum_probs=36.1
Q ss_pred CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288 (366)
Q Consensus 240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 288 (366)
.+.+++|+++|.+..++ +|+|+.||++.++.+.+.+||..+.
T Consensus 19 ~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~ 60 (77)
T 1awj_A 19 EETLVIALYDYQTNDPQ-------ELALRCDEEYYLLDSSEIHWWRVQD 60 (77)
T ss_dssp SSSCCCCCCCBCCCCTT-------SCCBCSSSCCSCCCTTSSSBCCCCC
T ss_pred CceEEEECccCCCCCcC-------CcCCCCCCEEEEEEecCCCCEEEEE
Confidence 45688999999988776 8999999999999998889997743
No 459
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.27 E-value=0.1 Score=44.08 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.4
Q ss_pred cEEEeCCCCCChHHHHHHHHhcc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
-|+|+|++|||||+|..+|....
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 48899999999999999998653
No 460
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.25 E-value=0.085 Score=46.28 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.7
Q ss_pred CcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
.+|+|+|++||||||++..|++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998864
No 461
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.21 E-value=0.091 Score=48.19 Aligned_cols=25 Identities=24% Similarity=0.741 Sum_probs=21.5
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++-++|+||+|+|||+|++.|+...
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc
Confidence 3449999999999999999998753
No 462
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.21 E-value=0.076 Score=44.89 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.9
Q ss_pred cEEEeCCCCCChHHHHHHHHhc
Q psy16959 106 PIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 106 ~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
-|+|+|++|||||||..+|+..
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999864
No 463
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=92.20 E-value=0.019 Score=39.97 Aligned_cols=40 Identities=43% Similarity=0.985 Sum_probs=33.8
Q ss_pred eeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288 (366)
Q Consensus 242 lYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 288 (366)
.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+.
T Consensus 3 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~ 42 (58)
T 2vwf_A 3 TYVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGAC 42 (58)
T ss_dssp CEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred eEEEECceECCCCcC-------CcCCCCCCEEEEEEcCCCCEEEEEE
Confidence 378899999988776 8999999999999988888887643
No 464
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.20 E-value=0.11 Score=48.65 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.7
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
....++|+||+|+|||+++..+++..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998764
No 465
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Probab=92.20 E-value=0.026 Score=41.38 Aligned_cols=42 Identities=31% Similarity=0.724 Sum_probs=35.6
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
....+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 5 ~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 46 (73)
T 2dbm_A 5 SSGPCCRALYDFEPENEG-------ELGFKEGDIITLTNQIDENWYEGM 46 (73)
T ss_dssp CCCCEEEESSCBCCCSTT-------CCCBCTTCEEECCBCSSSSEEEEE
T ss_pred CCCCEEEEccccCCCCCC-------CccCCCCCEEEEEEecCCCEEEEE
Confidence 345689999999988776 899999999999999888888763
No 466
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=92.20 E-value=0.017 Score=40.31 Aligned_cols=39 Identities=28% Similarity=0.584 Sum_probs=33.1
Q ss_pred eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288 (366)
Q Consensus 243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 288 (366)
+++|+++|.+..++ +|+|+.||++.++.+.+..||..+.
T Consensus 2 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~ 40 (58)
T 1jo8_A 2 WATAEYDYDAAEDN-------ELTFVENDKIINIEFVDDDWWLGEL 40 (58)
T ss_dssp CEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred EEEECceECCCCCC-------CcccCCCCEEEEEEecCCCcEEEEE
Confidence 46899999888766 8999999999999998888887643
No 467
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.18 E-value=0.096 Score=45.11 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=19.3
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|||||+|+.+++..
T Consensus 9 v~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999854
No 468
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.16 E-value=0.082 Score=46.83 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=21.5
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
...++.|+||+|+|||+|+..|+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999999986
No 469
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=92.15 E-value=0.024 Score=40.96 Aligned_cols=42 Identities=14% Similarity=0.580 Sum_probs=35.5
Q ss_pred CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
...+.+++|+++|.+..++ +|+|+.||++.++.+. ..||..+
T Consensus 4 ~~~~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~-~~Ww~~~ 45 (68)
T 1wxt_A 4 GSSGLKMQVLYEFEARNPR-------ELTVVQGEKLEVLDHS-KRWWLVK 45 (68)
T ss_dssp CCCCEEEEESSCBCCCSSS-------BCCBCTTCEEEEEECS-SSEEEEE
T ss_pred CCCCeEEEECceECCCCcC-------cCCCCCCCEEEEEEcC-CCEEEEE
Confidence 4567899999999998776 8999999999999985 7788664
No 470
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.14 E-value=0.095 Score=47.54 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.4
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.+++|+||+|+|||++++.+.+.
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3578999999999999999999875
No 471
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=92.12 E-value=0.019 Score=43.03 Aligned_cols=41 Identities=24% Similarity=0.410 Sum_probs=34.9
Q ss_pred CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChh-hHHHH
Q psy16959 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPN-WWQAY 287 (366)
Q Consensus 240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~ 287 (366)
...+++|+++|.+..++ +|+|+.||++.++.+.+.. ||..+
T Consensus 9 ~~~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~gWw~g~ 50 (80)
T 2i0n_A 9 FAKYARALKDYNVSDTS-------LLPFKRNDIITITFKDQENKWFMGQ 50 (80)
T ss_dssp CCCEEEESSCBCCCSSS-------SCCBCSSEEEEEEEESSSSSEEEEE
T ss_pred CCeEEEECCCCCcCCCC-------CcCCCCCCEEEEEEecCCCCEEEEE
Confidence 45789999999988776 8999999999999998777 87653
No 472
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.10 E-value=0.071 Score=50.39 Aligned_cols=25 Identities=32% Similarity=0.634 Sum_probs=22.5
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++.++|+||+|+|||+|++.+++..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4679999999999999999999764
No 473
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.01 E-value=0.024 Score=43.29 Aligned_cols=41 Identities=24% Similarity=0.499 Sum_probs=36.1
Q ss_pred CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
.+++++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 16 ~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~gWw~g~ 56 (88)
T 2cub_A 16 LNMPAYVKFNYMAERED-------ELSLIKGTKVIVMEKCSDGWWRGS 56 (88)
T ss_dssp CCEEEEESSCCCCCSTT-------BCCCCTTEEEEEEEECTTSEEEEE
T ss_pred CCCEEEEccccCCCCCC-------CcCCCCCCEEEEEEccCCCeEEEE
Confidence 57889999999988776 899999999999999888888764
No 474
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=92.00 E-value=0.02 Score=39.80 Aligned_cols=39 Identities=38% Similarity=1.004 Sum_probs=33.4
Q ss_pred eeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 242 lYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
.+++|+++|.+..++ +|+|+.||++.++...+..||...
T Consensus 3 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 41 (58)
T 1sem_A 3 KFVQALFDFNPQESG-------ELAFKRGDVITLINKDDPNWWEGQ 41 (58)
T ss_dssp CEEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEE
T ss_pred eEEEECcCCCCCCCC-------CcCCCCCCEEEEEEecCCCEEEEE
Confidence 367899999988766 899999999999999888888764
No 475
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.99 E-value=0.084 Score=43.61 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|||||+|..+|...
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999753
No 476
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=91.99 E-value=0.029 Score=40.71 Aligned_cols=43 Identities=28% Similarity=0.689 Sum_probs=35.6
Q ss_pred CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcC--ChhhHHHH
Q psy16959 238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQAY 287 (366)
Q Consensus 238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~ 287 (366)
+...-+++|+++|.+..++ +|+|+.||++.++.+. +..||..+
T Consensus 4 ~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~W~~g~ 48 (70)
T 2da9_A 4 GSSGDYCKVIFPYEAQNDD-------ELTIKEGDIVTLINKDCIDVGWWEGE 48 (70)
T ss_dssp CCSSEEEEECSCCCCSSTT-------BCCCCTTEEEEEEECCCSSTTEEEEE
T ss_pred CCCCcEEEECcCCCCCCcC-------EeeEcCCCEEEEEECCCCCCCeEEEE
Confidence 4456789999999988776 8999999999999885 77788664
No 477
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.97 E-value=0.081 Score=51.17 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=21.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
.+.++.|+||+||||||++..|+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4567899999999999999999853
No 478
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=91.96 E-value=0.032 Score=40.80 Aligned_cols=42 Identities=19% Similarity=0.404 Sum_probs=34.3
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhc-CChhhHHHH
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ-DDPNWWQAY 287 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~ 287 (366)
....+++|+++|.+..++ +|+|+.||++.++.+ .+..||..+
T Consensus 8 ~~~~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~~Ww~g~ 50 (72)
T 1ugv_A 8 TPFRKAKALYACKAEHDS-------ELSFTAGTVFDNVHPSQEPGWLEGT 50 (72)
T ss_dssp CSCCCEEESSCBCCCSSS-------BCCBCTTCEEBSCCBCSSTTEEEEE
T ss_pred CCccEEEEccccCCcCCC-------EeCCcCCCEEEEEEecCCCCeEEEE
Confidence 445689999999988776 899999999999885 667777653
No 479
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.95 E-value=0.078 Score=48.99 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.6
Q ss_pred CcEEEeCCCCCChHHHHHHHHhc
Q psy16959 105 RPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 105 r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+-++|+||+|+|||+|++.|+..
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 33999999999999999999875
No 480
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=91.95 E-value=0.024 Score=41.12 Aligned_cols=39 Identities=26% Similarity=0.670 Sum_probs=33.2
Q ss_pred eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
..+++|+++|.+..++ +|+|+.||++.++.+. .+||..+
T Consensus 4 ~~~~~Alydy~a~~~~-------ELsf~~Gd~i~vl~~~-~~Ww~~~ 42 (67)
T 2b86_A 4 EVIVIAKWDYTAQQDQ-------ELDIKKNERLWLLDDS-KTWWRVR 42 (67)
T ss_dssp CEEEEESSCBCCSSTT-------SCCBCTTCEEEEEECS-SSSCEEE
T ss_pred CeEEEEeeeECCCCCC-------ccccCCCCEEEEEecC-CCeEEEE
Confidence 4688999999988776 8999999999999984 6788774
No 481
>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Probab=91.94 E-value=0.012 Score=44.65 Aligned_cols=48 Identities=17% Similarity=0.365 Sum_probs=38.5
Q ss_pred cccCCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcC--ChhhHHHHHcc
Q psy16959 235 HKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQAYREG 290 (366)
Q Consensus 235 ~~~~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~ 290 (366)
+.+||.-++ .|+++|.+..+. +|+|++||.+.+++.. +++||+++...
T Consensus 12 ~~~g~~e~~-valydF~Ar~~~-------ELS~~kGd~vevle~~~~~peW~lvr~~~ 61 (82)
T 1u3o_A 12 TLSGGCELT-VVLQDFSAAHSS-------ELSIQVGQTVELLERPSERPGWCLVRTTE 61 (82)
T ss_dssp --CCCCEEE-ECSSCBCCCSTT-------CCCBCTTCEEEESSCTTSSTTEEEEEESS
T ss_pred cccCCceEE-EEEeeecCCCCC-------eeeEcCCCEEEEEecCCCCCCEEEEEECC
Confidence 468888775 589999888776 8999999999999986 59999997543
No 482
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.93 E-value=0.089 Score=43.24 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=19.3
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|||||+|..+|...
T Consensus 8 i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 483
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.91 E-value=0.065 Score=49.56 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=18.9
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
+.|+||+|+|||||++.|+..
T Consensus 5 v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 679999999999999999853
No 484
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1
Probab=91.91 E-value=0.022 Score=43.26 Aligned_cols=41 Identities=29% Similarity=0.745 Sum_probs=34.9
Q ss_pred CCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHH
Q psy16959 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286 (366)
Q Consensus 239 G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 286 (366)
....+++|+++|.+..++ +|+|..||++.++.+.++.||..
T Consensus 15 ~~~~~~~Alydy~a~~~~-------eLsf~~Gd~i~Vl~~~~~gWw~g 55 (83)
T 1neg_A 15 TGKELVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKV 55 (83)
T ss_dssp --CCEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEE
T ss_pred CCceEEEEccccCCCCCC-------ccccCCCCEEEEEEecCCCEEEE
Confidence 567889999999998776 89999999999999988888876
No 485
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.90 E-value=0.088 Score=43.66 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=19.4
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|||||+|+.+|...
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCccHHHHHHHHhcC
Confidence 789999999999999999864
No 486
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.90 E-value=0.087 Score=49.56 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.1
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhcc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDS 128 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~ 128 (366)
++.++|+||+|+|||+|++.+++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4569999999999999999998764
No 487
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=91.86 E-value=0.025 Score=40.70 Aligned_cols=38 Identities=26% Similarity=0.539 Sum_probs=32.7
Q ss_pred eeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 243 YirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 3 ~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 40 (65)
T 2nwm_A 3 AARLKFDFQAQSPK-------ELTLQKGDIVYIHKEVDKNWLEGE 40 (65)
T ss_dssp EEEECSCBCCCSTT-------BCCBCTTCEEEEEECCTTTCEEEE
T ss_pred EEEEeeeECCCCcC-------ccCCcCCCEEEEEEecCCCEEEEE
Confidence 57899999988766 899999999999998888888664
No 488
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Probab=91.85 E-value=0.019 Score=41.85 Aligned_cols=41 Identities=24% Similarity=0.579 Sum_probs=35.4
Q ss_pred eeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHHH
Q psy16959 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288 (366)
Q Consensus 241 glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 288 (366)
+.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+.
T Consensus 6 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~ 46 (71)
T 1hsq_A 6 KCAVKALFDYKAQRED-------ELTFIKSAIIQNVEKQEGGWWRGDY 46 (71)
T ss_dssp SSCCCCSSCCCCSSSS-------SCCCCTTCCCBSCCCBTTTEECCBC
T ss_pred CeEEEECCCCCcCCCC-------ccCCCCCCEEEEEEecCCCEEEEEE
Confidence 4578999999988776 8999999999999998888988754
No 489
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.84 E-value=0.025 Score=43.12 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=33.3
Q ss_pred eeeeeeecCCCCC--CCCCcchhhhccCccchhHHHHHhcCChhhHHH
Q psy16959 241 GMHVIAHFDYDPE--DDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286 (366)
Q Consensus 241 glYirAl~~~~p~--~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 286 (366)
..|++|+++|.|. .++ +|+|+.||++.++.+.+..||..
T Consensus 16 ~~~~~alydy~~~a~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g 56 (88)
T 2dbk_A 16 PVFAKAIQKRVPCAYDKT-------ALALEVGDIVKVTRMNINGQWEG 56 (88)
T ss_dssp CEEEEECSCBCCCTTCSS-------BCCBCTTCEEEEEEECTTSCEEE
T ss_pred CEEEEEcccccCCCCCCC-------cccCCCCCEEEEEEecCCCEEEE
Confidence 4688999999966 555 79999999999999988889866
No 490
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.82 E-value=0.09 Score=50.81 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
...++.|+||+|+|||||.+.|+-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHC
Confidence 567899999999999999999985
No 491
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1
Probab=91.80 E-value=0.023 Score=41.46 Aligned_cols=43 Identities=28% Similarity=0.690 Sum_probs=34.7
Q ss_pred CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
|...-+++|+++|.+..++ +|+|..||++.++...+..||..+
T Consensus 2 ~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 44 (73)
T 3thk_A 2 GTGKELVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKVE 44 (73)
T ss_dssp ---CCEEEECSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEE
T ss_pred CCCCEEEEECcCCCcCCCC-------ccCCCCCCEEEEEECCCCCeEEEE
Confidence 3455688999999888766 799999999999999888888774
No 492
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.78 E-value=0.12 Score=49.56 Aligned_cols=27 Identities=26% Similarity=0.559 Sum_probs=23.4
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSD 129 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~ 129 (366)
.++.++|+||+|+|||+|+..+++..+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999997643
No 493
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.75 E-value=0.03 Score=42.36 Aligned_cols=41 Identities=27% Similarity=0.469 Sum_probs=35.1
Q ss_pred CeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhc--CChhhHHHH
Q psy16959 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ--DDPNWWQAY 287 (366)
Q Consensus 240 ~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~ 287 (366)
...|++|+++|.+..++ +|+|+.||++.++.. .+..||...
T Consensus 7 ~~~~~~al~dy~~~~~~-------eLsf~~Gd~i~v~~~~~~~~~Ww~g~ 49 (85)
T 2dlp_A 7 GSGYVIALRSYITDNCS-------LLSFHRGDLIKLLPVATLEPGWQFGS 49 (85)
T ss_dssp CCCEEEESSCBCCSSSS-------BCCBCTTCEEEECCCSCCCTTEEEEE
T ss_pred CCEEEEECCCCCccCcC-------CccCcCCCEEEEEEccCCCCCeEEEE
Confidence 45789999999988776 899999999999987 888888663
No 494
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.75 E-value=0.098 Score=42.75 Aligned_cols=21 Identities=19% Similarity=0.580 Sum_probs=19.3
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy16959 107 IVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 107 ivL~GpsgsGK~~L~~~L~~~ 127 (366)
|+|+|++|||||+|..+|...
T Consensus 6 i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 495
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.75 E-value=0.029 Score=40.46 Aligned_cols=43 Identities=26% Similarity=0.627 Sum_probs=36.5
Q ss_pred CCCeeeeeeecCCCCCCCCCcchhhhccCccchhHHHHHhcCChhhHHHH
Q psy16959 238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287 (366)
Q Consensus 238 ~G~glYirAl~~~~p~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 287 (366)
+..+.+++|+++|.+..++ +|+|+.||++.++.+.+..||..+
T Consensus 4 ~~~~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~ 46 (68)
T 1x2p_A 4 GSSGEEFVAIADYAATDET-------QLSFLRGEKILILRQTTADWWWGE 46 (68)
T ss_dssp CCSCCEEEESSCCCCSSTT-------BCCCCTTCEEEEEECCSSSEEEEE
T ss_pred CCCCCEEEECceECCCCcC-------CcCCCCCCEEEEEEcCCCCEEEEE
Confidence 3456788999999988766 799999999999999888888774
No 496
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.74 E-value=0.079 Score=51.24 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
...++.|+||+|+|||||.+.|+-
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 457899999999999999999985
No 497
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.73 E-value=0.089 Score=49.40 Aligned_cols=39 Identities=21% Similarity=0.357 Sum_probs=26.7
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCC
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPM 142 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~p 142 (366)
+-.|+|+|.+|||||||+.+|....-......+.||+..
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~ 48 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMR 48 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeE
Confidence 345889999999999999999865322222334455543
No 498
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.72 E-value=0.095 Score=50.71 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.8
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHh
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLME 126 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~ 126 (366)
...++.|+||+|+|||||.+.|+-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 557899999999999999999985
No 499
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.72 E-value=0.084 Score=48.68 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=21.6
Q ss_pred CCcEEEeCCCCCChHHHHHHHHhc
Q psy16959 104 KRPIVLIGPPNIGRHELRQRLMED 127 (366)
Q Consensus 104 ~r~ivL~GpsgsGK~~L~~~L~~~ 127 (366)
...+.|+||+|+|||||++.|+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 678999999999999999999853
No 500
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=91.71 E-value=0.084 Score=51.66 Aligned_cols=44 Identities=14% Similarity=0.247 Sum_probs=32.1
Q ss_pred CCCcEEEeCCCCCChHHHHHHHHhccCCcceeeeccCCCCCCCC
Q psy16959 103 EKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGE 146 (366)
Q Consensus 103 ~~r~ivL~GpsgsGK~~L~~~L~~~~~~~~~~~~~tTr~pr~~E 146 (366)
....+.|+|++|+|||||.+.|...........+.||..|..+.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~ 62 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAK 62 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeee
Confidence 44568999999999999999998742112344567788876553
Done!