RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16959
(366 letters)
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 125 bits (316), Expect = 7e-35
Identities = 33/88 (37%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 101 SNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQ 159
S+ ++ +VL+G +GR ++ L+ + DRFA IPHT+RP K E +G++Y+F++ Q
Sbjct: 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQ 61
Query: 160 FELDILARKFIEHGEYEKSYYGLRTKLD 187
DI +++E+G +E + YG TKL+
Sbjct: 62 MMQDISNNEYLEYGSHEDAMYG--TKLE 87
Score = 71.0 bits (175), Expect = 9e-15
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFE 344
GT L+ IR + G I +L++ PQ+LK+LR+++ PFV+F+A P
Sbjct: 83 GTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTIT 129
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 124 bits (314), Expect = 2e-34
Identities = 28/103 (27%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 90 TYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVD 148
+ ++ +VLIG +GR ++ L+ ++ ++F +P+T+RP + E D
Sbjct: 5 HHHSSGRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEED 64
Query: 149 GQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQA 191
G++YHFI+ + +I A +F+E G Y+ + +G TK + +
Sbjct: 65 GKEYHFISTEEMTRNISANEFLEFGSYQGNMFG--TKFETVHQ 105
Score = 74.9 bits (185), Expect = 4e-16
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD 355
GT + + + KI +L++ PQ+LKI+R+++L PF++F+AP + +
Sbjct: 97 GTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQTEALQQLQK 154
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 125 bits (316), Expect = 1e-33
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 9/120 (7%)
Query: 70 KTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM-EDS 128
+ + + + D +L+YE V+ + RPI+++GP + L+ E
Sbjct: 73 LKAKDWGSSSGSQGREDSVLSYETVTQMEV--HYARPIIILGP---TKDRANDDLLSEFP 127
Query: 129 DRFAAAIPHTSRPMKDGEVDGQDYHFIT-RAQFELDILARKFIEHGEYEKSYYGLRTKLD 187
D+F + +PHT+RP ++ E+DG+DYHF++ R + E DI A KFIE G+Y YG T +
Sbjct: 128 DKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYG--TSVQ 185
Score = 93.7 bits (233), Expect = 5e-22
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHT 295
G ++ A FDYD D + +SF+ GD+LHVI D WWQA R + T
Sbjct: 1 GFYIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARRVHSDSET 53
Score = 75.9 bits (187), Expect = 1e-15
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD 355
GTS+ ++R V GK C+L++ +++ L+++ L P IF+ P E + + R +
Sbjct: 181 GTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITE 238
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 122 bits (308), Expect = 1e-32
Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 55 VGLTGQEMTMG--REAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGP 112
V ++ +G + R + + + +L+YE V N RP++++GP
Sbjct: 51 VLGDNEDEQIGIVPSKRRWERKMRARDRSVKSEENVLSYEAVQRLSI--NYTRPVIILGP 108
Query: 113 PNIGRHELRQRLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFIT-RAQFELDILARKFI 170
+ + L+ E D+F + +PHT+RP ++ EVDG+DYHF++ R Q E DI FI
Sbjct: 109 ---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFI 165
Query: 171 EHGEYEKSYYGLRTKLD 187
E G+Y + YG T +
Sbjct: 166 EAGQYNDNLYG--TSVA 180
Score = 89.0 bits (221), Expect = 2e-20
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHT 295
++V A FDYDP D +P + G+ F+ GDILHV + D WWQA R ++
Sbjct: 6 LYVRALFDYDPNRDDGLPSR--GLPFKHGDILHVTNASDDEWWQARRVLGDNED 57
Score = 79.4 bits (196), Expect = 6e-17
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRGD 355
GTS+ ++R V GK C+L++ ++K L+ + L P +F+ P + + + R +
Sbjct: 176 GTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTE 233
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 104 bits (259), Expect = 1e-24
Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 25/183 (13%)
Query: 18 KGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMG----------RE 67
G + GD + I+ V + +G RE
Sbjct: 441 DCGFLSQALSFRFGDVLHVIDA-----GDEEWWQARRVHSDSETDDIGFIPSKRRVERRE 495
Query: 68 AWKTSHA-FRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM- 125
+ + + + D +L+YE V+ + RPI+++GP + L+
Sbjct: 496 WSRLKAKDWGSSSGSQGREDSVLSYETVTQM--EVHYARPIIILGPT---KDRANDDLLS 550
Query: 126 EDSDRFAAAIPHTSRPMKDGEVDGQDYHFIT-RAQFELDILARKFIEHGEYEKSYYGLRT 184
E D+F + +PHT+RP ++ E+DG+DYHF++ R + E DI A KFIE G+Y YG T
Sbjct: 551 EFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYG--T 608
Query: 185 KLD 187
+
Sbjct: 609 SVQ 611
Score = 85.7 bits (211), Expect = 2e-18
Identities = 58/310 (18%), Positives = 98/310 (31%), Gaps = 21/310 (6%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
G +++ V ++++GG A + G L GD+IL +N + + L
Sbjct: 176 GNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAAL---KNT 232
Query: 61 EMTMGREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHEL 120
+ + K S+A+ + D+ + + S P R
Sbjct: 233 YDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYS 292
Query: 121 RQRLMEDSDRFAAAIPHTSRPMKDGE------VDGQDYHFITRAQFELDILARK--FIEH 172
+ P + V G+D I + A +
Sbjct: 293 PVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRK 352
Query: 173 GEYEKSYYGLRTK-------LDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVF 225
G+ S G+ + L+ T+ E + E +L N
Sbjct: 353 GDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSS 412
Query: 226 RSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
T + G ++ A FDYD D + +SF+ GD+LHVI D WWQ
Sbjct: 413 LGSGTASL-RSNPKRGFYIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQ 469
Query: 286 AYREGEEDHT 295
A R + T
Sbjct: 470 ARRVHSDSET 479
Score = 81.1 bits (199), Expect = 8e-17
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 290 GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQK 349
G+ + L GTS+ ++R V GK C+L++ +++ L+++ L P IF+ P E + +
Sbjct: 599 GQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEI 658
Query: 350 RIRRGD 355
R +
Sbjct: 659 NKRITE 664
Score = 59.5 bits (143), Expect = 7e-10
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 6 NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
+ ++ + +++ GG A + G L D IL +N +++R + + L
Sbjct: 86 GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEAL 134
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 99 bits (248), Expect = 1e-23
Identities = 45/355 (12%), Positives = 97/355 (27%), Gaps = 45/355 (12%)
Query: 1 GATIR-NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
G + + V V++ A + GL EGD+IL +N ++ L+ L
Sbjct: 22 GLRLAGGNDVGIFVAGVLEDSPAAKEGL-EEGDQILRVNNVDFTNIIREEAVLFLLDLPK 80
Query: 60 QEMTMGREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHE 119
E + + ++ + ++ E + + R
Sbjct: 81 GEEV------TILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVV 134
Query: 120 LRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSY 179
+ A I + ++ G + ++ + K +
Sbjct: 135 DTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRA---EQLASVQYTLPKTAGGDRADFWR 191
Query: 180 YGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDG 239
+ + T+ + + E GF + G
Sbjct: 192 FRGLRSSKRNLRKSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIF------------G 239
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGT 299
V E D+Y K G + +
Sbjct: 240 PIADVAREKLAREEPDIYQIAKSEPR----------------------DAGTDQRSSGII 277
Query: 300 SLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG 354
L I+ +++ K +L++ P ++ L + P V+F+ P + +K R+R
Sbjct: 278 RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLC 332
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 113
Score = 82.5 bits (204), Expect = 1e-19
Identities = 38/59 (64%), Positives = 50/59 (84%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
GAT+RNE D+VI+ R+VKGG A+++GLLHEGDE+LEINGIEIRGK ++ V D+L + G
Sbjct: 40 GATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHG 98
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 84.9 bits (209), Expect = 1e-18
Identities = 13/60 (21%), Positives = 23/60 (38%)
Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEED 293
K+ V + Y + +P + +SF+ D LHV + + +WW E
Sbjct: 31 KAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGC 90
Score = 61.0 bits (147), Expect = 1e-10
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 287 YREGEEDHTLAGTSLDAIRTVVNAGKICVLNL-HPQSLKILRSSDLKPFVIFVAPPPFEL 345
+ ++ I + ++ VL+ L + L P V++V ++
Sbjct: 205 RSNTRSSLAEVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKV 264
Query: 346 LKQKRIRRG 354
L++ RG
Sbjct: 265 LQRLIKSRG 273
Score = 60.2 bits (145), Expect = 3e-10
Identities = 21/126 (16%), Positives = 37/126 (29%), Gaps = 13/126 (10%)
Query: 66 REAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRH---ELRQ 122
A H+ E + Y RP+VL+GP G +++
Sbjct: 104 MRLQHEQRAKEFKLHSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQK 163
Query: 123 RLM-EDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYG 181
L RF I T R D + + + IE S
Sbjct: 164 ALFDFLKHRFEGRISIT-RVTADISL--------AKRSVLNNPSKHAIIERSNTRSSLAE 214
Query: 182 LRTKLD 187
++++++
Sbjct: 215 VQSEIE 220
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 81.4 bits (202), Expect = 2e-18
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 105 RPIVLIGPPNIGRHELRQRLMEDS-DRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163
RPIV+ GP G+ L ++L + D F ++ T+R + GEV+G+DY+F++ +F+
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61
Query: 164 ILARKFIEHGEYEKSYYG-LRTKLDK-LQAGIPTLNFDI 200
I +FIE ++ +YYG + + ++G + DI
Sbjct: 62 IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCI-LDI 99
Score = 40.5 bits (96), Expect = 3e-04
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQ-SLKILRSSDLKPFVIFVAPPPFELLKQKRIR-RG 354
G+++ +++ V +GK C+L++ Q + +L +F+APP E LK KR+ RG
Sbjct: 79 GSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLK-KRLEGRG 136
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 79.8 bits (198), Expect = 8e-18
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 105 RPIVLIGPPNIGRHELRQRLME-DSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163
RP+VL GP G+ L ++L + S F ++ HT+R + GE DG+DY+F+TR + D
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64
Query: 164 ILARKFIEHGEYEKSYYG--LRTKLDKLQAGIPTLNFDI 200
I A FIEH E+ + YG + D+
Sbjct: 65 IAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICV-LDV 102
Score = 43.3 bits (103), Expect = 3e-05
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIR-RG 354
GTS +A+R V +ICVL++ Q ++ ++ +DL P IFV PP ++L+Q R+R R
Sbjct: 82 GTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQ-RLRLRN 138
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 79.5 bits (197), Expect = 1e-17
Identities = 27/99 (27%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 105 RPIVLIGPPNIGRHELRQRLMEDS-DRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163
P+V+ GP +G+ L ++++ + RF +I T+R ++ E +G DY+F+ + FE
Sbjct: 13 PPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK 72
Query: 164 ILARKFIEHGEYEKSYYG-LRTKL-DKLQAGIPTLNFDI 200
+ +F+E +Y ++YG L+++ + G L F++
Sbjct: 73 LKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICL-FEM 110
Score = 39.1 bits (92), Expect = 8e-04
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFV--IFVAPPPFELLKQKRIR-RG 354
GT V GKIC+ ++ +K L+ S IFV PP ++L R++ R
Sbjct: 90 GTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILL-GRLKNRN 148
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 78.8 bits (195), Expect = 2e-17
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 105 RPIVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164
R +VL GP +G+ + + L E ++ T+R + GEVDG DYHFI +F+ I
Sbjct: 21 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI 80
Query: 165 LARKFIEHGEYEKSYYGLRTKL----DKLQAGIPTLNFDI 200
+ +E E + T G+P L ++
Sbjct: 81 DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVL-IEV 119
Score = 37.9 bits (89), Expect = 0.002
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG 354
GT +R G ++ + + ++ + + +F+APP ++ L+ + I RG
Sbjct: 99 GTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRG 155
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 78.4 bits (194), Expect = 4e-17
Identities = 29/102 (28%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 102 NEKRPIVLIGPPNIGRHELRQRLMED-SDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQF 160
N P+V+ GP +G+ L ++L+ + + F ++ T+R ++ E +G DY+FI + F
Sbjct: 21 NNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIF 80
Query: 161 ELDILARKFIEHGEYEKSYYG-LRTKLDK-LQAGIPTLNFDI 200
E + F+E+ Y ++YG L+++ DK + L F++
Sbjct: 81 EDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICL-FEM 121
Score = 37.9 bits (89), Expect = 0.002
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFV--IFVAPPPFELLKQKRIR-RG 354
GT KIC+ ++ +K L+ S IF+ PP ++L R+ R
Sbjct: 101 GTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLL-SRLLTRN 159
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 74.7 bits (184), Expect = 4e-17
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 1 GATIRN--EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT 58
GATI+ + A+IV R+++GG ADR+GL+H GDE+ E+NGI + K + IL
Sbjct: 18 GATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQ 77
Query: 59 G 59
G
Sbjct: 78 G 78
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 77.5 bits (192), Expect = 6e-17
Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 101 SNEK-RPIVLIGPPNIGRHELRQRLMEDSD-RFAAAIPHTSRPMKDGEVDGQDYHFITRA 158
NEK IVL GP +G+ +R+R+ ED + +I T+R M++GEVDG DY F TR
Sbjct: 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRD 61
Query: 159 QFELDILARKFIEHGEYEKSYYG--LRTKLDKLQAGIPTLNFDI 200
FE I +FIE+ EY +YYG ++ D + G +I
Sbjct: 62 AFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVF-LEI 104
Score = 37.9 bits (89), Expect = 0.003
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG 354
GT + ++ ++ G L + + K +R IF+APP E L+++ + RG
Sbjct: 84 GTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRG 140
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 77.1 bits (191), Expect = 9e-17
Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 105 RPIVLIGPPNIGRHELRQRLMEDSD-RFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELD 163
IVL GP +G+ +R+ + +D + F +I T+R ++GE DG DY+F +R FE
Sbjct: 9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQA 68
Query: 164 ILARKFIEHGEYEKSYYG--LRTKLDKLQAGIPTLNFDI 200
I K +E+ EY +YYG L +KL AG+ +I
Sbjct: 69 IKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIF-LEI 106
Score = 37.1 bits (87), Expect = 0.004
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG 354
GT L+ + + AG L + Q +R + + IF+ PP LK + I RG
Sbjct: 86 GTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRG 142
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 73.6 bits (181), Expect = 1e-16
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 1 GATIR-NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
G ++ NE + V R++ GG+ R G LH GDEILEING + S+ + + G
Sbjct: 27 GICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKG 86
Query: 60 Q 60
Sbjct: 87 M 87
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 75.2 bits (186), Expect = 4e-16
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 107 IVLIGPPNIGRHELRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDILA 166
++ P G+ L + L++ +I HT+RP + G+ +G DY FI +F+ +
Sbjct: 10 FIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKE 69
Query: 167 RKFIEHGEYEKSYYG-LRTKLDK-LQAGIPTLNFDI 200
F+EH + +YG + + + L+AG L +I
Sbjct: 70 GAFLEHATIYERHYGTEKDWVLRQLKAGRDVL-LEI 104
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 71.2 bits (175), Expect = 7e-16
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 1 GATIR-NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
G T++ NE + IV R++ GG+ R G LH GDEI EINGI + +++ + +L + G
Sbjct: 16 GITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG 75
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 76.9 bits (188), Expect = 1e-15
Identities = 45/375 (12%), Positives = 110/375 (29%), Gaps = 85/375 (22%)
Query: 1 GATIR-NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
G + + V V++ A + GL EG D ++ +
Sbjct: 14 GLRLAGGNDVGIFVAGVLEDSPAAKEGL-EEG--------------------DQILRVNN 52
Query: 60 QEMTMGREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHE 119
+ T + EE L+ + + ++ +
Sbjct: 53 VDFTN------------------------IIREEAVLFLLDLPKGEEVTILAQKKKDVYR 88
Query: 120 LRQRLMEDSDRFAAAIPHTSRPMKDGEVDGQ--DYHFITRAQFELDI---LARKFIEHGE 174
R + D F + + + + + LA + ++ +
Sbjct: 89 -RIVESDVGDSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHK 147
Query: 175 YEKSYYGLRTKLDKLQAG-IPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQT 233
+++ G IP E + + P+ F R ++
Sbjct: 148 -------------EVERGIIPN-----KNRAEQLASVQYTLPKTAGGDRADFWRFRGLRS 189
Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDIL-----HVI----SQDDPNWW 284
S ++ ++ + Y F + + V ++++P+ +
Sbjct: 190 SKRNLRKSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADVAREKLAREEPDIY 249
Query: 285 QAYRE-----GEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVA 339
Q + G + + L I+ +++ K +L++ P ++ L + P V+F+
Sbjct: 250 QIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLN 309
Query: 340 PPPFELLKQKRIRRG 354
P + +K R+R
Sbjct: 310 PDSKQGVKTMRMRLC 324
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 70.6 bits (173), Expect = 1e-15
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
G T R EG +++ R++ GG+ + GLLH GD I E+NG + G + ++L +G
Sbjct: 21 GVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASG 78
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 71.5 bits (176), Expect = 1e-14
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 107 IVLIGPPNIGRHELRQRLME-DSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDIL 165
+VL P G+ + +L+E + ++ T+R + GE +G+DY+F+ R +F
Sbjct: 30 LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89
Query: 166 ARKFIEHGEYEKSYYG-LRTKLDK-LQAGIPTLNFDI 200
+ IEH E ++YG R L+ + G+ TL I
Sbjct: 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTL-LVI 125
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 70.6 bits (174), Expect = 2e-14
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 107 IVLIGPPNIGRHELRQRLME--DSDRFAAAIPHTSRPMKDGEVDGQDYHFITRAQFELDI 164
++ P G+ L Q L++ ++ HT+R + GEV G+ Y F+ +F+ I
Sbjct: 19 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 78
Query: 165 LARKFIEHGEYEKSYYG-LRTKL-DKLQAGIPTLNFDI 200
F+EH E +YYG R + L G+ DI
Sbjct: 79 SRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVF-LDI 115
Score = 28.7 bits (65), Expect = 2.9
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG 354
GTS +AI V+ G L++ Q + +R IF+ PP L ++ RG
Sbjct: 95 GTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRG 151
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 67.6 bits (165), Expect = 4e-14
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 6 NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
+ + + R+V GGLA TGLL DE+LE+NGIE+ GKS+ V D+++ +
Sbjct: 62 EKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSR 115
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 63.6 bits (155), Expect = 7e-13
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 1 GATIR----NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
G ++ + + R+ + DR+G LH GD IL I+G + S+ +L
Sbjct: 30 GISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLL 87
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 63.1 bits (154), Expect = 7e-13
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 1 GATIR---NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL 57
G TI D +I+ + KGGLA+RTG +H GD IL IN ++GK + +L
Sbjct: 19 GITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQM- 77
Query: 58 TGQEMTM 64
G+ +T+
Sbjct: 78 AGETVTL 84
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A
{Homo sapiens}
Length = 95
Score = 62.8 bits (153), Expect = 7e-13
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 1 GATIRNEGD-AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL-T 58
G TI + G + R+ GG+ D + GD I ING I G + V L L
Sbjct: 19 GLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKK 78
Query: 59 GQEMTM 64
+ TM
Sbjct: 79 EELFTM 84
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 62.3 bits (152), Expect = 1e-12
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
G ++ + +++G + L GD I + NG + G + + G G+
Sbjct: 23 GLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGK 82
Query: 61 -EMTMGRE 67
M + R
Sbjct: 83 VSMEVTRP 90
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 61.3 bits (149), Expect = 4e-12
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 1 GATIRNEGDA-----VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILV 55
G + G ++ ++ GG A+R+G L GD + ING + G + +
Sbjct: 24 GVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVR 83
Query: 56 GLTGQ 60
Q
Sbjct: 84 ETKSQ 88
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 60.5 bits (147), Expect = 8e-12
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
G ++ + +++G + L GD I + NG + G + + G G+
Sbjct: 17 GLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGK 76
Query: 61 -EMTMGRE 67
M + R
Sbjct: 77 VSMEVTRP 84
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 63.7 bits (154), Expect = 1e-11
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 298 GTSLDAIRTVVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRIRRG 354
LD +R + K +L++ P +++ L P V+F P LK R
Sbjct: 185 IIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLA 241
Score = 59.8 bits (144), Expect = 3e-10
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 16/67 (23%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPN---------WWQAYRE 289
G ++ HF+ +P G+ F +GD+ HV+ P W A R
Sbjct: 2 GDSFYIRTHFELEP-------SPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRM 54
Query: 290 GEEDHTL 296
G +
Sbjct: 55 GRDLREQ 61
Score = 46.0 bits (108), Expect = 8e-06
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 66 REAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLM 125
R A KT+ R YE V L + KRP+V++GP Q+L
Sbjct: 109 RGAKKTTQRSREDLSALTRQGRYPPYERVVLREA--SFKRPVVILGPV---ADIAMQKLT 163
Query: 126 -EDSDRF--AAAIPHTSRPMKDGEVD 148
E D+F A + T P K ++D
Sbjct: 164 AEMPDQFEIAETVSRTDSPSKIIKLD 189
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 56.5 bits (137), Expect = 8e-11
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
S G +A DY D+ +L SF +G+ + ++ Q +WW R G
Sbjct: 3 SGSSGEEFVAIADYAATDE-----TQL--SFLRGEKILILRQTTADWWWGERAGCC 51
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 8e-11
Identities = 46/302 (15%), Positives = 87/302 (28%), Gaps = 84/302 (27%)
Query: 77 HTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHELRQRLMEDSDRFAAAIP 136
H H H D + E Y + I+ +++ D +
Sbjct: 1 HHHHHHMDFE----TGEHQYQY------KDIL---------SVFEDAFVDNFD--CKDVQ 39
Query: 137 HTSRP-MKDGEVDG--QDYHFITRAQFELDILARK-------FIEHGEYEKSYYGLRTKL 186
+ + E+D ++ L K F+E +Y L + +
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL-RINYKFLMSPI 98
Query: 187 DKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSD-----RTKQTSHKSDGG- 240
K + P++ +Y ND ++ F+K+NV R R +
Sbjct: 99 -KTEQRQPSMMTRMY---IEQRDRLYNDNQV-FAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 241 ---GM-----HVIAH---FDYDPEDDMYIPCK----ELGMSFQKGDILHVI----SQDDP 281
G+ +A Y + M K L +L ++ Q DP
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKM--DFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 282 NWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNL-----HPQSLKILR----SSDLK 332
NW DH+ I+ +++ + + L + L +L +
Sbjct: 212 NWTS-----RSDHS------SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 333 PF 334
F
Sbjct: 261 AF 262
Score = 41.0 bits (95), Expect = 6e-04
Identities = 53/384 (13%), Positives = 102/384 (26%), Gaps = 108/384 (28%)
Query: 30 EGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTMGR---EAWKTSHAFRHTEHTHFDVD 86
E D I+ + L L+ QE + + E + ++ F +
Sbjct: 50 EIDHIIMSKDAVSG---TLRLFWTL--LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 87 EILTYEEVSLYYPRSNEKRPIVLIGPPNIGRHE----LRQRLMEDSDRFAAAIPHTSRPM 142
+ R + N+ R + LRQ L+E RP
Sbjct: 105 PSMMTRMYIEQ--RDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL------------RPA 150
Query: 143 KDGEVDG--------------QDYHFITRAQFE---------------LDILARKFI--- 170
K+ +DG Y + F+ L++L +
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 171 -EHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLT-DEINDPELGFSKFNVFRSD 228
++ ++ +QA + L L + + + ++ FN
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKA-WNAFN-LSC- 266
Query: 229 RTKQTSHKS---DGGGMHVIAHFDYDPEDDMYIP-------CKELGMSFQ-------KGD 271
+ T+ D H D P K L Q +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 272 ILHV--IS---QDDPNWWQAYREGEEDHTLAGTSLDAIRTVVNAGKICVLNLHPQSLKIL 326
+ I+ +D W ++ + D + T++ + + L P + +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKH---------VNCDKLTTII---ESSLNVLEPAEYRKM 374
Query: 327 RSSDLKPFVIFVAPP----PFELL 346
+F PP P LL
Sbjct: 375 ----FDRLSVF--PPSAHIPTILL 392
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 57.3 bits (139), Expect = 1e-10
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
G +++G V+ G ADR G LH GDE++ ++GI + GK+ V D++
Sbjct: 30 DEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLM 79
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 55.4 bits (134), Expect = 2e-10
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
S S G + IA FDY +EL SF+KG L + + +WW+
Sbjct: 2 SSGSSGEPIEAIAKFDYVGRTA-----REL--SFKKGASLLLYQRASDDWWE 46
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 55.3 bits (134), Expect = 2e-10
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
S G A + ++P EL F++GDI+++ D NWW+ +G
Sbjct: 3 SGSSGKVFRALYTFEPRTP-----DEL--YFEEGDIIYITDMSDTNWWKGTSKG 49
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 55.3 bits (134), Expect = 2e-10
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
G +V A FD++ D+ ++L F+KGDIL + + + WW A
Sbjct: 1 GSAEYVRALFDFNGNDE-----EDL--PFKKGDILRIRDKPEEQWWNA 41
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 54.9 bits (133), Expect = 2e-10
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
G G+ V A +DYD + EL +F++GD + V +D WW+
Sbjct: 1 GPGIQVKALYDYDAQTG-----DEL--TFKEGDTIIVHQKDPAGWWE 40
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 54.8 bits (133), Expect = 2e-10
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+V A FD++ D+ ++L F+KGDIL + + + WW A
Sbjct: 1 AEYVRALFDFNGNDE-----EDL--PFKKGDILRIRDKPEEQWWNA 39
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 56.3 bits (136), Expect = 3e-10
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
+ +++ GG A++TG L EG ++LE NGI + K+ V I+
Sbjct: 51 AYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSII 94
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 56.7 bits (137), Expect = 3e-10
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 1 GATIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
G + G + +V KG LAD G L GDE+LE NG ++G + V +I+
Sbjct: 56 GGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNII 110
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 55.0 bits (133), Expect = 3e-10
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
+S S V +D ++D EL +F +G+++ V ++D WW + EG+
Sbjct: 2 SSGSSGNKVRRVKTIYDCQADND-----DEL--TFIEGEVIIVTGEEDQEWWIGHIEGQP 54
Query: 293 DHT 295
+
Sbjct: 55 ERK 57
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 55.1 bits (133), Expect = 3e-10
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
S G + +A FDY ++L SF+ GD L V+ WW A
Sbjct: 3 SGSSGQYFVALFDYQARTA-----EDL--SFRAGDKLQVLDTSHEGWWLA 45
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 57.1 bits (138), Expect = 4e-10
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
G +++ + + V V A GL GD++L+ING G S +L G+
Sbjct: 19 GLRLKSIDNGIFVQLVQANSPASLVGL-RFGDQVLQINGENCAGWSSDKAHKVLKQAFGE 77
Query: 61 EMTM 64
++TM
Sbjct: 78 KITM 81
Score = 36.7 bits (85), Expect = 0.004
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 15 RVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+VK A R GLL I EING + G + DIL +G +T+
Sbjct: 113 SIVKDSSAARNGLL-TEHNICEINGQNVIGLKDSQIADIL-STSGTVVTI 160
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 54.3 bits (131), Expect = 5e-10
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
+S S G + +A F Y +EL SF++GD+L + + +WW+
Sbjct: 2 SSGSSGEGVVEAVACFAYTGRTA-----QEL--SFRRGDVLRLHERASSDWWR 47
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 54.7 bits (132), Expect = 5e-10
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 226 RSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
R + G V+A +DY + +E+ + +KGDIL +++ + +WW+
Sbjct: 2 RGSHHHHHHGSDETGKELVLALYDYQEKSP-----REV--TMKKGDILTLLNSTNKDWWK 54
Query: 286 AYREGEE 292
+
Sbjct: 55 VEVNDRQ 61
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 53.7 bits (130), Expect = 5e-10
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
G IA FDY +EL SF+KG L + + +WW+
Sbjct: 2 PLGSPEFAIAKFDYVGRSA-----REL--SFKKGASLLLYHRASEDWWE 43
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 54.6 bits (132), Expect = 7e-10
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + + + RV+ GG+ADR G L GD++L +NG+ + G+
Sbjct: 26 KEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ 67
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 54.3 bits (131), Expect = 7e-10
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
+S S + A +D+ + +EL +F+ GD++ V+ + +WW + EE
Sbjct: 2 SSGSSGDSIVSAEAVWDHVTMAN-----REL--AFKAGDVIKVLDASNKDWWWGQIDDEE 54
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 53.4 bits (129), Expect = 8e-10
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
S G A FD+ + KEL QKGDI+++ Q D NW++
Sbjct: 3 SGSSGRPARAKFDFKAQTL-----KEL--PLQKGDIVYIYKQIDQNWYE 44
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 55.3 bits (133), Expect = 8e-10
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT-G 59
G + G + + ++ G A G+L GD ++ + + G ++ +L +T G
Sbjct: 41 GLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIG 100
Query: 60 QEMTM 64
+ +
Sbjct: 101 TVLQI 105
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 53.3 bits (129), Expect = 8e-10
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 7/46 (15%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
G +V A FD+DP++D EL F++GD +HV+ DPNWW+
Sbjct: 1 GPTYVQALFDFDPQED-----GEL--GFRRGDFIHVMDNSDPNWWK 39
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 54.8 bits (132), Expect = 9e-10
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 6 NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
+ V+V V +GG A+R G + +GDEI+ ING + ++ L
Sbjct: 40 SPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAAL 88
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 55.2 bits (133), Expect = 9e-10
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 6 NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
E + V RV GLA + G + +G+E+L ING ++G + H IL
Sbjct: 39 LENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAIL 87
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 53.9 bits (130), Expect = 9e-10
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
S G A D++ DD EL F+K DI+ +ISQ D + W G
Sbjct: 3 SGSSGRRAKALLDFERHDD-----DEL--GFRKNDIITIISQKDEHCWVGELNGLR 51
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 53.6 bits (129), Expect = 1e-09
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
G V+A +DY + +E+ + +KGDIL +++ + +WW+ +
Sbjct: 1 GKELVLALYDYQEKSP-----REV--TMKKGDILTLLNSTNKDWWKVEVNDRQ 46
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 53.5 bits (129), Expect = 1e-09
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
S + VIA +DY D +EL + ++ + ++ + +WW+
Sbjct: 5 SSGEDNRRPLWEPEETVVIALYDYQTNDP-----QEL--ALRRNEEYCLLDSSEIHWWRV 57
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 53.8 bits (130), Expect = 1e-09
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
G+ + +G +V G AD G L GDE++ ++G + GKS
Sbjct: 23 NEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKS 64
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 53.0 bits (128), Expect = 1e-09
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
S G A +D++PE++ EL F++GDI+ + +Q D NW++
Sbjct: 3 SGSSGPCCRALYDFEPENE-----GEL--GFKEGDIITLTNQIDENWYE 44
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 53.6 bits (129), Expect = 1e-09
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
S + ++ V A +D++ +D EL +F+ G+I+ V+ D NWW+
Sbjct: 3 SGSSGSEIQLNNKVARKVRALYDFEAVED-----NEL--TFKHGEIIIVLDDSDANWWK 54
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 53.1 bits (128), Expect = 1e-09
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 232 QTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
H A FD+ EL +F+ GD++ ++S+ + +W EG
Sbjct: 9 HHHHMDRMAAPRAEALFDFTGNSK-----LEL--NFKAGDVIFLLSRINKDWL----EGT 57
>3e17_A Tight junction protein ZO-2; domain swapping, alternative
promoter usage, alternative splicing, cell junction,
cell membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 53.5 bits (129), Expect = 2e-09
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
G + V + + GLA + G LHEGD IL+ING S+ ++
Sbjct: 20 GSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLI 66
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 53.1 bits (128), Expect = 2e-09
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
+S S + V A F++ ++ EL S KGDI++V ++ WW+
Sbjct: 2 SSGSSGSHQLIVKARFNFKQTNE-----DEL--SVCKGDIIYVTRVEEGGWWE 47
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing
isoform B; GOPC PDZ domain, structural protein; NMR
{Homo sapiens}
Length = 103
Score = 53.9 bits (130), Expect = 2e-09
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 1 GATIR---NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
G +I G +++ + G ADR G LH GD IL +NG+ +R
Sbjct: 24 GISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 72
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 52.7 bits (127), Expect = 2e-09
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
G V+A +DY + +E+ + +KGDIL +++ + +WW+
Sbjct: 3 TGKELVLALYDYQEKSP-----REV--TMKKGDILTLLNSTNKDWWKV 43
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS,
nitric oxide synthase, oxidoreductase; NMR {Rattus
norvegicus} SCOP: b.36.1.1
Length = 127
Score = 54.5 bits (131), Expect = 2e-09
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
R VI+ +++GG A+++GL+ GD IL +N + S ++L
Sbjct: 29 RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVL 78
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 52.7 bits (127), Expect = 2e-09
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVIS-QDDPNWWQA 286
S ++ G M IA +D+ D EL SF++GDIL V++ + D NW++A
Sbjct: 2 SRRASVGSMEAIAKYDFKATAD-----DEL--SFKRGDILKVLNEECDQNWYKA 48
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 52.6 bits (127), Expect = 2e-09
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
S G IA F+++ + E+ SF+KG+ + ++ Q D NW++ G
Sbjct: 3 SGSSGGEAIAKFNFNGDTQ-----VEM--SFRKGERITLLRQVDENWYEGRIPG 49
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 52.6 bits (127), Expect = 2e-09
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
S V+A +DY P + +L +KGD ++ + + WW+A
Sbjct: 4 STSELKKVVALYDYMPMNA-----NDL--QLRKGDEYFILEESNLPWWRA 46
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 52.6 bits (127), Expect = 2e-09
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
S G A +Y ++ +L F KGD++ + Q D NW+ +GE
Sbjct: 3 SGSSGPRAKALCNYRGKNP-----GDL--KFNKGDVILLRRQLDENWY----QGE 46
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1qav_B
Length = 112
Score = 53.6 bits (129), Expect = 2e-09
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
R VI+ +++GG A+++GL+ GD IL +N + S
Sbjct: 22 RVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS 63
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 55.9 bits (135), Expect = 2e-09
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ-EMT 63
++ V + +GG+A R+ L GD I +NGI + + +L + + +
Sbjct: 29 IDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLE 88
Query: 64 MGREAWKTSHAFRHTEHTHFDV 85
+ E S +V
Sbjct: 89 VEYELPPVSIQGSSVMFRTVEV 110
Score = 50.5 bits (121), Expect = 1e-07
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 1 GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
GA V++ V GG ADR G + GD +L ++GI + G +
Sbjct: 126 GAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTT 172
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 55.7 bits (134), Expect = 2e-09
Identities = 11/60 (18%), Positives = 23/60 (38%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQ 60
G ++ + +++G + L GD I + NG + G + + G G+
Sbjct: 128 GLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGK 187
Score = 50.3 bits (120), Expect = 1e-07
Identities = 11/48 (22%), Positives = 16/48 (33%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIH 48
G + ++ V G L D I +ING I S+
Sbjct: 37 GGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMT 84
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 52.2 bits (126), Expect = 2e-09
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
+ V A +D++ +D EL +F+ G+++ V+ D NWWQ
Sbjct: 1 AGHMARRVRALYDFEAVED-----NEL--TFKHGELITVLDDSDANWWQ 42
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 51.8 bits (125), Expect = 2e-09
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
G A + ++P EL F++GDI+++ D NWW+ +G
Sbjct: 1 GQVKVFRALYTFEPRTP-----DEL--YFEEGDIIYITDMSDTNWWKGTSKG 45
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 52.3 bits (126), Expect = 2e-09
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+ G +A +DY+ + +L SF KG+ +++ + +WW+A
Sbjct: 10 RGGTGVTLFVALYDYEAITE-----DDL--SFHKGEKFQILNSSEGDWWEA 53
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 53.6 bits (129), Expect = 2e-09
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ G +++ + G ADR G LH GD IL +NG+ +R
Sbjct: 49 KEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 90
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 51.8 bits (125), Expect = 3e-09
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
S + V A F++ ++ EL SF KGD++HV ++ WW+
Sbjct: 2 SANSQLVVRAKFNFQQTNE-----DEL--SFSKGDVIHVTRVEEGGWWE 43
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 51.8 bits (125), Expect = 3e-09
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
S G+ IA +DY D E+ SF DI+ I D WW+ +G
Sbjct: 5 SSDLGITAIALYDYQAAGD-----DEI--SFDPDDIITNIEMIDDGWWRGVCKGRY 53
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 53.5 bits (129), Expect = 3e-09
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 1 GATIR--NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT 58
G I +G+ + V ++ GG AD +G L GD IL +NG+ +R + L
Sbjct: 29 GFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKR-A 87
Query: 59 GQEMTM 64
GQ +T+
Sbjct: 88 GQSVTI 93
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 52.8 bits (127), Expect = 3e-09
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 6 NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + +GG A G L G ILE+NG+ +RGK
Sbjct: 29 TRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKE 69
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex,
peptide binding protein; 1.54A {Rattus norvegicus}
SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 53.2 bits (128), Expect = 3e-09
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 1 GATIR--NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT 58
G I +G+ + + ++ GG AD +G L +GD+IL +NG+++R S L
Sbjct: 28 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-A 86
Query: 59 GQEMTM 64
GQ +T+
Sbjct: 87 GQTVTI 92
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 52.4 bits (126), Expect = 3e-09
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
S G A + + D EL + +KGDI+ + + + WW
Sbjct: 3 SGSSGRLCKALYSFQARQD-----DEL--NLEKGDIVIIHEKKEEGWWF 44
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 51.5 bits (124), Expect = 4e-09
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
S G F Y P++D EL + GDI+ V+ + + WW+
Sbjct: 3 SGSSGRRCQVAFSYLPQND-----DEL--ELKVGDIIEVVGEVEEGWWE 44
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 51.5 bits (124), Expect = 4e-09
Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
S G +A + + P+++ +L + GDI+ ++ + +WW+
Sbjct: 3 SGSSGNTYVALYKFVPQENE-----DL--EMRPGDIITLLEDSNEDWWK 44
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 51.6 bits (124), Expect = 4e-09
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 232 QTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+ VIA +DY D +EL + + + +++ + +WW+
Sbjct: 11 NRRSFQEPEETLVIALYDYQTNDP-----QEL--ALRCDEEYYLLDSSEIHWWRV 58
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 52.0 bits (125), Expect = 4e-09
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
G +A +DY+ +L SF KG+ ++ +WW+A
Sbjct: 4 SGVTLFVALYDYNATRW-----TDL--SFHKGEKFQILEFGPGDWWEA 44
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 51.5 bits (124), Expect = 4e-09
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
S G V A +DY + EL +F +G ++H +S++ WW+
Sbjct: 3 SGSSGRTVKALYDYKAKRS-----DEL--TFCRGALIHNVSKEPGGWWK 44
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 51.1 bits (123), Expect = 5e-09
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
G IA D+ + +L +F+KG+IL VI + WW A
Sbjct: 10 GEEYIAVGDFTAQQV-----GDL--TFKKGEILLVIEKKPDGWWIA 48
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 54.4 bits (131), Expect = 5e-09
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
+ R GD +++ + KG +A RTG L GD++L I+ I + S+ IL
Sbjct: 127 SPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQIL 180
Score = 54.4 bits (131), Expect = 5e-09
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 7 EGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
++ + A+R G+L GD ++ INGI + +L
Sbjct: 34 LSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLL 81
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 51.2 bits (123), Expect = 5e-09
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
V A +D++ +D EL +F+ G+I+ V+ DPNWW+
Sbjct: 13 HQHEARKVRAIYDFEAAED-----NEL--TFKAGEIITVLDDSDPNWWKGETHQGI 61
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 51.6 bits (124), Expect = 6e-09
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
+ G+ +A +DY D E+ SF DI+ I D WW+ +G
Sbjct: 10 DEYENDLGITAVALYDYQAAGD-----DEI--SFDPDDIITNIEMIDDGWWRGVCKGRY 61
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 50.7 bits (122), Expect = 6e-09
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
G V A F++ ++ EL SF KGD++HV ++ WW+
Sbjct: 4 GSVVRAKFNFQQTNE-----DEL--SFSKGDVIHVTRVEEGGWWE 41
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 51.1 bits (123), Expect = 6e-09
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
S G +A Y +EL QKG+ + V+ + W +
Sbjct: 3 SGSSGNMFVALHTYSAHRP-----EEL--DLQKGEGIRVLGKYQDGWLKG 45
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 51.1 bits (123), Expect = 6e-09
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
+ G V+ +DY + +EL + +KGDIL +++ + +WW+ G +
Sbjct: 2 DETGKELVLVLYDYQEKSP-----REL--TVKKGDILTLLNSTNKDWWKIEVNGRQ 50
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 50.8 bits (122), Expect = 6e-09
Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAG 298
V+A +DY + +E+ + +KGDIL +++ + +WW+ + +
Sbjct: 4 VLALYDYQEKSP-----REV--TMKKGDILTLLNSTNKDWWKVEVKITVNGKTYE 51
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 51.2 bits (123), Expect = 6e-09
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
V+A +DY EL + +GDI+ V +D+ +WW
Sbjct: 6 APTVVALYDYTANRS-----DEL--TIHRGDIIRVFFKDNEDWWYG 44
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 52.4 bits (126), Expect = 6e-09
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 1 GATIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
G I + + V +V GGLADR G L GD IL+I G ++G + V +L G
Sbjct: 29 GFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRN-CG 87
Query: 60 QEMTM 64
+ M
Sbjct: 88 NSVRM 92
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 51.5 bits (124), Expect = 6e-09
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
+ V + + LA R G + EGD +L+ING S+ ++
Sbjct: 20 ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLI 66
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 51.1 bits (123), Expect = 7e-09
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
G V+A +D+ + +L ++G ++ ++D +WW+A
Sbjct: 1 GSEIVVAMYDFQATEA-----HDL--RLERGQEYIILEKNDLHWWRA 40
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 50.7 bits (122), Expect = 7e-09
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
G A + YD +D EL SF DI+ +I +D WW
Sbjct: 4 GSPQCKALYAYDAQDT-----DEL--SFNANDIIDIIKEDPSGWWT 42
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 51.2 bits (123), Expect = 7e-09
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAG 298
G + +D+ D +EL SF+ GD+ HV +++ WW + G
Sbjct: 9 LGPKYVGLWDFKSRTD-----EEL--SFRAGDVFHVARKEEQWWWATLLDEAGGAVAQG 60
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 50.6 bits (122), Expect = 7e-09
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
S G F + PE +EL G+I+ V+ + + NW G
Sbjct: 3 SGSSGEAHRVLFGFVPETK-----EEL--QVMPGNIVFVLKKGNDNWATVMFNG 49
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 50.5 bits (121), Expect = 7e-09
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
S G V+A +DY + +E+ + +KGDIL +++ + +WW+
Sbjct: 16 DSGTGKELVLALYDYQEKSP-----REV--TMKKGDILTLLNSTNKDWWKV 59
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 51.9 bits (125), Expect = 8e-09
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+ + ++ GG AD +G L +GD+IL +NG+++R S L GQ +T+
Sbjct: 37 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTI 89
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 51.5 bits (124), Expect = 8e-09
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
+ V V +VKGG+AD G L +GD+IL +NG ++R + V +L
Sbjct: 25 KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALL 74
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 51.3 bits (123), Expect = 8e-09
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
I+ +++GG+A+R G+ G I+EING + + IL E+ M
Sbjct: 34 IICSLMRGGIAERGGV-RVGHRIIEINGQSVVATPHEKIVHILSN-AVGEIHM 84
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 50.2 bits (121), Expect = 8e-09
Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 7/42 (16%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
V A FD++P++ EL +F++GD++ +I++DDPNWW+
Sbjct: 5 VQALFDFNPQES-----GEL--AFKRGDVITLINKDDPNWWE 39
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 51.2 bits (123), Expect = 9e-09
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
+ V + + LA R G + EGD +L+ING S+ ++
Sbjct: 22 ASHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLI 68
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 51.5 bits (124), Expect = 9e-09
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
RN+ V++ V GG ADR G + GD +L ++GI + G +
Sbjct: 28 RNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTT 69
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 51.7 bits (124), Expect = 1e-08
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
G RNEG V + V+ GG + G L GD+++ IN + G S I+
Sbjct: 33 GGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSII 86
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 50.4 bits (121), Expect = 1e-08
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAG 298
V+A F Y + + +L +F+K + V S +D W+ + + G
Sbjct: 10 VVAQFPYKSDYE-----DDL--NFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEG 57
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 50.2 bits (121), Expect = 1e-08
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
M A FD+ + EL +F+ GD++ ++S+ + +W +
Sbjct: 4 HMRAEALFDFTGNSKL-----EL--NFKAGDVIFLLSRINKDWLE 41
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 51.3 bits (123), Expect = 1e-08
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+ T+ + + F Y P++D EL + GDI+ V+ + + WW+
Sbjct: 4 GGQQMGTNKRGERRRRRCQVAFSYLPQND-----DEL--ELKVGDIIEVVGEVEEGWWEG 56
Query: 287 YREG 290
G
Sbjct: 57 VLNG 60
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 50.3 bits (121), Expect = 1e-08
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
A +D++PE+D EL F++GD++ + +Q D NW++
Sbjct: 6 EFMPPLDQPSCKALYDFEPEND-----GEL--GFREGDLITLTNQIDENWYE 50
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 50.3 bits (121), Expect = 1e-08
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
G A +DY ++ EL GDIL VI + + WW R G+
Sbjct: 7 GAQEYRALYDYTAQNP-----DEL--DLSAGDILEVILEGEDGWWTVERNGQR 52
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 51.6 bits (124), Expect = 1e-08
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 6 NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+A+++ V + G A R G L GD+ILE+NG+++R S L T Q++ +
Sbjct: 40 TPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQ-TPQKVRL 97
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 49.8 bits (120), Expect = 1e-08
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
+ I FDY + D EL + G+I+ I ++D WW+
Sbjct: 2 VEAIVEFDYQAQHD-----DEL--TISVGEIITNIRKEDGGWWE 38
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L
homolog; PDZ domain, cellular signaling, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 51.8 bits (124), Expect = 1e-08
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
++ + A+R G+L GD ++ INGI + +L
Sbjct: 41 ETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLL 90
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 50.8 bits (122), Expect = 2e-08
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
R + V + +++GGLA + G L D +L ING +++ + + I+
Sbjct: 25 RTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQII 74
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 53.2 bits (128), Expect = 2e-08
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 6 NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
+ ++ + +++ GG A + G L D IL +N +++R + + L
Sbjct: 32 GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEAL 80
Score = 50.9 bits (122), Expect = 9e-08
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
+ V ++++GG A + G L GD+IL +N + + L
Sbjct: 132 IYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAAL 175
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 49.5 bits (119), Expect = 2e-08
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 11/51 (21%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
G V A F Y+ ++L FQ+GDI+ V+S+ + W EGE
Sbjct: 5 GSQVEALFSYEATQP-----EDL--EFQEGDIILVLSKVNEEWL----EGE 44
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 49.5 bits (119), Expect = 2e-08
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
G +V A + +DP+ D +L + GD + ++ + P W++
Sbjct: 1 GMEYVEALYQFDPQQD-----GDL--GLKPGDKVQLLEKLSPEWYK 39
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 50.4 bits (121), Expect = 2e-08
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+++ ++ KG AD+T L GD IL +NG ++ +
Sbjct: 32 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT 67
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 51.3 bits (123), Expect = 2e-08
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + +V++ A +T L GD+ILE++G++++ S
Sbjct: 52 IFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNAS 87
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; transferase, STRU genomics, structural
genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A
{Homo sapiens}
Length = 112
Score = 50.8 bits (122), Expect = 2e-08
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
R + V R+ + G A+R+G + GDEILEING +
Sbjct: 45 REYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMK 86
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 50.6 bits (121), Expect = 2e-08
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 244 VIAHFDYDPEDDMYIP-CKELGMSFQKGDILHVISQDDPNWW 284
+A FDYDP P E + F++G I+ V D + +
Sbjct: 20 FVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGF 61
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 51.3 bits (123), Expect = 2e-08
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + +V A G + GDEI +NG I+GK+
Sbjct: 41 AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKT 82
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 50.9 bits (122), Expect = 2e-08
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 6 NEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
+ +VI + +V G+A+R+G L GD ++ +N + S+ +IL
Sbjct: 40 DPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEIL 89
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 50.4 bits (121), Expect = 2e-08
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 6 NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
A+I+ V + G A + G L GD+ILE+NGI++R + ++L T Q + +
Sbjct: 27 TLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQ-TPQRVRL 84
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 49.2 bits (118), Expect = 2e-08
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 238 DGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
D IA F+++ + E+ SF+KG+ + ++ Q D NW++
Sbjct: 3 DPFTGEAIAKFNFNGDTQ-----VEM--SFRKGERITLLRQVDENWYE 43
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 51.0 bits (122), Expect = 3e-08
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + R+ KG ++++ + GDEIL++ G ++G +
Sbjct: 59 LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLT 94
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 50.4 bits (121), Expect = 3e-08
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 6 NEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
GD + V ++K G A R G L GD +L ING +G +
Sbjct: 34 VAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLT 75
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 49.3 bits (118), Expect = 3e-08
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
S G ++A +DYDP + E ++F GDI+ V + D + +
Sbjct: 3 SGSSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGF 50
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 49.2 bits (118), Expect = 3e-08
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
S G+ + ++++ + +EL + +G+ L V+ W G
Sbjct: 3 SGSSGLKMQVLYEFEARNP-----REL--TVVQGEKLEVLDHSKRWWLVKNEAGRS 51
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 49.7 bits (119), Expect = 3e-08
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
G TI+ + + V V G A+ + L DEI+ IN + + +
Sbjct: 20 GFTIKWDIPGIFVASVEAGSPAEFSQL-QVDDEIIAINNTKFSYNDSKEWEEAM 72
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 49.2 bits (118), Expect = 3e-08
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 232 QTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ-DDPNWWQA-YRE 289
S G IA +++ + ++L F KGD+L +++ DPNW++A +
Sbjct: 2 SAIQASWPSGTECIAKYNFHGTAE-----QDL--PFCKGDVLTIVAVTKDPNWYKAKNKV 54
Query: 290 GEE 292
G E
Sbjct: 55 GRE 57
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 49.3 bits (118), Expect = 3e-08
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
S G +IA DYDP D + ++ + GD++ V D +
Sbjct: 2 SSGSSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGF 50
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 48.8 bits (117), Expect = 4e-08
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
S G +V +D+ + EL S K ++L V+ W R G+
Sbjct: 3 SGSSGKYVKILYDFTARNA-----NEL--SVLKDEVLEVLEDGRQWWKLRSRSGQA 51
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 49.7 bits (119), Expect = 4e-08
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 7/42 (16%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
VIA +DY ++ EL SF KG +++V+++DDP+WWQ
Sbjct: 37 VIAMYDYAANNE-----DEL--SFSKGQLINVMNKDDPDWWQ 71
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 50.4 bits (121), Expect = 4e-08
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + G+A +T L GD I+ I G G +
Sbjct: 57 IAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMT 90
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 49.4 bits (118), Expect = 4e-08
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 7/56 (12%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
G + Y D E+ SF G + V+ + + WW E
Sbjct: 4 GSSGATSYMTCSAYQKVQD-----SEI--SFPAGVEVQVLEKQESGWWYVRFGELE 52
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 48.8 bits (117), Expect = 4e-08
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
G + Y + E+ F+KG + VI ++ WW G+E
Sbjct: 6 SGEEKYVTVQPYTSQSK-----DEI--GFEKGVTVEVIRKNLEGWWYIRYLGKE 52
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 48.8 bits (117), Expect = 4e-08
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
F+Y P+++ EL + GDI+ + + + WW
Sbjct: 3 LGSKKRQCKVLFEYIPQNE-----DEL--ELKVGDIIDINEEVEEGWWSGTLNN 49
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 48.3 bits (116), Expect = 4e-08
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
A +D++ ++ EL F+ G+++ V+ +P+WW +
Sbjct: 4 ARALYDFEALEE-----DEL--GFRSGEVVEVLDSSNPSWWTGRLHNKL 45
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 49.2 bits (118), Expect = 4e-08
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
+ + + +V G A G + GD I+ +N + G + V I
Sbjct: 21 DEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIF 70
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 105
Score = 49.6 bits (119), Expect = 4e-08
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 1 GATIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
G+T GDA I V R+ +GG A R G L GD +L ING+++
Sbjct: 29 GSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEAR 75
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 48.4 bits (116), Expect = 4e-08
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
V A FDY + + EL +F K I+ + + D WW+
Sbjct: 6 VKALFDYKAQRE-----DEL--TFTKSAIIQNVEKQDGGWWR 40
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 50.1 bits (120), Expect = 4e-08
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + +V A G + GDEI +NG I+GK+
Sbjct: 46 AQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKT 87
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 48.8 bits (117), Expect = 4e-08
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
S G A + Y P+++ EL ++GD + V+ Q D W+
Sbjct: 3 SGSSGTPYRAMYQYRPQNE-----DEL--ELREGDRVDVMQQCDDGWFV 44
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 49.4 bits (118), Expect = 4e-08
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
S + + M F+Y E + EL S KG + V+ + WW+
Sbjct: 3 SGSSGDPGERLYDLNMPAYVKFNYMAERE-----DEL--SLIKGTKVIVMEKCSDGWWRG 55
Query: 287 YREGEE 292
G+
Sbjct: 56 SYNGQV 61
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 49.8 bits (119), Expect = 4e-08
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
GG +A +DY+ ++L SF+KG+ +I+ + +WW+A
Sbjct: 23 LTGGVTIFVALYDYEARTT-----EDL--SFKKGERFQIINNTEGDWWEA 65
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 48.9 bits (117), Expect = 5e-08
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
A +DY+ + +L SF KG+ +++ + +WW+A
Sbjct: 8 FEALYDYEARTE-----DDL--SFHKGEKFQILNSSEGDWWEA 43
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 48.4 bits (116), Expect = 5e-08
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
+D++PE+ EL F++GDI+ + +Q D NW++
Sbjct: 5 CCRGLYDFEPENQ-----GEL--GFKEGDIITLTNQIDENWYE 40
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 48.9 bits (117), Expect = 5e-08
Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ-DDPNWWQ 285
S + + + G I ++ EL +F+KGD++ ++ ++ +W++
Sbjct: 3 SGSSGRMPTRRWAPGTQCITKCEHTRPKP-----GEL--AFRKGDVVTILEACENKSWYR 55
Query: 286 AYRE--GEE 292
G+E
Sbjct: 56 VKHHTSGQE 64
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 50.1 bits (120), Expect = 5e-08
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ V V+ G A G + D+I+ ++G+ I+G +
Sbjct: 48 IYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFA 83
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 49.6 bits (119), Expect = 5e-08
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 1 GATIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
A + I V VVKGG AD G L GD++L ++G + G S +++ T
Sbjct: 29 AAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR-TS 87
Query: 60 QEMTM 64
+T+
Sbjct: 88 SVVTL 92
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 49.7 bits (119), Expect = 5e-08
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + V++ A + G L GD I+E++G+++R S
Sbjct: 41 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS 76
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 48.0 bits (115), Expect = 6e-08
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
A +DYD +D EL +F + D + I D +WW
Sbjct: 3 ATAEYDYDAAEDN-----EL--TFVENDKIINIEFVDDDWWL 37
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 48.4 bits (116), Expect = 6e-08
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ--DDPNWWQA 286
V + + + +EL +F+KG+ + VI + +DP WW+
Sbjct: 9 VQTLYPFSSVTE-----EEL--NFEKGETMEVIEKPENDPEWWKC 46
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 48.5 bits (116), Expect = 6e-08
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
V+A +DY + + EL SFQ+G I++VI ++D W++
Sbjct: 20 VVAIYDYTKDKE-----DEL--SFQEGAIIYVIKKNDDGWYE 54
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 49.0 bits (117), Expect = 6e-08
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 226 RSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ--DDPNW 283
S + ++ + V + + + +EL +F+KG+ + VI + +DP W
Sbjct: 2 SSGSSGLSNGQGSRVLHVVQTLYPFSSVTE-----EEL--NFEKGETMEVIEKPENDPEW 54
Query: 284 WQA 286
W+
Sbjct: 55 WKC 57
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 49.7 bits (119), Expect = 6e-08
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+GR++ G ADR L GD IL +NG I
Sbjct: 45 HKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMP 80
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 52.1 bits (124), Expect = 6e-08
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
R +++ ++ KG AD+T L GD IL +NG ++ + H + TG+E+ +
Sbjct: 99 RENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT-HDEAVQALKKTGKEVVL 157
Query: 65 GREAWKTSHAFRHTEHTHFDVD 86
+ K + V
Sbjct: 158 EVKYMKEVSPYFKNSAGGTSVG 179
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 48.1 bits (115), Expect = 7e-08
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
V A FDY + + EL +F K I+ + + + WW+
Sbjct: 5 FKCAVKALFDYKAQRE-----DEL--TFIKSAIIQNVEKQEGGWWR 43
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 48.5 bits (116), Expect = 7e-08
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
S + A DY+ D L F++ DI+ + +D N W
Sbjct: 6 SPEFAKYARALKDYNVSDT-----SLL--PFKRNDIITITFKDQENKW 46
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 49.7 bits (119), Expect = 7e-08
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 1 GATIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
G E D I V V GG+ R G + GD +L ++G+E+ S
Sbjct: 44 GGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVS 90
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 48.1 bits (115), Expect = 7e-08
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
+S S + A + + D L +F K DI+ V+ Q + NWW
Sbjct: 2 SSGSSGVENLKAQALCSWTAKKD-----NHL--NFSKHDIITVLEQQE-NWWF 46
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 48.6 bits (116), Expect = 7e-08
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 226 RSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
S + + +A + + + + EL SF+KG+ + +I + + NW++
Sbjct: 2 SSGSSGKPPTYQVLEYGEAVAQYTFKGDLE-----VEL--SFRKGEHICLIRKVNENWYE 54
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 49.2 bits (118), Expect = 7e-08
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
R + V R+ + G A R G + GD+I+EING R +
Sbjct: 32 REYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMT 73
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 47.6 bits (114), Expect = 7e-08
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
G +A +D++PE+D EL +GDI+ + + W A
Sbjct: 1 GQRAVALYDFEPENDN-----EL--RLAEGDIVFISYKHGQGWLVA 39
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 48.1 bits (115), Expect = 7e-08
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
G + +Y +++ EL S Q G+++ VI +++ WW E+
Sbjct: 7 GLEQYVVVSNYKKQEN-----SEL--SLQAGEVVDVIEKNESGWWFVSTSEEQ 52
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 48.0 bits (115), Expect = 8e-08
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
FD+ + KEL + QKGDI+++ + D NW +
Sbjct: 4 ARLKFDFQAQSP-----KEL--TLQKGDIVYIHKEVDKNWLE 38
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 48.2 bits (115), Expect = 8e-08
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
M Y E+ + +KGDIL +++ + +WW+ +
Sbjct: 1 MGAPPLPPYSAGGR------EV--TMKKGDILTLLNSTNKDWWKVEVNDRQ 43
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 49.4 bits (118), Expect = 8e-08
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + V++ A + G L GD I+E++G+++R S
Sbjct: 61 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS 96
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 48.8 bits (117), Expect = 8e-08
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 6 NEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
N I + +V A G L GD IL +NG ++R +
Sbjct: 33 NTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNST 74
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 48.9 bits (117), Expect = 9e-08
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRG 44
+ + V ++ GG A + + GDE++ ING + G
Sbjct: 31 LEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG 70
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 49.0 bits (117), Expect = 9e-08
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
G ++ I +D+ E EL + G+ L + + + W+ A G
Sbjct: 3 LGSLYAIVLYDFKAEKA-----DEL--TTYVGENLFICAHHNCEWFIAKPIG 47
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1,
HOST-virus interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 48.4 bits (116), Expect = 9e-08
Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+ V + K + G + GD+I+ ++G ++G + ++L TGQ + +
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTVLL 87
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 47.9 bits (114), Expect = 1e-07
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 232 QTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
+S G + V A D+ D L + + GD++ V+ Q W+ +
Sbjct: 9 HSSGLVPRGSLKVRALKDFWNLHDP----TAL--NVRAGDVITVLEQHPDGRWKGHIHES 62
Query: 292 ED 293
+
Sbjct: 63 QR 64
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 49.4 bits (118), Expect = 1e-07
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 10 AVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
++ V + G A G + GDE+LEIN + G+S I+ ++ +
Sbjct: 52 SIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKT-APSKVKL 105
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 47.2 bits (113), Expect = 1e-07
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
F+Y P+++ EL + GDI+ + + + WW
Sbjct: 4 CKVLFEYIPQNE-----DEL--ELKVGDIIDINEEVEEGWWSGTLNN 43
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 47.6 bits (114), Expect = 1e-07
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 8/59 (13%)
Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ-DDPNWWQAYREG 290
+S S A + E D EL SF G + + +P W + G
Sbjct: 2 SSGSSGTPFRKAKALYACKAEHD-----SEL--SFTAGTVFDNVHPSQEPGWLEGTLNG 53
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 48.5 bits (116), Expect = 1e-07
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ V R+ + G A G L EGD+IL +NG +++
Sbjct: 39 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLL 74
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A*
1mc7_A
Length = 108
Score = 48.6 bits (116), Expect = 1e-07
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 6 NEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
GD I +G ++KGG G + GD +L++N + S
Sbjct: 29 ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMS 70
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 48.7 bits (116), Expect = 1e-07
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
T + + + + +A + G + EGD I++INGIE++ +
Sbjct: 40 YRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE 85
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 48.1 bits (115), Expect = 1e-07
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 3 TIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
GD I + ++++GG A + G L GD +L +N ++
Sbjct: 26 NQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVR 70
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural
genomics, alternative splicing, cell cycle, cell
division, cell junction, coiled coil; NMR {Mus
musculus} PDB: 2ogp_A
Length = 111
Score = 48.5 bits (116), Expect = 1e-07
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ V ++ G A + G L GD ++E+NG+++ GKS
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKS 76
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 117
Score = 48.6 bits (116), Expect = 2e-07
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 1 GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
G +I + + V +V G +A + GL GD++LE NGI +R + I+
Sbjct: 33 GISIVSGEKGGIYVSKVTVGSIAHQAGL-EYGDQLLEFNGINLRSATEQQARLIIGQ-QC 90
Query: 60 QEMTM 64
+T+
Sbjct: 91 DTITI 95
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 47.4 bits (113), Expect = 2e-07
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTL 296
S G Y ++L S G ++ ++ ++ WWQ +
Sbjct: 3 SGSSGEIAQVTSAYVASGS-----EQL--SLAPGQLILILKKNTSGWWQGELQARGKKRQ 55
Query: 297 AG 298
G
Sbjct: 56 KG 57
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 48.6 bits (116), Expect = 2e-07
Identities = 12/50 (24%), Positives = 22/50 (44%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
+ + V V+ G A + G + GD I+ IN + + G + V +
Sbjct: 40 DEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLF 89
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 47.4 bits (113), Expect = 2e-07
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWW 284
S + K +DYD + EL S +++ V S D +W
Sbjct: 3 SGSSGLNDLKESSNNRKARVLYDYDAANS-----TEL--SLLADEVITVFSVVGMDSDWL 55
Query: 285 QAYREGEE 292
R ++
Sbjct: 56 MGERGNQK 63
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 48.5 bits (116), Expect = 2e-07
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 7 EGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
GD I V +++ GG A + G L GD +L +N + +
Sbjct: 51 PGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVT 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 2e-07
Identities = 42/217 (19%), Positives = 65/217 (29%), Gaps = 74/217 (34%)
Query: 81 THFDVDEILTYEEVSLYYPRSNEKRPIVLIGPP------NIGRHELRQRLMEDSDRFAAA 134
+H + + E+SL N + +V+ GPP N+ + + D R
Sbjct: 358 SHLPAGKQV---EISLV----NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR---- 406
Query: 135 IPHTSRPMKDGEVDGQDYHFITRAQFELDILARKFIEHGEYEKSYYGLRTKLDKLQAGIP 194
IP + R +K F R F L + + F H L D + +
Sbjct: 407 IPFSERKLK----------FSNR--F-LPVASP-F--HSHL------LVPASDLINKDLV 444
Query: 195 TLNFDIYA--L------TETW-------------LTDEI-NDP-------ELGFSKFNVF 225
N A + T + D I P + + F
Sbjct: 445 KNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Query: 226 ----RSDRTKQTSHKSDGGGMHVI--AHFDYDPEDDM 256
S T DG G+ VI D +P+DD
Sbjct: 505 GPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Score = 52.0 bits (124), Expect = 2e-07
Identities = 30/155 (19%), Positives = 48/155 (30%), Gaps = 53/155 (34%)
Query: 60 QEMTMGREAWKTSHAFR--------HTEHTH-FDVDEILTYEEVSLYYPRSNEKRPIVLI 110
QE MG + +KTS A + H + T+ F + +I+ +N +
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIV----------INNPVNLTIHF 1676
Query: 111 GPPNIGRHELRQRLME-DSDRFAAAIPHTSRPMKDGEVDGQDYHF--------ITR---- 157
G G+ +R+ + T + K+ Y F T+
Sbjct: 1677 GGEK-GK-RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 158 -------AQFELDILARKFIE--------H--GEY 175
A FE L K + H GEY
Sbjct: 1735 ALTLMEKAAFED--LKSKGLIPADATFAGHSLGEY 1767
Score = 43.9 bits (103), Expect = 7e-05
Identities = 72/415 (17%), Positives = 126/415 (30%), Gaps = 182/415 (43%)
Query: 105 RPIVL-IG--------PPNIGRH--ELRQR----LMEDSDRFAAA-------------IP 136
RP+ L G P +L+++ L E ++ FAA +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 137 HTSRPMKDGEVDGQDYHFITRA--QFE---L---DI--LARKFIEHGEYE--------KS 178
+ S ++ +V GQ + +FE L DI LA K ++ + K+
Sbjct: 67 YVSSLVEPSKV-GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 179 YYGLRTKLDK----------LQAGIPTLNFDIYAL------TETWLTDEINDPELGFSKF 222
Y R + +A + N + A+ T+ + +E+ +L + +
Sbjct: 126 YITARIMAKRPFDKKSNSALFRA-VGEGNAQLVAIFGGQGNTDDYF-EELR--DL-YQTY 180
Query: 223 NVFRSD-------------RTKQTSHKSDGGGMHVIA---HFDYDPEDD--MYIP----- 259
+V D RT + K G++++ + P+ D + IP
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 260 ------------CKELGMSFQ------KGDILH--------VISQDDPNW---------- 283
K LG + KG H I++ D +W
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD-SWESFFVSVRKA 299
Query: 284 -----W------QAYR----------------EGEEDHTLA--GTSLDAIRT-------- 306
+ +AY EG L+ + + ++
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 307 ----------VVNAGKICVLNLHPQSLKILRSSDLKPFVIFVAPPPFELLKQKRI 351
+VN K V++ PQSL L + K AP L Q RI
Sbjct: 360 LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK----APSG---LDQSRI 407
Score = 32.7 bits (74), Expect = 0.24
Identities = 21/156 (13%), Positives = 44/156 (28%), Gaps = 50/156 (32%)
Query: 199 DIY----ALTETW-LTDEINDPELGFSKFNVFRSDRTKQTSHKSDGGGMHVIAHFD---Y 250
D+Y A + W D GFS ++ ++ T H G + ++ +
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 251 DPEDDMYIPCKELGMSFQKGDI-LHVISQDDPNW-------------------WQAYRE- 289
+ D + +++ F++ + + ++ +
Sbjct: 1694 ETIVDGKLKTEKI---FKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 290 G--EEDHTLAGTSL----------------DAIRTV 307
G D T AG SL + V
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 46.8 bits (112), Expect = 2e-07
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD-DPNWWQAYREGEE 292
+A +D+ D L S KG+ L V+ + + W +A + +
Sbjct: 8 FVALYDFVASGD-----NTL--SITKGEKLRVLGYNHNGEWCEAQTKNGQ 50
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 48.4 bits (115), Expect = 2e-07
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
+ + +++ E D EL G+ L + + D W+ A
Sbjct: 2 APLFAVTLYEFKAERD-----DEL--DVSPGENLSICAHYDYEWFIAKPIN 45
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 48.6 bits (116), Expect = 2e-07
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 5 RNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
+E D + + +V G A G + GD I+ +N + G + V I
Sbjct: 38 GDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIF 88
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 47.7 bits (114), Expect = 2e-07
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + +++ GG A G L D +L +N +++
Sbjct: 36 IFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVV 71
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 48.3 bits (115), Expect = 2e-07
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 RNEGDAVIVGRVVKGGLADR-TGLLHEGDEILEINGIEIRGKS 46
++ VIV RV G AD L+EGD+++ ING +I +
Sbjct: 37 YDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT 79
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens}
PDB: 3nfl_A 2vph_A
Length = 107
Score = 47.9 bits (114), Expect = 2e-07
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 5 RNEGDAVIVGRVVKGGLADR-TGLLHEGDEILEINGIEIRGKS 46
++ VIV RV G AD L+EGD+++ ING +I +
Sbjct: 39 YDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT 81
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 47.8 bits (114), Expect = 2e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ +V G A R G L G +LE+N + G +
Sbjct: 48 ISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLT 81
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 48.2 bits (115), Expect = 2e-07
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ V R+ + G A G L EGD+IL +NG +++
Sbjct: 49 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLL 84
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 47.7 bits (114), Expect = 2e-07
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 3 TIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
GD I V ++++GG A + G L GD++L +N + + +
Sbjct: 26 NQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVT 70
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 46.5 bits (111), Expect = 2e-07
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+A +D++PE+D EL +GDI+ + + W A
Sbjct: 7 RAVALYDFEPEND-----NEL--RLAEGDIVFISYKHGQGWLVA 43
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 47.7 bits (114), Expect = 2e-07
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 6 NEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
GD I V V G A G L GD+I+ +NG + G +
Sbjct: 49 PHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVT 90
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 47.2 bits (113), Expect = 3e-07
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+ V V+ G A+ G +H+GD +L +NG+ + G + + L TGQ + +
Sbjct: 35 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHL 87
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 46.5 bits (111), Expect = 3e-07
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ--DDPNWWQAYREGE 291
S G +A +++ D +EL S ++GD++ + S+ D WW +GE
Sbjct: 3 SGSSGGTAVARYNFAARDM-----REL--SLREGDVVRIYSRIGGDQGWW----KGE 48
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 46.5 bits (111), Expect = 3e-07
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQ 285
S G + F Y+ ++D EL + ++GDI+ +I++D D WW+
Sbjct: 3 SGSSGDYCKVIFPYEAQND-----DEL--TIKEGDIVTLINKDCIDVGWWE 46
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 46.7 bits (111), Expect = 3e-07
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 234 SHKSDGGGMH-VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
S S G ++ DY+ +++ FQ+G + V+ ++ WW
Sbjct: 2 SSGSSGNLKDVYVSIADYEGDEE------TA--GFQEGVSMEVLERNPNGWWYCQILDGV 53
Query: 293 D 293
Sbjct: 54 K 54
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 47.4 bits (113), Expect = 3e-07
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ V ++V G A + G L D I+E+NG ++ +
Sbjct: 43 IFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRAT 78
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 46.0 bits (110), Expect = 3e-07
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVIS-QDDPNWWQA 286
G I +D+ E EL + + GD ++++ + +WW
Sbjct: 1 GMERGIVQYDFMAESQ-----DEL--TIKSGDKVYILDDKKSKDWWMC 41
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 47.1 bits (112), Expect = 3e-07
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 12/64 (18%)
Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD-----DP 281
++ S + G A FDY+ D +EL + ++GD + V+SQD D
Sbjct: 15 TENLYFQSMGTTPAGPVWTAVFDYEAAGD-----EEL--TLRRGDRVQVLSQDCAVSGDE 67
Query: 282 NWWQ 285
WW
Sbjct: 68 GWWT 71
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 47.3 bits (113), Expect = 3e-07
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+ V V+ G A+ G +H+GD +L +NG+ + G + + L TGQ + +
Sbjct: 44 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHL 96
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 46.0 bits (110), Expect = 3e-07
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP--NWWQ 285
G +A + + E+ +L F+KGD++ ++ + D +WW
Sbjct: 1 GSSPKAVALYSFAGEESG-----DL--PFRKGDVITILKKSDSQNDWWT 42
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 47.8 bits (114), Expect = 3e-07
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 7 EGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
G A I V ++ G A + G L GD ++E+NG+++ GKS V +L
Sbjct: 55 GGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLL 103
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 49.3 bits (117), Expect = 4e-07
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 8/52 (15%)
Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD-DPNWWQAYREGEE 292
M IA +D+ D EL SF++GDIL V++++ D NW++A G++
Sbjct: 1 MEAIAKYDFKATAD-----DEL--SFKRGDILKVLNEECDQNWYKAELNGKD 45
Score = 40.4 bits (94), Expect = 4e-04
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 7/51 (13%)
Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
+V A FD+DP++D EL F++GD +HV+ DPNWW+ G+
Sbjct: 159 TYVQALFDFDPQED-----GEL--GFRRGDFIHVMDNSDPNWWKGACHGQT 202
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 46.4 bits (111), Expect = 4e-07
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 1 GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
G T+ G A ++ V++G AD GL GD+IL +N I ++ S
Sbjct: 16 GFTLS--GQAPCVLSCVMRGSPADFVGL-RAGDQILAVNEINVKKAS 59
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 45.7 bits (109), Expect = 4e-07
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
G+ V A +DYD ++ EL SF+ GD L + ++D W
Sbjct: 1 AKGVRVRALYDYDGQEQ-----DEL--SFKAGDELTKLGEEDEQGW 39
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 45.7 bits (109), Expect = 4e-07
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
+ A +DY +D+ E+ SF+ GD + + D W
Sbjct: 2 AMANLRTYRAMYDYSAQDE-----DEV--SFRDGDYIVNVQPIDDGWMY 43
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 45.7 bits (109), Expect = 4e-07
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 10/52 (19%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ---DDPNWWQ 285
S G+ A +D P+ EL +F +GDIL ++ Q + WW+
Sbjct: 3 SGSSGLLARALYDNCPDCS-----DEL--AFSRGDILTILEQHVPESEGWWK 47
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural
genomics, PDZ domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Length = 127
Score = 47.5 bits (113), Expect = 4e-07
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ ++ GG A + G L D+++ +NG + GKS
Sbjct: 59 IKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKS 92
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 46.9 bits (112), Expect = 5e-07
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
GA E + V V +GG A R G + D+I+E++GI + G +
Sbjct: 32 GADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVT 77
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 45.8 bits (109), Expect = 5e-07
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 11/64 (17%)
Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDD----PNWWQAYR 288
+S G A + + + EL S L ++ D WW A
Sbjct: 5 SSGSEAEGNQVYFAVYTFKARNP-----NEL--SVSANQKLKILEFKDVTGNTEWWLAEV 57
Query: 289 EGEE 292
G++
Sbjct: 58 NGKK 61
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 46.1 bits (110), Expect = 5e-07
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+ +VK A R GLL I EING + G + DIL +G +T+
Sbjct: 26 KITSIVKDSSAARNGLL-TEHNICEINGQNVIGLKDSQIADILST-SGTVVTI 76
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA,
structural genomics, riken structural
genomics/proteomics initiative, unknown function; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 110
Score = 46.9 bits (112), Expect = 5e-07
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + ++ G A G L GD ILE+NG + G
Sbjct: 38 LYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLG 73
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 46.6 bits (111), Expect = 5e-07
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
G + V +V +G A+R GL GD+I E+NG+ + ++ +L
Sbjct: 32 SEHGLGIFVSKVEEGSSAERAGL-CVGDKITEVNGLSLESTTMGSAVKVL 80
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 45.7 bits (109), Expect = 6e-07
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVIS-QDDPNWWQA 286
+ I +D+ E EL + + GD ++++ + +WW
Sbjct: 2 ASKSKKRGIVQYDFMAESQ-----DEL--TIKSGDKVYILDDKKSKDWWMC 45
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 45.3 bits (108), Expect = 6e-07
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDD-PNWWQAYRE-GEE 292
S G H +A + ++ + + S +G+ L ++ +D W + R+ G E
Sbjct: 3 SGSSGGHCVAIYHFEGSSEG-----TI--SMAEGEDLSLMEEDKGDGWTRVRRKEGGE 53
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium
channel 3 chimera; PDZ domain, PDZ binding, GIRK3
regulation, early endosomes; 1.68A {Rattus norvegicus}
PDB: 3qdo_A 3qgl_A
Length = 107
Score = 46.6 bits (111), Expect = 6e-07
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
V V+ GG ADR G+ +GD ILE+NG+ + G +
Sbjct: 47 VSAVLPGGAADRAGV-RKGDRILEVNGVNVEGAT 79
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 45.8 bits (109), Expect = 6e-07
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 226 RSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP--NW 283
S + + + V A + ++ + +L +FQ GD + VIS+ D +W
Sbjct: 2 SSGSSGHERVGNLNQPIEVTALYSFEGQQP-----GDL--NFQAGDRITVISKTDSHFDW 54
Query: 284 WQ 285
W+
Sbjct: 55 WE 56
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 47.9 bits (113), Expect = 7e-07
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 219 FSKFNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ 278
+ F + + V+ F + E + +L F++G+ L ++S+
Sbjct: 96 LNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERET-----DL--PFEQGERLEILSK 148
Query: 279 DDPNWWQA-YREGEE 292
+ +WW+A G
Sbjct: 149 TNQDWWEARNALGTT 163
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 45.9 bits (109), Expect = 7e-07
Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 11/48 (22%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
I D L + + GDI+ V + W EGE
Sbjct: 21 AIQKRVPCAYDK-----TAL--ALEVGDIVKVTRMNINGQW----EGE 57
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 44.9 bits (107), Expect = 7e-07
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ-DDPNWWQAYREGE 291
+ I +DYD D EL + + G+I+ + + + W + G
Sbjct: 2 VDYIVEYDYDAVHDD-----EL--TIRVGEIIRNVKKLQEEGWLEGELNGR 45
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 45.0 bits (107), Expect = 7e-07
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 9/48 (18%)
Query: 240 GGMHVIAHFDYDPE--DDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
G ++ P D L + + G+++ V + W+
Sbjct: 5 GPIYARVIQKRVPNAYDK-----TAL--ALEVGELVKVTKINVSGQWE 45
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 46.2 bits (110), Expect = 8e-07
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 6 NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
E + V ++ G A G + D+IL ++ + ++G +
Sbjct: 41 GEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMA 81
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 45.5 bits (108), Expect = 8e-07
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
++ + V+A +DY+ +L SFQKGD + V+ + WW+A
Sbjct: 17 GIREAGSEDIIVVALYDYEAIHHE-----DL--SFQKGDQMVVLEESG-EWWKA 62
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 45.8 bits (109), Expect = 9e-07
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
G + V V G LA++ GL GD+IL +N + +
Sbjct: 31 SEHGVGIYVSLVEPGSLAEKEGL-RVGDQILRVNDKSLARVT 71
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 45.9 bits (109), Expect = 1e-06
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 1 GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
G T+R G+ V V + A G EGD I+ I G++ + ++ V +L G
Sbjct: 29 GFTLR--GNTPVQVHFLDPHCSASLAGA-KEGDYIVSIQGVDCKWLTVSEVMKLLKSFGG 85
Query: 60 QEMTM 64
+E+ M
Sbjct: 86 EEVEM 90
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 45.8 bits (109), Expect = 1e-06
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
GA + E + V V +GG A R G + D ++E++G + G + +L
Sbjct: 27 GADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVL 80
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 44.6 bits (106), Expect = 1e-06
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQ 285
+ F Y+ ++D EL + ++GDI+ +I++D D WW+
Sbjct: 1 ASDYCKVIFPYEAQND-----DEL--TIKEGDIVTLINKDCIDVGWWE 41
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 48.7 bits (115), Expect = 1e-06
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 228 DRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+ V+ F + E + +L F++G+ L ++S+ + +WW+A
Sbjct: 134 TEASLLAAYKKPIIEVVVGTFKFTGERET-----DL--PFEQGERLEILSKTNQDWWEA 185
Score = 38.7 bits (89), Expect = 0.002
Identities = 8/66 (12%), Positives = 18/66 (27%), Gaps = 5/66 (7%)
Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+ + FD P + +KG + V + ++A
Sbjct: 233 ASTSSDNIELQPRLPAKAKVTFDRVPNAYD-----PTQLRVKKGQTVLVTQKMSNGMYKA 287
Query: 287 YREGEE 292
+G+
Sbjct: 288 ELDGQI 293
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 45.5 bits (108), Expect = 1e-06
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 1 GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
G TI D+ V V V GG A+R GL + D +L++N +
Sbjct: 29 GFTIC--CDSPVRVQAVDSGGPAERAGL-QQLDTVLQLNERPVEHWK 72
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 44.7 bits (106), Expect = 1e-06
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-NWWQA 286
+S + + Y EL + ++ ++L VI D +W +A
Sbjct: 5 SSGTLRNYPLTCKVVYSYKASQP-----DEL--TIEEHEVLEVIEDGDMEDWVKA 52
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 44.6 bits (106), Expect = 1e-06
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
GG IA + Y + +L +F +G+ + V +D WW
Sbjct: 4 GSSGGEEYIALYPYSSVEP-----GDL--TFTEGEEILVTQKDG-EWWTGSIGDRS 51
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 46.0 bits (109), Expect = 1e-06
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
G + + V G A+ +GL GD+ILE+NG
Sbjct: 42 AEYGLGIYITGVDPGSEAEGSGL-KVGDQILEVNGRSFLNIL 82
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 44.1 bits (105), Expect = 1e-06
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQ 285
+ G + F Y ++ EL +F++G+I+H+IS++ + WW+
Sbjct: 2 AMGAKEYCRTLFPYTGTNED-----EL--TFREGEIIHLISKETGEAGWWK 45
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 44.2 bits (105), Expect = 1e-06
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
G V+ ++D+ + EL S ++ D+L V+ WW+
Sbjct: 4 GSGALKWVLCNYDFQARNS-----SEL--SVKQRDVLEVLDDSR-KWWKV 45
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 44.7 bits (106), Expect = 1e-06
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 12/56 (21%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-----NWWQAY-REGEE 292
A +D+ PE+ E+ ++ +KGD++ ++S+ DP +WW+ + G
Sbjct: 16 FARALYDFVPENP------EMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNI 65
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 46.1 bits (109), Expect = 1e-06
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
D + V +V +GG A GL GD I+++NG + GK+ V ++
Sbjct: 53 QRNRLEPMDTIFVKQVKEGGPAFEAGL-CTGDRIIKVNGESVIGKTYSQVIALI 105
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 44.3 bits (105), Expect = 1e-06
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 12/58 (20%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-----NWWQAY-REGEE 292
A +D+ PE+ E+ ++ +KGD++ ++S+ DP +WW+ + G
Sbjct: 7 HHFARALYDFVPENP------EMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNI 58
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 45.0 bits (107), Expect = 2e-06
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 1 GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
G T+ GD V+V V GG A + G+ EGD I+++NG + S
Sbjct: 22 GFTVS--GDRIVLVQSVRPGGAAMKAGV-KEGDRIIKVNGTMVTNSS 65
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 45.2 bits (107), Expect = 2e-06
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 12/56 (21%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-----NWWQAY-REGEE 292
A +D+ PE+ E+ ++ +KGD++ ++S+ DP +WW+ + G
Sbjct: 16 FARALYDFVPENP------EMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNI 65
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 44.0 bits (104), Expect = 2e-06
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
+ F Y E + EL S G + V+ WW+ G+
Sbjct: 2 IPAFVXFAYVAERE-----DEL--SLVXGSRVTVMEXCSDGWWRGSYNGQI 45
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 44.7 bits (106), Expect = 2e-06
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQ 285
G +VIA Y ++ L SF +GD++ ++ +P W
Sbjct: 7 GSGYVIALRSYITDNC-----SLL--SFHRGDLIKLLPVATLEPGWQF 47
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
+ A + Y+ + D E+ S GDI+ VI DD + W
Sbjct: 3 MEAIYAYEAQGD-----DEI--SIDPGDIITVIRGDDGSGW 36
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 44.2 bits (105), Expect = 2e-06
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+ + V+A FDY + + +EL +K + L ++ +WW+
Sbjct: 3 TMAEEVVVVAKFDYVAQQE-----QEL--DIKKNERLWLLDDSK-SWWRV 44
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 44.6 bits (106), Expect = 2e-06
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + R+ GG A + G+ GD +L I+G +
Sbjct: 29 LSISRLTPGGKAAQAGV-AVGDWVLSIDGENAGSLT 63
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 44.9 bits (106), Expect = 2e-06
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 227 SDRTKQTSHKSDGGGMH-VIAHFDYDPEDDMYI-PCKELGMSFQKGDILHVISQDDPNWW 284
S + TS + G +H +A + Y+P D P EL G L+V D + +
Sbjct: 2 SSGSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAEL--PLTAGKYLYVYGDMDEDGF 59
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 46.9 bits (111), Expect = 2e-06
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRG 44
G + + ++KGG AD GL GDEI+ ING I
Sbjct: 106 LEFGCGLFISHLIKGGQADSVGL-QVGDEIVRINGYSISS 144
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 43.9 bits (104), Expect = 2e-06
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 233 TSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQ 285
+ + F Y+ ++D EL + ++GDI+ +I++D D WW+
Sbjct: 1 SMDSRTKSKDYCKVIFPYEAQND-----DEL--TIKEGDIVTLINKDCIDVGWWE 48
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 44.6 bits (106), Expect = 2e-06
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+ V KGG AD GL + D I+E+NG+ + + V D + +G+ +T+
Sbjct: 29 SFIKEVQKGGPADLAGL-EDEDVIIEVNGVNVLDEPYEKVVDRIQS-SGKNVTL 80
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 43.8 bits (104), Expect = 2e-06
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPN---WWQAYREGEE 292
+ A +D E EL SF+KGDI+ V+ QD WW G +
Sbjct: 3 NVLAKALYDNVAESP-----DEL--SFRKGDIMTVLEQDTQGLDGWWLCSLHGRQ 50
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 44.2 bits (105), Expect = 2e-06
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + R+ G A ++ L +GD ++ I+G+ +
Sbjct: 27 LTISRITPGSKAAQSQL-SQGDLVVAIDGVNTDTMT 61
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 44.7 bits (106), Expect = 2e-06
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + + GG A + + GD +L I+GI +G +
Sbjct: 31 LTISSLKDGGKASQAHV-RIGDVVLSIDGISAQGMT 65
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 43.8 bits (104), Expect = 2e-06
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVIS---QDDPNWWQ 285
G V A +DY+ + D EL SF +G I+ +++ QDD +W+
Sbjct: 7 GVCFVKALYDYEGQTD-----DEL--SFPEGAIIRILNKENQDDDGFWE 48
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 45.1 bits (107), Expect = 2e-06
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 6 NEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIH 48
N G+ I V + +G +A R G L E D+IL ING + H
Sbjct: 45 NRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITH 88
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 44.6 bits (106), Expect = 2e-06
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+IV +V + G A+ L GD I+ ING
Sbjct: 32 IIVTKVTERGKAEAADL-RPGDIIVAINGQSAENML 66
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 44.3 bits (105), Expect = 2e-06
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
V V + G D GL D +L++N + R +V ++
Sbjct: 34 VYVKNIRPAGPGDLGGL-KPYDRLLQVNHVRTRDFDCCLVVPLI 76
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 48.0 bits (113), Expect = 3e-06
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
VI+ ++ GG A R+G L GD+I+ ING + G + I+
Sbjct: 234 VILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGII 277
Score = 43.0 bits (100), Expect = 1e-04
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
I+ +++GG+A+R G+ G I+EING + + + L + E+ M
Sbjct: 318 IICSLMRGGIAERGGV-RVGHRIIEINGQSVVATAHEKIVQALSN-SVGEIHM 368
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 44.6 bits (106), Expect = 3e-06
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + RV G A L GD I ING +
Sbjct: 34 LTISRVHAGSKAALAAL-CPGDLIQAINGESTELMT 68
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 96
Score = 44.3 bits (105), Expect = 3e-06
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
G I + V V GG A G L GD+IL++N S DIL
Sbjct: 24 GFHISESLP-LTVVAVTAGGSAH--GKLFPGDQILQMNNEPAEDLSWERAVDIL 74
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 44.4 bits (105), Expect = 3e-06
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 235 HKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDD----PNWWQAYREG 290
+ + A +D+ D +E+ SF+ GD+L++ ++ W A +G
Sbjct: 11 ASGEDDHVVARAEYDFVAVSD-----EEI--SFRAGDMLNLALKEQQPKVRGWLLASLDG 63
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 44.7 bits (106), Expect = 3e-06
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + +V+ A R GL EGD++L +N ++ +
Sbjct: 43 IFISKVIPDSDAHRAGL-QEGDQVLAVNDVDFQDIE 77
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 43.5 bits (103), Expect = 3e-06
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
V F P D L +KGDI+ +IS+ W
Sbjct: 14 VHTDFTPSPYDT-----DSL--KLKKGDIIDIISKPPMGTWM 48
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 44.6 bits (106), Expect = 3e-06
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + + + + RV + G A R G+ GD++LE+NG+ ++G
Sbjct: 42 KGDDEGIFISRVSEEGPAARAGV-RVGDKLLEVNGVALQGAE 82
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 44.7 bits (106), Expect = 3e-06
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
V + + G+A R G+ D ++E+NG + S V + + +G +
Sbjct: 34 VYMTDITPQGVAMRAGV-LADDHLIEVNGENVEDASHEEVVEKVKK-SGSRVMF 85
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 44.3 bits (105), Expect = 3e-06
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 1 GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
G TI D+ V V V GG A+R GL + D +L++N +
Sbjct: 17 GFTIC--CDSPVRVQAVDSGGPAERAGL-QQLDTVLQLNERPVEHWK 60
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 44.3 bits (105), Expect = 3e-06
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+++ R+ G A L GD IL I+G +
Sbjct: 31 LVITRITPGSKAAAANL-CPGDVILAIDGFGTESMT 65
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 43.0 bits (102), Expect = 3e-06
Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
A +D+ + +KGD++++ ++ W
Sbjct: 3 FEAAYDFPGSGS------PSELPLKKGDVIYITREEPSGWSLG 39
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight
junctions, PATJ, structural genomics; NMR {Homo
sapiens}
Length = 128
Score = 44.7 bits (106), Expect = 4e-06
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGI 40
V V G +ADR L E D+IL IN
Sbjct: 58 VKDVQPGSVADRDQRLKENDQILAINHT 85
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 43.1 bits (102), Expect = 4e-06
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
A +D+ + +KGDI+ + + W A
Sbjct: 5 FEAAYDFPGSGS------SSELPLKKGDIVFISRDEPSGWSLA 41
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 43.1 bits (102), Expect = 4e-06
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
S G V A Y D E+ SF KGD+ V ++ + W
Sbjct: 2 SSGSSGRRVRAILPYTKVPDT----DEI--SFLKGDMFIVHNELEDGWM 44
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding,
protein-binding, RHOB, nitration, cytoplasm, PDZ
domain, CAsp8; 1.82A {Homo sapiens}
Length = 109
Score = 44.0 bits (104), Expect = 4e-06
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 1 GATIRNEGDA-VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTG 59
G T+R G+A V V + A G EGD I+ I ++ + ++ V +L
Sbjct: 37 GFTLR--GNAPVQVHFLDPYCSASVAGA-REGDYIVSIQLVDCKWLTLSEVMKLLKSFGE 93
Query: 60 QEMTM 64
E+ M
Sbjct: 94 DEIEM 98
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 42.6 bits (101), Expect = 5e-06
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
V+A + YD +L SF+KG+ + V+ + WW+A
Sbjct: 10 VVALYPYDGIHP-----DDL--SFKKGEKMKVLEEHG-EWWKA 44
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 44.2 bits (104), Expect = 5e-06
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL----VGLT---GQEMT 63
+ V V + GLA + GL GDEILEIN + ++ D L +GL E+
Sbjct: 46 LYVNSVKETGLASKKGL-KAGDEILEINNRAADALNSSMLKDFLSQPSLGLLVRTYPELE 104
Query: 64 MGREAWKTS 72
G E+ +S
Sbjct: 105 EGVESGPSS 113
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 43.6 bits (103), Expect = 5e-06
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 239 GGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD--DPNWWQAYREGEE 292
G A + ++ + E+ SF GDI+ V + +P W +G
Sbjct: 3 SGSSGYRALYPFEARNH-----DEM--SFNSGDIIQVDEKTVGEPGWLYGSFQGNF 51
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 43.4 bits (103), Expect = 5e-06
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
++V +V + G A L GD I+ ING G
Sbjct: 28 IMVTKVAERGKAKDADL-RPGDIIVAINGESAEGML 62
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 43.4 bits (103), Expect = 5e-06
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + + GG A + + GD +L I+GI +G +
Sbjct: 29 LTISSLKDGGKAAQANV-RIGDVVLSIDGINAQGMT 63
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 42.7 bits (101), Expect = 5e-06
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 13/50 (26%)
Query: 244 VIAHFDYDPE--DDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGE 291
A P D L + + GDI+ V + W EGE
Sbjct: 4 AKAIQKRVPCAYDK-----TAL--ALEVGDIVKVTRMNINGQW----EGE 42
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 44.0 bits (104), Expect = 5e-06
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+ + + V G L+ GL GD+I+E+NG++ ++L +++
Sbjct: 37 PIQKPGIFISHVKPGSLSAEVGL-EIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISI 95
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 42.6 bits (101), Expect = 5e-06
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 8/44 (18%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+ + +D+ + EL S K D+L ++ WW+
Sbjct: 3 YAKSKYDFVARNS-----SEL--SVMKDDVLEILDDRR-QWWKV 38
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 45.8 bits (108), Expect = 5e-06
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 228 DRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAY 287
+ + + G +A Y + E+ S +G+ + VI + WW
Sbjct: 68 SPDETEDPEPNYAGEPYVAIKAYTAVEG-----DEV--SLLEGEAVEVIHKLLDGWWVIR 120
Query: 288 REGEE 292
++
Sbjct: 121 KDDVT 125
Score = 45.0 bits (106), Expect = 9e-06
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
A DY+ E+ + GD++ V+ + + WW + +
Sbjct: 14 YRAIADYEKTSG-----SEM--ALSTGDVVEVVEKSESGWWFCQMKAKR 55
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 44.0 bits (104), Expect = 6e-06
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+++ V+ GG AD GLL E D ++ +NG +
Sbjct: 48 IVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVL 81
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 44.0 bits (104), Expect = 6e-06
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 1 GATIRNEGDAVI-VGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGL-T 58
G + D I V V++ A + GL EGD+IL +N ++ L+ L
Sbjct: 42 GLRLAGGNDVGIFVAGVLEDSPAAKEGL-EEGDQILRVNNVDFTNIIREEAVLFLLDLPK 100
Query: 59 GQEMTM 64
G+E+T+
Sbjct: 101 GEEVTI 106
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation,
cell projection, disease mutation, membrane,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 216
Score = 45.5 bits (107), Expect = 6e-06
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 1 GATIRNEGDA--VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLT 58
G + ++ + V A+ +GL D I+E+NG+ + GK V +
Sbjct: 23 GFNLHSDKSKPGQFIRSVDPDSPAEASGL-RAQDRIVEVNGVCMEGKQHGDVVSAIRA-G 80
Query: 59 GQEMTM 64
G E +
Sbjct: 81 GDETKL 86
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 43.4 bits (103), Expect = 6e-06
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + + + + RV + G A R G+ GD++LE+NG+ ++G
Sbjct: 30 KGDDEGIFISRVSEEGPAARAGV-RVGDKLLEVNGVALQGAE 70
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 44.9 bits (106), Expect = 6e-06
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
GA + E + V V +GG A R G + D ++E++G + G +
Sbjct: 103 GADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT 148
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 42.7 bits (101), Expect = 8e-06
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 12/52 (23%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHT 295
V + + E+ + Q+ D++ V+ Q+D W GE
Sbjct: 20 VEITKAFFAKQAD-----EV--TLQQADVVLVLQQED-GWL----YGERLRD 59
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 42.7 bits (101), Expect = 8e-06
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+ V G A R+GL D ++E+NG + G V + E +
Sbjct: 30 QYIRSVDPGSPAARSGL-RAQDRLIEVNGQNVEGLRHAEVVASIKA-REDEARL 81
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 43.1 bits (102), Expect = 8e-06
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
I+ + G A+ GL D ++ +NG +
Sbjct: 32 QIIKDIEPGSPAEAAGL-KNNDLVVAVNGKSVEALD 66
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 46.1 bits (108), Expect = 9e-06
Identities = 18/127 (14%), Positives = 43/127 (33%), Gaps = 11/127 (8%)
Query: 170 IEHGEYEKSYYGLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDR 229
++ E L + L + + D + + ++ + R+ +
Sbjct: 99 VKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDSEQVPQALRRLRPRTRK 158
Query: 230 TKQTSHKSDGGGM----HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
K S + + A FD+ EL +F+ GD++ ++S+ + +W +
Sbjct: 159 VKSVSPQGNSVDRMAAPRAEALFDFTGNSK-----LEL--NFKAGDVIFLLSRINKDWLE 211
Query: 286 AYREGEE 292
G
Sbjct: 212 GTVRGAT 218
Score = 28.8 bits (63), Expect = 3.0
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 262 ELGMSFQKGDILHVISQDDPNWWQAYREGEED 293
L +GD++ ++S +D G
Sbjct: 286 ALNYRDAEGDLVRLLSDEDVALMVRQARGLPS 317
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding
protein; PDZ domain, cytoplasm, membrane, polymorphism,
protein binding; 2.70A {Homo sapiens}
Length = 104
Score = 43.2 bits (102), Expect = 9e-06
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
++ ++ + A GL GD + ING+ G +
Sbjct: 50 TLICKIQEDSPAHCAGL-QAGDVLANINGVSTEGFT 84
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 42.0 bits (99), Expect = 9e-06
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
A + YD +DD E+ SF++ +IL V + WW+A
Sbjct: 8 AKALYPYDADDD---DAYEI--SFEQNEILQVSDIEG-RWWKA 44
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 42.7 bits (101), Expect = 1e-05
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
I+ + G A+ GL D ++ +NG +
Sbjct: 31 QIIKDIEPGSPAEAAGLK-NNDLVVAVNGKSVEALD 65
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 42.7 bits (101), Expect = 1e-05
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ V G A++ GL GD ++E+NG + ++
Sbjct: 29 QYIRLVEPGSPAEKAGL-LAGDRLVEVNGENVEKET 63
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 43.9 bits (103), Expect = 1e-05
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD-DPNWWQ 285
A +D+ D EL S ++GDI+ ++++ WW+
Sbjct: 8 AKARYDFCARDR-----SEL--SLKEGDIIKILNKKGQQGWWR 43
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 41.5 bits (98), Expect = 1e-05
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
VIA Y+P D +L F+KG+ L ++ Q WW+A
Sbjct: 9 VIALHSYEPSHD-----GDL--GFEKGEQLRILEQSG-EWWKA 43
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 42.5 bits (100), Expect = 1e-05
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 236 KSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+ VIA +DY + D +EL +K + L ++ WW+
Sbjct: 26 LHMTEEVIVIAKWDYTAQQD-----QEL--DIKKNERLWLLDDSK-TWWRV 68
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 41.5 bits (98), Expect = 1e-05
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
VIA +DY + D +EL +K + L ++ WW+
Sbjct: 7 VIAKWDYTAQQD-----QEL--DIKKNERLWLLDDSK-TWWRV 41
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 42.4 bits (100), Expect = 1e-05
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
V RV + A GL GD I +NG+ + G + DI+ +G + +
Sbjct: 39 TFVARVHESSPAQLAGLT-PGDTIASVNGLNVEGIRHREIVDIIKA-SGNVLRL 90
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 42.3 bits (100), Expect = 1e-05
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ + RV G A L GD I I+G +
Sbjct: 29 LAISRVTPGSKAALANL-CIGDVITAIDGENTSNMT 63
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ
domain, protein, acetylation, cell projection, disease
mutation, membrane; NMR {Homo sapiens}
Length = 128
Score = 42.9 bits (101), Expect = 2e-05
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+ V A+ +GL D I+E+NG+ + GK V + G E +
Sbjct: 35 QFIRSVDPDSPAEASGL-RAQDRIVEVNGVCMEGKQHGDVVSAIRA-GGDETKL 86
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 41.7 bits (98), Expect = 2e-05
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 265 MSFQKGDILHVISQDDPNWWQAYREGEE 292
++ +KGDIL +++ + +WW+ +
Sbjct: 8 VTMKKGDILTLLNSTNKDWWKVEVNDRQ 35
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 42.3 bits (100), Expect = 2e-05
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ V G A + G+ GD ++ + G + G
Sbjct: 32 QFLWEVDPGLPAKKAGM-QAGDRLVAVAGESVEGLG 66
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 41.5 bits (98), Expect = 2e-05
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 234 SHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD-DPNWWQAYRE-GE 291
S S G +D+ E EL + +G+I+ V + + W + GE
Sbjct: 2 SSGSSGMATKARVMYDFAAEPGN----NEL--TVTEGEIITVTNPNVGGGWLEGKNNKGE 55
Query: 292 E 292
+
Sbjct: 56 Q 56
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens}
PDB: 2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 42.4 bits (100), Expect = 2e-05
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+++ V+KGG A+ G L E D + +NG+ +
Sbjct: 41 IVISDVLKGGPAE--GQLQENDRVAMVNGVSMDNVE 74
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70
kDa, Na/PI cotransporter C- terminal-associated
protein, NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 42.5 bits (100), Expect = 2e-05
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
G +R E D ++ + +G A++ GLL +GD +L ING+ + +
Sbjct: 28 GFFLRIEKDTDGHLIRVIEEGSPAEKAGLL-DGDRVLRINGVFVDKEE 74
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 41.6 bits (98), Expect = 2e-05
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
V+A +DY +L SFQKGD + V+ + WW+A
Sbjct: 6 VVALYDYVSWSP-----DDL--SFQKGDQMVVLEESG-EWWKA 40
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 41.9 bits (99), Expect = 2e-05
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ V A+ +GL D I+E+NG+ + GK
Sbjct: 35 QFIRSVDPDSPAEASGL-RAQDRIVEVNGVCMEGKQ 69
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 40.8 bits (96), Expect = 3e-05
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPN-WWQAYREGEEDHT 295
S G V F + ++ L SF +GD+L ++ ++ + W GE D T
Sbjct: 3 SGSSGQKVKTIFPHTAGNNK----TLL--SFAQGDVLTLLIPEEKDGWL----YGEHDTT 52
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 40.2 bits (95), Expect = 3e-05
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
GM + Y +DD I + GD + ++++D + W
Sbjct: 1 GMENKVLYAYVQKDDDEI-------TITPGDKISLVARDTGSGW 37
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 42.3 bits (99), Expect = 4e-05
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+ V RV +GG A+ GL GD+I+++NG ++ + L + + + +
Sbjct: 66 IYVTRVSEGGPAEIAGL-QIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRL 118
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI,
signaling protein; 1.80A {Mus musculus}
Length = 106
Score = 41.3 bits (97), Expect = 4e-05
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 1 GATIRNE--GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
G +R E D ++ + +G A++ GL +GD +L ING+ + +
Sbjct: 16 GFFLRIEKDTDGHLIRVIEEGSPAEKAGL-LDGDRVLRINGVFVDKEE 62
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 41.2 bits (97), Expect = 4e-05
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+V V G A GL GD I ING + G
Sbjct: 36 HVVWSVEDGSPAQEAGL-RAGDLITHINGESVLGLV 70
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 40.1 bits (94), Expect = 5e-05
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
+ DY D F++G+ L VIS + WW+A
Sbjct: 20 LAVLSDYPSPDI-----SPP--IFRRGEKLRVISDEG-GWWKA 54
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 39.6 bits (93), Expect = 6e-05
Identities = 7/21 (33%), Positives = 16/21 (76%)
Query: 265 MSFQKGDILHVISQDDPNWWQ 285
++ +KGDIL +++ + +WW+
Sbjct: 6 VTMKKGDILTLLNSTNKDWWK 26
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 41.0 bits (96), Expect = 6e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ V +GG+A R GL GD ++E+NG +
Sbjct: 47 QYLESVDEGGVAWRAGL-RMGDFLIEVNGQNVVKVG 81
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 39.1 bits (92), Expect = 8e-05
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 239 GGGMHVIAHFDYDP-EDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE 289
G A F + P +D EL + D L V Q + W++AY
Sbjct: 1 GSEQTHRAIFRFVPRHED------EL--ELEVDDPLLVELQAEDYWYEAYNM 44
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 39.2 bits (92), Expect = 8e-05
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHT 295
G M V A F + D+ +SF++GD++ ++ + + W GE + T
Sbjct: 3 LGSGRMRVKAIFSHAAGDN------STLLSFKEGDLITLLVPEARDGWH---YGESEKT 52
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 39.7 bits (93), Expect = 1e-04
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
R + D + V RV G A LL GD+I++ NG
Sbjct: 31 RPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIE 70
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling
protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 39.7 bits (93), Expect = 1e-04
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
R + D + V RV G A LL GD+I++ NG
Sbjct: 39 RPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIE 78
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 42.5 bits (100), Expect = 2e-04
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 225 FRSDRTKQTSHKSDGGGMHVIAHFDYDP--EDDMYIPCKELGMSFQKGDILHVISQ-DDP 281
+ + + S+ +A +D+ ++ + S KG+ L V+ +
Sbjct: 27 RWNSKENLLAGPSENDPNLFVALYDFVASGDNTL---------SITKGEKLRVLGYNHNG 77
Query: 282 NWWQAYREGEE 292
W +A + +
Sbjct: 78 EWCEAQTKNGQ 88
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 40.0 bits (93), Expect = 2e-04
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
+ V +GG+A R GL GD ++E+NG +
Sbjct: 67 QYLESVDEGGVAWRAGL-RMGDFLIEVNGQNVVKVG 101
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 38.2 bits (89), Expect = 2e-04
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
V A Y D E+ SF KGD+ V ++ + W
Sbjct: 8 VRAILPYTKVPDT----DEI--SFLKGDMFIVHNELEDGWMWV 44
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 42.1 bits (99), Expect = 2e-04
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 11/47 (23%)
Query: 244 VIAHFDYDP--EDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288
+A +DY+ E D+ SF+KG+ L +++ + +WW A+
Sbjct: 5 FVALYDYESRTETDL---------SFKKGERLQIVNNTEGDWWLAHS 42
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 38.4 bits (90), Expect = 2e-04
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYRE 289
A F + P + EL + D L V Q + W++AY
Sbjct: 9 HRAIFRFVPRHE-----DEL--ELEVDDPLLVELQAEDYWYEAYNM 47
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 38.1 bits (89), Expect = 2e-04
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 237 SDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPN-WWQAYREGEEDHT 295
S V F + + L SF +GD++ ++ ++ + W GE D +
Sbjct: 2 SHMKKQKVKTIFPHTAGSNK----TLL--SFAQGDVITLLIPEEKDGWL----YGEHDVS 51
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 38.8 bits (90), Expect = 3e-04
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVG 56
+ V V + GLA + GL GDEILEIN + ++ D L
Sbjct: 37 LYVNSVKETGLASKKGLK-AGDEILEINNRAADALNSSMLKDFLSQ 81
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 40.6 bits (94), Expect = 3e-04
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA-YREGEE 292
+V A FD++ D+ ++L F+KGDIL + + + WW A EG+
Sbjct: 137 EYVRALFDFNGNDE-----EDL--PFKKGDILRIRDKPEEQWWNAEDSEGKR 181
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 39.3 bits (91), Expect = 3e-04
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 226 RSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQ 285
S + +S S H +A +++ +L S Q GD++ + W++
Sbjct: 44 GSSGSSGSSGSSGDKERHGVAIYNFQGSGA-----PQL--SLQIGDVVRIQETCGD-WYR 95
Query: 286 AYREG 290
Y
Sbjct: 96 GYLIK 100
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 38.5 bits (89), Expect = 4e-04
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 12/53 (22%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD-----DPNWWQAYREGE 291
V A DY D EL + GD++ VI D W +E +
Sbjct: 47 VQAQHDYTATDT-----DEL--QLKAGDVVLVIPFQNPEEQDEGWLMGVKESD 92
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 40.0 bits (92), Expect = 8e-04
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
S T + ++ VI + D L + + G+++ V + W+
Sbjct: 225 SVNTPLPNLQNGPIYARVIQKRVPNAYDKT-----AL--ALEVGELVKVTKINVSGQWEG 277
Query: 287 YREG 290
G
Sbjct: 278 ECNG 281
Score = 38.4 bits (88), Expect = 0.002
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 222 FNVFRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP 281
R +V A FD++ D+ ++L F+KGDIL + + +
Sbjct: 115 IEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDE-----EDL--PFKKGDILRIRDKPEE 167
Query: 282 NWWQA-YREGEE 292
WW A EG+
Sbjct: 168 QWWNAEDSEGKR 179
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 3; structural genomics consortium, SGC, PDZ
domain, signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 37.9 bits (88), Expect = 9e-04
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
G I + V ++ L +GD I EI ++ + V ++L
Sbjct: 26 GFAIADSPTGQKVKMILDSQWCQG---LQKGDIIKEIYHQNVQNLTHLQVVEVL 76
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 39.0 bits (91), Expect = 0.001
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 240 GGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEEDHTLAGT 299
G VI +DY ++D EL +F KG I++V++++DP+WW +GE +
Sbjct: 1 GSCQVIGMYDYTAQND-----DEL--AFSKGQIINVLNKEDPDWW----KGEVSGQVGLF 49
Query: 300 SLDAIRTVVNAGKICVLNLHPQSLKILRSSDLK 332
+ ++ + L +L ++ K
Sbjct: 50 PSNYVKLTTDMDPSQQWCSDLHLLDMLTPTERK 82
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 38.9 bits (91), Expect = 0.002
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 8/47 (17%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ-DDPNWWQA 286
G IA +++ + ++L F KGD+L +++ DPNW++A
Sbjct: 11 GTECIAKYNFHGTAE-----QDL--PFCKGDVLTIVAVTKDPNWYKA 50
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 36.1 bits (83), Expect = 0.002
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 257 YIPCKELGMSFQKGDILHVISQDDP----NWWQAYREGEE 292
+ ++L +S +GD++ VI + DP N W +
Sbjct: 26 FNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTK 65
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 38.0 bits (87), Expect = 0.002
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 3/99 (3%)
Query: 5 RNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
R + D + V RV G A LL GD+I++ NG H L+ + +
Sbjct: 20 RPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIE-HGQAVSLLKTFQNTVEL 76
Query: 65 GREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNE 103
+ A + V
Sbjct: 77 IIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAA 115
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 36.8 bits (85), Expect = 0.002
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 6 NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
++ D V + VV G A +L G I ING+
Sbjct: 22 HQPDGVQIDSVVPGSPAS--KVLTPGLVIESINGMPTS 57
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 38.5 bits (88), Expect = 0.003
Identities = 8/68 (11%), Positives = 18/68 (26%), Gaps = 5/68 (7%)
Query: 225 FRSDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWW 284
+ G + A + ++ + GDI+ V + W
Sbjct: 221 GSPGAAITPLPSTQNGPVFAKAIQKRV-----PCAYDKTALALEVGDIVKVTRMNINGQW 275
Query: 285 QAYREGEE 292
+ G +
Sbjct: 276 EGEVNGRK 283
Score = 35.8 bits (81), Expect = 0.015
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 265 MSFQKGDILHVISQDDPNWWQA-YREGEE 292
+ F+KG+IL +I + + WW A ++G
Sbjct: 142 LPFKKGEILVIIEKPEEQWWSARNKDGRV 170
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 38.3 bits (89), Expect = 0.003
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 232 QTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYR 288
Q + GG +A +DY+ + +SF+KG+ L +++ + +WW A+
Sbjct: 76 QRAGPLAGGVTTFVALYDYESRTET-------DLSFKKGERLQIVNNTEGDWWLAHS 125
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.003
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 8/28 (28%)
Query: 321 QSLKILRSSDLKPFVIFVAP---PPFEL 345
Q+LK L++S LK + A P +
Sbjct: 20 QALKKLQAS-LKLY----ADDSAPALAI 42
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 38.1 bits (89), Expect = 0.004
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 12/50 (24%)
Query: 239 GGGMHVIAHFDYDP--EDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
G + V+A +DY+ +D+ SFQKGD + V+ + WW+A
Sbjct: 6 GIRIIVVALYDYEAIHHEDL---------SFQKGDQMVVLE-ESGEWWKA 45
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 38.0 bits (88), Expect = 0.004
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 231 KQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREG 290
SDG + A +D+ DD +EL F+ GD++ V+ + WW
Sbjct: 20 AINELISDGSVVCAEALWDHVTMDD-----QEL--GFKAGDVIEVMDATNREWWWGRVAD 72
Query: 291 EEDHTLAG 298
E A
Sbjct: 73 GEGWFPAS 80
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 35.4 bits (82), Expect = 0.004
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 15 RVVKGGLADRTGLLHEGDEILEINGIEIRGKS 46
RV + L EGD I+EIN ++ S
Sbjct: 35 RVKQILDIQGCPGLCEGDLIVEINQQNVQNLS 66
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 37.0 bits (85), Expect = 0.004
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 8/43 (18%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQA 286
VIA Y+P D +L F+KG+ L ++ WW+A
Sbjct: 15 VIALHSYEPSHD-----GDL--GFEKGEQLRILE-QSGEWWKA 49
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 35.9 bits (82), Expect = 0.005
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 6 NEGDAVIVGRVVKGGLA-DRTGLLHEGDEILEINGIEIRGKSIHIVCDIL 54
N V V V + ++ + +H GD ILEING +R + V D +
Sbjct: 41 NYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAI 90
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 34.8 bits (80), Expect = 0.007
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 11/63 (17%)
Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD----DPN 282
S + + + + Y P++D EL GD + + +
Sbjct: 2 SSGSSGSRDIRFANHETLQVIYPYTPQNDD-----EL--ELVPGDFIFMSPMEQTSTSEG 54
Query: 283 WWQ 285
W
Sbjct: 55 WIY 57
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 34.6 bits (80), Expect = 0.007
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 1 GATIRNEGDAVIVGRVVKGGL-ADRTGLLHEGDEILEINGIEIRGKSIH--IVCDILVGL 57
G TI G+ VK + + R+ L EGD I+E+N ++ + H +V ++
Sbjct: 17 GFTIA--DSPGGGGQRVKQIVDSPRSRGLKEGDLIVEVNKKNVQALT-HNQVVDMLVESP 73
Query: 58 TGQEMTM 64
G E+T+
Sbjct: 74 KGSEVTL 80
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 35.0 bits (80), Expect = 0.008
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQ---DDPNWWQAYREGEEDHTLAG 298
+A DY D C+ L + +G +++V S+ +W +G+ LA
Sbjct: 25 AVALQDYMAPD-----CRFL--TIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAA 75
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 36.2 bits (82), Expect = 0.008
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 12/53 (22%)
Query: 244 VIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDP-----NWWQAYREGE 291
V A DY D EL + GD++ VI +P W +E +
Sbjct: 145 VQAQHDYTATDT-----DEL--QLKAGDVVLVIPFQNPEEQDEGWLMGVKESD 190
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria,
peptid module, hydrolase; 2.75A {Homo sapiens} SCOP:
b.36.1.4
Length = 113
Score = 34.6 bits (80), Expect = 0.009
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
V++ +V+ G A R GL GD IL I ++
Sbjct: 37 VLIHKVILGSPAHRAGL-RPGDVILAIGEQMVQ 68
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 36.7 bits (83), Expect = 0.012
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 227 SDRTKQTSHKSDGGGMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVI-SQDDPNWWQ 285
D + G + V A +DY+ ++ EL SF+ GD L + +D+ W +
Sbjct: 414 GDSNPFDDDATSGTEVRVRALYDYEGQEHD-----EL--SFKAGDELTKMEDEDEQGWCK 466
Query: 286 AYRE 289
+
Sbjct: 467 GRLD 470
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 34.2 bits (79), Expect = 0.014
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+ V V + R G+ +GD I+++NG +
Sbjct: 37 IYVQEVAPNSPSQRGGI-QDGDIIVKVNGRPLV 68
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 33.0 bits (75), Expect = 0.016
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 242 MHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQD-DPNWWQA 286
M V + P + GDI+ + + + NWW+
Sbjct: 7 MEVFQEYYGIPPPPGAFGPF---LRLNPGDIVELTKAEAEHNWWEG 49
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin,
membrane protein; 1.65A {Homo sapiens}
Length = 209
Score = 35.1 bits (80), Expect = 0.019
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 6 NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSIHIVCDILVGLTGQEMTM 64
+ V RV + R GL D I+ ING + K + D+L + + M
Sbjct: 13 GGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLN-KDNDTLKDLLKANVEKPVKM 70
Score = 31.2 bits (70), Expect = 0.35
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGI 40
V V A GL D I+ + +
Sbjct: 114 WHVLEVESNSPAALAGLRPHSDYIIGADTV 143
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane,
cell membrane, membrane, metal-binding,
metalloprotease, transmembrane; 1.67A {Escherichia coli
k-12} PDB: 2zpl_A
Length = 95
Score = 33.0 bits (75), Expect = 0.025
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+VG + +A + G E+ ++GIE
Sbjct: 5 VVGEIAANSIAAEAQI-APGTELKAVDGIETP 35
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 35.3 bits (82), Expect = 0.027
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 2 ATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+++ G + + VVKG A + GL + D I+ +N +
Sbjct: 356 GQLKDGGKGIKIDEVVKGSPAAQAGL-QKDDVIIGVNRDRVN 396
Score = 31.9 bits (73), Expect = 0.30
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
V V+ G + + G+ GD I +NG +
Sbjct: 265 AFVSEVLPGSGSAKAGV-KAGDIITSLNGKPLN 296
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane
protein, PDZ domain, hydrolase, inner membrane,
membrane, metal-binding; HET: MLY MSE; 0.98A
{Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 32.8 bits (75), Expect = 0.029
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 12 IVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
++ V A GL GD I+ ++G +
Sbjct: 7 VLENVQPNSAASXAGLQ-AGDRIVXVDGQPLT 37
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 35.4 bits (82), Expect = 0.029
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 1 GATIRNEGDA--VIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
GA + N+G V+V V G A + GL +GD I+ N ++
Sbjct: 373 GAEMSNKGKDQGVVVNNVKTGTPAAQIGL-KKGDVIIGANQQAVK 416
Score = 31.9 bits (73), Expect = 0.37
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
V +V+ A + G+ GD I +NG I
Sbjct: 288 AFVSQVLPNSSAAKAGI-KAGDVITSLNGKPIS 319
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 35.1 bits (81), Expect = 0.031
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 1 GATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSI 47
+ ++ VV G A+ GL G I+ +NG I K
Sbjct: 82 KVLDNDTAYNALISYVVPGSPAEEAGLQ-RGHWIMMMNGDYITKKVE 127
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 32.6 bits (75), Expect = 0.035
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 6 NEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
NE V V V+ A G L GD I I+G I
Sbjct: 2 NEAKGVYVMSVLPNMPAA--GRLEAGDRIAAIDGQPIN 37
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 34.6 bits (80), Expect = 0.039
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 1 GATIRNEGDA--VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRG 44
G + N+ D + VV GG A G + +G + +++ I
Sbjct: 232 GVQVTNDKDTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINS 276
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 34.6 bits (80), Expect = 0.040
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 10/52 (19%)
Query: 1 GATIRNEGDA---------VIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
G +R V V + R G+ GD I+ N +
Sbjct: 369 GLALRAFEQESPPHGNVIGVQVVGASENSAGWRAGI-RPGDIIISANKKPVT 419
Score = 32.3 bits (74), Expect = 0.26
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+V +V A+ GL GD I +IN +I
Sbjct: 284 ALVSQVNPNSPAELAGL-KAGDIITQINDTKIT 315
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 34.5 bits (80), Expect = 0.041
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
V++ +V+ G A R GL GD IL I ++
Sbjct: 258 VLIHKVILGSPAHRAGL-RPGDVILAIGEQMVQ 289
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes}
PDB: 2kjk_A 3i1e_A
Length = 100
Score = 32.7 bits (75), Expect = 0.043
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 4 IRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEI 42
++ D V V V A +LH GD I EI+G
Sbjct: 2 VKVTYDGVYVMSVKDDVPAA--DVLHAGDLITEIDGNAF 38
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 34.2 bits (79), Expect = 0.057
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+ V+ A+ GL E D I+ ING +
Sbjct: 256 AYIIEVIPDTPAEAGGL-KENDVIISINGQSVV 287
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 34.1 bits (79), Expect = 0.059
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIRG 44
++V V G A G+ D I+ ++
Sbjct: 246 IVVNEVSPDGPAANAGI-QVNDLIISVDNKPAIS 278
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 31.5 bits (71), Expect = 0.071
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 266 SFQKGDILHVISQD-DPNWWQA 286
GDI+ + + + NWW+
Sbjct: 36 RLNPGDIVELTKAEAEHNWWEG 57
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 33.0 bits (76), Expect = 0.12
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 10/43 (23%)
Query: 11 VIVGRVVKGGLADRTGL----------LHEGDEILEINGIEIR 43
V+V G A + GL L GD I +NG ++
Sbjct: 253 VLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVS 295
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 33.2 bits (75), Expect = 0.16
Identities = 19/145 (13%), Positives = 38/145 (26%), Gaps = 21/145 (14%)
Query: 1 GATIRNEGDAVIVGRVVKGGL--------ADRTGLLHEGDEILEINGIEIRGKSIHIVCD 52
+ +GD +V + G G+ G I +I+G + S +
Sbjct: 740 ACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGS--NIYR 797
Query: 53 ILVGLTGQEMTMGREAWKTSHAFRHTEHTHFDVDEILTYEEVSLYYPRSNEKRPIVL--I 110
+L G + D+ + ++ + Y E +
Sbjct: 798 VLSEKAGTSARIR---------LSGKGGDKRDLMIDILDDDRFIRYRSWVEANRRYVHER 848
Query: 111 GPPNIGRHELRQRLMEDSDRFAAAI 135
IG + M + F
Sbjct: 849 SKGTIGYIHIPDMGMMGLNEFYRLF 873
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 30.7 bits (70), Expect = 0.17
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
+ VV+ A G + GD+I+ +G +
Sbjct: 3 IYASSVVENMPAK--GKIEVGDKIISADGKNYQ 33
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 30.3 bits (68), Expect = 0.19
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 10/63 (15%)
Query: 241 GMHVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVI-SQDDPNWWQAYREGEEDHT--LA 297
G A + + E ++L GD+L V + E +
Sbjct: 11 GFQYRALYPFRRERP-----EDL--ELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMP 63
Query: 298 GTS 300
G +
Sbjct: 64 GLN 66
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 31.6 bits (71), Expect = 0.24
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 243 HVIAHFDYDPEDDMYIPCKELGMSFQKGDILHVISQDDPNWWQAYREGEE 292
H +A +++ +L S Q GD++ + W++ Y +
Sbjct: 19 HGVAIYNFQGSGA-----PQL--SLQIGDVVRIQETCGD-WYRGYLIKHK 60
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 32.2 bits (74), Expect = 0.24
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
V V+ G + + G+ GD I +NG +
Sbjct: 265 AFVSEVLPGSGSAKAGVK-AGDIITSLNGKPLN 296
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein;
2.40A {Bombyx mori} SCOP: d.151.1.1
Length = 245
Score = 31.8 bits (71), Expect = 0.27
Identities = 11/80 (13%), Positives = 20/80 (25%), Gaps = 2/80 (2%)
Query: 181 GLRTKLDKLQAGIPTLNFDIYALTETWLTDEINDPELGFSKFNVFRSDRTKQTSHKSDGG 240
+ +L T I + E ++ GF VF+S + K+
Sbjct: 29 RKKLATAELAIEAATRKAAIALIQEPYVGG--AKSMKGFRGVRVFQSTAQGDGTVKAAIA 86
Query: 241 GMHVIAHFDYDPEDDMYIPC 260
P+
Sbjct: 87 VFDHDLDVIQYPQLTTNNIV 106
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 31.8 bits (73), Expect = 0.31
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 8 GDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSI 47
G V+V GG A++ G GD I+ ++G ++G S+
Sbjct: 98 GKDVVVLTPAPGGPAEKAGAR-AGDVIVTVDGTAVKGMSL 136
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 31.5 bits (70), Expect = 0.46
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 2 ATIRNEGDAVIVGRVVKGGLADRTGLLHEGDEILEINGIEIRGKSI 47
A + + V V A GL GD+I+ I+ ++ +S+
Sbjct: 489 AKYKASPQGLDVLNVYHDESAYHAGL-SAGDKIIAIDHLQATEQSV 533
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 29.1 bits (65), Expect = 0.68
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
V L + GL +GD + +NG+++
Sbjct: 39 YRVSPGKDPVLFESIGL-QDGDMAVALNGLDLT 70
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein,
THDP-dependent enzymes, thiamine pyrophosphate, lyase;
HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Length = 570
Score = 30.6 bits (70), Expect = 0.76
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAA--IPHTSRPMKDGEVDGQDYHFI 155
++P+V+ G + L + + + F + +P T+ VD F+
Sbjct: 229 QKPVVIAGH-EVISFGLEKTVTQ----FVSETKLPITTLNFGKSAVDESLPSFL 277
>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal
hydrolase; HET: PE4; 1.76A {Thermobifida alba}
Length = 306
Score = 30.1 bits (67), Expect = 0.99
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 8/74 (10%)
Query: 96 LYYPRSNEKRPIVLIGPPNIGRHELRQRLMED--SDRFAAAIPHTSRPMKDGEVDGQDYH 153
+YYPR N + I P G L E S F T+ + Q
Sbjct: 87 IYYPRENNTYGAIAISPGYTGTQSSIAWLGERIASHGFVVIAIDTNTTL------DQPDS 140
Query: 154 FITRAQFELDILAR 167
+ LD +
Sbjct: 141 RARQLNAALDYMLT 154
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 30.2 bits (69), Expect = 1.1
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAA--IPHTSRPMKDGEVDGQDYHFI 155
+ VL+G + + ++ FA A + ++ H+I
Sbjct: 210 DKVAVLVGS-KLRAAGAEEAAVK----FADALGGAVATMAAAKSFFPEENPHYI 258
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 30.2 bits (69), Expect = 1.3
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 104 KRPIVLIGPPNIGRHELRQRLMEDSDRFAAA--IPHTSRPMKDGEVDGQDYHFI 155
K P++L RH+++ + P PM G +D Q +
Sbjct: 212 KNPVILADA-CCSRHDVKAETKK----LIDLTQFPAFVTPMGKGSIDEQHPRYG 260
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 27.1 bits (60), Expect = 2.5
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 13 VGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
V L + GL +GD + +NG+++
Sbjct: 23 VSPGKDPVLFESIGL-QDGDMAVALNGLDLT 52
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 27.6 bits (62), Expect = 3.3
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 11 VIVGRVVKGGLADRTGLLHEGDEILEINGIEIR 43
VIV V A+ G L + D I +++ EI
Sbjct: 59 VIVRSVQSNMPAN--GHLEKYDVITKVDDKEIA 89
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 27.4 bits (60), Expect = 5.9
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 291 EEDHTLAGTSLDAIRTVVNAGKICVL--NLHPQSLKILRSSDLKPFVIFVAPPPFELLKQ 348
+++ + + D G +L + P L + I + E +++
Sbjct: 63 QQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIER 122
Query: 349 KRIRRGD 355
R GD
Sbjct: 123 CLDRGGD 129
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM
glucanase, carbohydrate metabolism, cellulose
degradation, glycosidase; HET: BTB; 2.10A {Clostridium
cellulovorans}
Length = 515
Score = 27.9 bits (61), Expect = 6.0
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 284 WQAYREGEEDHTLAGTSLDAIRTVVN----AGKICVLNLH 319
W + ++T+ T + + + N ++NLH
Sbjct: 68 WDGHMGAAPEYTIDQTWMKRVEEIANYAFDNDMYVIINLH 107
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 27.9 bits (61), Expect = 6.7
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 257 YIPCKELGMSFQKGDILHVISQDDPNWW 284
+ P + + GDI+ V +
Sbjct: 451 HQPRTADEIPMEPGDIIGVAGNHWDGYS 478
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 26.7 bits (60), Expect = 9.4
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 9/37 (24%)
Query: 102 NEKRPIVLIGPP-----NIGRHELRQRL-ME--DSDR 130
EKR I L+GP IGR L Q+L ME DSD+
Sbjct: 2 AEKRNIFLVGPMGAGKSTIGRQ-LAQQLNMEFYDSDQ 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.418
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,076,111
Number of extensions: 390987
Number of successful extensions: 1608
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1364
Number of HSP's successfully gapped: 457
Length of query: 366
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,049,298
Effective search space: 1097359758
Effective search space used: 1097359758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)