BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16960
(69 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
GS A+ S L++GD+ILEVNG++F N H+E +
Sbjct: 56 GSEAEGSGLKVGDQILEVNGRSFL-NILHDEAV 87
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 11/55 (20%)
Query: 14 YCIIIAETPDGKVKLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67
Y + +AE DG PA++S + IGDEILE+NG+T K N H+ I I +
Sbjct: 52 YVLRLAE--DG-------PAERSGKMRIGDEILEINGETTK-NMKHSRAIELIKN 96
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl
Receptor Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl
Receptor Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 13 GYCIIIAETPDG---KVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
G+ + I + DG +V GSPA+K+ L GD +L +NG F D H +V+ +
Sbjct: 16 GFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRING-VFVDKEEHAQVVELVR 71
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
G AD L++GDEI+ +NG + +C H EVI I
Sbjct: 120 GGQADSVGLQVGDEIVRINGYSI-SSCTHEEVINLIR 155
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
GSPA+K+ L GD ++EVNG+ + H +V++ I
Sbjct: 37 GSPAEKAGLLAGDRLVEVNGENVEKE-THQQVVSRIR 72
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
GSPA+K+ L GD ++EVNG+ + H +V++ I
Sbjct: 37 GSPAEKAGLLAGDRLVEVNGENVEKE-THQQVVSRIR 72
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus
Pdz Domain-Containing Protein 1
Length = 114
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 13 GYCIIIAETPDG---KVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
G+ + I + DG +V GSPA+K+ L GD +L +NG F D H +V+ +
Sbjct: 28 GFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRING-VFVDKEEHAQVVELVR 83
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
GSPA+K+ L GD ++EVNG+ + H +V++ I
Sbjct: 36 GSPAEKAGLLAGDRLVEVNGENVEKE-THQQVVSRIR 71
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
GSPA+K+ L GD ++EVNG+ + H +V++ I
Sbjct: 37 GSPAEKAGLLAGDRLVEVNGENVEKE-THQQVVSRIR 72
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 13 GYCIIIAETPDG---KVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
G+ + I + DG +V GSPA+K+ L GD +L +NG F D H +V+ +
Sbjct: 17 GFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRING-VFVDKEEHAQVVELVR 72
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz
Binding Motif
Length = 90
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GSPA +S L D ++EVNG+ + H EV+ I
Sbjct: 38 GSPAARSGLRAQDRLIEVNGQNV-EGLRHAEVVASI 72
>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 114
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 30 GSPADK-SDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67
GSPAD+ + L++GD IL VNG++ N H +++ I D
Sbjct: 53 GSPADRCAKLKVGDRILAVNGQSII-NMPHADIVKLIKD 90
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
GS + + LEIGD+I+EVNG F N +H E +
Sbjct: 37 GSLSAEVGLEIGDQIVEVNGVDF-SNLDHKEAV 68
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67
G+ A L GD+ILEVNG + N +H E IT +
Sbjct: 54 GAAARDGRLWAGDQILEVNGVDLR-NSSHEEAITALRQ 90
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
GS + + LEIGD+I+EVNG F N +H E +
Sbjct: 51 GSLSAEVGLEIGDQIVEVNGVDF-SNLDHKEAV 82
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 30 GSPADK-SDLEIGDEILEVNGKTFKDNCNHNEVIT 63
G PAD+ L +GD IL VNG +D H E +T
Sbjct: 45 GQPADRCGGLHVGDAILAVNGVNLRDT-KHKEAVT 78
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 30 GSPADK-SDLEIGDEILEVNGKTFKDNCNHNEVIT 63
G PAD+ L +GD IL VNG +D H E +T
Sbjct: 63 GQPADRCGGLHVGDAILAVNGVNLRDT-KHKEAVT 96
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 30 GSPADK-SDLEIGDEILEVNGKTFKDNCNHNEVIT 63
G PAD+ L +GD IL VNG +D H E +T
Sbjct: 38 GQPADRCGGLHVGDAILAVNGVNLRDT-KHKEAVT 71
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GSPA+ + L GD ++EVNG + H++V+ I
Sbjct: 35 GSPAEAAALRAGDRLVEVNGVNVEGE-THHQVVQRI 69
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 32 PADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
PA ++ + +GD++LEVNG + H+E + +
Sbjct: 58 PAARAGVRVGDKLLEVNGVALQ-GAEHHEAVEALR 91
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GS A+K L +GD+IL VN K+ H E + +
Sbjct: 45 GSLAEKEGLRVGDQILRVNDKSL-ARVTHAEAVKAL 79
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human
Scrib1
Length = 97
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEV 61
PA ++ + +GD++LEVNG + +H V
Sbjct: 45 GPAARAGVRVGDKLLEVNGVALQGAEHHEAV 75
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 28 LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
L G AD++ + GD ILEVNG + H +V+ I
Sbjct: 51 LPGGAADRAGVRKGDRILEVNGVNV-EGATHKQVVDLIR 88
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 28 LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
L G AD++ + GD ILEVNG + H +V+ I
Sbjct: 51 LPGGAADRAGVRKGDRILEVNGVNV-EGATHKQVVDLIR 88
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
Length = 101
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 28 LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
L G AD++ + GD ILEVNG + H +V+ I
Sbjct: 51 LPGGAADRAGVRKGDRILEVNGVNV-EGATHKQVVDLIR 88
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 30 GSPADKSDLEIGDEILEVNG 49
G PA+ + L+IGD+I++VNG
Sbjct: 63 GGPAEIAGLQIGDKIMQVNG 82
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 30 GSPADKSDLEIGDEILEVNG 49
G PA+ + L+IGD+I++VNG
Sbjct: 63 GGPAEIAGLQIGDKIMQVNG 82
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 13 GYCIIIAETPDG---KVKLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEV 61
G+ II E +G L G PAD S +L GD+IL VNG + N +H +
Sbjct: 28 GFNIIGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR-NASHEQA 79
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 13 GYCIIIAETPDG---KVKLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEV 61
G+ I+ E +G L G PAD S +L GD+IL VNG + N +H +
Sbjct: 20 GFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR-NASHEQA 71
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 13 GYCIIIAETPDG---KVKLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEV 61
G+ I+ E +G L G PAD S +L GD+IL VNG + N +H +
Sbjct: 25 GFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR-NASHEQA 76
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 30 GSPADKSDLEIGDEILEVNG 49
G PA+ + L+IGD+I++VNG
Sbjct: 63 GGPAEIAGLQIGDKIMQVNG 82
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 30 GSPADKSDLEIGDEILEVNG 49
G PA+ + L+IGD+I++VNG
Sbjct: 55 GGPAEIAGLQIGDKIMQVNG 74
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 30 GSPADKSDLEIGDEILEVNG 49
G PA+ + L+IGD+I++VNG
Sbjct: 64 GGPAEIAGLQIGDKIMQVNG 83
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell
Leukemia Virus Type I) Binding Protein 3
Length = 139
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 30 GSPADKSDLEIGDEILEVNG 49
G PA+ + L+IGD+I++VNG
Sbjct: 74 GGPAEIAGLQIGDKIMQVNG 93
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1)
Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 30 GSPADKSDLEIGDEILEVNG 49
G PA+ + L+IGD+I++VNG
Sbjct: 53 GGPAEIAGLQIGDKIMQVNG 72
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 13 GYCIIIAETPDG---KVKLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEV 61
G+ I+ E +G L G PAD S +L GD+IL VNG + N +H +
Sbjct: 28 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR-NASHEQA 79
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 28 LYGSPADKS-DLEIGDEILEVNGKTF 52
++G PA+KS L IGD+I+ +NG +
Sbjct: 37 MHGGPAEKSGKLNIGDQIMSINGTSL 62
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid
Beta A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 28 LYGSPADKSD-LEIGDEILEVNGKTF 52
++G PA+KS L IGD+I+ +NG +
Sbjct: 41 MHGGPAEKSGKLNIGDQIMSINGTSL 66
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 28 LYGSPADKS-DLEIGDEILEVNGKTF 52
++G PA+KS L IGD+I+ +NG +
Sbjct: 37 MHGGPAEKSGKLNIGDQIMSINGTSL 62
>pdb|2EAQ|A Chain A, Crystal Structure Of Pdz Domain Of Kiaa0858 (Lim),
Ms0793 From Homo Sapiens
Length = 90
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDN 55
GSPA+ S L++ DEI+ +N F N
Sbjct: 38 GSPAEFSQLQVDDEIIAINNTKFSYN 63
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 28 LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
+ GSPAD L GD+IL VN K +H +V+ I
Sbjct: 31 MRGSPADFVGLRAGDQILAVNEINVK-KASHEDVVKLI 67
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 13 GYCIIIAETPDG---KVKLYGSPADKS-DLEIGDEILEVNG 49
G+ I+ E +G L G PAD S +L+ GD+IL VNG
Sbjct: 17 GFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNG 57
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 28 LYGSPADKSDLEIGDEILEVNGKTFKD 54
L SPA K LE GD+IL VN F +
Sbjct: 39 LEDSPAAKEGLEEGDQILRVNNVDFTN 65
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
SPA K LE GD+IL VN F + V+ + P
Sbjct: 62 SPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLP 99
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho
Guanine Nucleotide Exchange Factor 11
Length = 93
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
G A K+ ++ GD I++VNG T N +H EV+ I +
Sbjct: 39 GGAAMKAGVKEGDRIIKVNG-TMVTNSSHLEVVKLIKSGA 77
>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|C Chain C, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|D Chain D, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|E Chain E, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
pdb|2V90|F Chain F, Crystal Structure Of The 3rd Pdz Domain Of Intestine-
And Kidney-enriched Pdz Domain Ikepp (pdzd3)
Length = 96
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
G PA K+ ++ GD ++ V G++ + H E ++ I
Sbjct: 40 GLPAKKAGMQAGDRLVAVAGESV-EGLGHEETVSRIQ 75
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
SPA K LE GD+IL VN F + V+ + P
Sbjct: 37 SPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLP 74
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
Length = 194
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
SPA K LE GD+IL VN F + V+ + P
Sbjct: 35 SPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLP 72
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule
Complex With Connexin-45 Peptide
Length = 468
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 28 LYGSPADKSDLEIGDEILEVNGKTFKD 54
L SPA K LE GD+IL VN F +
Sbjct: 31 LEDSPAAKEGLEEGDQILRVNNVDFTN 57
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEV 61
GS A+++ L +GD+I EVNG + + + V
Sbjct: 46 GSSAERAGLCVGDKITEVNGLSLESTTMGSAV 77
>pdb|3DJA|A Chain A, Crystal Structure Of Cpaf Solved With Mad
pdb|3DJA|B Chain B, Crystal Structure Of Cpaf Solved With Mad
Length = 579
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 18 IAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKD 54
+ ++ DG+ S++ +GDE+LEV+G +D
Sbjct: 92 VQKSSDGRFYFVDIXTFSSEIRVGDELLEVDGAPVQD 128
>pdb|1E6V|C Chain C, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
pdb|1E6V|F Chain F, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
Length = 258
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67
G+PAD+ DL+ I ++G ++++ +V+ IH+
Sbjct: 206 GAPADEDDLKERTTIYRIDGTPYREDEELLQVVQRIHE 243
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
SPA+ S L D I+EVNG + H +V++ I
Sbjct: 39 SPAEASGLRAQDRIVEVNGVCMEGK-QHGDVVSAIR 73
>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain
Containing Protein 1
Length = 102
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 13 GYCIIIAETPDGKVKLY-----GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
GY + P+ K ++ GSPA+ + L+ D ++ VNGK+ + +H+ V+ I
Sbjct: 18 GYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSV-EALDHDGVVEMIR 75
>pdb|3DPN|A Chain A, Crystal Structure Of Cpaf S499a Mutant
pdb|3DPN|B Chain B, Crystal Structure Of Cpaf S499a Mutant
Length = 583
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 18 IAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKD 54
+ ++ DG+ S++ +GDE+LEV+G +D
Sbjct: 90 VQKSSDGRFYFVDIMTFSSEIRVGDELLEVDGAPVQD 126
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The
Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor
Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The
Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor
Protein Pdzk1
Length = 89
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 13 GYCIIIAETPDGKVKLY-----GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
GY + P+ K ++ GSPA+ + L+ D ++ VNGK+ + +H+ V+ I
Sbjct: 14 GYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSV-EALDHDGVVEMIR 71
>pdb|3DOR|A Chain A, Crystal Structure Of Mature Cpaf
pdb|3DOR|B Chain B, Crystal Structure Of Mature Cpaf
pdb|3DPM|A Chain A, Structure Of Mature Cpaf Complexed With Lactacystin
pdb|3DPM|B Chain B, Structure Of Mature Cpaf Complexed With Lactacystin
Length = 583
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 18 IAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKD 54
+ ++ DG+ S++ +GDE+LEV+G +D
Sbjct: 90 VQKSSDGRFYFVDIMTFSSEIRVGDELLEVDGAPVQD 126
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 13 GYCIIIAETPDGKVKLY-----GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
GY + P+ K ++ GSPA+ + L+ D ++ VNGK+ + +H+ V+ I
Sbjct: 17 GYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSV-EALDHDGVVEMIR 74
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 13 GYCIIIAETPDG---KVKLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNE 60
G+ I+ E +G L G PAD S +L GD+IL VNG + N +H +
Sbjct: 321 GFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR-NASHEQ 371
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
SPA+ S L D I+EVNG + H +V++ I
Sbjct: 44 SPAEASGLRAQDRIVEVNGVCMEGK-QHGDVVSAIR 78
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
SPA+ S L D I+EVNG + H +V++ I
Sbjct: 44 SPAEASGLRAQDRIVEVNGVCMEGK-QHGDVVSAIR 78
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 28 LYGSPADK-SDLEIGDEILEVNGKTF 52
L GSPA L +GD ILEVNG +
Sbjct: 44 LPGSPAAADGRLSLGDRILEVNGSSL 69
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 12 KGYCIIIAETPDGKVKLY-------GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITH 64
KG+ I + K+ LY G + +GD+I+E+NG++ +D H I
Sbjct: 22 KGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRD-MTHARAIEL 80
Query: 65 I 65
I
Sbjct: 81 I 81
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFK 53
GS A ++ LE GD++LE NG +
Sbjct: 52 GSIAHQAGLEYGDQLLEFNGINLR 75
>pdb|2VYU|A Chain A, Crystal Structure Of Choline Binding Protein F From
Streptococcus Pneumoniae In The Presence Of A
Peptidoglycan Analogue (Tetrasaccharide-Pentapeptide)
Length = 338
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 23 DGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
DGK +G D ++ +G + LE+ G ++DN N+ + I
Sbjct: 57 DGKTYYFG---DIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEI 96
>pdb|2V04|A Chain A, Crystal Structure Of Choline Binding Protein F From
Streptococcus Pneumoniae
pdb|2V05|A Chain A, Crystal Structure Of Choline Binding Protein F From
Streptococcus Pneumoniae. Crystal Form Ii.
pdb|2X8M|A Chain A, Crystal Structure Of Cbpf In Complex With Ipratropium By
Soaking
pdb|2X8O|A Chain A, Crystal Structure Of Cbpf In Complex With Atropine By
Soaking
pdb|2X8P|A Chain A, Crystal Structure Of Cbpf In Complex With Atropine By
Co- Crystallization
Length = 311
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 23 DGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
DGK +G D ++ +G + LE+ G ++DN N+ + I
Sbjct: 30 DGKTYYFG---DIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEI 69
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEV 61
G + + ++ G+E+L +NGK+ K +H+ +
Sbjct: 53 GLASQEGTIQKGNEVLSINGKSLKGTTHHDAL 84
>pdb|3KZD|A Chain A, Crystal Structure Of Free T-Cell Lymphoma Invasion And
Metas Pdz Domain
pdb|3KZE|A Chain A, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|B Chain B, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|C Chain C, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
Length = 94
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 10 DLKGYCIIIAETPDGKVKLYGSP------ADKSDLEIGDEILEVNGKTFKDNCNHNEVIT 63
D G+ + E DG +LY + A K L+ GDEILE+N + D N + +
Sbjct: 20 DTYGFSLSSVE-EDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRA-ADALNSSMLKD 77
Query: 64 HIHDPS 69
+ PS
Sbjct: 78 FLSQPS 83
>pdb|3NA2|A Chain A, Crystal Structure Of Protein Of Unknown Function From
Mine Drainage Metagenome Leptospirillum Rubarum
pdb|3NA2|B Chain B, Crystal Structure Of Protein Of Unknown Function From
Mine Drainage Metagenome Leptospirillum Rubarum
pdb|3NA2|C Chain C, Crystal Structure Of Protein Of Unknown Function From
Mine Drainage Metagenome Leptospirillum Rubarum
pdb|3NA2|D Chain D, Crystal Structure Of Protein Of Unknown Function From
Mine Drainage Metagenome Leptospirillum Rubarum
Length = 172
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 13 GYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
G C+ +P G +LYG A K +EI L + + + +C V T + D S
Sbjct: 42 GXCLFSVRSPGGVAELYGGEARK--VEITGTSLTIEREDWHLHCKLETVETVVFDLS 96
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 102
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 25 KVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
++K G+ A L+ GD+IL VNG+ K N H + +
Sbjct: 45 RIKENGAAALDGRLQEGDKILSVNGQDLK-NLLHQDAV 81
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 101
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 25 KVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
++K G+ A L+ GD+IL VNG+ K N H + +
Sbjct: 43 RIKENGAAALDGRLQEGDKILSVNGQDLK-NLLHQDAV 79
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 25 KVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
++K G+ A L+ GD+IL VNG+ K N H + +
Sbjct: 53 RIKENGAAALDGRLQEGDKILSVNGQDLK-NLLHQDAV 89
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
With Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
With Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 19/56 (33%)
Query: 16 IIIAETPDGKVKLY---------------GSPADKSDLEIGDEILEVNGKTFKDNC 56
+I+ + DGK+ L SPA L GD++L++NG +NC
Sbjct: 8 VILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQING----ENC 59
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
SP+ + ++ GD I++VNG+ D+ E +
Sbjct: 46 SPSQRGGIQDGDIIVKVNGRPLVDSSELQEAV 77
>pdb|2D8I|A Chain A, Solution Structure Of The Pdz Domain Of T-Cell Lymphoma
Invasion And Metastasis 1 Varian
Length = 114
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 33 ADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
A K L+ GDEILE+N + D N + + + PS
Sbjct: 57 ASKKGLKAGDEILEINNRA-ADALNSSMLKDFLSQPS 92
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 31 SPADKSDLEIGDEILEVNGKTFKDNC 56
SPA L GD++L++NG +NC
Sbjct: 38 SPASLVGLRFGDQVLQING----ENC 59
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
SPA+ S L D I+EVNG + H +V++ I
Sbjct: 44 SPAEASGLRAQDRIVEVNGVCMEGK-QHGDVVSAI 77
>pdb|1MRO|C Chain C, Methyl-Coenzyme M Reductase
pdb|1MRO|F Chain F, Methyl-Coenzyme M Reductase
Length = 247
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 18 IAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
I + D V L G P D+ L I V+G+ ++D+ E++ IH
Sbjct: 190 IGDELDEPVDL-GEPLDEETLMEKTTIYRVDGEAYRDDVEAVEIMQRIH 237
>pdb|3POT|C Chain C, Structural Analysis Of A Ni(Iii)-Methyl Species In
Methyl-Coenzyme M Reductase From Methanothermobacter
Marburgensis
pdb|3POT|F Chain F, Structural Analysis Of A Ni(Iii)-Methyl Species In
Methyl-Coenzyme M Reductase From Methanothermobacter
Marburgensis
Length = 249
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 18 IAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
I + D V L G P D+ L I V+G+ ++D+ E++ IH
Sbjct: 191 IGDELDEPVDL-GEPLDEETLMEKTTIYRVDGEAYRDDVEAVEIMQRIH 238
>pdb|1HBM|C Chain C, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBM|F Chain F, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBN|C Chain C, Methyl-Coenzyme M Reductase
pdb|1HBN|F Chain F, Methyl-Coenzyme M Reductase
pdb|1HBO|C Chain C, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBO|F Chain F, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBU|C Chain C, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
pdb|1HBU|F Chain F, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
pdb|3M1V|C Chain C, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M1V|F Chain F, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2R|C Chain C, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2R|F Chain F, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2U|C Chain C, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2U|F Chain F, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2V|C Chain C, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M2V|F Chain F, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M30|C Chain C, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M30|F Chain F, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M32|C Chain C, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
pdb|3M32|F Chain F, Structural Insight Into Methyl-Coenzyme M Reductase
Chemistry Using Coenzyme B Analogues
Length = 248
Score = 25.4 bits (54), Expect = 7.6, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 18 IAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
I + D V L G P D+ L I V+G+ ++D+ E++ IH
Sbjct: 190 IGDELDEPVDL-GEPLDEETLMEKTTIYRVDGEAYRDDVEAVEIMQRIH 237
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 30 GSPADKSDLEIGDEILEVNGKT 51
GSPA ++ L GD I +NG++
Sbjct: 44 GSPAQEAGLRAGDLITHINGES 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,474,439
Number of Sequences: 62578
Number of extensions: 92033
Number of successful extensions: 322
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 91
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)