Query psy16960
Match_columns 69
No_of_seqs 165 out of 1038
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 18:07:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r6j_A Syntenin 1; PDZ, membra 99.5 3E-14 1E-18 84.5 6.2 60 4-67 6-69 (82)
2 3r68_A Na(+)/H(+) exchange reg 99.5 1.1E-13 3.6E-18 81.1 6.0 61 6-67 9-75 (95)
3 2f5y_A Regulator of G-protein 99.4 3.2E-13 1.1E-17 79.1 6.3 62 5-67 6-70 (91)
4 2he4_A Na(+)/H(+) exchange reg 99.4 9.3E-13 3.2E-17 76.7 8.0 61 6-67 8-74 (90)
5 1g9o_A NHE-RF; PDZ domain, com 99.4 1.1E-12 3.8E-17 76.4 8.2 62 6-68 7-74 (91)
6 2vsv_A Rhophilin-2; scaffold p 99.4 6.6E-13 2.3E-17 81.6 7.2 62 5-67 26-90 (109)
7 3qik_A Phosphatidylinositol 3, 99.4 4.4E-13 1.5E-17 82.8 6.1 59 8-67 23-85 (101)
8 2jxo_A Ezrin-radixin-moesin-bi 99.4 1.3E-12 4.6E-17 77.1 7.6 61 6-67 13-79 (98)
9 2v90_A PDZ domain-containing p 99.4 9.4E-13 3.2E-17 77.5 6.7 62 5-67 6-76 (96)
10 3kzd_A TIAM-1, T-lymphoma inva 99.4 9.7E-13 3.3E-17 79.8 5.8 64 3-67 7-81 (94)
11 1kwa_A Hcask/LIN-2 protein; PD 99.3 1.7E-12 5.8E-17 76.1 5.8 61 6-67 5-72 (88)
12 2kv8_A RGS12, regulator of G-p 99.3 5.3E-13 1.8E-17 76.7 3.5 61 6-67 6-69 (83)
13 3o46_A Maguk P55 subfamily mem 99.3 4.4E-12 1.5E-16 74.3 7.3 61 6-67 8-75 (93)
14 2dls_A PDZ-rhogef, RHO guanine 99.3 5E-12 1.7E-16 74.4 7.1 59 6-66 12-74 (93)
15 2koj_A Partitioning defective 99.3 5.8E-12 2E-16 75.7 7.4 61 6-67 15-86 (111)
16 2fe5_A Presynaptic protein SAP 99.3 6.8E-12 2.3E-16 73.2 7.5 63 5-68 6-81 (94)
17 2i04_A Membrane-associated gua 99.3 7.6E-12 2.6E-16 72.0 7.5 56 11-67 10-72 (85)
18 2pa1_A PDZ and LIM domain prot 99.3 4.9E-12 1.7E-16 73.2 6.8 58 10-68 10-73 (87)
19 2dkr_A LIN-7 homolog B; LIN-7B 99.3 3.9E-12 1.3E-16 74.1 6.2 61 6-67 9-77 (93)
20 2kjd_A Sodium/hydrogen exchang 99.3 8.6E-12 3E-16 76.6 7.9 62 5-67 12-79 (128)
21 2vsp_A PDZ domain-containing p 99.3 1.4E-12 4.9E-17 76.2 4.1 62 5-67 6-73 (91)
22 1n7e_A AMPA receptor interacti 99.3 9E-12 3.1E-16 73.5 7.6 59 8-67 11-77 (97)
23 3i4w_A Disks large homolog 4; 99.3 6.9E-12 2.4E-16 74.3 7.0 61 6-67 15-82 (104)
24 1q3o_A Shank1; PDZ, GKAP, pept 99.3 6.6E-12 2.3E-16 75.5 6.8 56 11-67 18-91 (109)
25 3bpu_A Membrane-associated gua 99.3 5.1E-12 1.7E-16 73.3 6.0 61 5-67 6-71 (88)
26 2q9v_A Membrane-associated gua 99.3 1.1E-11 3.7E-16 72.0 7.2 60 7-67 7-74 (90)
27 2opg_A Multiple PDZ domain pro 99.3 1.6E-11 5.5E-16 72.2 7.9 57 11-68 14-78 (98)
28 2d90_A PDZ domain containing p 99.3 3.4E-12 1.2E-16 75.9 4.9 61 6-67 10-76 (102)
29 1ufx_A KIAA1526 protein; PDZ d 99.3 5.3E-12 1.8E-16 76.2 5.6 61 6-67 10-79 (103)
30 3qe1_A Sorting nexin-27, G pro 99.3 1.2E-11 4.3E-16 73.8 7.2 62 5-67 9-89 (107)
31 2uzc_A Human pdlim5, PDZ and L 99.3 1E-11 3.5E-16 71.8 6.5 57 10-67 11-73 (88)
32 1whd_A RGS3, regulator of G-pr 99.3 2.6E-12 8.7E-17 76.6 3.7 59 7-67 20-82 (100)
33 2q3g_A PDZ and LIM domain prot 99.3 1.3E-11 4.5E-16 71.6 6.7 57 10-67 11-73 (89)
34 1va8_A Maguk P55 subfamily mem 99.3 1.6E-11 5.5E-16 74.6 7.3 61 6-67 29-95 (113)
35 2jik_A Synaptojanin-2 binding 99.3 2.5E-11 8.7E-16 71.8 7.9 56 11-67 17-84 (101)
36 1d5g_A Human phosphatase HPTP1 99.3 2.5E-11 8.4E-16 71.2 7.8 56 11-67 15-80 (96)
37 3ngh_A PDZ domain-containing p 99.3 6.1E-12 2.1E-16 75.1 5.2 60 6-66 5-71 (106)
38 2d92_A INAD-like protein; PDZ 99.3 7.6E-12 2.6E-16 75.4 5.6 61 6-67 19-91 (108)
39 1uep_A Membrane associated gua 99.3 9.4E-12 3.2E-16 74.3 6.0 61 6-67 13-81 (103)
40 2awx_A Synapse associated prot 99.3 2.2E-11 7.5E-16 72.8 7.5 61 6-67 7-80 (105)
41 3nfk_A Tyrosine-protein phosph 99.3 1.6E-11 5.4E-16 73.4 6.7 62 5-67 20-91 (107)
42 2ego_A General receptor for ph 99.3 2.4E-11 8.3E-16 71.6 7.5 55 12-67 16-83 (96)
43 3l4f_D SH3 and multiple ankyri 99.3 8.2E-12 2.8E-16 78.3 5.7 56 11-67 38-111 (132)
44 1m5z_A GRIP, AMPA receptor int 99.3 1.9E-11 6.5E-16 71.1 6.9 55 12-67 19-78 (91)
45 2pkt_A PDZ and LIM domain prot 99.3 1.8E-11 6.3E-16 71.3 6.8 57 10-67 11-73 (91)
46 2djt_A Unnamed protein product 99.3 2E-11 7E-16 72.6 6.9 56 11-67 21-85 (104)
47 2ejy_A 55 kDa erythrocyte memb 99.3 1.3E-11 4.5E-16 74.4 6.1 56 11-67 23-83 (97)
48 2eei_A PDZ domain-containing p 99.3 7E-12 2.4E-16 74.8 4.8 60 6-66 12-77 (106)
49 3khf_A Microtubule-associated 99.3 2E-11 6.9E-16 72.0 6.7 60 6-66 6-79 (99)
50 1rgw_A ZAsp protein; PDZ, cyph 99.2 1.4E-11 4.7E-16 70.7 5.7 57 10-67 9-71 (85)
51 1um1_A KIAA1849 protein, RSGI 99.2 2.5E-11 8.5E-16 73.0 7.0 61 6-67 12-83 (110)
52 3tsv_A Tight junction protein 99.2 2.7E-11 9.2E-16 75.2 7.2 59 7-66 34-96 (124)
53 1wi4_A Synip, syntaxin binding 99.2 1.2E-11 4.2E-16 75.1 5.5 61 6-67 19-88 (109)
54 2kom_A Partitioning defective 99.2 3E-11 1E-15 74.4 7.3 56 11-67 40-105 (121)
55 3cbz_A Dishevelled-2; PDZ doma 99.2 2E-11 6.8E-16 73.8 6.3 56 11-67 16-80 (108)
56 2qkv_A Inactivation-NO-after-p 99.2 1.9E-11 6.5E-16 72.3 6.0 56 11-67 19-78 (96)
57 1v6b_A Harmonin isoform A1; st 99.2 1.4E-11 4.7E-16 75.6 5.5 60 6-66 22-89 (118)
58 2dlu_A INAD-like protein; PDZ 99.2 1.4E-11 4.6E-16 74.2 5.3 59 7-66 20-84 (111)
59 2jil_A GRIP1 protein, glutamat 99.2 2.6E-11 8.8E-16 71.2 6.4 60 7-67 8-79 (97)
60 2w4f_A Protein LAP4; structura 99.2 3.5E-11 1.2E-15 70.5 6.9 55 11-66 13-79 (97)
61 4amh_A Disks large homolog 1; 99.2 4.1E-11 1.4E-15 72.2 7.4 57 11-68 12-80 (106)
62 1i16_A Interleukin 16, LCF; cy 99.2 5.7E-12 1.9E-16 78.5 3.5 61 7-68 34-105 (130)
63 1wf8_A Neurabin-I; PDZ domain, 99.2 1.5E-11 5.2E-16 73.7 5.3 61 6-67 13-87 (107)
64 2qg1_A Multiple PDZ domain pro 99.2 2.3E-11 8E-16 70.8 5.9 56 11-67 15-76 (92)
65 1wfv_A Membrane associated gua 99.2 1.2E-11 4.2E-16 73.2 4.6 55 11-66 21-82 (103)
66 1ujd_A KIAA0559 protein; PDZ d 99.2 2.3E-11 8E-16 74.3 5.9 56 12-68 30-97 (117)
67 2byg_A Channel associated prot 99.2 5.6E-11 1.9E-15 72.9 7.6 57 11-68 34-102 (117)
68 1vae_A Rhophilin 2, rhophilin, 99.2 9.8E-12 3.4E-16 76.2 4.2 61 5-66 18-81 (111)
69 2fne_A Multiple PDZ domain pro 99.2 1.8E-11 6.3E-16 75.2 5.4 56 11-67 35-100 (117)
70 2e7k_A Maguk P55 subfamily mem 99.2 4.8E-11 1.6E-15 70.2 7.0 55 11-67 17-75 (91)
71 2iwn_A Multiple PDZ domain pro 99.2 6.9E-11 2.4E-15 68.8 7.6 56 11-67 14-80 (97)
72 2jre_A C60-1 PDZ domain peptid 99.2 2.4E-11 8.1E-16 72.7 5.7 55 11-66 24-90 (108)
73 1tp5_A Presynaptic density pro 99.2 5.4E-11 1.8E-15 72.3 7.4 56 11-67 24-85 (119)
74 3b76_A E3 ubiquitin-protein li 99.2 4E-11 1.4E-15 74.1 6.9 57 11-68 35-101 (118)
75 1uhp_A Hypothetical protein KI 99.2 3.6E-11 1.2E-15 72.1 6.5 61 6-67 12-88 (107)
76 1ueq_A Membrane associated gua 99.2 5.1E-11 1.8E-15 73.3 7.2 56 11-67 29-91 (123)
77 4e34_A Golgi-associated PDZ an 99.2 3E-11 1E-15 69.7 5.8 60 7-67 7-75 (87)
78 2i1n_A Discs, large homolog 3; 99.2 4.7E-11 1.6E-15 70.7 6.8 56 11-67 14-81 (102)
79 2iwo_A Multiple PDZ domain pro 99.2 2.5E-11 8.7E-16 74.9 5.7 60 7-67 29-100 (120)
80 2eaq_A LIM domain only protein 99.2 4.3E-11 1.5E-15 69.4 6.4 53 13-66 18-73 (90)
81 2vwr_A Ligand of NUMB protein 99.2 4.3E-11 1.5E-15 70.1 6.4 55 11-66 15-75 (95)
82 2eeg_A PDZ and LIM domain prot 99.2 2.8E-11 9.4E-16 71.1 5.5 56 11-67 17-78 (94)
83 1qav_A Alpha-1 syntrophin (res 99.2 3.5E-11 1.2E-15 69.9 5.9 57 11-68 15-78 (90)
84 1uez_A KIAA1526 protein; PDZ d 99.2 4.4E-11 1.5E-15 70.9 6.4 55 11-66 20-80 (101)
85 1ihj_A INAD; intermolecular di 99.2 3E-11 1E-15 71.0 5.6 56 11-67 16-84 (98)
86 1y7n_A Amyloid beta A4 precurs 99.2 3.7E-11 1.3E-15 71.1 5.8 52 11-66 23-76 (90)
87 3soe_A Membrane-associated gua 99.2 4.8E-11 1.6E-15 74.4 6.4 62 5-67 15-78 (113)
88 3axa_A Afadin, nectin-3, prote 99.2 6.7E-11 2.3E-15 70.6 6.8 59 8-67 17-85 (106)
89 2kpk_A Membrane-associated gua 99.2 5.4E-11 1.9E-15 73.8 6.5 56 11-67 28-90 (129)
90 3sfj_A TAX1-binding protein 3; 99.2 5.1E-11 1.7E-15 70.7 6.2 40 27-67 52-91 (104)
91 1wi2_A Riken cDNA 2700099C19; 99.2 5.2E-11 1.8E-15 71.2 6.2 54 12-66 27-86 (104)
92 2z17_A Pleckstrin homology SEC 99.2 4.4E-11 1.5E-15 71.3 5.8 61 6-67 19-94 (104)
93 1wif_A RSGI RUH-020, riken cDN 99.2 1.7E-11 5.7E-16 77.3 4.0 60 7-67 32-96 (126)
94 2r4h_A Membrane-associated gua 99.2 8.1E-11 2.8E-15 71.4 7.0 56 11-67 34-96 (112)
95 2eno_A Synaptojanin-2-binding 99.2 9.5E-11 3.3E-15 71.6 7.2 59 7-66 22-93 (120)
96 3e17_A Tight junction protein 99.2 5.3E-11 1.8E-15 69.6 5.8 53 12-68 13-69 (88)
97 2dm8_A INAD-like protein; PDZ 99.2 3.4E-11 1.2E-15 72.8 5.0 56 11-67 27-90 (116)
98 3hpk_A Protein interacting wit 99.2 7.6E-11 2.6E-15 72.4 6.5 56 11-67 30-92 (125)
99 1qau_A Neuronal nitric oxide s 99.2 8.5E-11 2.9E-15 70.6 6.6 56 11-67 12-73 (112)
100 2edz_A PDZ domain-containing p 99.2 1.9E-11 6.5E-16 74.1 3.4 61 6-67 17-84 (114)
101 1x6d_A Interleukin-16; PDZ dom 99.2 2.7E-11 9.2E-16 73.8 4.1 56 11-67 26-89 (119)
102 1wf7_A Enigma homologue protei 99.2 3.1E-11 1.1E-15 71.9 4.3 56 10-66 13-74 (103)
103 1vb7_A PDZ and LIM domain 2; P 99.2 3E-11 1E-15 70.9 4.2 56 11-67 15-76 (94)
104 2la8_A Inactivation-NO-after-p 99.2 4.1E-11 1.4E-15 72.6 4.9 56 11-67 13-72 (106)
105 1uew_A Membrane associated gua 99.2 4.5E-11 1.5E-15 72.5 5.0 56 11-67 21-90 (114)
106 2dc2_A GOPC, golgi associated 99.1 4.6E-11 1.6E-15 71.5 4.9 57 11-68 20-83 (103)
107 1x5q_A LAP4 protein; PDZ domai 99.1 1.5E-10 5.1E-15 69.5 7.1 56 11-67 25-92 (110)
108 1um7_A Synapse-associated prot 99.1 2.4E-11 8.4E-16 72.9 3.6 61 6-67 19-86 (113)
109 1ujv_A Membrane associated gua 99.1 9.1E-11 3.1E-15 69.7 6.0 61 6-67 14-76 (96)
110 1uit_A Human discs large 5 pro 99.1 1.6E-10 5.3E-15 70.2 7.2 59 7-66 24-87 (117)
111 1wha_A KIAA0147 protein, scrib 99.1 4.1E-11 1.4E-15 71.6 4.4 56 11-67 17-85 (105)
112 2fcf_A Multiple PDZ domain pro 99.1 1.5E-10 5E-15 68.6 6.7 40 27-67 46-86 (103)
113 1v5q_A GRIP1 homolog, glutamat 99.1 1.2E-10 3.9E-15 71.6 6.3 55 11-66 26-91 (122)
114 2g5m_B Neurabin-2; spinophilin 99.1 4.1E-11 1.4E-15 72.3 3.8 56 11-67 14-82 (113)
115 1nf3_C PAR-6B; semi-CRIB motif 99.1 8.6E-11 2.9E-15 72.8 5.3 55 12-67 42-112 (128)
116 2eeh_A PDZ domain-containing p 99.1 1.7E-10 5.9E-15 68.3 6.4 54 13-67 23-82 (100)
117 1wg6_A Hypothetical protein (r 99.1 3.4E-11 1.2E-15 74.8 3.4 56 11-67 36-102 (127)
118 2d8i_A T-cell lymphoma invasio 99.1 3.8E-11 1.3E-15 74.1 3.4 62 5-67 18-90 (114)
119 3egg_C Spinophilin; PP1, serin 99.1 1.4E-10 4.8E-15 75.9 6.3 56 11-67 90-158 (170)
120 1v62_A KIAA1719 protein; struc 99.1 1.7E-10 5.7E-15 70.5 6.3 60 7-67 20-89 (117)
121 2db5_A INAD-like protein; PDZ 99.1 1E-10 3.5E-15 72.1 5.3 56 11-67 36-102 (128)
122 2dmz_A INAD-like protein; PDZ 99.1 1.1E-10 3.7E-15 72.0 5.3 56 11-67 26-93 (129)
123 1wfg_A Regulating synaptic mem 99.1 1.3E-10 4.5E-15 72.6 5.7 56 11-67 47-112 (131)
124 2krg_A Na(+)/H(+) exchange reg 99.1 7E-11 2.4E-15 80.0 4.8 61 5-66 12-78 (216)
125 1v5l_A PDZ and LIM domain 3; a 99.1 9.4E-11 3.2E-15 69.9 4.7 56 11-67 14-75 (103)
126 1w9e_A Syntenin 1; cell adhesi 99.1 2.6E-10 9E-15 72.7 7.1 59 6-65 8-71 (166)
127 2ehr_A INAD-like protein; PDZ 99.1 9.3E-11 3.2E-15 71.2 4.7 56 11-67 26-97 (117)
128 2yt7_A Amyloid beta A4 precurs 99.1 1.7E-10 5.8E-15 68.7 5.7 55 12-67 21-84 (101)
129 2cs5_A Tyrosine-protein phosph 99.1 8.7E-11 3E-15 71.5 4.4 55 12-67 27-89 (119)
130 2yuy_A RHO GTPase activating p 99.1 3.1E-11 1.1E-15 74.5 2.2 40 27-67 68-107 (126)
131 2gzv_A PRKCA-binding protein; 99.1 2.8E-10 9.4E-15 69.6 6.4 55 12-67 36-97 (114)
132 3r0h_A INAD, inactivation-NO-a 99.1 2.3E-10 7.7E-15 74.3 6.3 56 12-68 125-184 (206)
133 3gge_A PDZ domain-containing p 99.1 3E-10 1E-14 69.3 6.4 56 11-67 15-75 (95)
134 1n7t_A 99-MER peptide of densi 99.1 2.5E-10 8.5E-15 67.8 5.9 57 8-66 17-87 (103)
135 2o2t_A Multiple PDZ domain pro 99.1 1.5E-10 5E-15 70.2 5.0 61 6-67 24-97 (117)
136 2daz_A INAD-like protein; PDZ 99.1 1.8E-10 6.2E-15 70.7 5.5 56 11-67 35-98 (124)
137 1q7x_A PDZ2B domain of PTP-BAS 99.1 1.1E-10 3.9E-15 69.8 4.5 56 11-67 19-89 (108)
138 1mfg_A ERB-B2 interacting prot 99.1 4.5E-10 1.5E-14 65.7 6.9 56 9-66 10-79 (95)
139 2iwq_A Multiple PDZ domain pro 99.1 2.4E-10 8.1E-15 70.8 6.0 40 27-67 66-106 (123)
140 3gsl_A Disks large homolog 4; 99.1 2.9E-10 1E-14 72.5 6.4 56 11-67 15-82 (196)
141 2h2b_A Tight junction protein 99.1 3.4E-10 1.2E-14 67.5 6.3 53 11-65 18-82 (107)
142 1uju_A Scribble; PDZ domain, c 99.1 9.6E-11 3.3E-15 70.6 3.7 61 6-67 13-91 (111)
143 3k1r_A Harmonin; protein-prote 99.1 2.7E-10 9.3E-15 74.6 6.0 56 11-67 95-156 (192)
144 1x5n_A Harmonin; PDZ domain, u 99.1 3.2E-10 1.1E-14 68.4 5.9 55 11-66 26-86 (114)
145 2vz5_A TAX1-binding protein 3; 99.1 4.1E-10 1.4E-14 71.1 6.4 40 27-67 71-110 (139)
146 1uf1_A KIAA1526 protein; PDZ d 99.1 5.5E-10 1.9E-14 68.8 6.8 55 12-67 32-92 (128)
147 1wh1_A KIAA1095 protein; PDZ d 99.0 2.6E-10 8.8E-15 70.2 5.2 54 11-67 31-93 (124)
148 1b8q_A Protein (neuronal nitri 99.0 1.3E-10 4.4E-15 71.5 3.7 56 11-67 19-80 (127)
149 3tsz_A Tight junction protein 99.0 6.5E-10 2.2E-14 80.4 7.4 61 6-67 13-77 (391)
150 2rcz_A Tight junction protein 99.0 4.9E-10 1.7E-14 63.1 5.3 40 27-67 28-68 (81)
151 3cyy_A Tight junction protein 99.0 6.9E-10 2.4E-14 64.2 5.7 40 27-67 30-70 (92)
152 2qt5_A Glutamate receptor-inte 99.0 8.8E-10 3E-14 71.6 6.8 56 11-67 18-80 (200)
153 3gsl_A Disks large homolog 4; 99.0 1.6E-09 5.3E-14 69.1 7.6 57 11-68 110-178 (196)
154 3id1_A Regulator of sigma E pr 99.0 3.6E-10 1.2E-14 67.2 4.0 36 27-65 9-44 (95)
155 3r0h_A INAD, inactivation-NO-a 99.0 1E-09 3.5E-14 71.2 6.4 56 11-67 28-94 (206)
156 2qbw_A PDZ-fibronectin fusion 99.0 9.3E-10 3.2E-14 71.0 5.8 54 12-67 2-69 (195)
157 2lob_A Golgi-associated PDZ an 98.5 6.5E-11 2.2E-15 72.5 0.0 56 11-67 38-100 (112)
158 3shw_A Tight junction protein 99.0 1.5E-09 5.2E-14 80.7 7.3 61 6-67 5-69 (468)
159 3i18_A LMO2051 protein; alpha- 98.9 6.9E-10 2.4E-14 66.1 4.2 36 27-66 14-49 (100)
160 1p1d_A PDZ45, glutamate recept 98.9 9.2E-10 3.1E-14 71.6 5.1 56 11-67 17-83 (196)
161 2yub_A LIMK-2, LIM domain kina 98.9 6.5E-10 2.2E-14 68.7 4.0 39 28-67 52-92 (118)
162 1z87_A Alpha-1-syntrophin; pro 98.9 6.9E-10 2.4E-14 77.3 4.6 56 11-67 88-150 (263)
163 2csj_A TJP2 protein; PDZ domai 98.9 7.4E-10 2.5E-14 67.3 4.2 55 11-67 25-91 (117)
164 2zpm_A Regulator of sigma E pr 98.9 8.7E-10 3E-14 63.9 4.0 37 27-66 11-47 (91)
165 2edv_A FERM and PDZ domain-con 98.9 1.8E-10 6.2E-15 68.1 0.9 52 12-66 21-75 (96)
166 1fc6_A Photosystem II D1 prote 98.9 3E-09 1E-13 76.0 7.0 56 11-67 84-145 (388)
167 2edp_A Fragment, shroom family 98.9 2.1E-09 7.2E-14 63.8 5.0 54 12-67 21-81 (100)
168 3suz_A Amyloid beta A4 precurs 98.8 1.3E-09 4.3E-14 78.4 2.7 56 11-67 215-279 (388)
169 2xkx_A Disks large homolog 4; 98.8 8.8E-09 3E-13 78.8 7.4 61 6-67 63-136 (721)
170 2pzd_A Serine protease HTRA2; 98.8 3.5E-09 1.2E-13 63.7 3.8 37 27-66 42-78 (113)
171 2i6v_A General secretion pathw 98.8 4.3E-09 1.5E-13 61.1 3.8 34 30-63 29-62 (87)
172 2kjp_A Uncharacterized protein 98.8 1.7E-09 5.8E-14 64.1 1.9 37 27-67 8-44 (91)
173 2p3w_A Probable serine proteas 98.8 6.1E-09 2.1E-13 62.6 3.9 36 27-65 42-77 (112)
174 2i4s_A General secretion pathw 98.7 9E-09 3.1E-13 61.7 4.1 34 30-63 47-80 (105)
175 2l97_A HTRA, putative serine p 98.7 5.9E-09 2E-13 65.2 3.3 35 27-65 64-98 (134)
176 1p1d_A PDZ45, glutamate recept 98.7 1.8E-08 6.1E-13 65.5 5.0 55 11-66 118-181 (196)
177 2qt5_A Glutamate receptor-inte 98.7 2.5E-08 8.4E-13 64.7 5.1 40 27-67 142-182 (200)
178 3k50_A Putative S41 protease; 98.7 2.4E-08 8.2E-13 72.7 5.3 46 11-56 73-126 (403)
179 2kl1_A YLBL protein; structure 98.7 7E-09 2.4E-13 61.3 1.7 36 27-66 12-47 (94)
180 3rle_A Golgi reassembly-stacki 98.6 2.5E-08 8.7E-13 66.0 4.1 31 27-57 23-54 (209)
181 1w9e_A Syntenin 1; cell adhesi 98.6 8.7E-08 3E-12 60.9 5.4 51 12-66 100-152 (166)
182 3stj_A Protease DEGQ; serine p 98.6 2.9E-08 9.9E-13 70.4 3.4 37 27-66 270-306 (345)
183 2xkx_A Disks large homolog 4; 98.6 1.6E-07 5.4E-12 71.9 7.3 56 11-67 317-378 (721)
184 1lcy_A HTRA2 serine protease; 98.6 4.8E-08 1.7E-12 68.3 4.1 37 27-66 263-299 (325)
185 2hga_A Conserved protein MTH13 98.6 5.9E-08 2E-12 60.5 4.0 36 27-66 32-67 (125)
186 1y8t_A Hypothetical protein RV 98.6 3.8E-08 1.3E-12 68.4 3.4 36 27-65 249-284 (324)
187 1te0_A Protease DEGS; two doma 98.5 3.1E-08 1.1E-12 68.9 2.9 37 27-66 251-287 (318)
188 4fgm_A Aminopeptidase N family 98.5 1.9E-07 6.7E-12 70.6 5.6 50 13-63 486-538 (597)
189 3suz_A Amyloid beta A4 precurs 98.4 2.2E-08 7.5E-13 72.0 0.0 40 27-67 322-361 (388)
190 4a8c_A Periplasmic PH-dependen 98.4 1.4E-07 4.9E-12 68.4 3.9 38 27-67 370-407 (436)
191 3pv2_A DEGQ; trypsin fold, PDZ 98.4 1.5E-07 5E-12 68.9 3.9 36 27-65 289-324 (451)
192 4a8c_A Periplasmic PH-dependen 98.4 1.7E-07 5.7E-12 68.1 3.9 36 27-65 270-305 (436)
193 3qo6_A Protease DO-like 1, chl 98.4 1.6E-07 5.6E-12 66.1 3.1 37 27-66 258-305 (348)
194 3num_A Serine protease HTRA1; 98.4 4.3E-08 1.5E-12 68.5 0.0 36 27-65 261-296 (332)
195 3pv2_A DEGQ; trypsin fold, PDZ 98.4 2.5E-07 8.6E-12 67.7 4.0 38 27-67 393-430 (451)
196 3rle_A Golgi reassembly-stacki 98.3 2.3E-07 7.8E-12 61.3 2.9 37 27-64 119-156 (209)
197 1k32_A Tricorn protease; prote 98.3 1E-06 3.5E-11 67.7 5.7 53 11-67 736-801 (1045)
198 1ky9_A Protease DO, DEGP, HTRA 98.2 3E-07 1E-11 67.2 0.6 37 27-66 293-329 (448)
199 1ky9_A Protease DO, DEGP, HTRA 98.1 4.9E-07 1.7E-11 66.1 0.0 37 27-66 390-426 (448)
200 4fln_A Protease DO-like 2, chl 97.2 0.00029 9.9E-09 53.2 3.7 29 27-56 284-312 (539)
201 4fln_A Protease DO-like 2, chl 97.1 0.00028 9.6E-09 53.2 3.2 38 27-67 422-459 (539)
202 3dor_A Protein CT_858, CPAF; m 89.9 0.097 3.3E-06 40.1 1.1 41 15-55 87-127 (583)
203 1yfb_A Transition state regula 82.5 1 3.5E-05 24.5 2.5 31 15-45 13-43 (59)
204 1a62_A RHO; transcription term 81.6 1 3.5E-05 28.0 2.6 36 11-46 59-99 (130)
205 2l66_A SSO7C4, transcriptional 70.2 3.1 0.0001 21.6 2.1 26 20-45 8-33 (53)
206 2w1t_A Spovt, stage V sporulat 55.6 7.8 0.00027 25.4 2.5 33 14-46 4-36 (178)
207 2j3t_D Trafficking protein par 51.9 7.5 0.00026 26.3 1.9 23 33-55 52-74 (219)
208 3m7a_A Uncharacterized protein 47.2 34 0.0011 21.3 4.4 18 28-45 122-139 (140)
209 3cam_A Cold-shock domain famil 45.6 20 0.00068 19.4 2.8 35 11-45 12-49 (67)
210 3pjy_A Hypothetical signal pep 44.4 14 0.00048 22.9 2.3 18 28-45 108-125 (136)
211 2glw_A PHS018, 92AA long hypot 43.4 17 0.00057 21.1 2.3 26 22-47 58-83 (92)
212 3l0o_A Transcription terminati 39.9 18 0.00062 26.8 2.5 35 11-45 66-105 (427)
213 2g8o_A TS, tsase, thymidylate 37.5 14 0.00049 25.4 1.6 36 31-67 187-222 (264)
214 3qj7_A TS, tsase, thymidylate 36.3 14 0.00048 25.6 1.4 35 32-67 189-223 (264)
215 4dq1_A TS, tsase, thymidylate 35.1 19 0.00066 25.6 2.0 36 31-67 245-280 (321)
216 1c9o_A CSPB, cold-shock protei 35.1 24 0.00082 18.9 2.0 34 11-45 12-48 (66)
217 3i2z_B RNA chaperone, negative 34.9 56 0.0019 17.6 3.6 36 10-45 15-53 (71)
218 1bkp_A Thymidylate synthase A; 32.9 16 0.00053 25.5 1.2 36 31-67 201-236 (278)
219 1j3k_C Bifunctional dihydrofol 32.6 19 0.00065 25.7 1.6 36 31-67 251-286 (328)
220 3a0j_A Cold shock protein; OB- 32.2 29 0.00099 19.0 2.1 34 11-45 12-48 (73)
221 3kgb_A Thymidylate synthase 1/ 31.8 20 0.00068 25.2 1.6 36 31-67 215-250 (294)
222 1pqh_A Aspartate 1-decarboxyla 31.0 51 0.0017 21.0 3.3 19 29-48 88-106 (143)
223 3ice_A Transcription terminati 30.9 28 0.00094 25.7 2.3 36 11-46 62-102 (422)
224 1eik_A RNA polymerase subunit 30.8 24 0.0008 20.2 1.5 20 29-48 41-61 (77)
225 3oug_A Aspartate 1-decarboxyla 29.9 42 0.0015 20.6 2.7 18 30-48 75-92 (114)
226 3pei_A Cytosol aminopeptidase; 29.9 14 0.00047 27.7 0.5 28 28-56 304-331 (486)
227 2cw5_A Bacterial fluorinating 29.7 73 0.0025 21.7 4.1 19 27-45 235-253 (255)
228 1gyt_A Cytosol aminopeptidase; 29.6 12 0.00042 28.0 0.2 27 28-55 323-349 (503)
229 2zbv_A Uncharacterized conserv 29.5 74 0.0025 21.7 4.1 18 28-45 243-260 (263)
230 1wid_A DNA-binding protein RAV 29.5 30 0.001 20.8 1.9 15 32-46 86-100 (130)
231 2kcm_A Cold shock domain famil 29.4 32 0.0011 19.1 1.9 34 11-45 11-48 (74)
232 2q6k_A Chlorinase; complex wit 28.7 78 0.0027 21.8 4.2 19 28-46 251-269 (283)
233 3ed7_A Tsase, TS, thymidylate 28.3 23 0.00077 25.0 1.4 36 31-67 218-253 (295)
234 1hw4_A TS, thymidylate synthas 28.0 25 0.00086 25.4 1.6 36 31-67 278-313 (355)
235 2aaz_A TS, tsase, thymidylate 27.9 23 0.00079 25.1 1.4 36 31-67 237-272 (317)
236 1vc3_B L-aspartate-alpha-decar 27.6 34 0.0012 20.4 1.9 18 30-48 48-65 (96)
237 3ix6_A TS, tsase, thymidylate 27.3 24 0.00081 25.4 1.4 36 31-67 283-318 (360)
238 3jru_B Probable cytosol aminop 26.6 15 0.00051 27.6 0.2 28 28-56 315-342 (490)
239 3ij3_A Cytosol aminopeptidase; 26.6 15 0.00051 27.6 0.2 28 28-56 303-330 (482)
240 1at0_A 17-hedgehog; developmen 26.2 49 0.0017 20.1 2.6 24 25-48 7-31 (145)
241 3kzw_A Cytosol aminopeptidase; 25.6 17 0.0006 27.4 0.4 28 28-56 336-363 (515)
242 1lam_A Leucine aminopeptidase; 25.4 13 0.00045 27.8 -0.3 27 28-55 303-329 (484)
243 3s52_A Putative fumarylacetoac 25.0 38 0.0013 22.1 2.0 24 26-49 189-213 (221)
244 3v8h_A TS, tsase, thymidylate 25.0 26 0.00088 25.0 1.2 36 31-67 239-274 (327)
245 2b25_A Hypothetical protein; s 24.9 41 0.0014 22.4 2.2 21 30-50 1-22 (336)
246 2hc9_A Leucine aminopeptidase 24.8 17 0.00058 27.3 0.2 27 28-55 305-331 (491)
247 2wr8_A Putative uncharacterize 24.8 38 0.0013 23.2 2.0 18 28-45 238-255 (259)
248 1f28_A Thymidylate synthase; b 24.4 19 0.00063 25.3 0.3 36 31-67 220-255 (297)
249 3plx_B Aspartate 1-decarboxyla 23.6 62 0.0021 19.4 2.6 18 30-48 47-64 (102)
250 1gut_A Mopii, molybdate bindin 23.6 61 0.0021 16.5 2.3 19 29-47 40-58 (68)
251 3h8g_F Cytosol aminopeptidase; 23.5 15 0.00051 27.6 -0.3 26 28-54 320-345 (497)
252 2f4n_A Hypothetical protein MJ 23.5 75 0.0026 22.0 3.3 20 28-47 245-264 (273)
253 3kr4_A M17 leucyl aminopeptida 23.3 21 0.00071 27.2 0.4 28 28-56 347-374 (528)
254 3uwl_A TS, tsase, thymidylate 23.3 35 0.0012 24.0 1.6 36 31-67 238-273 (315)
255 4efd_A Aminopeptidase; structu 23.2 18 0.00061 27.5 0.1 26 28-54 343-368 (522)
256 1uhe_A Aspartate 1-decarboxyla 23.0 46 0.0016 19.9 1.9 18 30-48 46-63 (97)
257 1tis_A Thymidylate synthase; t 22.7 17 0.00057 25.5 -0.2 36 31-67 197-232 (286)
258 1b5e_A Protein (deoxycytidylat 22.5 23 0.00078 24.0 0.5 35 32-67 195-231 (246)
259 1hmj_A RPB5, protein (subunit 22.3 52 0.0018 18.8 2.0 20 29-48 39-59 (78)
260 1g6p_A Cold shock protein TMCS 22.0 61 0.0021 17.2 2.1 34 11-45 11-47 (66)
261 2xvs_A Tetratricopeptide repea 21.9 76 0.0026 20.5 2.9 16 31-46 113-128 (166)
262 2ki8_A Tungsten formylmethanof 21.8 63 0.0022 19.6 2.4 18 31-48 60-77 (146)
263 4dbf_A 2-hydroxyhepta-2,4-dien 21.8 62 0.0021 22.3 2.6 24 26-49 253-277 (288)
264 1fr3_A MOP, molybdate/tungstat 21.5 71 0.0024 15.9 2.3 17 31-47 41-57 (67)
265 1yel_A AT1G16640; CESG, protei 21.4 48 0.0016 18.8 1.7 13 33-45 73-85 (104)
266 3nrr_A Dihydrofolate reductase 20.9 41 0.0014 25.3 1.6 36 31-67 438-473 (515)
267 4ayb_H DNA-directed RNA polyme 20.8 48 0.0016 19.0 1.6 17 29-45 47-64 (84)
268 3rr6_A Putative uncharacterize 20.3 59 0.002 22.1 2.2 24 26-49 228-252 (265)
269 2k5n_A Putative cold-shock pro 20.1 88 0.003 17.1 2.6 31 11-45 13-47 (74)
270 3irm_A Bifunctional dihydrofol 20.0 44 0.0015 25.2 1.6 36 31-67 444-479 (521)
No 1
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.51 E-value=3e-14 Score=84.47 Aligned_cols=60 Identities=18% Similarity=0.230 Sum_probs=51.1
Q ss_pred CCceEec--cCCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 4 SPSHMID--LKGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 4 ~~~~~~~--~~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+|.+ ..+|||.+. ++.| +.+|+||+++||++||+|++|||+++.+++ +++++++|+.
T Consensus 6 r~v~l~k~~~g~~Gf~i~---~g~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~-~~evv~llr~ 69 (82)
T 1r6j_A 6 RTITMHKDSTGHVGFIFK---NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLK-DSQIADILST 69 (82)
T ss_dssp EEEEEECCTTSCCCEEEE---TTEEEEECTTSHHHHHTCCSSEEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred EEEEEEECCCCCeEEEEE---CCEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCC-HHHHHHHHhc
Confidence 3578877 346999984 3455 578999999999999999999999999999 9999999973
No 2
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=99.46 E-value=1.1e-13 Score=81.14 Aligned_cols=61 Identities=28% Similarity=0.475 Sum_probs=51.1
Q ss_pred ceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
|++.+ ..||||.+....+ +.+ +.+||||+++||++||+|++|||+++.+++ ++++..+|+.
T Consensus 9 v~l~~~~~~~G~~l~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 75 (95)
T 3r68_A 9 VVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALD-HDGVVEMIRK 75 (95)
T ss_dssp EEEECBTTBCSCEEEEC--CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred EEEecCCCcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 66766 7899999977655 333 458999999999999999999999999998 8899998876
No 3
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=99.43 E-value=3.2e-13 Score=79.12 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=50.4
Q ss_pred CceEec-cCCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 5 PSHMID-LKGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 5 ~~~~~~-~~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.+++.+ ..|+||.+.....-.| +.+||||+++||++||+|++|||+++.+|+ ++++.++++.
T Consensus 6 ~v~l~~~~~g~G~~l~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~-~~~~~~~l~~ 70 (91)
T 2f5y_A 6 QITIPRGKDGFGFTICCDSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWK-CVELAHEIRS 70 (91)
T ss_dssp EEEEECBTTBTSEEEECSSSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred EEEEEeCCCCccEEEecCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 356666 7889998865433223 568999999999999999999999999998 8899888864
No 4
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.42 E-value=9.3e-13 Score=76.70 Aligned_cols=61 Identities=31% Similarity=0.493 Sum_probs=51.1
Q ss_pred ceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
|.+.+ ..|+||.+....+ +.+ +.+||||+++||++||+|++|||+++.+++ ++++.++++.
T Consensus 8 v~l~k~~~g~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 74 (90)
T 2he4_A 8 CHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLR-HAEVVASIKA 74 (90)
T ss_dssp EEEECBTTBCCEEEEECSSSSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSC-HHHHHHHHTT
T ss_pred EEEEECCCCccEEEEccCCCCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 45555 7899999987654 333 468999999999999999999999999998 8899998865
No 5
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.42 E-value=1.1e-12 Score=76.36 Aligned_cols=62 Identities=29% Similarity=0.509 Sum_probs=51.7
Q ss_pred ceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960 6 SHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~ 68 (69)
|.+.+ ..|+||.+....+ +.+ +.+||||+++||++||+|++|||+++.+++ ++++.++++..
T Consensus 7 v~l~r~~~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~l~~~ 74 (91)
T 1g9o_A 7 CCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKET-HQQVVSRIRAA 74 (91)
T ss_dssp EEEECBTTBCCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHHTC
T ss_pred EEEEeCCCcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence 55666 7899999977653 332 468999999999999999999999999998 88999988753
No 6
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=99.41 E-value=6.6e-13 Score=81.65 Aligned_cols=62 Identities=13% Similarity=0.005 Sum_probs=50.2
Q ss_pred CceEec-cCCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 5 PSHMID-LKGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 5 ~~~~~~-~~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.|++.+ ..++||.+.....-.| +.+||||++|||++||+|++|||+++.+|+ ++++.++|+.
T Consensus 26 ~v~l~k~~~~~G~~l~~~~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~-~~dv~~~i~~ 90 (109)
T 2vsv_A 26 SIRFTAEEGDLGFTLRGNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLT-LSEVMKLLKS 90 (109)
T ss_dssp EEEECCGGGCCCEEEESSSSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred EEEEEeCCCceeEEEeCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 477777 5888988854332223 568999999999999999999999999997 8899988864
No 7
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=99.41 E-value=4.4e-13 Score=82.78 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=46.6
Q ss_pred Eec-cCCeEEEEEEcCCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 8 MID-LKGYCIIIAETPDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 8 ~~~-~~g~~i~l~~~~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+++ ..||||.+.......+ +.+||||++|||++||+|++|||+++...+ .+++.+.|++
T Consensus 23 l~~~~~g~G~~l~~~~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s-~~dv~~~i~~ 85 (101)
T 3qik_A 23 ILPQEEDYGFDIEEKNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRP-FSEVESILNQ 85 (101)
T ss_dssp ECCCSSSSSEEEEEETTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSC-HHHHHHHHHH
T ss_pred EEeCCCcccEEEEccCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCC-HHHHHHHHHH
Confidence 444 7899999987544433 568999999999999999999999986444 5588877753
No 8
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.40 E-value=1.3e-12 Score=77.06 Aligned_cols=61 Identities=30% Similarity=0.438 Sum_probs=50.4
Q ss_pred ceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
|.+.+ ..|+||.+....+ +.+ +.++|||+++||++||+|++|||+++.+++ ++++.++|+.
T Consensus 13 ~~l~~~~~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 79 (98)
T 2jxo_A 13 CTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ-HGDVVSAIRA 79 (98)
T ss_dssp EEEECTTTCCCEEEECCCSSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred EEEEeCCCcccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 56666 7899999976553 333 468999999999999999999999999977 7799888864
No 9
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.39 E-value=9.4e-13 Score=77.46 Aligned_cols=62 Identities=24% Similarity=0.474 Sum_probs=51.0
Q ss_pred CceEec-cCCeEEEEEEcCC-----CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 5 PSHMID-LKGYCIIIAETPD-----GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 5 ~~~~~~-~~g~~i~l~~~~~-----~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.|++.+ ..|+||.+..... +.+ +.++|||+++||++||+|++|||+++.+++ ++++.++++.
T Consensus 6 ~v~l~k~~~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 76 (96)
T 2v90_A 6 CLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLG-HEETVSRIQG 76 (96)
T ss_dssp EEEEECBTTBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred EEEEEeCCCcccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 366777 7899999977432 122 468999999999999999999999999987 8899988865
No 10
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=99.37 E-value=9.7e-13 Score=79.82 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=50.8
Q ss_pred CCCceEeccC----CeEEEEEEcC-CC--eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 3 TSPSHMIDLK----GYCIIIAETP-DG--KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 3 ~~~~~~~~~~----g~~i~l~~~~-~~--~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+-.|+|.+-+ +|||.+.... ++ .+ +.+||||++|||++||+|++|||+++.+++ ++++.+.+++
T Consensus 7 ~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~-~~~l~~~l~~ 81 (94)
T 3kzd_A 7 THSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALN-SSMLKDFLSQ 81 (94)
T ss_dssp EEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCC-HHHHHHHHHS
T ss_pred eeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHhC
Confidence 4567888743 7899887643 21 22 468999999999999999999999999998 8899988865
No 11
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.35 E-value=1.7e-12 Score=76.08 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=49.6
Q ss_pred ceEec--cCCeEEEEEEcCCCeE----EecCChHhh-cCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID--LKGYCIIIAETPDGKV----KLYGSPADK-SDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~--~~g~~i~l~~~~~~~i----v~~gspA~~-aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+++.+ ..++|+.+....++.+ +.+||||++ +||++||+|++|||+++.+++ ++++.++|+.
T Consensus 5 V~l~K~~~~~lG~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~-~~~~~~~l~~ 72 (88)
T 1kwa_A 5 VQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQT-VEQLQKMLRE 72 (88)
T ss_dssp EEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSC-HHHHHHHHHH
T ss_pred EEEEeCCCCceeEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence 56665 4789999976433332 468999999 889999999999999999888 8899998864
No 12
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=99.35 E-value=5.3e-13 Score=76.75 Aligned_cols=61 Identities=30% Similarity=0.438 Sum_probs=47.5
Q ss_pred ceEec-cCCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+++.+ ..|+||.+.....-.| +.+||||+++||++||+|++|||+++.+|+ ++++.++++.
T Consensus 6 v~l~~~~~g~G~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 69 (83)
T 2kv8_A 6 VEVARGRAGYGFTLSGQAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKAS-HEDVVKLIGK 69 (83)
T ss_dssp EEECCCSSCCSCBCCCSSSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCC-HHHHHHHHTT
T ss_pred EEEEeCCCcccEEEEcCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 34444 6778877644322122 468999999999999999999999999998 8899988864
No 13
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=99.34 E-value=4.4e-12 Score=74.29 Aligned_cols=61 Identities=25% Similarity=0.419 Sum_probs=49.7
Q ss_pred ceEec-cCCeEEEEEEcC--CCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETP--DGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~--~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+.+ ..|+||.+.... .+.+ +.+|+||+++| |++||+|++|||+++.+++ ++++.++|+.
T Consensus 8 v~l~k~~~~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 75 (93)
T 3o46_A 8 IRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKR-PEEIIQILAQ 75 (93)
T ss_dssp EEEEESSSCCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSC-HHHHHHHHHH
T ss_pred EEEEeCCCCccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 45555 678999987762 2332 46899999999 9999999999999998888 8899998864
No 14
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.33 E-value=5e-12 Score=74.35 Aligned_cols=59 Identities=25% Similarity=0.363 Sum_probs=47.4
Q ss_pred ceEec-cCCeEEEEEEcCCCe-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 6 SHMID-LKGYCIIIAETPDGK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
|.+.+ ..|+||.+... .+. | +.+++||+++||++||+|++|||+++.+++ ..+++..++
T Consensus 12 v~l~~~~~~~G~~l~~~-~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~~~ 74 (93)
T 2dls_A 12 VIIQKDQHGFGFTVSGD-RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSS-HLEVVKLIK 74 (93)
T ss_dssp EEEECSSSSCCEEEECS-SSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSC-HHHHHHHHT
T ss_pred EEEEeCCCceeEEEeCC-CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHhhc
Confidence 44555 77899988653 333 3 568999999999999999999999999998 667877765
No 15
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.33 E-value=5.8e-12 Score=75.73 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=50.0
Q ss_pred ceEec-cCCeEEEEEEcCC------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETPD------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+.+ +.|+||.+....+ +.+ +.+||||+++| |++||+|++|||+++.+++ ++++.++++.
T Consensus 15 ~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 86 (111)
T 2koj_A 15 IQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKS-QEEVVSLLRS 86 (111)
T ss_dssp EEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSC-HHHHHHHHHH
T ss_pred EEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 34444 7899999987653 232 45899999999 9999999999999999998 8899988864
No 16
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=99.32 E-value=6.8e-12 Score=73.20 Aligned_cols=63 Identities=27% Similarity=0.435 Sum_probs=50.4
Q ss_pred CceEec-cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960 5 PSHMID-LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68 (69)
Q Consensus 5 ~~~~~~-~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~ 68 (69)
.|++.+ ..|+||.+....+ +.+ +.+||||+++| |++||+|++|||+++.+++ +.++...++.+
T Consensus 6 ~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~~~ 81 (94)
T 2fe5_A 6 EVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVR-HEEAVASLKNT 81 (94)
T ss_dssp EEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCB-HHHHHHHHHTC
T ss_pred EEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence 356655 7889999975322 222 46899999999 9999999999999999998 88998887643
No 17
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=99.32 E-value=7.6e-12 Score=71.97 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=46.7
Q ss_pred cCCeEEEEEEcCCC---eE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPDG---KV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~~---~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+. .+ +.+||||+++| |++||+|++|||+++.+++ ++++.++++.
T Consensus 10 ~~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~l~~ 72 (85)
T 2i04_A 10 SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT-HAQVVKIFQS 72 (85)
T ss_dssp TTBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred CCCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 67899988764332 22 46899999999 9999999999999999998 8899888864
No 18
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.32 E-value=4.9e-12 Score=73.19 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=47.3
Q ss_pred ccCCeEEEEEEcCC---CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960 10 DLKGYCIIIAETPD---GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68 (69)
Q Consensus 10 ~~~g~~i~l~~~~~---~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~ 68 (69)
...++||.+....+ +.+ +.++|||+++||++||+|++|||+++.+++ ++++.++++..
T Consensus 10 ~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~l~~~ 73 (87)
T 2pa1_A 10 GPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGML-HAEAQSKIRQS 73 (87)
T ss_dssp SSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCC-HHHHHHHHHTC
T ss_pred CCCccCEEEecccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence 46678888876543 222 468999999999999999999999999987 88999888653
No 19
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=3.9e-12 Score=74.15 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=49.8
Q ss_pred ceEec-cCCeEEEEEEcC---CCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETP---DGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~---~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
|++.+ ..|+||.+.... .+.+ +.++|||+++| |++||+|++|||+++.+++ ++++..+++.
T Consensus 9 v~l~k~~~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 77 (93)
T 2dkr_A 9 VELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ-HEKAVELLKA 77 (93)
T ss_dssp EEEECCTTCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSC-HHHHHHHHHH
T ss_pred EEEEeCCCCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 66766 889999997532 2232 46899999996 9999999999999999998 8899888753
No 20
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=99.32 E-value=8.6e-12 Score=76.58 Aligned_cols=62 Identities=29% Similarity=0.418 Sum_probs=51.5
Q ss_pred CceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 5 PSHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 5 ~~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.|++.+ ..||||.+....+ +.+ +.++|||+++||++||+|++|||+++.+++ ++++..+|+.
T Consensus 12 ~v~l~~~~~g~G~~l~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 79 (128)
T 2kjd_A 12 LCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ-HGDVVSAIRA 79 (128)
T ss_dssp EEEEECCSSSCCEEEEECSSSCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred EEEEecCCCcccEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 467777 7999999987653 333 468999999999999999999999999977 7798888764
No 21
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.31 E-value=1.4e-12 Score=76.17 Aligned_cols=62 Identities=29% Similarity=0.407 Sum_probs=49.8
Q ss_pred CceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 5 PSHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 5 ~~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.|++.+ .+|+||.+..... +.+ +.+||||+++||++||+|++|||+++.+++ ++++.++|+.
T Consensus 6 ~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 73 (91)
T 2vsp_A 6 LCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEP-YEKVVDRIQS 73 (91)
T ss_dssp EEEEECBTTBTSCCCBCCTTCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSC-HHHHHHHHTT
T ss_pred EEEEEeCCCcccEEEEeccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 366766 6788888865432 222 468999999999999999999999999777 8899998865
No 22
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.31 E-value=9e-12 Score=73.46 Aligned_cols=59 Identities=25% Similarity=0.389 Sum_probs=47.9
Q ss_pred EeccCC-eEEEEEEcCC---CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 8 MIDLKG-YCIIIAETPD---GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 8 ~~~~~g-~~i~l~~~~~---~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.++.+ +||.+....+ +.+ +.+|+||+++| |++||+|++|||+++.+++ ++++.++++.
T Consensus 11 l~~~~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~l~~ 77 (97)
T 1n7e_A 11 LKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKP-LSEAIHLLQM 77 (97)
T ss_dssp EECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred EEeCCCCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 444444 9999977653 332 46899999999 9999999999999999998 8899988863
No 23
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=99.31 E-value=6.9e-12 Score=74.35 Aligned_cols=61 Identities=30% Similarity=0.437 Sum_probs=49.7
Q ss_pred ceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
|++.+ ..|+||.+....+ +.+ +.+||||+++| |++||+|++|||+++.+++ ..++...++.
T Consensus 15 v~l~k~~~glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 82 (104)
T 3i4w_A 15 IVIHRGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS-HEQAAIALKN 82 (104)
T ss_dssp EEEECBTTBTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred EEEEeCCCccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 45555 6799999987665 333 46899999999 9999999999999999998 8888887764
No 24
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=99.30 E-value=6.6e-12 Score=75.52 Aligned_cols=56 Identities=23% Similarity=0.365 Sum_probs=47.3
Q ss_pred cCCeEEEEEEcCC---------------CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD---------------GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~---------------~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..||||.+....+ +.+ +.+||||+++||++||+|++|||+++.+|+ ++++..+++.
T Consensus 18 ~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~-~~~~~~~l~~ 91 (109)
T 1q3o_A 18 SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVG-HRQVVNMIRQ 91 (109)
T ss_dssp TSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred CCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 5789999987654 223 468999999999999999999999999998 8899988753
No 25
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=99.30 E-value=5.1e-12 Score=73.26 Aligned_cols=61 Identities=31% Similarity=0.564 Sum_probs=48.3
Q ss_pred CceEec-cCCeEEEEEEcCC--CeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 5 PSHMID-LKGYCIIIAETPD--GKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 5 ~~~~~~-~~g~~i~l~~~~~--~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.|++.+ ..|+||.+....+ +.+ .+++|||+ +||++||+|++|||+++.+++ ++++.+.++.
T Consensus 6 ~v~l~k~~~g~G~~~~~~~~~~~~~v~~v~~spA~-aGl~~GD~I~~vng~~v~~~~-~~~~~~~l~~ 71 (88)
T 3bpu_A 6 TVHIVKGPMGFGFTIADSPGGGGQRVKQIVDSPRS-RGLKEGDLIVEVNKKNVQALT-HNQVVDMLVE 71 (88)
T ss_dssp EEEEECBTTBSSCEEEECTTSSSEEEEECCC--CC-TTCCTTCEEEEETTEECTTSC-HHHHHHHHHT
T ss_pred EEEEEcCCCceeEEEEecCCCCcEEEEEecCChhH-hCCCCCCEEEEECCEEcCCCC-HHHHHHHHHh
Confidence 467777 7899999987643 223 24899999 999999999999999999998 8899988863
No 26
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=99.30 E-value=1.1e-11 Score=71.98 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=47.8
Q ss_pred eEec-cCCeEEEEEEcCC---CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 7 HMID-LKGYCIIIAETPD---GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 7 ~~~~-~~g~~i~l~~~~~---~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.+.+ ..|+||.+....+ +.+ +.++|||+++| |++||+|++|||+++.+++ ++++...++.
T Consensus 7 ~l~~~~~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 74 (90)
T 2q9v_A 7 FLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKS-HQLVVQLMQQ 74 (90)
T ss_dssp EEECBTTBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSC-HHHHHHHHHH
T ss_pred EEEECCCccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 3444 7889999876432 222 46899999999 9999999999999998887 8898887753
No 27
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=99.29 E-value=1.6e-11 Score=72.21 Aligned_cols=57 Identities=30% Similarity=0.406 Sum_probs=48.1
Q ss_pred cCCeEEEEEEcCC----CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960 11 LKGYCIIIAETPD----GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68 (69)
Q Consensus 11 ~~g~~i~l~~~~~----~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~ 68 (69)
..|+||.+....+ +.+ +.++|||+++| |++||+|++|||+++.+++ ++++...++..
T Consensus 14 ~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~~~ 78 (98)
T 2opg_A 14 RTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKAT-HDEAINVLRQT 78 (98)
T ss_dssp TTBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHTC
T ss_pred CCcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHhC
Confidence 6789999987653 332 46899999999 9999999999999999998 88998887643
No 28
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.29 E-value=3.4e-12 Score=75.87 Aligned_cols=61 Identities=28% Similarity=0.475 Sum_probs=50.2
Q ss_pred ceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
|++.+ ..|+||.+....+ +.+ +.+||||+++||++||+|++|||+++.++. ++++.++++.
T Consensus 10 v~l~k~~~g~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 76 (102)
T 2d90_A 10 VVIKKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALD-HDGVVEMIRK 76 (102)
T ss_dssp EEEECCSSSSSCEEEECSSSSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSC-HHHHHHHHHH
T ss_pred EEEeeCCCCccEEEEeecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 56666 7899999986542 333 358999999999999999999999999988 8898888753
No 29
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.28 E-value=5.3e-12 Score=76.15 Aligned_cols=61 Identities=26% Similarity=0.371 Sum_probs=50.8
Q ss_pred ceEec-cCCeEEEEEEcCCC-----eE--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETPDG-----KV--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~~-----~i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+.+ -.|+||.+....+. .| +.+++||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus 10 v~l~k~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~ 79 (103)
T 1ufx_A 10 VRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKE-HREAARIIAE 79 (103)
T ss_dssp EEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCB-HHHHHHHHHH
T ss_pred EEEEcCCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHH
Confidence 44555 67999999876543 23 46899999999 9999999999999999988 9999998864
No 30
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=99.28 E-value=1.2e-11 Score=73.83 Aligned_cols=62 Identities=29% Similarity=0.454 Sum_probs=49.6
Q ss_pred CceEec-cCCeEEEEEEcCC---------------Ce-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960 5 PSHMID-LKGYCIIIAETPD---------------GK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65 (69)
Q Consensus 5 ~~~~~~-~~g~~i~l~~~~~---------------~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i 65 (69)
.+.+.+ ..||||.+....+ .. | +.++|||+++||++||+|++|||+++.+++ ++++..++
T Consensus 9 ~v~l~k~~~g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l 87 (107)
T 3qe1_A 9 VVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGAT-HKQVVDLI 87 (107)
T ss_dssp EEEEECBTTBTCEEEECCSSSCCCCEESSSSEESCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHH
T ss_pred EEEEEECCCCCCEEEEcccccCCcceeccccccCCceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHH
Confidence 355555 6789999976522 11 3 468999999999999999999999999888 88999887
Q ss_pred cC
Q psy16960 66 HD 67 (69)
Q Consensus 66 ~~ 67 (69)
+.
T Consensus 88 ~~ 89 (107)
T 3qe1_A 88 RA 89 (107)
T ss_dssp HH
T ss_pred Hc
Confidence 64
No 31
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.28 E-value=1e-11 Score=71.80 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=46.5
Q ss_pred ccCCeEEEEEEcCC-C-eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 10 DLKGYCIIIAETPD-G-KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 10 ~~~g~~i~l~~~~~-~-~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
...++||.+....+ . .+ +.+||||+++||++||+|++|||+++.+|+ ++++..+++.
T Consensus 11 ~~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~~~~ 73 (88)
T 2uzc_A 11 GPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMT-HLEAQNKIKG 73 (88)
T ss_dssp SSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred CCCcccEEEECcCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 45788888875432 2 22 468999999999999999999999999998 8899888764
No 32
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.27 E-value=2.6e-12 Score=76.60 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=46.4
Q ss_pred eEec-cCCeEEEEEEcCCCe-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 7 HMID-LKGYCIIIAETPDGK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 7 ~~~~-~~g~~i~l~~~~~~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.+.+ +.|+||.+... .+. | +.+++||+++||++||+|++|||+++.+|+ ++++.++++.
T Consensus 20 ~l~~~~~g~G~~~~~~-~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~-~~~~~~~l~~ 82 (100)
T 1whd_A 20 TIRRGKDGFGFTICCD-SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWK-CVELAHEIRS 82 (100)
T ss_dssp EEECCSSSSSCBCCCS-SSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred EEECCCCeeeEEEeCC-CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 3434 57788776543 222 2 468999999999999999999999999998 8899888753
No 33
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.27 E-value=1.3e-11 Score=71.60 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=46.2
Q ss_pred ccCCeEEEEEEcCC-C-eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 10 DLKGYCIIIAETPD-G-KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 10 ~~~g~~i~l~~~~~-~-~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.-.++||.+....+ . .+ +.++|||+++||++||+|++|||+++.+++ ++++..+++.
T Consensus 11 ~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~~~~ 73 (89)
T 2q3g_A 11 GPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLT-HIEAQNKIRA 73 (89)
T ss_dssp SSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCC-HHHHHHHHHT
T ss_pred CCCcccEEEECcCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 35788888866432 2 22 468999999999999999999999999997 8899888764
No 34
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.27 E-value=1.6e-11 Score=74.60 Aligned_cols=61 Identities=28% Similarity=0.391 Sum_probs=49.4
Q ss_pred ceEec-cC-CeEEEEEEcCCCeE---EecCChHhhcCC-CCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LK-GYCIIIAETPDGKV---KLYGSPADKSDL-EIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~-g~~i~l~~~~~~~i---v~~gspA~~aGL-k~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+.+ .. |+||.+.....+.+ +.+|+||+++|| ++||+|++|||+++.+++ ++++.++|+.
T Consensus 29 v~l~k~~~~~lG~~i~~~~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~-~~~~~~~l~~ 95 (113)
T 1va8_A 29 VRIEKARDIPLGATVRNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKD-VNEVFDLLSD 95 (113)
T ss_dssp EEEEECTTCCCCEEEEECSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred EEEEeCCCCceeEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 34444 44 89998877655543 468999999999 999999999999999988 8899988853
No 35
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=99.27 E-value=2.5e-11 Score=71.82 Aligned_cols=56 Identities=27% Similarity=0.372 Sum_probs=46.9
Q ss_pred cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +.+ +.+||||+++| |++||+|++|||+++.+++ ++++..+++.
T Consensus 17 ~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 84 (101)
T 2jik_A 17 PSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLL-HQDAVDLFRN 84 (101)
T ss_dssp TTCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCC-HHHHHHHHHT
T ss_pred CCCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 5789999987432 332 46899999999 9999999999999999998 8899888764
No 36
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=99.27 E-value=2.5e-11 Score=71.17 Aligned_cols=56 Identities=18% Similarity=0.355 Sum_probs=46.7
Q ss_pred cCCeEEEEEEcCC------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..++||.+....+ +.+ +.++|||+++| |++||+|++|||+++.+++ ++++..+++.
T Consensus 15 ~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~l~~ 80 (96)
T 1d5g_A 15 DNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGAT-HKQAVETLRN 80 (96)
T ss_dssp SSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCC-HHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 6789999875322 332 46899999999 9999999999999999998 8899988864
No 37
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=99.27 E-value=6.1e-12 Score=75.09 Aligned_cols=60 Identities=28% Similarity=0.452 Sum_probs=47.5
Q ss_pred ceEec--cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 6 SHMID--LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 6 ~~~~~--~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
|++.+ ..+|||.+....+ +.+ +.+||||+++||++||+|++|||+++.+++ ++++..+++
T Consensus 5 v~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~ 71 (106)
T 3ngh_A 5 SKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEE-HAQVVELVR 71 (106)
T ss_dssp EEEECCTTCCCCCEEECCTTCCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSC-HHHHHHHHH
T ss_pred EEEEeCCCCeeCEEEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 55555 2567777665543 333 468999999999999999999999999999 899988875
No 38
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.27 E-value=7.6e-12 Score=75.42 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=49.1
Q ss_pred ceEec-cCCeEEEEEEcCC------CeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETPD------GKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~------~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+.+ ..|+||.+....+ ..+ +.+|+||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus 19 v~l~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~ 91 (108)
T 2d92_A 19 VELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTS-LAEAVEILKA 91 (108)
T ss_dssp EEEEECSSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCC-HHHHHHHHHH
T ss_pred EEEEECCCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 34444 6799999876322 122 46899999999 9999999999999999988 9999998865
No 39
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.27 E-value=9.4e-12 Score=74.32 Aligned_cols=61 Identities=25% Similarity=0.365 Sum_probs=48.8
Q ss_pred ceEec-cCCeEEEEEEcCC---Ce-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETPD---GK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~---~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+.+ ..|+||.+....+ +. | +.+++||+++| |++||+|++|||+++.+++ ++++.++|+.
T Consensus 13 v~l~~~~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~-~~~~~~~l~~ 81 (103)
T 1uep_A 13 VHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKT-HRYVIDLMHH 81 (103)
T ss_dssp CEEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSC-HHHHHHHHHH
T ss_pred EEEEeCCCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 34444 7889999876322 22 3 46899999999 9999999999999999988 8899888753
No 40
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=99.26 E-value=2.2e-11 Score=72.79 Aligned_cols=61 Identities=30% Similarity=0.456 Sum_probs=49.3
Q ss_pred ceEec-cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+.+ ..|+||.+....+ +.+ +.+||||+++| |++||+|++|||+++.+.+ ++++...++.
T Consensus 7 v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 80 (105)
T 2awx_A 7 IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVT-HEEAVTALKN 80 (105)
T ss_dssp EEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCB-HHHHHHHHHS
T ss_pred EEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 44555 6799999986532 333 46899999999 9999999999999999988 8898888764
No 41
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=99.26 E-value=1.6e-11 Score=73.39 Aligned_cols=62 Identities=24% Similarity=0.356 Sum_probs=49.6
Q ss_pred CceEec--cCCeEEEEEEcCCC---e-E--EecCChHhhcC--CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 5 PSHMID--LKGYCIIIAETPDG---K-V--KLYGSPADKSD--LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 5 ~~~~~~--~~g~~i~l~~~~~~---~-i--v~~gspA~~aG--Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.|.+.+ ..+|||.+....+. . | +.+||||+++| |++||+|++|||+++.+|+ +++++.+|+.
T Consensus 20 ~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~-~~~~~~~i~~ 91 (107)
T 3nfk_A 20 LIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT-HDQVVLFIKA 91 (107)
T ss_dssp EEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCC-HHHHHHHHHC
T ss_pred EEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 355555 36899988764332 2 2 46899999999 9999999999999999999 8899988865
No 42
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=99.26 E-value=2.4e-11 Score=71.58 Aligned_cols=55 Identities=27% Similarity=0.327 Sum_probs=44.0
Q ss_pred CCeEEEEEE-------cCC---Ce-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 12 KGYCIIIAE-------TPD---GK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 12 ~g~~i~l~~-------~~~---~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.+|||.+.. ..+ +. | +.++|||+++||++||+|++|||+++.+++ ++++.++|+.
T Consensus 16 ~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 83 (96)
T 2ego_A 16 QTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIR-HREIVDIIKA 83 (96)
T ss_dssp CCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred CCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 588888875 111 11 2 468999999999999999999999999987 8899888754
No 43
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.26 E-value=8.2e-12 Score=78.29 Aligned_cols=56 Identities=23% Similarity=0.385 Sum_probs=48.1
Q ss_pred cCCeEEEEEEcCCC---------------eE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPDG---------------KV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~~---------------~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..||||.+....+. .+ +.+||||+++||++||+|++|||+++.+++ +++++.+|++
T Consensus 38 ~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~-~~~~~~~l~~ 111 (132)
T 3l4f_D 38 SEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVG-HRQVVNMIRQ 111 (132)
T ss_dssp TSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSC-HHHHHHHHHH
T ss_pred CCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 57899999887652 23 468999999999999999999999999998 9999998864
No 44
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.26 E-value=1.9e-11 Score=71.05 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=44.4
Q ss_pred CCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 12 KGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 12 ~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.++||.+..... +.+ +.+||||+++||++||+|++|||+++.+++ ..++...++.
T Consensus 19 ~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 78 (91)
T 1m5z_A 19 EDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFD-CCLVVPLIAE 78 (91)
T ss_dssp SSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred CCccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 478888876542 332 468999999999999999999999999998 7777776653
No 45
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.26 E-value=1.8e-11 Score=71.26 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=46.4
Q ss_pred ccCCeEEEEEEcCC--Ce--E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 10 DLKGYCIIIAETPD--GK--V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 10 ~~~g~~i~l~~~~~--~~--i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
...++||.+....+ .. | +.++|||+++||++||+|++|||+++.+++ +.++..+++.
T Consensus 11 ~~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 73 (91)
T 2pkt_A 11 GPGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMT-HLEAQNRIKG 73 (91)
T ss_dssp SSSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred CCCCCCEEEEccCCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 35678888876543 12 2 468999999999999999999999999999 8888887764
No 46
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=2e-11 Score=72.56 Aligned_cols=56 Identities=25% Similarity=0.477 Sum_probs=46.6
Q ss_pred cCCeEEEEEEcC-----CCe-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETP-----DGK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~-----~~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.|+||.+.... .+. | +.+++||+++| |++||+|++|||+++.+++ ++++..+++.
T Consensus 21 ~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 85 (104)
T 2djt_A 21 YAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLT-HAQAVERIRA 85 (104)
T ss_dssp SSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCC-HHHHHHHHHH
T ss_pred CCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 789999997632 222 2 46899999999 9999999999999999998 8898887753
No 47
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=99.25 E-value=1.3e-11 Score=74.44 Aligned_cols=56 Identities=21% Similarity=0.372 Sum_probs=45.2
Q ss_pred cCCeEEEEEEcCCCe-E---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPDGK-V---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~~~-i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..++|+.+....++. + +.+||||+++| |++||+|++|||+++.+++ .+++.++|+.
T Consensus 23 ~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~-~~~~~~~l~~ 83 (97)
T 2ejy_A 23 EEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHS-VDQLQKAMKE 83 (97)
T ss_dssp SSCCSEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSC-SHHHHHHHHH
T ss_pred CCCeeEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 467888887644433 3 46899999999 9999999999999999866 6688888764
No 48
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=7e-12 Score=74.83 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=48.9
Q ss_pred ceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 6 SHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
|++.+ ..|+||.+..... +.+ +.++|||+++||++||+|++|||+++.+++ ++++...++
T Consensus 12 v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~-~~~~~~~~~ 77 (106)
T 2eei_A 12 CYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDAS-HEEVVEKVK 77 (106)
T ss_dssp EEEECCSSSCSCCEECCSSCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCC-HHHHHHHHH
T ss_pred EEEEECCCCCCEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 66666 7788998865433 333 458999999999999999999999999998 888887774
No 49
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.25 E-value=2e-11 Score=72.03 Aligned_cols=60 Identities=25% Similarity=0.285 Sum_probs=47.3
Q ss_pred ceEec-cCCeEEEEEEcCC----------C-eE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 6 SHMID-LKGYCIIIAETPD----------G-KV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~----------~-~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
..+.+ -.||||.+..... + .| +.+||||+++||++||+|++|||+++.+++ ++++...++
T Consensus 6 v~l~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~ 79 (99)
T 3khf_A 6 IVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLV-HMDVVELLL 79 (99)
T ss_dssp EEEEC-CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHH
T ss_pred EEEEeCCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHh
Confidence 34444 6788888875432 1 12 468999999999999999999999999888 889988876
No 50
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=99.25 E-value=1.4e-11 Score=70.73 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=46.2
Q ss_pred ccCCeEEEEEEcCC---Ce-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 10 DLKGYCIIIAETPD---GK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 10 ~~~g~~i~l~~~~~---~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
...++||.+....+ +. | +.+||||+++||++||+|++|||+++.+++ +.++...++.
T Consensus 9 ~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 71 (85)
T 1rgw_A 9 GPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMT-HLEAQNKIKS 71 (85)
T ss_dssp CSSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCC-HHHHHHHHTT
T ss_pred CCCccCEEEEeccCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcC-HHHHHHHHHc
Confidence 35678888864332 22 3 468999999999999999999999999997 8899888764
No 51
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.24 E-value=2.5e-11 Score=72.96 Aligned_cols=61 Identities=28% Similarity=0.347 Sum_probs=49.3
Q ss_pred ceEec-cCCeEEEEEEcC------CCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETP------DGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~------~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+.+ ..|+||.+.... .+.+ +.++|||+++| |++||+|++|||+++.+++ +.++...++.
T Consensus 12 v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 83 (110)
T 1um1_A 12 VELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLG-YLRAVDLIRH 83 (110)
T ss_dssp EEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCC-HHHHHHHHHT
T ss_pred EEEEECCCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 44544 689999997742 2232 46899999999 9999999999999999888 8888888765
No 52
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=99.24 E-value=2.7e-11 Score=75.23 Aligned_cols=59 Identities=31% Similarity=0.376 Sum_probs=47.7
Q ss_pred eEeccCCeEEEEEEcCC-CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 7 HMIDLKGYCIIIAETPD-GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 7 ~~~~~~g~~i~l~~~~~-~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
...+..++||.+....+ +.+ +.++|||+++||++||+|++|||+++.+++ ++++...|+
T Consensus 34 ~~~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~-~~~~~~~l~ 96 (124)
T 3tsv_A 34 KFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNII-REEAVLFLL 96 (124)
T ss_dssp EEECSSCCCEEEEECTTSCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCC-HHHHHHHHH
T ss_pred EcCCCCceeEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 34457788998876444 333 468999999999999999999999999997 778888765
No 53
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.24 E-value=1.2e-11 Score=75.09 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=49.9
Q ss_pred ceEeccCCeEEEEEEcCC-----CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMIDLKGYCIIIAETPD-----GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~~~g~~i~l~~~~~-----~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+.+..|+||.+....+ +.+ +.+|+||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus 19 v~l~k~~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~-~~~~~~~l~~ 88 (109)
T 1wi4_A 19 ITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVS-FEEAKSIITR 88 (109)
T ss_dssp EEECCSSCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCC-HHHHHHHHHH
T ss_pred EEEeCCCccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 344557899999986432 222 46899999999 9999999999999999998 9999999864
No 54
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.24 E-value=3e-11 Score=74.38 Aligned_cols=56 Identities=23% Similarity=0.320 Sum_probs=47.1
Q ss_pred cCCeEEEEEEcCC------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.|+||.+..... +.+ +.+||||+++| |++||+|++|||+++.+++ ++++.++++.
T Consensus 40 ~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~-~~~~~~~l~~ 105 (121)
T 2kom_A 40 TEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKS-QEEVVSLLRS 105 (121)
T ss_dssp TTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSC-HHHHHHHHHH
T ss_pred CCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCC-HHHHHHHHhc
Confidence 7789999876642 222 46899999999 9999999999999999998 8899888863
No 55
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.23 E-value=2e-11 Score=73.80 Aligned_cols=56 Identities=21% Similarity=0.404 Sum_probs=46.7
Q ss_pred cCCeEEEEEEcCC----CeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD----GKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~----~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ ..+ +.+||||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus 16 ~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~ 80 (108)
T 3cbz_A 16 YNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMS-NDDAVRVLRD 80 (108)
T ss_dssp HCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCC-HHHHHHHHHH
T ss_pred CCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 5789998877532 222 46899999999 9999999999999999988 8899998863
No 56
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=99.23 E-value=1.9e-11 Score=72.30 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=45.7
Q ss_pred cCCeEEEEEEcCCCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPDGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+|+.+.....+.+ +.+||||+++| |++||+|++|||+++.++. ++++..+++.
T Consensus 19 ~~glG~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~-~~~~~~~~~~ 78 (96)
T 2qkv_A 19 GKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP-FQVSYALFKG 78 (96)
T ss_dssp TBCCCEEEEECSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred CCCccEEEEeCCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence 5678888766444443 46899999999 9999999999999999987 7788777754
No 57
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.23 E-value=1.4e-11 Score=75.64 Aligned_cols=60 Identities=25% Similarity=0.354 Sum_probs=48.6
Q ss_pred ceEeccCCeEEEEEEcCC---CeE----EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 6 SHMIDLKGYCIIIAETPD---GKV----KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 6 ~~~~~~~g~~i~l~~~~~---~~i----v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
+.+.+..|+||.+....+ +.+ +.+|+||+++ ||++||+|++|||+++.+++ +++++++|+
T Consensus 22 ~~~~~~~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~-~~~~~~~l~ 89 (118)
T 1v6b_A 22 LRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYT-LAEAEAALQ 89 (118)
T ss_dssp EEEESCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCB-HHHHHHHHH
T ss_pred EEECCCCccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 445556788888876532 223 4589999999 99999999999999999998 999988875
No 58
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.23 E-value=1.4e-11 Score=74.22 Aligned_cols=59 Identities=25% Similarity=0.396 Sum_probs=48.0
Q ss_pred eEec-cCCeEEEEEEcCC-CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 7 HMID-LKGYCIIIAETPD-GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 7 ~~~~-~~g~~i~l~~~~~-~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
.+.+ ..|+||.+....+ +.+ +.+|+||+++| |++||+|++|||+++.+++ ++++..+++
T Consensus 20 ~l~~~~~~lG~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~l~ 84 (111)
T 2dlu_A 20 ELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMT-SEQVAQVLR 84 (111)
T ss_dssp EEECCSSCCCEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSC-HHHHHHHHH
T ss_pred EEEeCCCccCEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 3444 5788998876553 333 46899999999 9999999999999999998 889988775
No 59
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=99.23 E-value=2.6e-11 Score=71.20 Aligned_cols=60 Identities=22% Similarity=0.393 Sum_probs=47.5
Q ss_pred eEec-cCCeEEEEEEcCC------CeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 7 HMID-LKGYCIIIAETPD------GKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 7 ~~~~-~~g~~i~l~~~~~------~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.+.+ ..|+||.+....+ ..+ +.+||||+++| |++||+|++|||+++.+++ ++++.++++.
T Consensus 8 ~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 79 (97)
T 2jil_A 8 TLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTT-HAEAMSILKQ 79 (97)
T ss_dssp EEECBTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCC-HHHHHHHHHH
T ss_pred EEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 3444 5688998876532 122 46899999999 9999999999999999977 8899888753
No 60
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.23 E-value=3.5e-11 Score=70.49 Aligned_cols=55 Identities=29% Similarity=0.486 Sum_probs=43.3
Q ss_pred cCCeEEEEEEcC---------CCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 11 LKGYCIIIAETP---------DGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 11 ~~g~~i~l~~~~---------~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
..|+||.+.... .+.+ +.+||||+++||++||+|++|||+++.+++ ..++...++
T Consensus 13 ~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~~~ 79 (97)
T 2w4f_A 13 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAE-HHEAVEALR 79 (97)
T ss_dssp TTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHH
T ss_pred CCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcC-HHHHHHHHh
Confidence 678899987532 2222 468999999999999999999999999998 555555554
No 61
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.23 E-value=4.1e-11 Score=72.19 Aligned_cols=57 Identities=30% Similarity=0.449 Sum_probs=47.3
Q ss_pred cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960 11 LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68 (69)
Q Consensus 11 ~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~ 68 (69)
..++||.+....+ +.+ +.+||||+++| |++||+|++|||+++.+++ +++++..++.+
T Consensus 12 ~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~~ 80 (106)
T 4amh_A 12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVT-HEEAVTALKNT 80 (106)
T ss_dssp CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCC-HHHHHHHHHSC
T ss_pred CCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHhCC
Confidence 7788888875543 222 46899999999 9999999999999999988 88999888653
No 62
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.22 E-value=5.7e-12 Score=78.49 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=50.6
Q ss_pred eEec-cCCeEEEEEEcCC------Ce-E--EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960 7 HMID-LKGYCIIIAETPD------GK-V--KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68 (69)
Q Consensus 7 ~~~~-~~g~~i~l~~~~~------~~-i--v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~ 68 (69)
.+.+ ..|+||.+....+ .. | +.+|+||+++ ||++||+|++|||+++.+++ +++++++|+..
T Consensus 34 ~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~-~~~~~~~l~~~ 105 (130)
T 1i16_A 34 TLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLT-RFEAWNIIKAL 105 (130)
T ss_dssp EEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSC-HHHHHHHHHTS
T ss_pred EEEcCCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHhC
Confidence 3444 7899999987544 22 2 4689999999 99999999999999999998 99999999764
No 63
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.22 E-value=1.5e-11 Score=73.73 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=47.8
Q ss_pred ceEec-cCCeEEEEEEc---C------CCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAET---P------DGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~---~------~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+.+ ..|+||.+... . .+.+ +.+|+||+++| |++||+|++|||+++.+++ +.++..+++.
T Consensus 13 v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 87 (107)
T 1wf8_A 13 VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVT-QNFAATVLRN 87 (107)
T ss_dssp EEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCC-HHHHHHHHHH
T ss_pred EEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence 34444 77999999871 1 1222 46899999999 9999999999999999988 8888887753
No 64
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=99.22 E-value=2.3e-11 Score=70.78 Aligned_cols=56 Identities=29% Similarity=0.390 Sum_probs=46.3
Q ss_pred cCCeEEEEEEcCC--CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD--GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~--~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +.+ +.+||||+++| |++||+|++|||+++.+.. ++++...++.
T Consensus 15 ~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 76 (92)
T 2qg1_A 15 GKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNAT-QEAVAALLKC 76 (92)
T ss_dssp TSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred CCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 5788998876543 333 46899999999 9999999999999999988 8888887753
No 65
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.22 E-value=1.2e-11 Score=73.16 Aligned_cols=55 Identities=27% Similarity=0.474 Sum_probs=46.1
Q ss_pred cCCeEEEEEEcCCC--eE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 11 LKGYCIIIAETPDG--KV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 11 ~~g~~i~l~~~~~~--~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
..|+||.+....+. .+ +.+|+||+++| |++||+|++|||+++.+++ ++++..+++
T Consensus 21 ~~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~ 82 (103)
T 1wfv_A 21 AKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMT-HARAIELIK 82 (103)
T ss_dssp TTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCC-HHHHHHHHH
T ss_pred CCcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 67889988765542 23 35899999999 9999999999999999998 888888775
No 66
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.21 E-value=2.3e-11 Score=74.27 Aligned_cols=56 Identities=29% Similarity=0.373 Sum_probs=46.4
Q ss_pred CCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960 12 KGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68 (69)
Q Consensus 12 ~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~ 68 (69)
.|+||.+....+ +.+ +.+++||+++| |++||+|++|||+++.+++ +++++.+|+.+
T Consensus 30 ~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~-~~~~~~~l~~~ 97 (117)
T 1ujd_A 30 NGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKT-YEEVQSIISQQ 97 (117)
T ss_dssp CSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCC-HHHHHHHHSCC
T ss_pred CcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCC-HHHHHHHHhcC
Confidence 678888865543 122 46899999999 9999999999999999998 89999998763
No 67
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.21 E-value=5.6e-11 Score=72.91 Aligned_cols=57 Identities=26% Similarity=0.412 Sum_probs=47.4
Q ss_pred cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960 11 LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68 (69)
Q Consensus 11 ~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~ 68 (69)
..|+||.+....+ +.+ +.+||||+++| |++||+|++|||+++.+++ +++++.+++..
T Consensus 34 ~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~~ 102 (117)
T 2byg_A 34 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVT-HEEAVAILKNT 102 (117)
T ss_dssp TTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHTC
T ss_pred CCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence 5789999976422 232 46899999999 9999999999999999988 88999988753
No 68
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.21 E-value=9.8e-12 Score=76.17 Aligned_cols=61 Identities=16% Similarity=0.081 Sum_probs=47.2
Q ss_pred CceEec-cCCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 5 PSHMID-LKGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 5 ~~~~~~-~~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
.|++.+ ..++||.+.....-.| +.+++||+++||++||+|++|||+++.+++ ++++.++|+
T Consensus 18 ~v~l~~~~~~~G~~l~~~~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~-~~d~~~~i~ 81 (111)
T 1vae_A 18 GIHFTVEEGDLGFTLRGNTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLT-VSEVMKLLK 81 (111)
T ss_dssp CCCEECCSSCCSCCEESSSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCC-HHHHHHHHH
T ss_pred EEEEEcCCCcccEEEeCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 467776 6788887743322123 468999999999999999999999999666 678888775
No 69
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=99.21 E-value=1.8e-11 Score=75.21 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=46.3
Q ss_pred cCCeEEEEEEcCC------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +.+ +.++|||+++| |++||+|++|||+++.+++ +++++..++.
T Consensus 35 ~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~ 100 (117)
T 2fne_A 35 PDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVT-HEEAVAILKR 100 (117)
T ss_dssp TTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred CCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 5789999876432 122 46899999999 9999999999999999888 8899988864
No 70
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=4.8e-11 Score=70.19 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=45.0
Q ss_pred cCCeEEEEEEcCCCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPDGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..++||.+.....+.+ +.+++||+++| |++||+|++|||+++ +.+ ++++.++|+.
T Consensus 17 ~~~lG~~i~~~~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~-~~~~~~~l~~ 75 (91)
T 2e7k_A 17 GEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSD-PRALQELLRN 75 (91)
T ss_dssp TCCCCEEEEESSSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTC-HHHHHHHHHT
T ss_pred CCcEeEEEEecCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCC-HHHHHHHHHc
Confidence 4678999987544443 46899999987 999999999999999 666 7799988864
No 71
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=99.21 E-value=6.9e-11 Score=68.78 Aligned_cols=56 Identities=21% Similarity=0.409 Sum_probs=46.6
Q ss_pred cCCeEEEEEEcC-------CCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETP-------DGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~-------~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+.... .+.+ +.+|+||+++| |++||+|++|||+++.+++ +.++...++.
T Consensus 14 ~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 80 (97)
T 2iwn_A 14 VQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFT-NQQAVEVLRH 80 (97)
T ss_dssp TTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSC-HHHHHHHHHT
T ss_pred CCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 778999987762 2222 46899999999 9999999999999999998 8888887754
No 72
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.21 E-value=2.4e-11 Score=72.69 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=45.8
Q ss_pred cCCeEEEEEEcC--------CCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 11 LKGYCIIIAETP--------DGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 11 ~~g~~i~l~~~~--------~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
..|+||.+.... .+.+ +.+||||+++| |++||+|++|||+++.+++ ++++..+++
T Consensus 24 ~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~l~ 90 (108)
T 2jre_A 24 TSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMA-QSDVVEVLR 90 (108)
T ss_dssp TSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSC-HHHHHHHHH
T ss_pred CCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 678999987532 1332 46899999999 9999999999999999997 889988775
No 73
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=99.21 E-value=5.4e-11 Score=72.33 Aligned_cols=56 Identities=32% Similarity=0.512 Sum_probs=46.0
Q ss_pred cCCeEEEEEEcC--CCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETP--DGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~--~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+.... .+.+ +.+||||+++| |++||+|++|||+++.+|+ ..++...++.
T Consensus 24 ~~glG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 85 (119)
T 1tp5_A 24 STGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS-HEQAAIALKN 85 (119)
T ss_dssp TSCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred CCCccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 678999998765 3333 46899999999 9999999999999999998 7777766653
No 74
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.21 E-value=4e-11 Score=74.08 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=47.9
Q ss_pred cCCeEEEEEEcCC------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960 11 LKGYCIIIAETPD------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68 (69)
Q Consensus 11 ~~g~~i~l~~~~~------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~ 68 (69)
..|+||.+....+ +.+ +.+||||+++| |++||+|++|||+++.+++ +++++.+|+..
T Consensus 35 ~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~-~~~~~~~l~~~ 101 (118)
T 3b76_A 35 GESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVS-RSEAVALLKRT 101 (118)
T ss_dssp TCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSC-HHHHHHHHHSC
T ss_pred CCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence 4789999987542 222 46899999999 9999999999999999988 88999998754
No 75
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.21 E-value=3.6e-11 Score=72.05 Aligned_cols=61 Identities=23% Similarity=0.347 Sum_probs=48.4
Q ss_pred ceEec-cCCeEEEEEEcC-----------CCeE---EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETP-----------DGKV---KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~-----------~~~i---v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
|.+.+ ..+|||.+.... .+.+ +.+++||+++ ||++||+|++|||+++.+++ +++++.+++.
T Consensus 12 v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~-~~~~~~~~~~ 88 (107)
T 1uhp_A 12 LVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRAT-HDQAVEAFKT 88 (107)
T ss_dssp EEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred EEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 34444 578999987533 2232 4689999999 99999999999999999988 8899888763
No 76
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.21 E-value=5.1e-11 Score=73.28 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=47.2
Q ss_pred cCCeEEEEEEcCC---CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD---GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~---~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +.+ +.+++||+++| |++||+|++|||+++.+++ ++++.++|+.
T Consensus 29 ~~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~ 91 (123)
T 1ueq_A 29 NMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHT-HADVVKLFQS 91 (123)
T ss_dssp TTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSC-HHHHHHHHHT
T ss_pred CCceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 7789999875432 222 46899999999 9999999999999999998 8999998875
No 77
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=99.21 E-value=3e-11 Score=69.71 Aligned_cols=60 Identities=33% Similarity=0.588 Sum_probs=47.5
Q ss_pred eEec--cCCeEEEEEEcCC-C-eE----EecCChHhh-cCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 7 HMID--LKGYCIIIAETPD-G-KV----KLYGSPADK-SDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 7 ~~~~--~~g~~i~l~~~~~-~-~i----v~~gspA~~-aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.+.+ ..++||.+....+ + .+ +.+||||++ +||++||+|++|||+++.+++ ++++...++.
T Consensus 7 ~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 75 (87)
T 4e34_A 7 LLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK-HKEAVTILSQ 75 (87)
T ss_dssp EEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred EEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 4444 4588888875432 2 22 468999999 799999999999999999998 8899988864
No 78
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=99.20 E-value=4.7e-11 Score=70.74 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=46.3
Q ss_pred cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +.+ +.+||||+++| |++||+|++|||+++.+.+ +.++...++.
T Consensus 14 ~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 81 (102)
T 2i1n_A 14 NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVV-HSRAVEALKE 81 (102)
T ss_dssp TTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCC-HHHHHHHHHH
T ss_pred CCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 6789999986432 332 46899999999 9999999999999999988 8888887754
No 79
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.20 E-value=2.5e-11 Score=74.86 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=47.2
Q ss_pred eEec--cCCeEEEEEEcCC------CeE---EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 7 HMID--LKGYCIIIAETPD------GKV---KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 7 ~~~~--~~g~~i~l~~~~~------~~i---v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.+.+ ..|+||.+....+ +.+ +.+||||+++ ||++||+|++|||+++.+++ +++++.+++.
T Consensus 29 ~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~-~~~~~~~l~~ 100 (120)
T 2iwo_A 29 EMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMT-HTQAVNLLKN 100 (120)
T ss_dssp EEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCB-HHHHHHHHHH
T ss_pred EEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 3444 3488998876432 222 4689999999 99999999999999999998 9999998864
No 80
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.20 E-value=4.3e-11 Score=69.39 Aligned_cols=53 Identities=28% Similarity=0.347 Sum_probs=39.8
Q ss_pred CeEEEEEEcCCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 13 GYCIIIAETPDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 13 g~~i~l~~~~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
++||.+.....+.+ +.+||||+++||++||+|++|||+++.+.+ .+++.++++
T Consensus 18 ~lG~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~ 73 (90)
T 2eaq_A 18 DFGFTIKWDIPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYND-SKEWEEAMA 73 (90)
T ss_dssp CCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTC-HHHHHHHHH
T ss_pred cccEEEEecCCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCC-HHHHHHHHH
Confidence 56777755444433 468999999999999999999999994444 557766654
No 81
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=99.20 E-value=4.3e-11 Score=70.13 Aligned_cols=55 Identities=24% Similarity=0.289 Sum_probs=44.9
Q ss_pred cCCeEEEEEEcCC--CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 11 LKGYCIIIAETPD--GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 11 ~~g~~i~l~~~~~--~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
..|+||.+....+ +.+ +.++|||+++| |++||+|++|||+++.+++ +.++...++
T Consensus 15 ~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~ 75 (95)
T 2vwr_A 15 GEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGT-PELAAQIIQ 75 (95)
T ss_dssp TCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHH
T ss_pred CCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 3578998866543 333 46899999999 9999999999999999988 778887765
No 82
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=2.8e-11 Score=71.12 Aligned_cols=56 Identities=23% Similarity=0.178 Sum_probs=45.4
Q ss_pred cCCeEEEEEEcCC---CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD---GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~---~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..+|||.+....+ +.+ +.+++||+++||++||+|++|||+++.+++ +.++..+++.
T Consensus 17 ~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~~~~ 78 (94)
T 2eeg_A 17 PSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMT-HLEAQNRIKG 78 (94)
T ss_dssp SSCCSCCEECCTTTTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCC-HHHHHHHHHT
T ss_pred CCccCEEEECccCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 5678888865432 222 468999999999999999999999999997 8888887754
No 83
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=99.20 E-value=3.5e-11 Score=69.91 Aligned_cols=57 Identities=28% Similarity=0.452 Sum_probs=46.7
Q ss_pred cCCeEEEEEEcCC--CeE----EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960 11 LKGYCIIIAETPD--GKV----KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68 (69)
Q Consensus 11 ~~g~~i~l~~~~~--~~i----v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~ 68 (69)
..++||.+....+ ..+ +.++|||+++ ||++||+|++|||+++.+++ +.++...++.+
T Consensus 15 ~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~-~~~~~~~~~~~ 78 (90)
T 1qav_A 15 AGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT-HDEAVQALKKT 78 (90)
T ss_dssp TTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCC-HHHHHHHHHTC
T ss_pred CCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHhC
Confidence 4788998876432 222 4689999999 99999999999999999998 88998888653
No 84
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.20 E-value=4.4e-11 Score=70.91 Aligned_cols=55 Identities=31% Similarity=0.445 Sum_probs=45.2
Q ss_pred cCCeEEEEEEcCC---CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 11 LKGYCIIIAETPD---GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 11 ~~g~~i~l~~~~~---~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
+.|+||.+....+ +.+ +.+++||+++||++||+|++|||+++.+|+ ..+++..++
T Consensus 20 ~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~~~ 80 (101)
T 1uez_A 20 HEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVT-HAEAVKALK 80 (101)
T ss_dssp TTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCC-HHHHHHHSS
T ss_pred CCcccEEEeCCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcC-HHHHHHhhc
Confidence 6789999977642 332 468999999999999999999999999999 667776664
No 85
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.20 E-value=3e-11 Score=71.01 Aligned_cols=56 Identities=32% Similarity=0.491 Sum_probs=45.4
Q ss_pred cCCeEEEEEEcCC---------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD---------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~---------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +.+ +.++|||+++| |++||+|++|||+++.+++ ++++..+++.
T Consensus 16 ~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 84 (98)
T 1ihj_A 16 KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNST-EQAVIDLIKE 84 (98)
T ss_dssp SSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred CCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence 5688998865432 222 46899999999 9999999999999999998 7888887753
No 86
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.19 E-value=3.7e-11 Score=71.10 Aligned_cols=52 Identities=17% Similarity=0.414 Sum_probs=42.4
Q ss_pred cCCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 11 LKGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 11 ~~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
..++||.+.. +.| +.+||||+++||++||+|++|||+++.+.+ ++++.++|+
T Consensus 23 ~~~lG~~~~~---G~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~-~~~~~~~l~ 76 (90)
T 1y7n_A 23 RYQLGFSVQN---GIICSLMRGGIAERGGVRVGHRIIEINGQSVVATP-HEKIVHILS 76 (90)
T ss_dssp TSCCCEEEET---TEEEEECTTSHHHHHTCCSSCEEEEETTEECTTSC-HHHHHHHHH
T ss_pred ccccCeEecC---CEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 4567776632 344 568999999999999999999999998777 789998885
No 87
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=99.19 E-value=4.8e-11 Score=74.43 Aligned_cols=62 Identities=23% Similarity=0.338 Sum_probs=50.3
Q ss_pred CceEec-cCCeEEEEEEcCCCeEE-ecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 5 PSHMID-LKGYCIIIAETPDGKVK-LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 5 ~~~~~~-~~g~~i~l~~~~~~~iv-~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.+++.+ ..||||.+.....+..+ ..-.||+.+||++||+|++|||+++.+++ +++++++|+.
T Consensus 15 ~V~L~Kg~~G~GFsI~~~~~g~~V~~I~~~~~~aGL~~GD~Il~VNG~~v~~~~-h~evv~~lk~ 78 (113)
T 3soe_A 15 TIPLIKGPKGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQNLT-HLQVVEVLKQ 78 (113)
T ss_dssp EEEEECBTTBSSEEEEEETTEEEEEEESCGGGSTTCCTTCEEEEETTEECTTSC-HHHHHHHHHH
T ss_pred EEEEEECCCcccEEEeCCCCCcEEEEecChHHhCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 367777 78999999766555432 11127889999999999999999999999 9999999974
No 88
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=99.19 E-value=6.7e-11 Score=70.63 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=47.1
Q ss_pred EeccCCeEEEEEEcC-----CCeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 8 MIDLKGYCIIIAETP-----DGKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 8 ~~~~~g~~i~l~~~~-----~~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+..|+||.+.... +..+ +.+||||+++| |++||+|++|||+++.+++ ++++...++.
T Consensus 17 l~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~-~~~~~~~~~~ 85 (106)
T 3axa_A 17 LKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLS-QERAAELMTR 85 (106)
T ss_dssp EECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred ECCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 344788898886521 1122 46899999999 9999999999999999988 8899888764
No 89
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=99.18 E-value=5.4e-11 Score=73.81 Aligned_cols=56 Identities=20% Similarity=0.378 Sum_probs=46.3
Q ss_pred cCCeEEEEEEcCCC---e-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPDG---K-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~~---~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+. . | +.+|+||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus 28 ~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~-~~~~~~~l~~ 90 (129)
T 2kpk_A 28 SRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHT-HAQVVKIFQS 90 (129)
T ss_dssp SSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSC-HHHHHHHHHH
T ss_pred CCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 56888888764332 2 2 46899999999 9999999999999999998 8899988864
No 90
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=99.18 E-value=5.1e-11 Score=70.69 Aligned_cols=40 Identities=30% Similarity=0.506 Sum_probs=36.8
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.++|||+++||++||+|++|||+++.+++ ++++...++.
T Consensus 52 V~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 91 (104)
T 3sfj_A 52 VSEGGPAEIAGLQIGDKIMQVNGWDMTMVT-HDQARKRLTK 91 (104)
T ss_dssp ECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHTC
T ss_pred ECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 468999999999999999999999999988 8899998864
No 91
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.18 E-value=5.2e-11 Score=71.17 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=45.2
Q ss_pred CCeEEEEEEcCC---CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 12 KGYCIIIAETPD---GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 12 ~g~~i~l~~~~~---~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
.++||.+....+ +.+ +.+++||+++||++||+|++|||+++.+++ ++++.++|+
T Consensus 27 ~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~l~ 86 (104)
T 1wi2_A 27 AQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIE-HSKAVEILK 86 (104)
T ss_dssp CCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCC-HHHHHHHHH
T ss_pred CCccEEEEcccCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHh
Confidence 688998876543 222 468999999999999999999999999977 889988875
No 92
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=99.18 E-value=4.4e-11 Score=71.35 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=47.8
Q ss_pred ceEec--cCCeEEEEEEc----------CCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID--LKGYCIIIAET----------PDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~--~~g~~i~l~~~----------~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
|.+.+ -.+|||.+... ..+.+ +.+++||+++||++||+|++|||+++.+++ ++++.++|+.
T Consensus 19 v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~-~~~~~~~l~~ 94 (104)
T 2z17_A 19 VTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFT-YKQVVDLIRS 94 (104)
T ss_dssp EEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCC-HHHHHHHHHH
T ss_pred EEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCC-HHHHHHHHHh
Confidence 44554 35789988762 11222 468999999999999999999999999888 8899988864
No 93
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.18 E-value=1.7e-11 Score=77.31 Aligned_cols=60 Identities=12% Similarity=0.157 Sum_probs=48.3
Q ss_pred eEec-cCCeEEEEEEcCCCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 7 HMID-LKGYCIIIAETPDGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 7 ~~~~-~~g~~i~l~~~~~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.+.+ +.|+||.+.......+ +.+|+||+++| |++||+|++|||+++.+.+ +++++++|+.
T Consensus 32 ~l~k~~~glG~~i~~~~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s-~~d~~~~l~~ 96 (126)
T 1wif_A 32 KLTVGNLGLGLVVIQNGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYT-LREFLKLLQN 96 (126)
T ss_dssp EEECCTTCCCCCEEEETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCC-HHHHHHHHTS
T ss_pred EEecCCceEeEEEEcCCCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCC-HHHHHHHHhc
Confidence 3444 8899988766433322 46899999999 9999999999999998777 7799999875
No 94
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.18 E-value=8.1e-11 Score=71.36 Aligned_cols=56 Identities=34% Similarity=0.487 Sum_probs=46.4
Q ss_pred cCCeEEEEEEcC---CCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETP---DGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~---~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+.... .+.+ +.+||||+++| |++||+|++|||+++.+++ +.++...++.
T Consensus 34 ~~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~ 96 (112)
T 2r4h_A 34 AKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMK-HSRAIELIKN 96 (112)
T ss_dssp TTBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred CCccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 568899887653 2322 46899999999 9999999999999999998 8899888764
No 95
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=9.5e-11 Score=71.55 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=47.7
Q ss_pred eEec-cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 7 HMID-LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 7 ~~~~-~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
.+.+ -.|+||.+....+ +.+ +.+++||+++| |++||+|++|||+++.+++ ++++...++
T Consensus 22 ~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~-~~~~~~~~~ 93 (120)
T 2eno_A 22 NLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLL-HQDAVDLFR 93 (120)
T ss_dssp EEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCC-HHHHHHHHH
T ss_pred EEEECCCCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 3444 5789999876432 222 46899999999 9999999999999999998 889888775
No 96
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=99.17 E-value=5.3e-11 Score=69.61 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=42.5
Q ss_pred CCeEEEEEEcCCCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960 12 KGYCIIIAETPDGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68 (69)
Q Consensus 12 ~g~~i~l~~~~~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~ 68 (69)
.+||+.+.. +.+ +.+||||+++| |++||+|++|||+++.+++ ++++.++|+..
T Consensus 13 ~~~G~~~~~---gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~-~~~~~~~i~~~ 69 (88)
T 3e17_A 13 EEYGLRLGS---QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMS-LTDARKLIEKS 69 (88)
T ss_dssp CCCCEEEEE---EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHHT
T ss_pred CCCCEEEeC---CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence 456665533 222 46899999999 9999999999999999888 99999988643
No 97
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.17 E-value=3.4e-11 Score=72.81 Aligned_cols=56 Identities=32% Similarity=0.457 Sum_probs=46.5
Q ss_pred cCCeEEEEEEcCC----CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD----GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~----~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +.+ +.+|+||+++| |++||+|++|||+++.+++ ++++..+++.
T Consensus 27 ~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~l~~ 90 (116)
T 2dm8_A 27 RSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSS-HEEAITALRQ 90 (116)
T ss_dssp SSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSC-HHHHHHHHHT
T ss_pred CCcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 6788888865443 233 35899999999 9999999999999999998 8899988864
No 98
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=99.16 E-value=7.6e-11 Score=72.44 Aligned_cols=56 Identities=27% Similarity=0.337 Sum_probs=46.6
Q ss_pred cCCeEEEEEEcCC---Ce-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD---GK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~---~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..++||.+....+ +. | +.+||||+++| |++||+|++|||+++.+++ ++++..+++.
T Consensus 30 ~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~-~~~~~~~l~~ 92 (125)
T 3hpk_A 30 QNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKT-KVEVAKMIQE 92 (125)
T ss_dssp TSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred CCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 4678888876543 22 2 46899999999 9999999999999999988 8899998864
No 99
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.16 E-value=8.5e-11 Score=70.65 Aligned_cols=56 Identities=23% Similarity=0.400 Sum_probs=46.7
Q ss_pred cCCeEEEEEEcCC--CeE---EecCChHhhcCC-CCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD--GKV---KLYGSPADKSDL-EIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~--~~i---v~~gspA~~aGL-k~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.|+||.+....+ +.+ +.+||||+++|| ++||+|++|||+++.+++ ++++.++++.
T Consensus 12 ~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 73 (112)
T 1qau_A 12 VGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS-YDSALEVLRG 73 (112)
T ss_dssp TTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSC-HHHHHHHHHH
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 7789999977654 332 468999999998 999999999999999977 7788888753
No 100
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.16 E-value=1.9e-11 Score=74.14 Aligned_cols=61 Identities=26% Similarity=0.436 Sum_probs=46.4
Q ss_pred ceEec--cCCeEEEEEEcC--CCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID--LKGYCIIIAETP--DGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~--~~g~~i~l~~~~--~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
|++-+ ..+|||.+.... .+.+ +.+||||+++||++||+|++|||+++.+++ ++++.+.++.
T Consensus 17 ~~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 84 (114)
T 2edz_A 17 CKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEE-HAQVVELVRK 84 (114)
T ss_dssp EEEECCTTCCCSCEEECCTTCCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSC-HHHHHHHHHH
T ss_pred EEEeCCCCCcccEEEEEecCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 34444 456676665432 3333 458999999999999999999999999987 8899888753
No 101
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=99.16 E-value=2.7e-11 Score=73.80 Aligned_cols=56 Identities=21% Similarity=0.379 Sum_probs=47.0
Q ss_pred cCCeEEEEEEcCC----CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD----GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~----~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +.+ +.+++||+++| |++||+|++|||+++.+++ +++++.+++.
T Consensus 26 ~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~-~~~~~~~l~~ 89 (119)
T 1x6d_A 26 GAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTT-HHDALAILRQ 89 (119)
T ss_dssp TSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCC-HHHHHHHHHH
T ss_pred CCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 7789999976543 222 46899999999 9999999999999999888 8899888753
No 102
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.16 E-value=3.1e-11 Score=71.90 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=44.4
Q ss_pred ccCCeEEEEEEcCCC--eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 10 DLKGYCIIIAETPDG--KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 10 ~~~g~~i~l~~~~~~--~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
.-.++||.+....+. .+ +.++|||+++||++||+|++|||+++.+++ +.++...++
T Consensus 13 ~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~~~ 74 (103)
T 1wf7_A 13 GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMT-HLEAQNKIK 74 (103)
T ss_dssp SSSCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCC-HHHHHHHHH
T ss_pred CCCccCEEEeccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 346788887654432 22 358999999999999999999999999997 778877764
No 103
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.15 E-value=3e-11 Score=70.92 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=45.3
Q ss_pred cCCeEEEEEEcCCC--eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPDG--KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~~--~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..++||.+....+. .+ +.++|||+++||++||+|++|||+++.+++ ++++.++++.
T Consensus 15 ~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 76 (94)
T 1vb7_A 15 PAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENML-HAEAQSKIRQ 76 (94)
T ss_dssp SSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred CCCccEEEecccCCCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 56778877654332 22 458999999999999999999999999997 7899888865
No 104
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=99.15 E-value=4.1e-11 Score=72.64 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=45.2
Q ss_pred cCCeEEEEEEcCCCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPDGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+|+.+.....+.+ +.+||||+++| |++||+|++|||+++.+.. ++++..+++.
T Consensus 13 ~~glG~~i~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~-~~~~~~~~~~ 72 (106)
T 2la8_A 13 GKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP-FQVCYALFKG 72 (106)
T ss_dssp SSTTCCEEEECSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSC-HHHHHHHHHS
T ss_pred CCccCEEEEeCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHhC
Confidence 5677887766444443 35899999999 9999999999999999988 7888877754
No 105
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.15 E-value=4.5e-11 Score=72.47 Aligned_cols=56 Identities=36% Similarity=0.703 Sum_probs=45.9
Q ss_pred cCCeEEEEEEcCC----C-------eE--EecCChHhh-cCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD----G-------KV--KLYGSPADK-SDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~----~-------~i--v~~gspA~~-aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..||||.+....+ + .| +.+|+||++ +||++||+|++|||+++.++. ++++.++|+.
T Consensus 21 ~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 90 (114)
T 1uew_A 21 NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMP-HADIVKLIKD 90 (114)
T ss_dssp TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSC-HHHHHHHHHH
T ss_pred CCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 5789999975321 1 23 568999999 999999999999999999987 8899888753
No 106
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=99.15 E-value=4.6e-11 Score=71.52 Aligned_cols=57 Identities=35% Similarity=0.584 Sum_probs=46.7
Q ss_pred cCCeEEEEEEcCC-C-e-E---EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960 11 LKGYCIIIAETPD-G-K-V---KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68 (69)
Q Consensus 11 ~~g~~i~l~~~~~-~-~-i---v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~ 68 (69)
..|+||.+....+ + . + +.+||||+++ ||++||+|++|||+++.+++ +++++.+++..
T Consensus 20 ~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~-~~~~~~~l~~~ 83 (103)
T 2dc2_A 20 HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK-HKEAVTILSQQ 83 (103)
T ss_dssp SSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSC-HHHHHHHHHHC
T ss_pred CCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCC-HHHHHHHHHhC
Confidence 4689998876542 2 2 2 4689999995 99999999999999999998 99999988653
No 107
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.15 E-value=1.5e-10 Score=69.49 Aligned_cols=56 Identities=29% Similarity=0.477 Sum_probs=44.4
Q ss_pred cCCeEEEEEEc---------CCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAET---------PDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~---------~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.|+||.+... ..+.+ +.++|||+++||++||+|++|||+++.++. ..++...++.
T Consensus 25 ~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~~~~ 92 (110)
T 1x5q_A 25 TGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAE-HHEAVEALRG 92 (110)
T ss_dssp SSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHHS
T ss_pred CCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcC-HHHHHHHhhC
Confidence 77899998742 12232 468999999999999999999999999988 6667666643
No 108
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.15 E-value=2.4e-11 Score=72.87 Aligned_cols=61 Identities=31% Similarity=0.449 Sum_probs=48.7
Q ss_pred ceEec-cCCeEEEEEEcCC--CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETPD--GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~--~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+.+ ..|+||.+....+ +.+ +.+++||+++| |++||+|++|||+++.+++ +.++..+++.
T Consensus 19 v~l~k~~~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~~~~ 86 (113)
T 1um7_A 19 IILHKGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNAT-HEQAAAALKR 86 (113)
T ss_dssp EEEECCSSCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCC-HHHHHHHHHS
T ss_pred EEEEECCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 44544 6788998866542 222 46899999999 9999999999999999998 8888887754
No 109
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.15 E-value=9.1e-11 Score=69.68 Aligned_cols=61 Identities=25% Similarity=0.397 Sum_probs=47.3
Q ss_pred ceEec-cCCeEEEEEEcCCCeEEe-cCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETPDGKVKL-YGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~~~iv~-~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+++.+ +.|+||.+.....+.++. .-.+|+++||++||+|++|||+++.+++ +++++++|+.
T Consensus 14 v~l~~~~~g~G~~i~~~~~Gv~V~~v~~~a~~aGL~~GD~I~~vng~~v~~~~-~~~~~~~l~~ 76 (96)
T 1ujv_A 14 LTIVKGAQGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQNLS-HTEVVDILKD 76 (96)
T ss_dssp EEEECCSSSSSEEEEEETTEEEEEEESCGGGSTTCCSSCEEEEETTEECSSCC-HHHHHHHHHH
T ss_pred EEEEeCCCceeEEEEcCCCCEEEEEEecccccCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 45666 899999997655443321 1124789999999999999999999998 8899998864
No 110
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.15 E-value=1.6e-10 Score=70.20 Aligned_cols=59 Identities=25% Similarity=0.347 Sum_probs=44.3
Q ss_pred eEec-cCCeEEEEEEcCCCeE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 7 HMID-LKGYCIIIAETPDGKV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 7 ~~~~-~~g~~i~l~~~~~~~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
.+.+ -.++|+.+....+..+ +.+|+||+++||++||+|++|||+++.+|+ ..+....++
T Consensus 24 ~l~~~~~~lG~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~-~~~~~~~~~ 87 (117)
T 1uit_A 24 KVQKGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSAT-EQQARLIIG 87 (117)
T ss_dssp EEECSSCCCCEEEEECTTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCC-HHHHHHHTT
T ss_pred EEEeCCCCccEEEEccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 3344 3578888876644333 468999999999999999999999999998 555554443
No 111
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.14 E-value=4.1e-11 Score=71.61 Aligned_cols=56 Identities=23% Similarity=0.441 Sum_probs=47.0
Q ss_pred cCCeEEEEEEcCC---------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD---------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~---------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +.+ +.+++||+++| |++||+|++|||+++.+++ +++++.+++.
T Consensus 17 ~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~l~~ 85 (105)
T 1wha_A 17 ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEAR-HDHAVSLLTA 85 (105)
T ss_dssp TTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCC-HHHHHHHHTS
T ss_pred CCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 6789999976432 222 45899999999 9999999999999999988 8899998875
No 112
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.14 E-value=1.5e-10 Score=68.56 Aligned_cols=40 Identities=38% Similarity=0.633 Sum_probs=36.4
Q ss_pred EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 27 KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 27 v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+||||+++| |++||+|++|||+++.+++ ++++.++|+.
T Consensus 46 V~~~spA~~aG~l~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 86 (103)
T 2fcf_A 46 VLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS-HEQAVEAIRK 86 (103)
T ss_dssp ECSSSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred eCCCCcHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 45899999999 9999999999999999987 8899988865
No 113
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.13 E-value=1.2e-10 Score=71.60 Aligned_cols=55 Identities=24% Similarity=0.437 Sum_probs=44.8
Q ss_pred cCCeEEEEEEcC-------CC-eE--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 11 LKGYCIIIAETP-------DG-KV--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 11 ~~g~~i~l~~~~-------~~-~i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
+.|+||.+.... .. .| +.+++||+++| |++||+|++|||+++.+++ ++++.++|+
T Consensus 26 ~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~-~~~~~~~l~ 91 (122)
T 1v5q_A 26 VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDST-FEEANQLLR 91 (122)
T ss_dssp SSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSC-HHHHHHHHH
T ss_pred CCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 589999997541 11 23 46899999999 9999999999999999976 778888775
No 114
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=99.12 E-value=4.1e-11 Score=72.29 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=44.9
Q ss_pred cCCeEEEEEEc--------CCCeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAET--------PDGKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~--------~~~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+... .+..+ +.+||||+++| |++||+|++|||+++.+++ +.+++..++.
T Consensus 14 ~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 82 (113)
T 2g5m_B 14 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT-QSFAASVLRN 82 (113)
T ss_dssp SSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCC-HHHHHHHHHH
T ss_pred CCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence 57888888761 11222 35899999999 9999999999999999988 8888887753
No 115
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=99.12 E-value=8.6e-11 Score=72.81 Aligned_cols=55 Identities=25% Similarity=0.362 Sum_probs=44.8
Q ss_pred CCeEEEEEEcCC------------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 12 KGYCIIIAETPD------------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 12 ~g~~i~l~~~~~------------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.|+||.+....+ +.+ +.+||||+++| |++||+|++|||+++.+++ ++++..+|+.
T Consensus 42 ~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~-~~~~~~~l~~ 112 (128)
T 1nf3_C 42 KPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKS-LDQVTDMMIA 112 (128)
T ss_dssp SCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCC-HHHHHHHHHH
T ss_pred CCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 578888864421 222 45899999999 9999999999999998888 8899998853
No 116
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=1.7e-10 Score=68.33 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=44.1
Q ss_pred CeEEEEEEcC---CCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 13 GYCIIIAETP---DGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 13 g~~i~l~~~~---~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.+||.+.... .+.+ +.++|||+++||++||+|++|||+++.+++ ++++...++.
T Consensus 23 ~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~~~~ 82 (100)
T 2eeh_A 23 RLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTT-MGSAVKVLTS 82 (100)
T ss_dssp SCSEEEECCTTTTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCC-HHHHHHHHHS
T ss_pred CccEEEEccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHhhcC
Confidence 3788886653 2332 468999999999999999999999999998 8899887753
No 117
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.12 E-value=3.4e-11 Score=74.77 Aligned_cols=56 Identities=20% Similarity=0.376 Sum_probs=46.8
Q ss_pred cCCeEEEEEEcCCC------eE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPDG------KV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~~------~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.|+||.+....+. .+ +.+|+||+++| |++||+|++|||+++.+++ +++++++|+.
T Consensus 36 ~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~ 102 (127)
T 1wg6_A 36 SAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKS-NHEAMETLRR 102 (127)
T ss_dssp TTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSC-HHHHHHHHHH
T ss_pred CCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHH
Confidence 67888888765421 22 35899999999 9999999999999999998 9999998863
No 118
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.8e-11 Score=74.14 Aligned_cols=62 Identities=23% Similarity=0.321 Sum_probs=47.1
Q ss_pred CceEecc-C---CeEEEEEEcC-CC--eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 5 PSHMIDL-K---GYCIIIAETP-DG--KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 5 ~~~~~~~-~---g~~i~l~~~~-~~--~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.|++.+. . ++||.+.... .+ .+ +.++|||+++||++||+|++|||+++.+++ ++++.++++.
T Consensus 18 ~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~-~~~~~~~l~~ 90 (114)
T 2d8i_A 18 SIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALN-SSMLKDFLSQ 90 (114)
T ss_dssp EEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCC-HHHHHHHHTS
T ss_pred EEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcC-HHHHHHHHhC
Confidence 4566652 2 5777776432 22 22 358999999999999999999999999987 8899888764
No 119
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=99.11 E-value=1.4e-10 Score=75.87 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=46.9
Q ss_pred cCCeEEEEEE---cC-----CCeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAE---TP-----DGKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~---~~-----~~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+.. .. +..+ +.+|+||+++| |++||+|++|||+++.+++ +++++.+|++
T Consensus 90 ~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~-~~~~~~~l~~ 158 (170)
T 3egg_C 90 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVT-QSFAASVLRN 158 (170)
T ss_dssp TTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBC-HHHHHHHHHH
T ss_pred CCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 6789999877 11 1222 46899999999 9999999999999999999 9999999875
No 120
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.11 E-value=1.7e-10 Score=70.53 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=48.0
Q ss_pred eEec-c-CCeEEEEEEcCC---CeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 7 HMID-L-KGYCIIIAETPD---GKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 7 ~~~~-~-~g~~i~l~~~~~---~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.+.+ . .++||.+....+ +.+ +.+|+||+++| |++||+|++|||+++.+++ ++++.++|+.
T Consensus 20 ~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~-~~~~~~~l~~ 89 (117)
T 1v62_A 20 EIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCS-LLEATKLLAS 89 (117)
T ss_dssp EEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCC-HHHHHHHHHS
T ss_pred EEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 4444 3 688888877533 323 35899999999 9999999999999998888 8899998864
No 121
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.11 E-value=1e-10 Score=72.08 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=45.3
Q ss_pred cCCeEEEEEEcCCC-----eE----EecCChHhhcC-CCCCCEEEEECCEEeC-CCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPDG-----KV----KLYGSPADKSD-LEIGDEILEVNGKTFK-DNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~~-----~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~-~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+. .+ +.+|+||+++| |++||+|++|||+++. +++ +++++.+|+.
T Consensus 36 ~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~-~~~~~~~l~~ 102 (128)
T 2db5_A 36 TGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNIS-HQQAIALLQQ 102 (128)
T ss_dssp SSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSC-HHHHHHHHHH
T ss_pred CCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCC-HHHHHHHHHc
Confidence 36888888654322 23 35899999999 9999999999999998 888 8899998864
No 122
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.11 E-value=1.1e-10 Score=71.96 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=45.8
Q ss_pred cCCeEEEEEEcC-------CCeE----EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETP-------DGKV----KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~-------~~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+.... ...+ +.+|+||+++| |++||+|++|||+++.+++ ++++.++|+.
T Consensus 26 ~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~l~~ 93 (129)
T 2dmz_A 26 GQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFA-NHDVVEVLRN 93 (129)
T ss_dssp TCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCC-HHHHHHHHHH
T ss_pred CCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 568899887632 1222 45899999999 9999999999999999988 8899988753
No 123
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=99.11 E-value=1.3e-10 Score=72.56 Aligned_cols=56 Identities=27% Similarity=0.271 Sum_probs=44.9
Q ss_pred cCCeEEEEEEcCC------Ce-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD------GK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~------~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..++||.+....+ +. | +.+|+||+++| |++||+|++|||+++.+.+ ++++.++|+.
T Consensus 47 ~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~-~~~~~~~l~~ 112 (131)
T 1wfg_A 47 GAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGAT-FEEVYNIILE 112 (131)
T ss_dssp CTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred CCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 4578888754221 12 2 46899999999 9999999999999999988 8899998854
No 124
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=99.11 E-value=7e-11 Score=79.96 Aligned_cols=61 Identities=30% Similarity=0.443 Sum_probs=50.5
Q ss_pred CceEec-cCCeEEEEEEcCC--Ce-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 5 PSHMID-LKGYCIIIAETPD--GK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 5 ~~~~~~-~~g~~i~l~~~~~--~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
.|++.+ +.||||.+....+ +. | +.+|+||+++||++||+|++|||+++.+++ ++++..+|+
T Consensus 12 ~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s-~~dl~~~l~ 78 (216)
T 2krg_A 12 LCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQ-HGDVVSAIR 78 (216)
T ss_dssp EEEEECCSSSSCEEECCCSSSCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCC-THHHHHHHH
T ss_pred EEEEEeCCCCceEEEEecCCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 477777 8999999976653 23 3 568999999999999999999999999666 678888775
No 125
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.10 E-value=9.4e-11 Score=69.93 Aligned_cols=56 Identities=21% Similarity=0.209 Sum_probs=45.6
Q ss_pred cCCeEEEEEEcCCC--eE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPDG--KV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~~--~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..++||.+....+. .+ +.++|||+++||++||+|++|||+++.++. ++++.++|+.
T Consensus 14 ~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 75 (103)
T 1v5l_A 14 PAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMT-HADAQDRIKA 75 (103)
T ss_dssp SSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCC-HHHHHHHHTT
T ss_pred CCCcCEEEeccccCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 56788888665432 22 458999999999999999999999999977 7799988864
No 126
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=99.10 E-value=2.6e-10 Score=72.66 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=45.6
Q ss_pred ceEec--cCCeEEEEEEcCCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960 6 SHMID--LKGYCIIIAETPDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65 (69)
Q Consensus 6 ~~~~~--~~g~~i~l~~~~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i 65 (69)
|++.+ ..++||.+.....+.+ +.+||||++|||++||+|++|||+++.+|+ .+....++
T Consensus 8 v~l~k~~~~~lG~~~~~~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~-~~~~~~~~ 71 (166)
T 1w9e_A 8 VILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWS-SDKAHKVL 71 (166)
T ss_dssp EEEECCTTSCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHH
T ss_pred EEEEeCCCCcEeEEEEeCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHH
Confidence 56665 4578888877655443 468999999999999999999999999998 43344444
No 127
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.10 E-value=9.3e-11 Score=71.20 Aligned_cols=56 Identities=34% Similarity=0.503 Sum_probs=46.4
Q ss_pred cCCeEEEEEEcCC------------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD------------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~------------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..++||.+....+ +.+ +.+++||+++| |++||+|++|||+++.+++ +++++.+++.
T Consensus 26 ~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~-~~~~~~~~~~ 97 (117)
T 2ehr_A 26 NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNAS-HSEAVEAIKN 97 (117)
T ss_dssp SSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCC-HHHHHHHHHT
T ss_pred CCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 4689998865432 232 46899999999 9999999999999999998 8899988865
No 128
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=99.10 E-value=1.7e-10 Score=68.70 Aligned_cols=55 Identities=25% Similarity=0.450 Sum_probs=44.5
Q ss_pred CCeEEEEEEcCCC-----eE---EecCChHhh-cCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 12 KGYCIIIAETPDG-----KV---KLYGSPADK-SDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 12 ~g~~i~l~~~~~~-----~i---v~~gspA~~-aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.|+||.+.....+ .+ +.+|+||++ +||++||+|++|||+++.+.+ ++++.++|+.
T Consensus 21 ~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~-~~~~~~~l~~ 84 (101)
T 2yt7_A 21 EGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLP-LAACQAAVRE 84 (101)
T ss_dssp CCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSC-HHHHHHHHHH
T ss_pred CccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 5889998754432 22 468999999 579999999999999997777 7899988864
No 129
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.09 E-value=8.7e-11 Score=71.50 Aligned_cols=55 Identities=24% Similarity=0.442 Sum_probs=45.0
Q ss_pred CCeEEEEEEcCC---CeE---EecCChHhhc--CCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 12 KGYCIIIAETPD---GKV---KLYGSPADKS--DLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 12 ~g~~i~l~~~~~---~~i---v~~gspA~~a--GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.+|||.+....+ +.+ +.+||||+++ ||++||+|++|||+++.+++ +++++.+++.
T Consensus 27 ~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~-~~~~~~~~~~ 89 (119)
T 2cs5_A 27 GRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHT-HDQVVLFIKA 89 (119)
T ss_dssp SCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSC-HHHHHHHHHH
T ss_pred CCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 458888876543 122 4689999999 99999999999999999998 9999888753
No 130
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=3.1e-11 Score=74.52 Aligned_cols=40 Identities=33% Similarity=0.478 Sum_probs=36.6
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+++||+++||++||+|++|||+++.+++ ++++.++|+.
T Consensus 68 V~~~spA~~aGL~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 107 (126)
T 2yuy_A 68 VKEGGPAFEAGLCTGDRIIKVNGESVIGKT-YSQVIALIQN 107 (126)
T ss_dssp CCSSSHHHHHTCCSSCCCCEETTEECSSCC-HHHHHHHHHT
T ss_pred ECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 468999999999999999999999999888 8899998865
No 131
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=99.08 E-value=2.8e-10 Score=69.62 Aligned_cols=55 Identities=27% Similarity=0.315 Sum_probs=43.5
Q ss_pred CCeEEEEEEcCCC---eE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 12 KGYCIIIAETPDG---KV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 12 ~g~~i~l~~~~~~---~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.++||.+....+. .+ +.+||||+++| |++||+|++|||+++.+.+ .+++.++++.
T Consensus 36 ~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~-~~~~~~~l~~ 97 (114)
T 2gzv_A 36 NLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKT-KVEVAKMIQE 97 (114)
T ss_dssp SCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred CcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 3488888765442 22 46899999999 9999999999999997666 7788888753
No 132
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=99.08 E-value=2.3e-10 Score=74.32 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=46.3
Q ss_pred CCeEEEEEEcCCCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960 12 KGYCIIIAETPDGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68 (69)
Q Consensus 12 ~g~~i~l~~~~~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~ 68 (69)
.++||.+.....+.+ +.+||||+++| |++||+|++|||+++.+|+ ++++..+++..
T Consensus 125 ~~lG~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~-~~~~~~~l~~~ 184 (206)
T 3r0h_A 125 KELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP-FQVCYALFKGA 184 (206)
T ss_dssp CCCCEEEEECSSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCC-HHHHHHHHHTC
T ss_pred CccCeEEEcCCceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHcC
Confidence 567887765554543 46899999999 9999999999999999998 88999888653
No 133
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=99.08 E-value=3e-10 Score=69.29 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=47.1
Q ss_pred cCCeEEEEEEcCCCe--E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPDGK--V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~~~--i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
-.+.|+.+.....+. | +.+|+||++.| |++||+|++|||+++.+|+ +++++++|+.
T Consensus 15 ~~~LG~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~-h~evv~lLk~ 75 (95)
T 3gge_A 15 EDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWR-HYDVAKKLKE 75 (95)
T ss_dssp SSCCCEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred CCCceEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCC-HHHHHHHHHh
Confidence 567788876544443 2 56899999997 9999999999999999999 9999999975
No 134
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=99.08 E-value=2.5e-10 Score=67.82 Aligned_cols=57 Identities=25% Similarity=0.320 Sum_probs=45.5
Q ss_pred EeccCCeEEEEEEcC-----------CCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 8 MIDLKGYCIIIAETP-----------DGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 8 ~~~~~g~~i~l~~~~-----------~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
+.+-.++||.+.... .+.+ +.++|||++ ||++||+|++|||+++.+++ +.++...++
T Consensus 17 l~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~-~~~~~~~~~ 87 (103)
T 1n7t_A 17 VEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIE-HGQAVSLLK 87 (103)
T ss_dssp EECSSCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCC-HHHHHHHHH
T ss_pred EccCCCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCC-HHHHHHHhh
Confidence 344568999987732 2333 458999999 99999999999999999988 888887775
No 135
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=99.08 E-value=1.5e-10 Score=70.18 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=46.4
Q ss_pred ceEec--cCCeEEEEEEcCC-----CeE----EecCChHhhcC-CCCCCEEEEECCEEeC-CCCChHHHHHhhcC
Q psy16960 6 SHMID--LKGYCIIIAETPD-----GKV----KLYGSPADKSD-LEIGDEILEVNGKTFK-DNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~--~~g~~i~l~~~~~-----~~i----v~~gspA~~aG-Lk~GD~Il~Vng~~i~-~~~~~~ev~~~i~~ 67 (69)
|++.+ ..|+||.+....+ ..+ +.+||||+++| |++||+|++|||+++. +++ ++++..+++.
T Consensus 24 v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~-~~~~~~~l~~ 97 (117)
T 2o2t_A 24 FELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTIT-HQQAISILQK 97 (117)
T ss_dssp EEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSC-HHHHHHHHHH
T ss_pred EEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCC-HHHHHHHHHc
Confidence 34444 3678887765431 122 35899999999 9999999999999998 777 8899888753
No 136
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.08 E-value=1.8e-10 Score=70.75 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=46.2
Q ss_pred cCCeEEEEEEcCC----CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD----GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~----~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +.+ +.+||||+++| |++||+|++|||+++.+++ +.+++..++.
T Consensus 35 ~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~-~~~~~~~~~~ 98 (124)
T 2daz_A 35 KNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRS-HQNASAIIKT 98 (124)
T ss_dssp SSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSC-HHHHHHHHHH
T ss_pred CCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 5689999876543 222 46899999999 9999999999999999988 8888887753
No 137
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.08 E-value=1.1e-10 Score=69.83 Aligned_cols=56 Identities=20% Similarity=0.373 Sum_probs=44.3
Q ss_pred cCCeEEEEE-----Ec------CCCe-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIA-----ET------PDGK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~-----~~------~~~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..++||.+. .. ..+. | +.++|||+++| |++||+|++|||+++.+++ +.++..+++.
T Consensus 19 ~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 89 (108)
T 1q7x_A 19 DNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGAT-HKQAVETLRN 89 (108)
T ss_dssp SCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCT-TSHHHHHHHH
T ss_pred CCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 578899886 21 1232 2 46899999999 9999999999999999776 7788887754
No 138
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=99.08 E-value=4.5e-10 Score=65.72 Aligned_cols=56 Identities=23% Similarity=0.289 Sum_probs=44.5
Q ss_pred eccCCeEEEEEEcCC-----------CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 9 IDLKGYCIIIAETPD-----------GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 9 ~~~~g~~i~l~~~~~-----------~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
.+-.++||.+....+ +.+ +.++|||++ ||++||+|++|||+++.+++ +.+++..++
T Consensus 10 ~~~~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~-~~~~~~~~~ 79 (95)
T 1mfg_A 10 EKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIE-HGQAVSLLK 79 (95)
T ss_dssp ECSSSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCB-HHHHHHHHH
T ss_pred CCCCCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCC-HHHHHHHhh
Confidence 345588898876331 232 468999999 99999999999999999988 778877765
No 139
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.08 E-value=2.4e-10 Score=70.82 Aligned_cols=40 Identities=38% Similarity=0.633 Sum_probs=36.2
Q ss_pred EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 27 KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 27 v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+||||+++| |++||+|++|||+++.+++ .+++.++|+.
T Consensus 66 V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~ 106 (123)
T 2iwq_A 66 VLEDSPAGKNGTLKPGDRIVEVDGMDLRDAS-HEQAVEAIRK 106 (123)
T ss_dssp ECSSSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred ECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 45899999999 9999999999999999987 8899988864
No 140
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.07 E-value=2.9e-10 Score=72.53 Aligned_cols=56 Identities=23% Similarity=0.343 Sum_probs=46.1
Q ss_pred cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +.+ +.+||||+++| |++||+|++|||+++.+|+ +.++...++.
T Consensus 15 ~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 82 (196)
T 3gsl_A 15 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVT-HSAAVEALKE 82 (196)
T ss_dssp TTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred CCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 6789998877543 222 46899999999 9999999999999999999 7777776654
No 141
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=99.07 E-value=3.4e-10 Score=67.47 Aligned_cols=53 Identities=28% Similarity=0.411 Sum_probs=41.5
Q ss_pred cCCeEEEEEEcCC---------CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960 11 LKGYCIIIAETPD---------GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65 (69)
Q Consensus 11 ~~g~~i~l~~~~~---------~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i 65 (69)
..|+||.+....+ +.+ +.+||||+ +||++||+|++|||+++.+++ ..+....+
T Consensus 18 ~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~-~~~~~~~~ 82 (107)
T 2h2b_A 18 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVE-HAFAVQQL 82 (107)
T ss_dssp TTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCC-HHHHHHHH
T ss_pred CCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCcc-HHHHHHHh
Confidence 4789999986543 222 46899999 999999999999999999998 54444444
No 142
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.07 E-value=9.6e-11 Score=70.56 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=49.2
Q ss_pred ceEec--cCCeEEEEEEcCC------------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID--LKGYCIIIAETPD------------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~--~~g~~i~l~~~~~------------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+.+ ..++||.+....+ +.+ +.+++||+++| |++||+|++|||+++.+++ ++++..+++.
T Consensus 13 v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~-~~~~~~~l~~ 91 (111)
T 1uju_A 13 LCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLT-HGEAVQLLRS 91 (111)
T ss_dssp EEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSC-HHHHHHHHSS
T ss_pred EEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 34444 4789999976542 222 46899999999 9999999999999999888 8899998865
No 143
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=99.06 E-value=2.7e-10 Score=74.57 Aligned_cols=56 Identities=30% Similarity=0.507 Sum_probs=46.1
Q ss_pred cCCeEEEEEEcCC---CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD---GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~---~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +.+ +.+||||+++||++||+|++|||+++.+++ +++++..++.
T Consensus 95 ~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~-~~~~~~~l~~ 156 (192)
T 3k1r_A 95 PEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCT-HEEVINLIRT 156 (192)
T ss_dssp TTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCC-HHHHHHHHTS
T ss_pred CCceeEEEEcccccCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHcC
Confidence 4788998865432 222 468999999999999999999999999988 8899988864
No 144
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=99.06 E-value=3.2e-10 Score=68.39 Aligned_cols=55 Identities=35% Similarity=0.488 Sum_probs=44.8
Q ss_pred cCCeEEEEEEcCC---CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 11 LKGYCIIIAETPD---GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 11 ~~g~~i~l~~~~~---~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
..|+||.+....+ +.+ +.+++||+++||++||+|++|||+++.+|+ +.++..+++
T Consensus 26 ~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~-~~~~~~~~~ 86 (114)
T 1x5n_A 26 SRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLD-HKEAVNVLK 86 (114)
T ss_dssp SCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCC-TTHHHHHHH
T ss_pred CCceeEEEeecCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHh
Confidence 6788999876432 333 458999999999999999999999999998 777777664
No 145
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.05 E-value=4.1e-10 Score=71.09 Aligned_cols=40 Identities=30% Similarity=0.506 Sum_probs=36.6
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+||||+++||++||+|++|||+++.+++ ++++.++|+.
T Consensus 71 V~~~spA~~aGL~~GD~I~~vng~~v~~~~-~~~~~~~l~~ 110 (139)
T 2vz5_A 71 VSEGGPAEIAGLQIGDKIMQVNGWDMTMVT-HDQARKRLTK 110 (139)
T ss_dssp ECTTSHHHHHTCCTTCEEEEETTEECTTCC-HHHHHHHHCC
T ss_pred ECCCCHHHHCCCCCCCEEEEECCEEcCCCC-HHHHHHHHHh
Confidence 468999999999999999999999999887 8899998875
No 146
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.05 E-value=5.5e-10 Score=68.79 Aligned_cols=55 Identities=33% Similarity=0.531 Sum_probs=43.6
Q ss_pred CCeEEEEEEcCC---CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 12 KGYCIIIAETPD---GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 12 ~g~~i~l~~~~~---~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.++||.+..... +.+ +.+||||+++||++||+|++|||+++.+++ ..++++.++.
T Consensus 32 ~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 92 (128)
T 1uf1_A 32 RSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNIL-HDEAVRLLKS 92 (128)
T ss_dssp CCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCC-HHHHHHHHTT
T ss_pred CccCEEEECcccCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence 467777755322 333 468999999999999999999999999998 6888887754
No 147
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.05 E-value=2.6e-10 Score=70.18 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=43.3
Q ss_pred cCCeEEEEEEcCC-----CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD-----GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~-----~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.++||.+....+ +.+ +.+++||+++| |++||+|++|||+++.++. ++.++|+.
T Consensus 31 ~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~---~~~~~l~~ 93 (124)
T 1wh1_A 31 QDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE---EAVALLTS 93 (124)
T ss_dssp TCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHH---HHHHHHTC
T ss_pred CCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCHH---HHHHHHHh
Confidence 5578888876652 333 45899999999 9999999999999999766 77777754
No 148
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=99.04 E-value=1.3e-10 Score=71.46 Aligned_cols=56 Identities=23% Similarity=0.400 Sum_probs=46.6
Q ss_pred cCCeEEEEEEcCC--CeE---EecCChHhhcCC-CCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD--GKV---KLYGSPADKSDL-EIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~--~~i---v~~gspA~~aGL-k~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.|+||.+....+ +.+ +.+||||+++|| ++||+|++|||+++.+++ ++++.++++.
T Consensus 19 ~~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 80 (127)
T 1b8q_A 19 VGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLS-YDSALEVLRG 80 (127)
T ss_dssp TSCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSC-HHHHHHHHHS
T ss_pred CCcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 5789999877654 233 458999999998 999999999999999977 7799888864
No 149
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.03 E-value=6.5e-10 Score=80.41 Aligned_cols=61 Identities=30% Similarity=0.352 Sum_probs=50.8
Q ss_pred ceEeccCCeEEEEEEcCCCeE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMIDLKGYCIIIAETPDGKV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~~~g~~i~l~~~~~~~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+.+..|+||.+....+..+ +.+||||+++||++||+|++|||+++.+++ +++++.+|+.
T Consensus 13 v~~~k~~~lG~~i~gg~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~-~~e~~~~l~~ 77 (391)
T 3tsz_A 13 VKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNII-REEAVLFLLD 77 (391)
T ss_dssp EEEECCSSCCEEEEEETTTEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred EEeecCCceeEEEEecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 445566789999877555543 468999999999999999999999999988 9999998863
No 150
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=99.02 E-value=4.9e-10 Score=63.11 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=35.4
Q ss_pred EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 27 KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 27 v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.++|||+++| |++||+|++|||+++.+++ ++++.++++.
T Consensus 28 v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 68 (81)
T 2rcz_A 28 ISQDSLAARDGNIQEGDVVLKINGTVTENMS-LTDAKTLIER 68 (81)
T ss_dssp ECTTSHHHHHSSCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred ECCCChHHHCCCCCCCCEEEEECCEECCCCC-HHHHHHHHHC
Confidence 45899999999 9999999999999999776 7788888764
No 151
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=99.01 E-value=6.9e-10 Score=64.19 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=35.3
Q ss_pred EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 27 KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 27 v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+||||+++| |++||+|++|||+++.+++ ++++.++++.
T Consensus 30 v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 70 (92)
T 3cyy_A 30 ISQDSLAARDGNIQEGDVVLKINGTVTENMS-LTDAKTLIER 70 (92)
T ss_dssp ECTTCHHHHSCCCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred ECCCChHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 46899999999 9999999999999999766 7788888764
No 152
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=99.01 E-value=8.8e-10 Score=71.64 Aligned_cols=56 Identities=27% Similarity=0.362 Sum_probs=46.6
Q ss_pred cCCeEEEEEEcCC---Ce-E--EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD---GK-V--KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~---~~-i--v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +. | +.+||||+++ ||++||+|++|||+++.+|+ ++++..+++.
T Consensus 18 ~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 80 (200)
T 2qt5_A 18 GTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFR-HDEIISLLKN 80 (200)
T ss_dssp TCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSC-HHHHHHHHHT
T ss_pred CCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 6789999876533 22 3 5689999999 99999999999999999998 8899887764
No 153
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=99.00 E-value=1.6e-09 Score=69.13 Aligned_cols=57 Identities=30% Similarity=0.438 Sum_probs=45.3
Q ss_pred cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcCC
Q psy16960 11 LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68 (69)
Q Consensus 11 ~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~~ 68 (69)
..++|+.+..... +.+ +.+||||+++| |++||+|++|||+++.+++ ++++++.++..
T Consensus 110 ~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~~ 178 (196)
T 3gsl_A 110 PKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVM-HEDAVAALKNT 178 (196)
T ss_dssp TTBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCB-HHHHHHHHHSC
T ss_pred CCCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCC-HHHHHHHHHcC
Confidence 4577777765432 222 46899999999 9999999999999999977 88999988653
No 154
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.99 E-value=3.6e-10 Score=67.18 Aligned_cols=36 Identities=22% Similarity=0.184 Sum_probs=31.9
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i 65 (69)
+.++|||+++||++||+|++|||+++.+|+ ++...+
T Consensus 9 V~~~spA~~aGl~~GD~I~~ing~~v~~~~---d~~~~l 44 (95)
T 3id1_A 9 IAANSIAAEAQIAPGTELKAVDGIETPDWD---AVRLQL 44 (95)
T ss_dssp ECTTSHHHHTTCCTTCEEEEETTEECSSHH---HHHHHH
T ss_pred eCCCCHHHHcCCCCCCEEEEECCEECCCHH---HHHHHH
Confidence 578999999999999999999999999998 555544
No 155
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.99 E-value=1e-09 Score=71.20 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=45.7
Q ss_pred cCCeEEEEEEcCC-----CeE---EecCChHhhcC-CCCCCEEEEECCEEeCC--CCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD-----GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKD--NCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~-----~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~--~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +.+ +.+||||+++| |+.||+|++|||+++.+ ++ +.++...++.
T Consensus 28 ~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~-~~~~~~~~~~ 94 (206)
T 3r0h_A 28 KKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMT-TLKVHQLFHT 94 (206)
T ss_dssp TSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSC-HHHHHHHHHS
T ss_pred CCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccC-HHHHHHHHHh
Confidence 7889998876433 222 46899999998 99999999999999999 66 7788877764
No 156
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=98.97 E-value=9.3e-10 Score=71.01 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=43.6
Q ss_pred CCeEEEEEEcCC-----------CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 12 KGYCIIIAETPD-----------GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 12 ~g~~i~l~~~~~-----------~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.|+||.+....+ +.+ +.+|+||++ ||++||+|++|||+++.+.. +.+++..++.
T Consensus 2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~-~~~~~~~~~~ 69 (195)
T 2qbw_A 2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIE-HGQAVSLLKT 69 (195)
T ss_dssp CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 467777776432 222 468999999 99999999999999999998 8899888754
No 157
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=98.51 E-value=6.5e-11 Score=72.47 Aligned_cols=56 Identities=34% Similarity=0.539 Sum_probs=44.7
Q ss_pred cCCeEEEEEEcCC---CeE---EecCChHhh-cCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD---GKV---KLYGSPADK-SDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~---~~i---v~~gspA~~-aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +.+ +.+||||++ +||++||+|++|||+++.+.+ .+++..+++.
T Consensus 38 ~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~-~~~~~~~l~~ 100 (112)
T 2lob_A 38 HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK-HKEAVTILSQ 100 (112)
Confidence 4688888865432 222 468999999 999999999999999998877 7788888764
No 158
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=98.96 E-value=1.5e-09 Score=80.67 Aligned_cols=61 Identities=30% Similarity=0.352 Sum_probs=51.4
Q ss_pred ceEeccCCeEEEEEEcCCCeE----EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMIDLKGYCIIIAETPDGKV----KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~~~g~~i~l~~~~~~~i----v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+.+..++||.+...++..+ +.+||||+++||++||+|++|||+++.+++ +++++.+|+.
T Consensus 5 V~l~k~~~lG~~i~gg~~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t-~~e~~~~L~~ 69 (468)
T 3shw_A 5 VKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNII-REEAVLFLLD 69 (468)
T ss_dssp EEEECCSSCCEEEEEETTTEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCC-HHHHHHHHHH
T ss_pred EEEecCCccceEEEccCcCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 456667889998876655443 468999999999999999999999999988 9999998864
No 159
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.95 E-value=6.9e-10 Score=66.13 Aligned_cols=36 Identities=39% Similarity=0.521 Sum_probs=30.4
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
+.++|||++ ||++||+|++|||+++.+|+ ++...+.
T Consensus 14 V~~~spA~~-GL~~GD~I~~Ing~~v~~~~---dl~~~l~ 49 (100)
T 3i18_A 14 VKDDVPAAD-VLHAGDLITEIDGNAFKSSQ---EFIDYIH 49 (100)
T ss_dssp ECTTSGGGG-TCCTTCEEEEETTBCCSSHH---HHHHHHH
T ss_pred eCCCCchHH-CCCCCCEEEEECCEECCCHH---HHHHHHH
Confidence 368999996 99999999999999999988 5555543
No 160
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.95 E-value=9.2e-10 Score=71.61 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=45.5
Q ss_pred cCCeEEEEEEcCC-------Ce-E--EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD-------GK-V--KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~-------~~-i--v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +. | +.+||||++|| |++||+|++|||+++.+.+ ++++.++|+.
T Consensus 17 ~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~l~~ 83 (196)
T 1p1d_A 17 VTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDST-FEEANQLLRD 83 (196)
T ss_dssp TTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSC-HHHHHHHHHT
T ss_pred CCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 5899999987522 12 2 45899999999 9999999999999999766 6688888764
No 161
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.94 E-value=6.5e-10 Score=68.70 Aligned_cols=39 Identities=31% Similarity=0.418 Sum_probs=35.0
Q ss_pred ec--CChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 28 LY--GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 28 ~~--gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.+ ++||+++||++||+|++|||+++.+|. ++++..+|+.
T Consensus 52 ~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~-~~dl~~~l~~ 92 (118)
T 2yub_A 52 NRMHISPNNRNAIHPGDRILEINGTPVRTLR-VEEVEDAIKQ 92 (118)
T ss_dssp CTTTSCTTHHHHCCTTCCEEEESSSBTTTSC-HHHHHHHHHC
T ss_pred cCCCCChHHHcCCCCCCEEEEECCEECCCcC-HHHHHHHHHh
Confidence 46 999999999999999999999999996 7788887764
No 162
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=98.94 E-value=6.9e-10 Score=77.29 Aligned_cols=56 Identities=29% Similarity=0.475 Sum_probs=47.2
Q ss_pred cCCeEEEEEEcCCC--eE----EecCChHhh-cCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPDG--KV----KLYGSPADK-SDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~~--~i----v~~gspA~~-aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+. .+ +.+|+||++ +||++||+|++|||+++.+++ +++++.+|+.
T Consensus 88 ~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t-~~e~v~~l~~ 150 (263)
T 1z87_A 88 AGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSAT-HDEAVQALKK 150 (263)
T ss_dssp TCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSC-HHHHHHHHHH
T ss_pred CCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcC-HHHHHHHHhc
Confidence 47899998776432 22 358999999 799999999999999999998 9999998864
No 163
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.94 E-value=7.4e-10 Score=67.30 Aligned_cols=55 Identities=29% Similarity=0.480 Sum_probs=44.8
Q ss_pred cCCeEEEEEEcCC---------CeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD---------GKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~---------~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..|+||.+....+ +.+ +.+++||+ +||++||+|++|||+++.+++ +++++..++.
T Consensus 25 ~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~-~~~~~~~l~~ 91 (117)
T 2csj_A 25 KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVL-HSFAVQQLRK 91 (117)
T ss_dssp SSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCC-HHHHHHHHHH
T ss_pred CCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcC-HHHHHHHHhc
Confidence 3799999876533 122 46899997 999999999999999999998 8888887753
No 164
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.93 E-value=8.7e-10 Score=63.89 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=32.0
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
+.++|||+++||++||+|++|||+++.+|+ ++...+.
T Consensus 11 v~~~spA~~aGl~~GD~I~~ing~~v~~~~---~~~~~l~ 47 (91)
T 2zpm_A 11 VQPNSAASXAGLQAGDRIVXVDGQPLTQWV---TFVMLVR 47 (91)
T ss_dssp ECTTSHHHHTTCCTTCEEEEETTEECCCHH---HHHHHHH
T ss_pred ECCCChHHhcCCCCCCEEEEECCeEcCCHH---HHHHHHh
Confidence 468999999999999999999999999888 6655543
No 165
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.8e-10 Score=68.13 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=41.7
Q ss_pred CCeEEEEEEcCCCe-E--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 12 KGYCIIIAETPDGK-V--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 12 ~g~~i~l~~~~~~~-i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
.+|||.+.. ..+. | +.+|+||+ +||++||+|++|||+++.+.+ +.++..+++
T Consensus 21 ~~~G~~l~~-~~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~-~~~~~~~~~ 75 (96)
T 2edv_A 21 QDYGFHISE-SLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLS-WERAVDILR 75 (96)
T ss_dssp CSCSBCCCS-SSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCC-HHHHHHHHH
T ss_pred CcccEEEec-CCCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 477877754 2222 2 46899996 999999999999999999987 888888775
No 166
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=98.91 E-value=3e-09 Score=76.00 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=46.2
Q ss_pred cCCeEEEEEEc---CCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAET---PDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~---~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.|+|+.+... ..+.+ +.+||||+++||++||+|++|||+++.+|. .+++..+|++
T Consensus 84 ~~giG~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~-~~~~~~~l~~ 145 (388)
T 1fc6_A 84 VTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMS-LYDVSDLLQG 145 (388)
T ss_dssp CBBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCC-HHHHHHHHCB
T ss_pred eEEEEEEEEEeecCCCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHhc
Confidence 56788888765 23332 468999999999999999999999999997 8899888864
No 167
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=2.1e-09 Score=63.78 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=41.2
Q ss_pred CCeEEEEEEcCC-C-eE----EecCChHhhc-CCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 12 KGYCIIIAETPD-G-KV----KLYGSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 12 ~g~~i~l~~~~~-~-~i----v~~gspA~~a-GLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
.++||.+....+ . .+ +.++|||+++ ||++||+|++|||+++.++ ++++..+++.
T Consensus 21 ~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~--~~~~~~~~~~ 81 (100)
T 2edp_A 21 APWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS--RQEALILIKG 81 (100)
T ss_dssp SCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC--SHHHHHHHHT
T ss_pred CCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch--HHHHHHHHHh
Confidence 477777765332 1 22 3589999999 9999999999999999985 4577777654
No 168
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.83 E-value=1.3e-09 Score=78.45 Aligned_cols=56 Identities=25% Similarity=0.373 Sum_probs=44.4
Q ss_pred cCCeEEEEEEcCCC-----eE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPDG-----KV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~~-----~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..++||.+.....+ .+ +.+||||+++| |++||+|++|||+++.+|+ ++++..+++.
T Consensus 215 ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~-~~~~~~~l~~ 279 (388)
T 3suz_A 215 GEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLP-LATCQGIIKG 279 (388)
T ss_dssp SCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCC-STTHHHHTTT
T ss_pred CCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCC-HHHHHHHHHh
Confidence 45777777654433 22 46899999999 9999999999999999998 8888888865
No 169
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.82 E-value=8.8e-09 Score=78.76 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=49.6
Q ss_pred ceEec-cCCeEEEEEEcCC--------CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 6 SHMID-LKGYCIIIAETPD--------GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 6 ~~~~~-~~g~~i~l~~~~~--------~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+.+ ..|+||.+....+ +.+ +.+|+||+++| |+.||+|++|||+++.+++ +++++.+++.
T Consensus 63 v~l~k~~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~ 136 (721)
T 2xkx_A 63 ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVT-HSAAVEALKE 136 (721)
T ss_pred EEEEeCCCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHhhc
Confidence 34444 6799999986432 122 46899999999 9999999999999999999 9999988864
No 170
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.81 E-value=3.5e-09 Score=63.70 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=31.6
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
+.++|||+++||++||+|++|||+++.++. ++...++
T Consensus 42 V~~~spA~~aGl~~GD~I~~ing~~v~~~~---~~~~~l~ 78 (113)
T 2pzd_A 42 VILGSPAHRAGLRPGDVILAIGEQMVQNAE---DVYEAVR 78 (113)
T ss_dssp EBTTSHHHHHTCCTTCEEEEETTEECCSHH---HHHHHHH
T ss_pred eCCCChHHHcCCCCCCEEEEECCEECCCHH---HHHHHHh
Confidence 458999999999999999999999999766 6666553
No 171
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.80 E-value=4.3e-09 Score=61.14 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=27.9
Q ss_pred CChHhhcCCCCCCEEEEECCEEeCCCCChHHHHH
Q psy16960 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVIT 63 (69)
Q Consensus 30 gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~ 63 (69)
+|||+++||++||+|++|||+++.+|.++.+++.
T Consensus 29 ~s~A~~aGl~~GD~I~~ing~~v~~~~d~~~~~~ 62 (87)
T 2i6v_A 29 PVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQ 62 (87)
T ss_dssp HHHHHHTTCCTTCEEEEETTEETTCHHHHHHHHH
T ss_pred CCHHHHCCCCCCCEEEEECCEECCCHHHHHHHHH
Confidence 4456999999999999999999999984444444
No 172
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.79 E-value=1.7e-09 Score=64.07 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=32.1
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.++|||++ ||++||+|++|||+++.+++ ++..+|+.
T Consensus 8 V~~~spA~~-GL~~GD~I~~InG~~v~~~~---~l~~~l~~ 44 (91)
T 2kjp_A 8 VVENMPAKG-KIEVGDKIISADGKNYQSAE---KLIDYISS 44 (91)
T ss_dssp CCCSSCCSS-CCCSSCEEEEETTBCCSSHH---HHHHHHSS
T ss_pred ECCCChHHH-cCCCCCEEEEECCEECCCHH---HHHHHHHc
Confidence 468999999 99999999999999999887 77776654
No 173
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.76 E-value=6.1e-09 Score=62.63 Aligned_cols=36 Identities=28% Similarity=0.501 Sum_probs=31.0
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i 65 (69)
+.++|||+++||++||+|++|||+++.++. ++...+
T Consensus 42 V~~~spA~~aGl~~GD~I~~ing~~v~~~~---~~~~~l 77 (112)
T 2p3w_A 42 VAPNSPSQRGGIQDGDIIVKVNGRPLVDSS---ELQEAV 77 (112)
T ss_dssp ECTTSHHHHHTCCTTCEEEEETTEECCSHH---HHHHHH
T ss_pred ECCCChHHHCCCCCCCEEEEECCEECCCHH---HHHHHH
Confidence 357999999999999999999999999887 555544
No 174
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.74 E-value=9e-09 Score=61.70 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=28.0
Q ss_pred CChHhhcCCCCCCEEEEECCEEeCCCCChHHHHH
Q psy16960 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVIT 63 (69)
Q Consensus 30 gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~ 63 (69)
+|||+++||++||+|++|||+++.+|.++.+++.
T Consensus 47 as~A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~ 80 (105)
T 2i4s_A 47 PVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQ 80 (105)
T ss_dssp THHHHHHTCCTTCEEEEETTEETTSTTHHHHHHH
T ss_pred CCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHH
Confidence 3455999999999999999999999995544444
No 175
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=98.73 E-value=5.9e-09 Score=65.19 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=30.2
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i 65 (69)
+.+||||+ +||++||+|++|||+++.+|+ ++...+
T Consensus 64 V~~~spA~-aGL~~GD~I~~inG~~v~~~~---~l~~~l 98 (134)
T 2l97_A 64 VQSNMPAN-GHLEKYDVITKVDDKEIASST---DLQSAL 98 (134)
T ss_dssp CSTTSGGG-TTSCSSCEEEEETTEECCCHH---HHHHHH
T ss_pred ECCCCchH-HCCCCCCEEEEECCEEcCCHH---HHHHHH
Confidence 35899999 999999999999999999988 555544
No 176
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.71 E-value=1.8e-08 Score=65.46 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=42.4
Q ss_pred cCCeEEEEEEc-----CCCeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 11 LKGYCIIIAET-----PDGKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 11 ~~g~~i~l~~~-----~~~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
..++|+.+... ..+.+ +.+||||+++| |++||+|++|||+++.+++ ++++.++|+
T Consensus 118 ~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~l~ 181 (196)
T 1p1d_A 118 SVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCS-MEDAVQILQ 181 (196)
T ss_dssp SCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCC-HHHHHHHHH
T ss_pred CCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCC-HHHHHHHHH
Confidence 34567766553 22323 35899999999 9999999999999999966 778888775
No 177
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.68 E-value=2.5e-08 Score=64.72 Aligned_cols=40 Identities=28% Similarity=0.527 Sum_probs=35.8
Q ss_pred EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 27 KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 27 v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.++|||+++| |++||+|++|||+++.+++ ++++.++|+.
T Consensus 142 v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~-~~~~~~~l~~ 182 (200)
T 2qt5_A 142 VRPGGPADREGTIKPGDRLLSVDGIRLLGTT-HAEAMSILKQ 182 (200)
T ss_dssp ECTTSHHHHHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHT
T ss_pred ECCCChHHHcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHc
Confidence 45899999999 9999999999999999777 7799988864
No 178
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=98.67 E-value=2.4e-08 Score=72.72 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=38.6
Q ss_pred cCCeEEEEEEcCCC---e---E--EecCChHhhcCCCCCCEEEEECCEEeCCCC
Q psy16960 11 LKGYCIIIAETPDG---K---V--KLYGSPADKSDLEIGDEILEVNGKTFKDNC 56 (69)
Q Consensus 11 ~~g~~i~l~~~~~~---~---i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~ 56 (69)
..|+++.+....++ . | +.+||||++|||++||+|++|||+++.+|+
T Consensus 73 ~~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~ 126 (403)
T 3k50_A 73 SYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV 126 (403)
T ss_dssp BCSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT
T ss_pred ccceEEEEEEcCCCCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh
Confidence 67888888776542 1 2 468999999999999999999999999986
No 179
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.65 E-value=7e-09 Score=61.31 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=30.5
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
+.++|||++ ||++||+|++|||+++.+++ ++..+++
T Consensus 12 V~~~spA~~-GL~~GD~Il~InG~~v~~~~---~l~~~l~ 47 (94)
T 2kl1_A 12 VLPNMPAAG-RLEAGDRIAAIDGQPINTSE---QIVSYVR 47 (94)
T ss_dssp CCTTSTTBT-TBCTTCEEEEETTBCCCCHH---HHHHHHH
T ss_pred ECCCChHHh-CCCCCCEEEEECCEECCCHH---HHHHHHH
Confidence 358999999 99999999999999999887 5555553
No 180
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.63 E-value=2.5e-08 Score=65.95 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=29.0
Q ss_pred EecCChHhhcCCCCC-CEEEEECCEEeCCCCC
Q psy16960 27 KLYGSPADKSDLEIG-DEILEVNGKTFKDNCN 57 (69)
Q Consensus 27 v~~gspA~~aGLk~G-D~Il~Vng~~i~~~~~ 57 (69)
+.++|||++|||++| |+|++|||+++.+|++
T Consensus 23 V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~ 54 (209)
T 3rle_A 23 VQENSPGHRAGLEPFFDFIVSINGSRLNKDND 54 (209)
T ss_dssp ECTTSHHHHTTCCTTTEEEEEETTEECCSSSS
T ss_pred ECCCCHHHHCCCCcCCeEEEEECCEECcCHHH
Confidence 468999999999999 9999999999999984
No 181
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.58 E-value=8.7e-08 Score=60.86 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=39.8
Q ss_pred CCeEEEEEEcCCCeE--EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 12 KGYCIIIAETPDGKV--KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 12 ~g~~i~l~~~~~~~i--v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
..+|+.+. .+.+ +.+++||+++||++||+|++|||+++.+|. .+++...++
T Consensus 100 ~~lG~~~~---~g~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~-~~~v~~~v~ 152 (166)
T 1w9e_A 100 GHVGFIFK---NGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLK-DSQIADILS 152 (166)
T ss_dssp SCCSEEEE---TTEEEEECTTSHHHHTTCCSSEEEEEETTEECTTCC-HHHHHHHHH
T ss_pred CcEeEEEe---CCEEEEEccCCHHHHcCCCCCCEEEEECCEECCCCC-hHHHHHHHh
Confidence 44555554 2343 468999999999999999999999999998 887766553
No 182
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.57 E-value=2.9e-08 Score=70.40 Aligned_cols=37 Identities=32% Similarity=0.450 Sum_probs=32.3
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
+.+||||++|||++||+|++|||+++.++. ++...|.
T Consensus 270 V~~~spA~~aGL~~GDvI~~ing~~v~~~~---~l~~~l~ 306 (345)
T 3stj_A 270 VLPGSGSAKAGVKAGDIITSLNGKPLNSFA---ELRSRIA 306 (345)
T ss_dssp ECTTSHHHHHTCCTTCEECEETTEECSCHH---HHHHHHH
T ss_pred eccCChHHHcCCCCCCEEEEECCEECCCHH---HHHHHHH
Confidence 468999999999999999999999999888 6665554
No 183
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.56 E-value=1.6e-07 Score=71.88 Aligned_cols=56 Identities=34% Similarity=0.523 Sum_probs=45.9
Q ss_pred cCCeEEEEEEcCC--CeE---EecCChHhhcC-CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPD--GKV---KLYGSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~--~~i---v~~gspA~~aG-Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
..++||.+....+ +.+ +.+||||+++| |++||+|++|||+++.+.+ +++++++|+.
T Consensus 317 ~~~lG~~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~-~~e~~~~l~~ 378 (721)
T 2xkx_A 317 STGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS-HEQAAIALKN 378 (721)
T ss_pred CCCccEEEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 4678888765432 333 46899999999 9999999999999999988 8899998864
No 184
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.56 E-value=4.8e-08 Score=68.30 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=32.5
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
+.+||||+++||++||+|++|||+++.+++ ++.+.++
T Consensus 263 V~~~spA~~aGl~~GDvI~~ing~~v~~~~---~l~~~l~ 299 (325)
T 1lcy_A 263 VILGSPAHRAGLRPGDVILAIGEQMVQNAE---DVYEAVR 299 (325)
T ss_dssp ECTTSHHHHHTCCTTCEEEEETTEECCSHH---HHHHHHT
T ss_pred eCcCChHHHCCCCCCCEEEEECCEEcCCHH---HHHHHHh
Confidence 458999999999999999999999999887 6666654
No 185
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.55 E-value=5.9e-08 Score=60.48 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=31.1
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
+.+++||+++ |++||+|++|||+++.+|+ ++...++
T Consensus 32 V~~~spA~~a-L~~GD~Il~InG~~v~~~~---dl~~~l~ 67 (125)
T 2hga_A 32 VVPGSPASKV-LTPGLVIESINGMPTSNLT---TYSAALK 67 (125)
T ss_dssp ECSSSGGGGT-SCTTCEEEEETTEECSSHH---HHHHHHT
T ss_pred ECCCChHHHh-cCCCCEEEEECCEEcCCHH---HHHHHHH
Confidence 3589999999 9999999999999999988 5655554
No 186
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.55 E-value=3.8e-08 Score=68.37 Aligned_cols=36 Identities=11% Similarity=0.265 Sum_probs=31.7
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i 65 (69)
+.+||||+++|||+||+|++|||+++.+|. ++...+
T Consensus 249 v~~~spA~~aGl~~GD~I~~ing~~v~~~~---~l~~~l 284 (324)
T 1y8t_A 249 VVAGGAAANAGVPKGVVVTKVDDRPINSAD---ALVAAV 284 (324)
T ss_dssp ECTTSTTTTTTCCTTCEEEEETTEECCSHH---HHHHHH
T ss_pred ECCCChHHHcCCCCCCEEEEECCEECCCHH---HHHHHH
Confidence 468999999999999999999999999988 555555
No 187
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.55 E-value=3.1e-08 Score=68.87 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=32.3
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
+.++|||+++||++||+|++|||+++.++. ++..+|+
T Consensus 251 V~~~spA~~aGL~~GD~I~~ing~~v~~~~---~l~~~l~ 287 (318)
T 1te0_A 251 VSPDGPAANAGIQVNDLIISVDNKPAISAL---ETMDQVA 287 (318)
T ss_dssp ECTTSTTTTTCCCTTCCEEEETTEECCCHH---HHHHHHH
T ss_pred eCCCChHHHCCCCCCCEEEEECCEEcCCHH---HHHHHHH
Confidence 468999999999999999999999999887 6666554
No 188
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.47 E-value=1.9e-07 Score=70.65 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=37.1
Q ss_pred CeEEEEEEcCCCeE---EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHH
Q psy16960 13 GYCIIIAETPDGKV---KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVIT 63 (69)
Q Consensus 13 g~~i~l~~~~~~~i---v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~ 63 (69)
+.|+.+....++.+ |.+||||++|||++||+|++|||+++. +.++.+++.
T Consensus 486 ~lG~~~~~~~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~-~~~l~~~l~ 538 (597)
T 4fgm_A 486 NFGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQAT-EQSVKRILE 538 (597)
T ss_dssp CCSEEEEEETTEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC-TTTHHHHHT
T ss_pred ccceEEeccCCeEEEEEeCCCChHHHCCCCCCCEEEEECCEECC-HHHHHHHHH
Confidence 55666655433332 468999999999999999999999994 663555554
No 189
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.45 E-value=2.2e-08 Score=71.99 Aligned_cols=40 Identities=20% Similarity=0.572 Sum_probs=0.0
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+||||+++||++||+|++|||+++.+++ ++++++.++.
T Consensus 322 V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s-~~~~~~~l~~ 361 (388)
T 3suz_A 322 LMRGGIAERGGVRVGHRIIEINGQSVVATA-HEKIVQALSN 361 (388)
T ss_dssp -----------------------------------------
T ss_pred eecCCHHHHcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh
Confidence 468999999999999999999999999888 8899888764
No 190
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.43 E-value=1.4e-07 Score=68.44 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=33.0
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+||||+++||++||+|++|||+++.+|+ ++.++|+.
T Consensus 370 V~~~spA~~aGL~~GD~I~~vng~~v~~~~---~~~~~l~~ 407 (436)
T 4a8c_A 370 VVKGSPAAQAGLQKDDVIIGVNRDRVNSIA---EMRKVLAA 407 (436)
T ss_pred eCCCCHHHHcCCCCCCEEEEECCEECCCHH---HHHHHHHh
Confidence 458999999999999999999999999888 66666643
No 191
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.42 E-value=1.5e-07 Score=68.92 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=31.5
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i 65 (69)
+.++|||++|||++||+|++|||+++.+|+ ++...+
T Consensus 289 V~~~spA~~aGL~~GDvI~~vnG~~v~~~~---~l~~~l 324 (451)
T 3pv2_A 289 VNPNSPAELAGLKAGDIITQINDTKITQAT---QVKTTI 324 (451)
T ss_dssp ECTTSHHHHHTCCTTCEEEEETTEECCSHH---HHHHHH
T ss_pred cCCCChHHHcCCCCCCEEEEECCEEcCCHH---HHHHHH
Confidence 468999999999999999999999999998 555544
No 192
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.41 E-value=1.7e-07 Score=68.08 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=31.3
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i 65 (69)
+.+||||+++||++||+|++|||+++.+|+ ++...+
T Consensus 270 V~~~spA~~aGL~~GD~I~~vnG~~v~~~~---~l~~~l 305 (436)
T 4a8c_A 270 VLPGSGSAKAGVKAGDIITSLNGKPLNSFA---ELRSRI 305 (436)
T ss_pred ECCCChHHHCCCCCCCEEEEECCEECCCHH---HHHHHH
Confidence 468999999999999999999999999998 444444
No 193
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=98.38 E-value=1.6e-07 Score=66.15 Aligned_cols=37 Identities=27% Similarity=0.419 Sum_probs=32.5
Q ss_pred EecCChHhhcCCCC-----------CCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 27 KLYGSPADKSDLEI-----------GDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 27 v~~gspA~~aGLk~-----------GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
+.++|||++|||++ ||+|++|||+++.+|+ ++...|.
T Consensus 258 V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~~---dl~~~l~ 305 (348)
T 3qo6_A 258 APPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGS---DLYRILD 305 (348)
T ss_dssp CCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSSH---HHHHHHT
T ss_pred ecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCHH---HHHHHHH
Confidence 35899999999999 9999999999999998 6666663
No 194
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=98.37 E-value=4.3e-08 Score=68.53 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=0.0
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhh
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i 65 (69)
+.+||||+++||++||+|++|||+++.+++ ++...+
T Consensus 261 v~~~spA~~aGl~~GD~I~~ing~~v~~~~---~~~~~l 296 (332)
T 3num_A 261 VIPDTPAEAGGLKENDVIISINGQSVVSAN---DVSDVI 296 (332)
T ss_dssp ---------------------------------------
T ss_pred eccCCChHHcCCCCCCEEEEECCEECCCHH---HHHHHH
Confidence 468999999999999999999999999888 554444
No 195
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.37 E-value=2.5e-07 Score=67.66 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=33.3
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.+||||+++||++||+|++|||+++.+++ ++.+.++.
T Consensus 393 V~~gspA~~aGL~~GD~I~~Vng~~v~~~~---~~~~~l~~ 430 (451)
T 3pv2_A 393 ASENSAGWRAGIRPGDIIISANKKPVTDVK---SLQTIAQE 430 (451)
T ss_dssp ECTTSHHHHHTCCTTCEEEEETTEECCSHH---HHHHHTTS
T ss_pred ECCCCHHHHcCCCCCCEEEEECCEECCCHH---HHHHHHhc
Confidence 458999999999999999999999999887 77776654
No 196
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.34 E-value=2.3e-07 Score=61.32 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=31.4
Q ss_pred EecCChHhhcCCCC-CCEEEEECCEEeCCCCChHHHHHh
Q psy16960 27 KLYGSPADKSDLEI-GDEILEVNGKTFKDNCNHNEVITH 64 (69)
Q Consensus 27 v~~gspA~~aGLk~-GD~Il~Vng~~i~~~~~~~ev~~~ 64 (69)
+.++|||++|||++ ||+|++|||+ +.+++++.++++.
T Consensus 119 V~~~spA~~aGl~~~GD~I~~ing~-v~~~~~l~~~l~~ 156 (209)
T 3rle_A 119 VESNSPAALAGLRPHSDYIIGADTV-MNESEDLFSLIET 156 (209)
T ss_dssp ECTTSHHHHHTCCTTTEEEEEESSC-CCSSSCHHHHHHH
T ss_pred eCCCChHHHCCCCCCCCEEEECCCE-eCCHHHHHHHHHh
Confidence 46899999999999 9999999998 9999955555543
No 197
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=98.28 E-value=1e-06 Score=67.73 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=41.3
Q ss_pred cCCeEEEEEEcCCCeE---EecC--------ChHhhcC--CCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 11 LKGYCIIIAETPDGKV---KLYG--------SPADKSD--LEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 11 ~~g~~i~l~~~~~~~i---v~~g--------spA~~aG--Lk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.|+|+.+....++.+ +.+| |||+++| |+ ||+|++|||+++.++. ++..+|++
T Consensus 736 ~~g~G~~~~~~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~---~~~~~~~~ 801 (1045)
T 1k32_A 736 SGRIACDFKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS---NIYRVLSE 801 (1045)
T ss_dssp CCBCSEEEEEETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB---CHHHHHHT
T ss_pred cceecEEEEEeCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh---hHHHhhcC
Confidence 4588888876544332 3466 9999999 99 9999999999999987 66666654
No 198
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.17 E-value=3e-07 Score=67.23 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=32.6
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
+.+||||+++||++||+|++|||+++.+|. ++...+.
T Consensus 293 V~~gspA~~AGL~~GDvI~~inG~~v~~~~---~l~~~l~ 329 (448)
T 1ky9_A 293 VLPNSSAAKAGIKAGDVITSLNGKPISSFA---ALRAQVG 329 (448)
T ss_dssp CTTCSSSTTTTCCTTCEECBSSSSBCCSSH---HHHHHTT
T ss_pred eccCCHHHHcCCCCCCEEEEECCEEcCCHH---HHHHHHH
Confidence 357999999999999999999999999998 6666654
No 199
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.07 E-value=4.9e-07 Score=66.08 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=0.0
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhc
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~ 66 (69)
+.+||||+++||++||+|++|||+++.+++ ++.++++
T Consensus 390 V~~gspA~~aGL~~GDiI~~vng~~v~~~~---~l~~~l~ 426 (448)
T 1ky9_A 390 VKTGTPAAQIGLKKGDVIIGANQQAVKNIA---ELRKVLD 426 (448)
T ss_dssp ----------------------------------------
T ss_pred ecCCCHHHHcCCCCCCEEEEECCEECCCHH---HHHHHHH
Confidence 468999999999999999999999999888 5555554
No 200
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.16 E-value=0.00029 Score=53.16 Aligned_cols=29 Identities=24% Similarity=0.123 Sum_probs=25.7
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCC
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNC 56 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~ 56 (69)
+.+||||+++ ||+||.|++|||++|.+..
T Consensus 284 V~~~spA~~a-l~~GDvI~~idg~~V~~~g 312 (539)
T 4fln_A 284 VEPTSDASKV-LKEGDVIVSFDDLHVGCEG 312 (539)
T ss_dssp ECTTSGGGGT-CCTTCEEEEETTEECBSSS
T ss_pred ccCCChHHhC-ccCCCEEEEECCEEeCcCC
Confidence 4689999987 9999999999999997654
No 201
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.11 E-value=0.00028 Score=53.24 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=32.3
Q ss_pred EecCChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 27 KLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
+.++++|..+|++.||+|++|||++|.+.. ++.++|+.
T Consensus 422 V~~~s~a~~~g~~~gdiI~~vNg~~V~s~~---~l~~~l~~ 459 (539)
T 4fln_A 422 VLANEVNIGYEDMNNQQVLKFNGIPIRNIH---HLAHLIDM 459 (539)
T ss_dssp ECCCGGGTTCSSCCSEEEEEETTEECCSHH---HHHHHHHT
T ss_pred ecCCchhhhcCCCCCCEEEeECCEEcCCHH---HHHHHHHH
Confidence 357999999999999999999999999887 66666543
No 202
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=89.86 E-value=0.097 Score=40.13 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=26.1
Q ss_pred EEEEEEcCCCeEEecCChHhhcCCCCCCEEEEECCEEeCCC
Q psy16960 15 CIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDN 55 (69)
Q Consensus 15 ~i~l~~~~~~~iv~~gspA~~aGLk~GD~Il~Vng~~i~~~ 55 (69)
++.+....++++.+.+..+..++++.||+|++|||+++..|
T Consensus 87 Pf~vki~iDG~i~V~dv~~~~s~I~vGdEIlsING~pv~e~ 127 (583)
T 3dor_A 87 PYTVQKSSDGRFYFVDIMTFSSEIRVGDELLEVDGAPVQDV 127 (583)
T ss_dssp SEEEEECTTSCEEEEEECSSCCSSCTTCEEEEETTEEHHHH
T ss_pred CeEEEEEECCcEEEEeccccccCCCCCCEEEEECCccHHHH
Confidence 45555355565533222222237999999999999997644
No 203
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=82.50 E-value=1 Score=24.49 Aligned_cols=31 Identities=13% Similarity=0.012 Sum_probs=25.0
Q ss_pred EEEEEEcCCCeEEecCChHhhcCCCCCCEEE
Q psy16960 15 CIIIAETPDGKVKLYGSPADKSDLEIGDEIL 45 (69)
Q Consensus 15 ~i~l~~~~~~~iv~~gspA~~aGLk~GD~Il 45 (69)
+........++|+.|-.-.++.||++||.+.
T Consensus 13 ~~~~kv~~kGqItIPkeiR~~Lgi~~Gd~l~ 43 (59)
T 1yfb_A 13 GIVRKVDELGRVVIPIELRRTLGIAEKDALE 43 (59)
T ss_dssp CEEEECCTTCEEECCHHHHHHTTCCTTCEEE
T ss_pred eeEEEECCCCEEEeCHHHHHHcCCCCCCEEE
Confidence 3445556778899998888999999999985
No 204
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=81.57 E-value=1 Score=27.96 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=23.6
Q ss_pred cCCeEEEEEEc-----CCCeEEecCChHhhcCCCCCCEEEE
Q psy16960 11 LKGYCIIIAET-----PDGKVKLYGSPADKSDLEIGDEILE 46 (69)
Q Consensus 11 ~~g~~i~l~~~-----~~~~iv~~gspA~~aGLk~GD~Il~ 46 (69)
-.||||+.... ...-|.++-+.-.+-||+.||.|..
T Consensus 59 ~dG~GFlr~~~~~y~~~~~DiyVs~~~irrf~lr~GD~V~g 99 (130)
T 1a62_A 59 QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISG 99 (130)
T ss_dssp TTSCEEEECGGGTTCCCTTCEEECHHHHHHTTCCTTCEEEE
T ss_pred CCCeEEEecCCcCCCCCCCCEEECHHHHhHhCCCCCCEEEE
Confidence 47999999762 1223445444445559999998853
No 205
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=70.15 E-value=3.1 Score=21.64 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=21.0
Q ss_pred EcCCCeEEecCChHhhcCCCCCCEEE
Q psy16960 20 ETPDGKVKLYGSPADKSDLEIGDEIL 45 (69)
Q Consensus 20 ~~~~~~iv~~gspA~~aGLk~GD~Il 45 (69)
....++++.+-.-.++.||+.||.+.
T Consensus 8 v~~kgqi~IPk~ir~~lgi~~Gd~v~ 33 (53)
T 2l66_A 8 VSRNYQVTIPAKVRQKFQIKEGDLVK 33 (53)
T ss_dssp CCSSSCBCCCHHHHHHSCCCTTCEEE
T ss_pred ECCCCEEEeCHHHHHHcCcCCCCEEE
Confidence 34566788888888899999999886
No 206
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=55.64 E-value=7.8 Score=25.40 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=26.7
Q ss_pred eEEEEEEcCCCeEEecCChHhhcCCCCCCEEEE
Q psy16960 14 YCIIIAETPDGKVKLYGSPADKSDLEIGDEILE 46 (69)
Q Consensus 14 ~~i~l~~~~~~~iv~~gspA~~aGLk~GD~Il~ 46 (69)
.+++......++|+.|-.-.++.||++||.+.-
T Consensus 4 ~giv~kV~~kGqItIPkeiR~~LgI~~GD~l~~ 36 (178)
T 2w1t_A 4 TGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEI 36 (178)
T ss_dssp CCEEEECCTTSEEECCHHHHHHTTCCTTCEEEE
T ss_pred ccEEEEECCCceEEEcHHHHHHcCcCCCCEEEE
Confidence 346666677889999888888899999999874
No 207
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=51.88 E-value=7.5 Score=26.28 Aligned_cols=23 Identities=17% Similarity=0.559 Sum_probs=20.8
Q ss_pred HhhcCCCCCCEEEEECCEEeCCC
Q psy16960 33 ADKSDLEIGDEILEVNGKTFKDN 55 (69)
Q Consensus 33 A~~aGLk~GD~Il~Vng~~i~~~ 55 (69)
+++.|++.|..++++||.++.+.
T Consensus 52 ~~~d~~~~~~~~~~~ng~~~~~~ 74 (219)
T 2j3t_D 52 GQRDGIRVGHAVLAINGMDVNGR 74 (219)
T ss_dssp CCCTTCCTTCEEEEETTEECBTT
T ss_pred cccCCccccceeeecCCccCCCc
Confidence 56789999999999999999875
No 208
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=47.17 E-value=34 Score=21.31 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=15.1
Q ss_pred ecCChHhhcCCCCCCEEE
Q psy16960 28 LYGSPADKSDLEIGDEIL 45 (69)
Q Consensus 28 ~~gspA~~aGLk~GD~Il 45 (69)
.+.+-+++-||++||+|.
T Consensus 122 l~aG~~~~~gi~~Gd~v~ 139 (140)
T 3m7a_A 122 INGGLAARLGIKPGDKVE 139 (140)
T ss_dssp EETTHHHHHTCCTTCEEE
T ss_pred eCcChHHHcCCCCCCEEe
Confidence 367888888999999984
No 209
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=45.63 E-value=20 Score=19.38 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=20.0
Q ss_pred cCCeEEEEEEcCCCeEEecCChHh---hcCCCCCCEEE
Q psy16960 11 LKGYCIIIAETPDGKVKLYGSPAD---KSDLEIGDEIL 45 (69)
Q Consensus 11 ~~g~~i~l~~~~~~~iv~~gspA~---~aGLk~GD~Il 45 (69)
-+||||+........+..--+.-. ...|+.||++.
T Consensus 12 ~kGfGFI~~~~gg~dvFvH~s~i~~~g~~~l~~G~~V~ 49 (67)
T 3cam_A 12 AKGFGFITPDEGGEDLFAHFSAINMEGFKTLKEGQRVS 49 (67)
T ss_dssp TTTEEEEEETTSCCCEEEEGGGBCGGGGSSCCTTCEEE
T ss_pred CCCeEEEecCCCCccEEEEHHHccccCCCCCCCCCEEE
Confidence 789999985432233322111111 13599999986
No 210
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=44.41 E-value=14 Score=22.87 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=15.3
Q ss_pred ecCChHhhcCCCCCCEEE
Q psy16960 28 LYGSPADKSDLEIGDEIL 45 (69)
Q Consensus 28 ~~gspA~~aGLk~GD~Il 45 (69)
.+.+.+++.|+++||+|.
T Consensus 108 l~aG~~~~~gi~~Gd~v~ 125 (136)
T 3pjy_A 108 LNAGTVKRLGVSPGDRLE 125 (136)
T ss_dssp EETTHHHHHTCCTTCEEE
T ss_pred eCcChHHhcCCCCCCEEE
Confidence 367888888999999986
No 211
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=43.44 E-value=17 Score=21.10 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=20.3
Q ss_pred CCCeEEecCChHhhcCCCCCCEEEEE
Q psy16960 22 PDGKVKLYGSPADKSDLEIGDEILEV 47 (69)
Q Consensus 22 ~~~~iv~~gspA~~aGLk~GD~Il~V 47 (69)
..++++.|-.-.++-||++||.+.-+
T Consensus 58 ~kGqitIPkeiR~~lgi~~Gd~l~~~ 83 (92)
T 2glw_A 58 EQGSVIIPKALRDVIGIKPGEVIEVL 83 (92)
T ss_dssp GGGEEECCHHHHHHHTCCTTCEEEEE
T ss_pred cCceEECcHHHHHHcCCCCCCEEEEE
Confidence 45677777777778899999998753
No 212
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=39.87 E-value=18 Score=26.77 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=24.5
Q ss_pred cCCeEEEEEEcC-----CCeEEecCChHhhcCCCCCCEEE
Q psy16960 11 LKGYCIIIAETP-----DGKVKLYGSPADKSDLEIGDEIL 45 (69)
Q Consensus 11 ~~g~~i~l~~~~-----~~~iv~~gspA~~aGLk~GD~Il 45 (69)
..||||.-.... ++-+.+..+.-.+-||+.||.|.
T Consensus 66 ~~g~gflr~~~~~y~~~~~d~yvs~~~ir~~~lr~gd~v~ 105 (427)
T 3l0o_A 66 PEGFGFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIIS 105 (427)
T ss_dssp TTSCEEEECGGGTTCCCSSCEEECHHHHHHTTCCTTCEEE
T ss_pred CCCceEeeCCccCCCCCCCCeeeCHHHHHhcCCCCCCEEE
Confidence 479999875521 12355666777788999999775
No 213
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternar complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ...
Probab=37.47 E-value=14 Score=25.40 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=31.1
Q ss_pred ChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 31 spA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
--|+..||++|+.+..+++.-|..-. .+.+-++|.+
T Consensus 187 miA~~~gl~~G~~~h~~gdaHIY~nh-~~~v~~qL~r 222 (264)
T 2g8o_A 187 MMAQQCDLEVGDFVWTGGDTHLYSNH-MDQTHLQLSR 222 (264)
T ss_dssp HHHHHTTCEEEEEEEEEEEEEEEGGG-HHHHHHHHTS
T ss_pred HHHHHHCCeeeEEEEEEeeeEeccch-HHHHHHHhcc
Confidence 56888999999999999999999776 8888887765
No 214
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1
Probab=36.29 E-value=14 Score=25.60 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=30.7
Q ss_pred hHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 32 PADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 32 pA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
-|+..||++|+.+..+++.-|..-. ++.+-++|.+
T Consensus 189 iA~~~gl~~G~~~h~~gdaHIY~nh-~e~~~~qL~R 223 (264)
T 3qj7_A 189 MAAQAGLSVGEFIWTGGDCHIYDNH-VEQVRLQLSR 223 (264)
T ss_dssp HHHHHTCEEEEEEEEEEEEEEEGGG-HHHHHHHHTS
T ss_pred HHHhcCCeeeEEEEEEEEEEEEHHH-HHHHHHHhcC
Confidence 4788899999999999999999877 8888888865
No 215
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: UMP; 2.71A {Staphylococcus aureus}
Probab=35.08 E-value=19 Score=25.65 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=31.3
Q ss_pred ChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 31 spA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
--|+..||++|+.+-.+++--|..-. ++.+-++|.+
T Consensus 245 miAq~~Gl~~G~fih~~gdaHIY~nH-~e~~~~qL~R 280 (321)
T 4dq1_A 245 LIAKECGLEVGEFVHTFGDAHIYSNH-IDAIQTQLAR 280 (321)
T ss_dssp HHHHHTTCEEEEEEEEEEEEEEETTS-HHHHHHHHHS
T ss_pred HHHHHhCCcceEEEEEEEEEEEeHHH-HHHHHHHhCC
Confidence 34888999999999999999999887 8888888864
No 216
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=35.08 E-value=24 Score=18.86 Aligned_cols=34 Identities=29% Similarity=0.290 Sum_probs=19.2
Q ss_pred cCCeEEEEEEcCCCeEEecCChHhh---cCCCCCCEEE
Q psy16960 11 LKGYCIIIAETPDGKVKLYGSPADK---SDLEIGDEIL 45 (69)
Q Consensus 11 ~~g~~i~l~~~~~~~iv~~gspA~~---aGLk~GD~Il 45 (69)
-+|||++....- ..+..--+.-.. ..|+.||++.
T Consensus 12 ~kGfGFI~~~~g-~dvFvH~s~i~~~g~~~l~~G~~V~ 48 (66)
T 1c9o_A 12 EKGYGFIEVEGG-SDVFVHFTAIQGEGFKTLEEGQEVS 48 (66)
T ss_dssp TTTEEEEEETTE-EEEEEEGGGBCSSSCCCCCTTCEEE
T ss_pred CCCeEEEecCCC-ccEEEEHHHccccCCCCCCCCCEEE
Confidence 789999984422 233221122222 2488999976
No 217
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=34.86 E-value=56 Score=17.64 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=19.7
Q ss_pred ccCCeEEEEEEcCCCeEEecCChHhh---cCCCCCCEEE
Q psy16960 10 DLKGYCIIIAETPDGKVKLYGSPADK---SDLEIGDEIL 45 (69)
Q Consensus 10 ~~~g~~i~l~~~~~~~iv~~gspA~~---aGLk~GD~Il 45 (69)
+.+||||+........+..--+.-.. ..|+.||.+.
T Consensus 15 ~~kGfGFI~~~~g~~dvFvH~s~i~~~g~~~l~~G~~V~ 53 (71)
T 3i2z_B 15 ESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVE 53 (71)
T ss_dssp TTTTEEEEEETTCCCCEEEEGGGBCCSSCCCCCTTCEEE
T ss_pred CCCCcEEEecCCCCccEEEEhHHcccccCcCCCCCCEEE
Confidence 37899998754332234221111111 2489999875
No 218
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A*
Probab=32.88 E-value=16 Score=25.46 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=30.9
Q ss_pred ChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 31 spA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
--|+..||++|+.+..+++.-|..-. .+.+-++|.+
T Consensus 201 miA~~~gl~~G~~~h~~gdaHIY~nh-~e~v~~qL~r 236 (278)
T 1bkp_A 201 MIAQVTGYELGEYIFNIGDCHVYTRH-IDNLKIQMER 236 (278)
T ss_dssp HHHHHHTCEEEEEEEEEEEEEEEGGG-HHHHHHHHHS
T ss_pred HHHHHhCCeeEEEEEEEEeEEEcHHH-HHHHHHHhcC
Confidence 56888899999999999999999776 8888877754
No 219
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C*
Probab=32.64 E-value=19 Score=25.73 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=31.2
Q ss_pred ChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 31 spA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
--|+..||++|+.+-.+++.-|..-. .+.+-++|.+
T Consensus 251 miAq~~Gle~Gefih~igdaHIY~nh-ie~v~~qL~R 286 (328)
T 1j3k_C 251 MIAQVCNLQPAQFIHVLGNAHVYNNH-IDSLKIQLNR 286 (328)
T ss_dssp HHHHHTTCEEEEEEEEEEEEEEEGGG-HHHHHHHTTS
T ss_pred HHHHHHCCeeeEEEEEEeeeEeeHHH-HHHHHHHhcC
Confidence 56788899999999999999999777 8888888765
No 220
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=32.23 E-value=29 Score=18.95 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=19.3
Q ss_pred cCCeEEEEEEcCCCeEEecCChHhh---cCCCCCCEEE
Q psy16960 11 LKGYCIIIAETPDGKVKLYGSPADK---SDLEIGDEIL 45 (69)
Q Consensus 11 ~~g~~i~l~~~~~~~iv~~gspA~~---aGLk~GD~Il 45 (69)
-+||||+....- ..+.+--+.-.. ..|+.||++.
T Consensus 12 ~kGfGFI~~~~g-~dvFvH~s~i~~~g~~~l~~G~~V~ 48 (73)
T 3a0j_A 12 EKGYGFIEREGD-TDVFVHYTAINAKGFRTLNEGDIVT 48 (73)
T ss_dssp TTTEEEEECTTS-CCEEEEGGGBCSSSCSSCCTTCEEE
T ss_pred CCCEEEEecCCC-CcEEEEhhhccccCCCCCCCCCEEE
Confidence 789999984432 233221122222 2489999976
No 221
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=31.84 E-value=20 Score=25.20 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=30.9
Q ss_pred ChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 31 spA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
--|+..||++|+.+-.+++.-|..-. ++.+-++|.+
T Consensus 215 miA~~~gl~~G~f~h~~gdaHIY~nH-~e~~~~qL~R 250 (294)
T 3kgb_A 215 LVAHLTGLQPGEFVHFLGDAHVYLDH-VDSLRQQIQR 250 (294)
T ss_dssp HHHHHTTCEEEEEEEEEEEEEEEGGG-HHHHHHHTTS
T ss_pred HHHHHhCCeeEEEEEEEEeEEecHHH-HHHHHHHhcC
Confidence 34888899999999999999999877 8888888765
No 222
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=31.04 E-value=51 Score=20.99 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=13.2
Q ss_pred cCChHhhcCCCCCCEEEEEC
Q psy16960 29 YGSPADKSDLEIGDEILEVN 48 (69)
Q Consensus 29 ~gspA~~aGLk~GD~Il~Vn 48 (69)
-+++|++- .++||+|+=+-
T Consensus 88 lNGAAArl-~~~GD~VII~s 106 (143)
T 1pqh_A 88 VNGAAAHC-ASVGDIVIIAS 106 (143)
T ss_dssp CCGGGGGT-CCTTCEEEEEE
T ss_pred echHHHcc-CCCCCEEEEEE
Confidence 35666664 79999998543
No 223
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=30.87 E-value=28 Score=25.72 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=24.6
Q ss_pred cCCeEEEEEEcC-----CCeEEecCChHhhcCCCCCCEEEE
Q psy16960 11 LKGYCIIIAETP-----DGKVKLYGSPADKSDLEIGDEILE 46 (69)
Q Consensus 11 ~~g~~i~l~~~~-----~~~iv~~gspA~~aGLk~GD~Il~ 46 (69)
.+||||.-.... ++-+.+.-+.-.+-+|+.||.|..
T Consensus 62 ~~g~gflr~~~~~~~~~~~d~yvs~~~ir~~~lr~gd~v~g 102 (422)
T 3ice_A 62 QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISG 102 (422)
T ss_dssp TTSCEEEECGGGTTCCCTTCEEBCHHHHHHHTCCTTCEEEE
T ss_pred CCCceEeeCCCcCCCCCCCCeeeCHHHHHhcCCCCCCEEEE
Confidence 479999875321 123555556667889999999873
No 224
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=30.82 E-value=24 Score=20.19 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=14.5
Q ss_pred cCChHhhc-CCCCCCEEEEEC
Q psy16960 29 YGSPADKS-DLEIGDEILEVN 48 (69)
Q Consensus 29 ~gspA~~a-GLk~GD~Il~Vn 48 (69)
..-|+.+. |++.||.|-=+.
T Consensus 41 ~~DPvar~~G~k~GdVvkI~R 61 (77)
T 1eik_A 41 TTDPVAKAIGAKRGDIVKIIR 61 (77)
T ss_dssp TTSHHHHGGGCCTTCEEEEEE
T ss_pred CcCHhhHHhCCCCCCEEEEEE
Confidence 45677766 999999775443
No 225
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=29.94 E-value=42 Score=20.60 Aligned_cols=18 Identities=33% Similarity=0.708 Sum_probs=12.3
Q ss_pred CChHhhcCCCCCCEEEEEC
Q psy16960 30 GSPADKSDLEIGDEILEVN 48 (69)
Q Consensus 30 gspA~~aGLk~GD~Il~Vn 48 (69)
+++|++- .++||+|+=+-
T Consensus 75 NGAAAr~-~~~GD~vII~a 92 (114)
T 3oug_A 75 NGPAARR-CEIGDQLFIIS 92 (114)
T ss_dssp EGGGGGG-CCTTCEEEEEE
T ss_pred CCHHHhc-cCCCCEEEEEE
Confidence 4555554 79999998653
No 226
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; HET: MSE; 2.70A {Francisella tularensis subsp}
Probab=29.91 E-value=14 Score=27.72 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=18.1
Q ss_pred ecCChHhhcCCCCCCEEEEECCEEeCCCC
Q psy16960 28 LYGSPADKSDLEIGDEILEVNGKTFKDNC 56 (69)
Q Consensus 28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~~ 56 (69)
.++.|.-.| .|+||+|..-||+.|+-.+
T Consensus 304 ~ENm~sg~A-~rPgDVits~~G~TVEV~N 331 (486)
T 3pei_A 304 AENAVDARS-YRPGDVLKSMKGITVEVSN 331 (486)
T ss_dssp EEC-------CCTTEEEECTTCCEEEECC
T ss_pred eccCCCCCC-CCCCCEEEeCCCcEEEEec
Confidence 467777776 9999999999999886443
No 227
>2cw5_A Bacterial fluorinating enzyme homolog; alpha and beta protein (A/B), beta barrel, structural genomics, NPPSFA; 1.94A {Thermus thermophilus}
Probab=29.71 E-value=73 Score=21.72 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=16.1
Q ss_pred EecCChHhhcCCCCCCEEE
Q psy16960 27 KLYGSPADKSDLEIGDEIL 45 (69)
Q Consensus 27 v~~gspA~~aGLk~GD~Il 45 (69)
+..|++|+.-||+.||.|.
T Consensus 235 vn~GsAa~~lgl~~Gd~V~ 253 (255)
T 2cw5_A 235 VNRGSAREALGLKEGMPVR 253 (255)
T ss_dssp ETTSCHHHHTTCCTTCEEE
T ss_pred EeCcCHHHHcCCCCCCEEE
Confidence 3468999999999999984
No 228
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1
Probab=29.63 E-value=12 Score=27.98 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=21.6
Q ss_pred ecCChHhhcCCCCCCEEEEECCEEeCCC
Q psy16960 28 LYGSPADKSDLEIGDEILEVNGKTFKDN 55 (69)
Q Consensus 28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~ 55 (69)
.++.|.-.| .|+||+|.+-||+.|+-.
T Consensus 323 ~ENm~sg~A-~rPgDVits~~GkTVEV~ 349 (503)
T 1gyt_A 323 CENMPGGRA-YRPGDVLTTMSGQTVEVL 349 (503)
T ss_dssp EEECCSTTC-CCTTCEEECTTSCEEECS
T ss_pred eccCCCCCC-CCCCCEEEeCCCcEEEec
Confidence 356776665 899999999999998643
No 229
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima} PDB: 2zbu_A*
Probab=29.48 E-value=74 Score=21.73 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.7
Q ss_pred ecCChHhhcCCCCCCEEE
Q psy16960 28 LYGSPADKSDLEIGDEIL 45 (69)
Q Consensus 28 ~~gspA~~aGLk~GD~Il 45 (69)
..|++|+.-||+.||.|.
T Consensus 243 n~GsAa~~lgl~~Gd~V~ 260 (263)
T 2zbv_A 243 NLGDASQVLSVKEGDEIE 260 (263)
T ss_dssp TTSCHHHHHTCCTTCEEE
T ss_pred eCcCHHHHcCCCCCCEEE
Confidence 468999999999999985
No 230
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=29.45 E-value=30 Score=20.82 Aligned_cols=15 Identities=20% Similarity=0.233 Sum_probs=11.7
Q ss_pred hHhhcCCCCCCEEEE
Q psy16960 32 PADKSDLEIGDEILE 46 (69)
Q Consensus 32 pA~~aGLk~GD~Il~ 46 (69)
-+...+|++||.|+-
T Consensus 86 FV~~~~L~~GD~~~F 100 (130)
T 1wid_A 86 FVKEKNLRAGDVVSF 100 (130)
T ss_dssp HHHHTTCCTTCEEEE
T ss_pred HHHHcCCCCCCEEEE
Confidence 345568999999985
No 231
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=29.45 E-value=32 Score=19.07 Aligned_cols=34 Identities=24% Similarity=0.098 Sum_probs=19.6
Q ss_pred cCCeEEEEEEcCCCeEEecCChHh-h---cCCCCCCEEE
Q psy16960 11 LKGYCIIIAETPDGKVKLYGSPAD-K---SDLEIGDEIL 45 (69)
Q Consensus 11 ~~g~~i~l~~~~~~~iv~~gspA~-~---aGLk~GD~Il 45 (69)
-+||||+....- ..+.+--+.-. . ..|+.||++.
T Consensus 11 ~KGfGFI~~~dG-~DvFvH~s~i~~~~g~~~l~~G~~V~ 48 (74)
T 2kcm_A 11 AKKYGFIQGDDG-ESYFLHFSELLDKKDEGKLVKGSMVH 48 (74)
T ss_dssp TTTEEEEEETTS-CEECCCGGGSSCSGGGTTCCTTSEEE
T ss_pred CCCEEEEecCCC-ceEEEEhhhcccCCCCCCCCCCCEEE
Confidence 689999985432 33422111111 1 3599999986
No 232
>2q6k_A Chlorinase; complex with adenosine, biosynthetic protein; HET: ADN; 1.55A {Salinispora tropica} PDB: 2q6i_A* 2q6o_A* 2q6l_A*
Probab=28.66 E-value=78 Score=21.82 Aligned_cols=19 Identities=21% Similarity=0.064 Sum_probs=16.4
Q ss_pred ecCChHhhcCCCCCCEEEE
Q psy16960 28 LYGSPADKSDLEIGDEILE 46 (69)
Q Consensus 28 ~~gspA~~aGLk~GD~Il~ 46 (69)
..|++|+.-||+.||.|.-
T Consensus 251 n~GsAa~~lgl~~Gd~V~i 269 (283)
T 2q6k_A 251 NQSNFIEKWPVVPGDSITV 269 (283)
T ss_dssp TTBCHHHHSCCCTTCEEEE
T ss_pred eCcCHHHHcCCCCCCEEEE
Confidence 4689999999999999864
No 233
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=28.27 E-value=23 Score=24.96 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=31.0
Q ss_pred ChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 31 spA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
--|+..||++|+.+-.+++.-|..-. ++.+-++|.+
T Consensus 218 miA~~~gl~~G~~~h~~gdaHIY~nH-~e~~~~qL~R 253 (295)
T 3ed7_A 218 MIAHITGLKPGDFIHTLGDAHIYLNH-IEPLKIQLQR 253 (295)
T ss_dssp HHHHHHTCEEEEEEEEEEEEEEEGGG-HHHHHHHTTS
T ss_pred HHHHHhCCeeeEEEEEEEEEEecHHH-HHHHHHHhcC
Confidence 45888999999999999999999877 8888888764
No 234
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Probab=27.98 E-value=25 Score=25.40 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=31.1
Q ss_pred ChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 31 spA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
--|+..||++|+.+-.+++.-|..-. ++.+-++|.+
T Consensus 278 miAq~~Gle~GefvhtigdaHIY~nH-ie~vkeqL~R 313 (355)
T 1hw4_A 278 MIAHITGLKPGDFIHTLGDAHIYLNH-IEPLKIQLQR 313 (355)
T ss_dssp HHHHHTTCEEEEEEEEEEEEEEEGGG-HHHHHHHTTS
T ss_pred HHHHHHCCeeEEEEEEEEEeEeeHHH-HHHHHHHHhc
Confidence 56788899999999999999999777 8888888765
No 235
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide biosynthesis, transferase; HET: UMP CB3; 2.08A {Filobasidiella neoformans}
Probab=27.93 E-value=23 Score=25.12 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=30.9
Q ss_pred ChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 31 spA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
--|+..||++|+.+-.+++.-|..-. ++.+-++|.+
T Consensus 237 miA~~~gl~~G~f~h~~gdaHIY~nH-~e~v~~qL~R 272 (317)
T 2aaz_A 237 MIALITDTEPHEFILQMGDAHVYRDH-VEPLKTQLER 272 (317)
T ss_dssp HHHHHHTCEEEEEEEEEEEEEEEGGG-HHHHHHHHTS
T ss_pred HHHHHhCCeeEEEEEEeeeeEeeHhH-HHHHHHHHhc
Confidence 56888899999999999999999776 8888777765
No 236
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=27.63 E-value=34 Score=20.37 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=12.3
Q ss_pred CChHhhcCCCCCCEEEEEC
Q psy16960 30 GSPADKSDLEIGDEILEVN 48 (69)
Q Consensus 30 gspA~~aGLk~GD~Il~Vn 48 (69)
+++|++- .++||+|+=+-
T Consensus 48 NGAAArl-~~~GD~vII~a 65 (96)
T 1vc3_B 48 NGAAAHL-VKPGDLVILVA 65 (96)
T ss_dssp EGGGGGT-CCTTCEEEEEE
T ss_pred chHHHcc-CCCCCEEEEEE
Confidence 3555554 79999998543
No 237
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=27.32 E-value=24 Score=25.43 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=31.0
Q ss_pred ChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 31 spA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
--|+..||++|+.+-.+++.-|..-. ++.+-++|.+
T Consensus 283 miA~~~gl~~G~~~h~~gdaHIY~nh-~e~~~~qL~R 318 (360)
T 3ix6_A 283 MIAQVTGLKPGEFIHTLGDAHIYSNH-FEQARLQLTR 318 (360)
T ss_dssp HHHHHHTCEEEEEEEEEEEEEEEGGG-HHHHHHHTTS
T ss_pred HHHHHhCCcceEEEEEEeeeEEeHHH-HHHHHHHhcC
Confidence 34788899999999999999999877 8888888865
No 238
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA, xanthomonas oryzae PV. ORYZ KACC10331, hydrolase, manganese; 2.60A {Xanthomonas oryzae PV}
Probab=26.63 E-value=15 Score=27.58 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=22.1
Q ss_pred ecCChHhhcCCCCCCEEEEECCEEeCCCC
Q psy16960 28 LYGSPADKSDLEIGDEILEVNGKTFKDNC 56 (69)
Q Consensus 28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~~ 56 (69)
.++.|.-.| .|+||+|..-||+.|+-.+
T Consensus 315 ~ENm~sg~A-~rPgDVit~~~G~TVEV~N 342 (490)
T 3jru_B 315 VENAIDGNA-YRPSDVITSMSGKTIEVGN 342 (490)
T ss_dssp EEECCSTTC-CCTTCEEECTTSCEEECSC
T ss_pred eccCCCCCC-CCCCCEEEecCCcEEEecC
Confidence 356777665 9999999999999986443
No 239
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962 aminopeptidase, hydrolase, manganese, metal-binding, protea structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii}
Probab=26.59 E-value=15 Score=27.61 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=22.0
Q ss_pred ecCChHhhcCCCCCCEEEEECCEEeCCCC
Q psy16960 28 LYGSPADKSDLEIGDEILEVNGKTFKDNC 56 (69)
Q Consensus 28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~~ 56 (69)
.++.|.-.| .|+||+|..-||+.|+-.+
T Consensus 303 ~ENm~sg~A-~rPgDVits~~GkTVEV~N 330 (482)
T 3ij3_A 303 VENAIGSRS-YRPGDVVQTRARKTIEITN 330 (482)
T ss_dssp EEECCSTTC-CCTTCEEECTTSCEEECSC
T ss_pred eccCCCCCC-CCCCCEEEeCCCCEEEEec
Confidence 356777665 8999999999999976443
No 240
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=26.22 E-value=49 Score=20.07 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=15.6
Q ss_pred eEEecCChH-hhcCCCCCCEEEEEC
Q psy16960 25 KVKLYGSPA-DKSDLEIGDEILEVN 48 (69)
Q Consensus 25 ~iv~~gspA-~~aGLk~GD~Il~Vn 48 (69)
.|..+++.. .-..|+.||++++.|
T Consensus 7 ~V~~~~G~~k~i~eL~~GD~Vla~d 31 (145)
T 1at0_A 7 TALLESGVRKPLGELSIGDRVLSMT 31 (145)
T ss_dssp EEEBTTSCEEEGGGCCTTCEEEEEC
T ss_pred EEEeCCCCEeEHHHcCCCCEEEEEC
Confidence 344443333 333699999999997
No 241
>3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp}
Probab=25.60 E-value=17 Score=27.45 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=22.1
Q ss_pred ecCChHhhcCCCCCCEEEEECCEEeCCCC
Q psy16960 28 LYGSPADKSDLEIGDEILEVNGKTFKDNC 56 (69)
Q Consensus 28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~~ 56 (69)
.++.|.-.| .|+||+|..-||+.|+-.+
T Consensus 336 ~ENm~sg~A-~rPgDVits~~GkTVEV~N 363 (515)
T 3kzw_A 336 AENMINEAS-MKPDDVFTALSGETVEVMN 363 (515)
T ss_dssp EEECCCTTC-CCTTCEEECTTSCEEECSC
T ss_pred eccCCCCCC-CCCCCEEEeCCCCEEEecC
Confidence 356777666 8999999999999986443
No 242
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3 c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A 1bll_E* 2j9a_A* 2ewb_A*
Probab=25.38 E-value=13 Score=27.75 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=21.4
Q ss_pred ecCChHhhcCCCCCCEEEEECCEEeCCC
Q psy16960 28 LYGSPADKSDLEIGDEILEVNGKTFKDN 55 (69)
Q Consensus 28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~ 55 (69)
.++.|.-.| .|+||+|..-||+.|+-.
T Consensus 303 ~ENm~sg~A-~rPgDVits~~GkTVEV~ 329 (484)
T 1lam_A 303 CENMPSGKA-NKPGDVVRARNGKTIQVD 329 (484)
T ss_dssp EEECCSTTS-CCTTEEEECTTSCEEEES
T ss_pred eccCCCCCC-CCCCCEEEeCCCcEEEee
Confidence 356777666 899999999999987533
No 243
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A
Probab=24.98 E-value=38 Score=22.14 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=13.2
Q ss_pred EEecCChHhhcCCCCCCEEE-EECC
Q psy16960 26 VKLYGSPADKSDLEIGDEIL-EVNG 49 (69)
Q Consensus 26 iv~~gspA~~aGLk~GD~Il-~Vng 49 (69)
++..|+|+-..-|++||++. +|.|
T Consensus 189 vI~TGTp~Gvg~l~~GD~v~~~i~g 213 (221)
T 3s52_A 189 IVLTGTPQGVGPMQSGDMLKIMLNG 213 (221)
T ss_dssp EEECCCCSCCEEECTTCEEEEEETT
T ss_pred EEEeCCCCcceecCCCCEEEEEEeC
Confidence 33456665444466777665 4544
No 244
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics, seattle S genomics center for infectious disease, transferase; HET: CIT; 1.65A {Burkholderia thailandensis}
Probab=24.97 E-value=26 Score=25.01 Aligned_cols=36 Identities=3% Similarity=-0.119 Sum_probs=30.6
Q ss_pred ChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 31 spA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
--|+..||++|+.+-.+++.-|..-. ++.+-++|.+
T Consensus 239 miA~~~gl~~G~~~h~~gdaHIY~nH-ie~~~eqL~R 274 (327)
T 3v8h_A 239 LVGRLTGYSPRWFTYFIGDAHIYENQ-LDMLKQQLER 274 (327)
T ss_dssp HHHHHHTCEEEEEEEEEEEEEEEGGG-HHHHHHHHHS
T ss_pred HHHHHhCCeeeEEEEEEeeeEeehhH-HHHHHHHhCC
Confidence 34788899999999999999999877 8888887764
No 245
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=24.91 E-value=41 Score=22.39 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=10.7
Q ss_pred CChHhhcC-CCCCCEEEEECCE
Q psy16960 30 GSPADKSD-LEIGDEILEVNGK 50 (69)
Q Consensus 30 gspA~~aG-Lk~GD~Il~Vng~ 50 (69)
||++.+.+ +++||+++-++++
T Consensus 1 ~~~~~~~~~~~~Gd~V~~~~~~ 22 (336)
T 2b25_A 1 GSSTSRERPFQAGELILAETGE 22 (336)
T ss_dssp -------CCCCTTCEEEEEC--
T ss_pred CCCcccCCCCCCCCEEEEEeCC
Confidence 45566665 9999999998653
No 246
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A
Probab=24.81 E-value=17 Score=27.31 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=21.6
Q ss_pred ecCChHhhcCCCCCCEEEEECCEEeCCC
Q psy16960 28 LYGSPADKSDLEIGDEILEVNGKTFKDN 55 (69)
Q Consensus 28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~ 55 (69)
.++.|.-.| .|+||+|..-||+.|+-.
T Consensus 305 ~ENm~sg~A-~rPgDVits~~GkTVEV~ 331 (491)
T 2hc9_A 305 VENNVSPIA-NKPDDIIKMLSGKTVEIN 331 (491)
T ss_dssp EEECCSTTS-CCTTCEEECTTSCEEECS
T ss_pred eecCCCCCC-CCCCCEEEeCCCcEEEEe
Confidence 356777665 899999999999998643
No 247
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=24.76 E-value=38 Score=23.17 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=15.7
Q ss_pred ecCChHhhcCCCCCCEEE
Q psy16960 28 LYGSPADKSDLEIGDEIL 45 (69)
Q Consensus 28 ~~gspA~~aGLk~GD~Il 45 (69)
..|++|+.-||+.||.|.
T Consensus 238 n~GsAa~~lgl~~Gd~V~ 255 (259)
T 2wr8_A 238 NMGSAAERLNVKVGDELR 255 (259)
T ss_dssp TTBCHHHHHTCCTTCEEE
T ss_pred eCcCHHHHcCCCCCCEEE
Confidence 468999999999999985
No 248
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A*
Probab=24.37 E-value=19 Score=25.34 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=30.2
Q ss_pred ChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 31 spA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
--|+..||++|+.+-.+++.-|..-. .+.+-++|++
T Consensus 220 miA~~~gl~~G~~~h~~gdaHIY~nh-~e~v~~qL~R 255 (297)
T 1f28_A 220 MIAHVCDLDPGDFIHVMGDCHIYKDH-IEALQQQLTR 255 (297)
T ss_dssp HHHHHTTCEEEEEEEEEEEEEEEHHH-HHHHHTGGGS
T ss_pred HHHHHhCCeeEEEEEEeeeeEeeHhH-HHHHHHHHhc
Confidence 56888999999999999999998766 7777777754
No 249
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=23.61 E-value=62 Score=19.44 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=12.2
Q ss_pred CChHhhcCCCCCCEEEEEC
Q psy16960 30 GSPADKSDLEIGDEILEVN 48 (69)
Q Consensus 30 gspA~~aGLk~GD~Il~Vn 48 (69)
+++|++- .++||+|+=+-
T Consensus 47 NGAAArl-~~~GD~vII~a 64 (102)
T 3plx_B 47 NGAAARL-AEVGDKVIIMS 64 (102)
T ss_dssp EGGGGGG-CCTTCEEEEEE
T ss_pred CcHHHhc-cCCCCEEEEEE
Confidence 3455554 79999998653
No 250
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=23.57 E-value=61 Score=16.46 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=14.3
Q ss_pred cCChHhhcCCCCCCEEEEE
Q psy16960 29 YGSPADKSDLEIGDEILEV 47 (69)
Q Consensus 29 ~gspA~~aGLk~GD~Il~V 47 (69)
....+++-+|++||.+...
T Consensus 40 t~~s~~~l~L~~G~~V~a~ 58 (68)
T 1gut_A 40 SLDSVEELGVKEGAELTAV 58 (68)
T ss_dssp EHHHHHHHTCCTTCEEEEE
T ss_pred CHHHHHHCCCCCCCEEEEE
Confidence 3345567799999999864
No 251
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding, proteas; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A*
Probab=23.47 E-value=15 Score=27.60 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=21.1
Q ss_pred ecCChHhhcCCCCCCEEEEECCEEeCC
Q psy16960 28 LYGSPADKSDLEIGDEILEVNGKTFKD 54 (69)
Q Consensus 28 ~~gspA~~aGLk~GD~Il~Vng~~i~~ 54 (69)
.++.|.-.| .|+||+|..-||+.|+-
T Consensus 320 ~ENm~~g~A-~rPgDVit~~~G~TVEV 345 (497)
T 3h8g_F 320 AENMPSGGA-TRPGDIVTTMSGQTVEI 345 (497)
T ss_dssp EEECCSTTS-CCTTEEEECTTSCEEEE
T ss_pred eccCCCCCC-CCCCCEEEeCCCcEEEe
Confidence 356777665 99999999999998763
No 252
>2f4n_A Hypothetical protein MJ1651; conserved hypothetical protein, mehtanococcus jannaschii, structural genomics, PSI; 2.50A {Methanocaldococcus jannaschii}
Probab=23.45 E-value=75 Score=21.96 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=16.6
Q ss_pred ecCChHhhcCCCCCCEEEEE
Q psy16960 28 LYGSPADKSDLEIGDEILEV 47 (69)
Q Consensus 28 ~~gspA~~aGLk~GD~Il~V 47 (69)
..|++|+.-||+.||.|.-.
T Consensus 245 n~GsAa~~lgl~~Gd~V~i~ 264 (273)
T 2f4n_A 245 FMDNASKLLNVDYLDEIEIE 264 (273)
T ss_dssp TTSCHHHHHTCCTTCEEEEC
T ss_pred eCcCHHHHcCCCCCCEEEEE
Confidence 46889999999999998643
No 253
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* 3t8w_A*
Probab=23.27 E-value=21 Score=27.15 Aligned_cols=28 Identities=29% Similarity=0.236 Sum_probs=22.1
Q ss_pred ecCChHhhcCCCCCCEEEEECCEEeCCCC
Q psy16960 28 LYGSPADKSDLEIGDEILEVNGKTFKDNC 56 (69)
Q Consensus 28 ~~gspA~~aGLk~GD~Il~Vng~~i~~~~ 56 (69)
.++.|.-.| .|+||+|..-||+.|+-.+
T Consensus 347 ~ENm~sg~A-~rPgDVit~~~GkTVEV~N 374 (528)
T 3kr4_A 347 CENMVSKNS-YRPGDIITASNGKTIEVGN 374 (528)
T ss_dssp EEECCSTTS-CCTTCEEECTTSCEEECSC
T ss_pred eccCCCCCC-CCCCCEEEeCCCcEEEEec
Confidence 456777665 9999999999999976443
No 254
>3uwl_A TS, tsase, thymidylate synthase; methyltransferase, transferase; HET: CME FOZ; 2.07A {Enterococcus faecalis} PDB: 3ik0_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 2g86_A* ...
Probab=23.26 E-value=35 Score=24.02 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=31.4
Q ss_pred ChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 31 spA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
--|+..||++|+.+-.+++.-|..-. .+.+-++|.+
T Consensus 238 miA~~~gl~~G~~~h~~gd~HIY~nh-~e~~~~ql~R 273 (315)
T 3uwl_A 238 LIAHETGLEVGEFVHTLGDAHLYQNH-VEQMQEQLSR 273 (315)
T ss_dssp HHHHHTTCEEEEEEEEEEEEEEEGGG-HHHHHHHHTS
T ss_pred HHHHHhCCccceEEEEeeeeEeeHhH-HHHHHHHhCC
Confidence 56888899999999999999999877 8888888765
No 255
>4efd_A Aminopeptidase; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei brucei}
Probab=23.20 E-value=18 Score=27.47 Aligned_cols=26 Identities=27% Similarity=0.176 Sum_probs=20.5
Q ss_pred ecCChHhhcCCCCCCEEEEECCEEeCC
Q psy16960 28 LYGSPADKSDLEIGDEILEVNGKTFKD 54 (69)
Q Consensus 28 ~~gspA~~aGLk~GD~Il~Vng~~i~~ 54 (69)
.++.|.-.| .|+||+|..-||+.|+-
T Consensus 343 ~ENm~sg~A-~rPgDVits~~GkTVEV 368 (522)
T 4efd_A 343 AENAIGPKS-YRNDDIIVMKSGKTVEV 368 (522)
T ss_dssp EECCC-CCS-TTTTEEEECTTSCEEEE
T ss_pred eccCCCCCC-CCCCCEEEecCCcEEEe
Confidence 467777776 99999999999998753
No 256
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=22.97 E-value=46 Score=19.85 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=12.0
Q ss_pred CChHhhcCCCCCCEEEEEC
Q psy16960 30 GSPADKSDLEIGDEILEVN 48 (69)
Q Consensus 30 gspA~~aGLk~GD~Il~Vn 48 (69)
+++|++- .++||+|+=+-
T Consensus 46 NGAAArl-~~~GD~vII~a 63 (97)
T 1uhe_A 46 NGAAARK-VAIGDVVIILA 63 (97)
T ss_dssp EGGGGGG-CCTTCEEEEEE
T ss_pred chHHHcc-CCCCCEEEEEE
Confidence 3445543 69999998554
No 257
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1
Probab=22.70 E-value=17 Score=25.47 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=29.6
Q ss_pred ChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 31 spA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
--|+..||++|+.+-.+++.-|..-. .+.+-++|++
T Consensus 197 miA~~~gl~~G~~~h~~gdaHIY~nh-~e~v~~qL~R 232 (286)
T 1tis_A 197 IVAKMCNLIPGDLIFSGGNTHIYMNH-VEQCKEILRR 232 (286)
T ss_dssp HHHHHHTCEEEEEEEEEEEEEEESSC-CTTTGGGSSC
T ss_pred HHHHHHCCeeEEEEEEEeeeEeeHHH-HHHHHHHHcC
Confidence 45788899999999999999998766 7777777654
No 258
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Probab=22.51 E-value=23 Score=24.02 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=29.2
Q ss_pred hHhh--cCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 32 PADK--SDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 32 pA~~--aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
-|+. .||++|+.+-.+++--|..-. .+.+-++|++
T Consensus 195 iA~~~~~gl~~G~~~h~~gdaHIY~nh-~e~~~~~L~r 231 (246)
T 1b5e_A 195 NAGDSTRQYKAGSIIWNVGSLHVYSRH-FYLVDHWWKT 231 (246)
T ss_dssp HHHCTTCCCEEEEEEEEEEEEEEEGGG-HHHHHHHHHH
T ss_pred HhhhhccCCceeEEEEEEEeEEEcHHH-HHHHHHHHhh
Confidence 4667 899999999999999999776 8888777743
No 259
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=22.31 E-value=52 Score=18.76 Aligned_cols=20 Identities=15% Similarity=0.214 Sum_probs=14.3
Q ss_pred cCChHhhc-CCCCCCEEEEEC
Q psy16960 29 YGSPADKS-DLEIGDEILEVN 48 (69)
Q Consensus 29 ~gspA~~a-GLk~GD~Il~Vn 48 (69)
..-|+.+. |++.||.|-=+.
T Consensus 39 ~~DPvar~~G~k~GdVvkI~R 59 (78)
T 1hmj_A 39 EDDPVIQEIGAKEGDVVRVIR 59 (78)
T ss_pred CcCHhhHHhCCCCCCEEEEEE
Confidence 45566655 999999876554
No 260
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=21.96 E-value=61 Score=17.19 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=19.4
Q ss_pred cCCeEEEEEEcCCCeEEecCChHhh---cCCCCCCEEE
Q psy16960 11 LKGYCIIIAETPDGKVKLYGSPADK---SDLEIGDEIL 45 (69)
Q Consensus 11 ~~g~~i~l~~~~~~~iv~~gspA~~---aGLk~GD~Il 45 (69)
-+|||++.... ...+..--+.-.. ..|+.||++.
T Consensus 11 ~kGfGFI~~~~-g~dvFvH~s~i~~~g~~~l~~G~~V~ 47 (66)
T 1g6p_A 11 KKGYGFITKDE-GGDVFVHWSAIEMEGFKTLKEGQVVE 47 (66)
T ss_dssp TTTEEEEEETT-SCBCBBCSSSSCCSSCCCCCSSSEEE
T ss_pred CCCEEEEecCC-CceEEEEhHHccccCCCCCCCCCEEE
Confidence 78999998542 2233221122222 2489999976
No 261
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=21.90 E-value=76 Score=20.46 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=12.0
Q ss_pred ChHhhcCCCCCCEEEE
Q psy16960 31 SPADKSDLEIGDEILE 46 (69)
Q Consensus 31 spA~~aGLk~GD~Il~ 46 (69)
..++.+|++.||.|.=
T Consensus 113 Nl~~~~G~~iGDsV~I 128 (166)
T 2xvs_A 113 NIVQSWGVLIGDSVAI 128 (166)
T ss_dssp CCCSSCCCCTTCEEEE
T ss_pred eccCCcceEecCEEEe
Confidence 3556678999998864
No 262
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=21.79 E-value=63 Score=19.61 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=13.7
Q ss_pred ChHhhcCCCCCCEEEEEC
Q psy16960 31 SPADKSDLEIGDEILEVN 48 (69)
Q Consensus 31 spA~~aGLk~GD~Il~Vn 48 (69)
.-|++.||+.||.+.-.+
T Consensus 60 ~dA~~lGI~dGd~V~V~s 77 (146)
T 2ki8_A 60 EDWNALGLQEGDRVKVKT 77 (146)
T ss_dssp HHHHHHTCCTTCEEEEEC
T ss_pred HHHHHcCCCCCCEEEEEe
Confidence 346677999999987655
No 263
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A
Probab=21.77 E-value=62 Score=22.33 Aligned_cols=24 Identities=42% Similarity=0.506 Sum_probs=16.0
Q ss_pred EEecCChHhhcCCCCCCEEE-EECC
Q psy16960 26 VKLYGSPADKSDLEIGDEIL-EVNG 49 (69)
Q Consensus 26 iv~~gspA~~aGLk~GD~Il-~Vng 49 (69)
++..|+|+-..-|++||++. +|.|
T Consensus 253 vI~TGTP~Gvg~l~~GD~v~v~ieg 277 (288)
T 4dbf_A 253 VIATGSPAGTEAMVDGDYIEIEIPG 277 (288)
T ss_dssp EEECCCCSCCCBCCTTCEEEEEETT
T ss_pred EEEcCCCCCCeecCCCCEEEEEECC
Confidence 44567777655688888876 5654
No 264
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=21.51 E-value=71 Score=15.91 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=12.9
Q ss_pred ChHhhcCCCCCCEEEEE
Q psy16960 31 SPADKSDLEIGDEILEV 47 (69)
Q Consensus 31 spA~~aGLk~GD~Il~V 47 (69)
..+++-+|++||.+...
T Consensus 41 ~s~~~l~L~~G~~V~~~ 57 (67)
T 1fr3_A 41 DSVADLDLVPGDKVTAL 57 (67)
T ss_dssp HHHHHHTCCTTCEEEEE
T ss_pred HHHHhCCCCCCCEEEEE
Confidence 44556799999999863
No 265
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=21.43 E-value=48 Score=18.83 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=10.3
Q ss_pred HhhcCCCCCCEEE
Q psy16960 33 ADKSDLEIGDEIL 45 (69)
Q Consensus 33 A~~aGLk~GD~Il 45 (69)
+...+|+.||.++
T Consensus 73 v~~~~L~~GD~lv 85 (104)
T 1yel_A 73 VKDNNLEDGKYLQ 85 (104)
T ss_dssp HHHHTCCTTCEEE
T ss_pred HHHcCCCCCCEEE
Confidence 3455899999987
No 266
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=20.90 E-value=41 Score=25.29 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=31.1
Q ss_pred ChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 31 spA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
--|+..||++|+.+-.+++.-|..-. ++.+-++|.+
T Consensus 438 miA~~~gl~~G~~~h~~gdaHIY~nh-~~~~~~ql~R 473 (515)
T 3nrr_A 438 MVAQVCGLGLGEFVHNLADAHIYVDH-VDAVTTQIAR 473 (515)
T ss_dssp HHHHHTTCEEEEEEEEEEEEEEEGGG-HHHHHHHHTS
T ss_pred HHHHHhCCeeeEEEEEEEeEEEcHHH-HHHHHHHhcC
Confidence 44888999999999999999999877 8888888765
No 267
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=20.81 E-value=48 Score=19.03 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=12.0
Q ss_pred cCCh-HhhcCCCCCCEEE
Q psy16960 29 YGSP-ADKSDLEIGDEIL 45 (69)
Q Consensus 29 ~gsp-A~~aGLk~GD~Il 45 (69)
...| |..-|+++||.|-
T Consensus 47 ~~DPva~~~g~k~GdVvk 64 (84)
T 4ayb_H 47 ASDPVARSINAKPGDIIR 64 (84)
T ss_dssp SSSHHHHHHTCCTTCEEE
T ss_pred ccCHhHHhhCCCCCCEEE
Confidence 3456 5555999999764
No 268
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Probab=20.33 E-value=59 Score=22.07 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=13.8
Q ss_pred EEecCChHhhcCCCCCCEEE-EECC
Q psy16960 26 VKLYGSPADKSDLEIGDEIL-EVNG 49 (69)
Q Consensus 26 iv~~gspA~~aGLk~GD~Il-~Vng 49 (69)
++..|+|+-..-|++||.+. +|.|
T Consensus 228 vI~TGTp~Gvg~l~~GD~v~v~i~g 252 (265)
T 3rr6_A 228 VILTGTPEGVGPIVDGDTVSVTIEG 252 (265)
T ss_dssp EEECCCCSCCEECCTTCEEEEEETT
T ss_pred EEEeCCCCCceeCCCCCEEEEEECC
Confidence 34456666555577777665 4543
No 269
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=20.10 E-value=88 Score=17.12 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=18.7
Q ss_pred cCCeEEEEEEcCCCeEE----ecCChHhhcCCCCCCEEE
Q psy16960 11 LKGYCIIIAETPDGKVK----LYGSPADKSDLEIGDEIL 45 (69)
Q Consensus 11 ~~g~~i~l~~~~~~~iv----~~gspA~~aGLk~GD~Il 45 (69)
-+||||+....-....+ +.+.. .|+.||+|.
T Consensus 13 ~KGfGFI~~~dg~~dFvH~s~i~~~g----~l~~G~~V~ 47 (74)
T 2k5n_A 13 DKGFGFIKDENGDNRYFHVIKVANPD----LIKKDAAVT 47 (74)
T ss_dssp TTTEEEEEESSSCEEEEEGGGBSSGG----GCCTTCEEE
T ss_pred CCCeEEEecCCCCceEEEHhHcccCC----CCCCCCEEE
Confidence 78999998543221222 12111 599999987
No 270
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=20.01 E-value=44 Score=25.16 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=31.1
Q ss_pred ChHhhcCCCCCCEEEEECCEEeCCCCChHHHHHhhcC
Q psy16960 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67 (69)
Q Consensus 31 spA~~aGLk~GD~Il~Vng~~i~~~~~~~ev~~~i~~ 67 (69)
--|+..||++|+.+-.+++.-|..-. ++.+-++|.+
T Consensus 444 miA~~~gl~~G~~~h~~gdaHIY~nh-~~~~~~ql~R 479 (521)
T 3irm_A 444 LIAKATGLRPGELVHTLGDAHVYSNH-VEPCNEQLKR 479 (521)
T ss_dssp HHHHHTTCEEEEEEEEEEEEEEEGGG-HHHHHHHTTS
T ss_pred HHHHHhCCcceEEEEEEEEEEEehhH-HHHHHHHhcC
Confidence 44888999999999999999999877 8888888764
Done!