RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16960
(69 letters)
>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region)
or GLGF (after a conserved sequence motif). Many PDZ
domains bind C-terminal polypeptides, though binding to
internal (non-C-terminal) polypeptides and even to
lipids has been demonstrated. Heterodimerization
through PDZ-PDZ domain interactions adds to the
domain's versatility, and PDZ domain-mediated
interactions may be modulated dynamically through
target phosphorylation. Some PDZ domains play a role in
scaffolding supramolecular complexes. PDZ domains are
found in diverse signaling proteins in bacteria,
archebacteria, and eurkayotes. This CD contains two
distinct structural subgroups with either a N- or
C-terminal beta-strand forming the peptide-binding
groove base. The circular permutation placing the
strand on the N-terminus appears to be found in
Eumetazoa only, while the C-terminal variant is found
in all three kingdoms of life, and seems to co-occur
with protease domains. PDZ domains have been named
after PSD95(post synaptic density protein), DlgA
(Drosophila disc large tumor suppressor), and ZO1, a
mammalian tight junction protein.
Length = 70
Score = 42.3 bits (100), Expect = 4e-07
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GSPA+++ L+ GD IL VNG K+ +V +
Sbjct: 23 GSPAERAGLQAGDVILAVNGTDVKNL-TLEDVAELL 57
>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of
Eumetazoan signaling molecules, often in tandem
arrangements. May be responsible for specific
protein-protein interactions, as most PDZ domains bind
C-terminal polypeptides, and binding to internal
(non-C-terminal) polypeptides and even to lipids has
been demonstrated. In this subfamily of PDZ domains an
N-terminal beta-strand forms the peptide-binding groove
base, a circular permutation with respect to PDZ
domains found in proteases.
Length = 82
Score = 42.2 bits (100), Expect = 4e-07
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
G PA++ L +GD ILEVNG + + H E +
Sbjct: 36 GGPAERGGLRVGDRILEVNGVSV-EGLTHEEAV 67
>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2. Also
called DHR (Dlg homologous region) or GLGF (relatively
well conserved tetrapeptide in these domains). Some
PDZs have been shown to bind C-terminal polypeptides;
others appear to bind internal (non-C-terminal)
polypeptides. Different PDZs possess different binding
specificities.
Length = 85
Score = 41.2 bits (97), Expect = 1e-06
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
GSPA K+ L +GD ILEVNG + + H E +
Sbjct: 36 GSPAAKAGLRVGDVILEVNGTSVE-GLTHLEAV 67
>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-,
tail-specific-, and tricorn proteases, which function
in posttranslational protein processing, maturation,
and disassembly or degradation, in Bacteria, Archaea,
and plant chloroplasts. May be responsible for
substrate recognition and/or binding, as most PDZ
domains bind C-terminal polypeptides, and binding to
internal (non-C-terminal) polypeptides and even to
lipids has been demonstrated. In this subfamily of
protease-associated PDZ domains a C-terminal
beta-strand forms the peptide-binding groove base, a
circular permutation with respect to PDZ domains found
in Eumetazoan signaling proteins.
Length = 85
Score = 39.5 bits (93), Expect = 6e-06
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 28 LYGSPADKSDLEIGDEILEVNGKTFKD 54
L GSPA K+ ++ GD I+ ++G+
Sbjct: 21 LPGSPAAKAGIKAGDIIVAIDGEPVDG 47
>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant
zinc metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be
responsible for substrate recognition and/or binding,
as most PDZ domains bind C-terminal polypeptides, and
binding to internal (non-C-terminal) polypeptides and
even to lipids has been demonstrated. In this subfamily
of protease-associated PDZ domains a C-terminal
beta-strand forms the peptide-binding groove base, a
circular permutation with respect to PDZ domains found
in Eumetazoan signaling proteins.
Length = 79
Score = 35.7 bits (83), Expect = 2e-04
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
GSPA K+ L+ GD IL +NG+ K
Sbjct: 22 GSPAAKAGLKAGDRILAINGQKIKS 46
>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer
membrane].
Length = 406
Score = 36.9 bits (86), Expect = 2e-04
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 18 IAETPDGKVK----LYGSPADKSDLEIGDEILEVNGKTFKDN 55
+ G VK + GSPA K+ ++ GD I++++GK+
Sbjct: 106 LQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGV 147
>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine
proteases, such as DegP/HtrA, which are oligomeric
proteins involved in heat-shock response, chaperone
function, and apoptosis. May be responsible for
substrate recognition and/or binding, as most PDZ
domains bind C-terminal polypeptides, though binding to
internal (non-C-terminal) polypeptides and even to
lipids has been demonstrated. In this subfamily of
protease-associated PDZ domains a C-terminal
beta-strand forms the peptide-binding groove base, a
circular permutation with respect to PDZ domains found
in Eumetazoan signaling proteins.
Length = 90
Score = 34.9 bits (81), Expect = 3e-04
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
GSPA K+ L+ GD IL VNGK K
Sbjct: 34 GSPAAKAGLKPGDVILAVNGKPVKS 58
>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF). PDZ
domains are found in diverse signaling proteins.
Length = 80
Score = 34.5 bits (80), Expect = 5e-04
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
G A+ L+ GD IL +NG+ ++
Sbjct: 34 GGAAEAGGLQEGDRILSINGQDLEN 58
>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ
family. This family consists of a set proteins various
designated DegP, heat shock protein HtrA, and protease
DO. The ortholog in Pseudomonas aeruginosa is designated
MucD and is found in an operon that controls mucoid
phenotype. This family also includes the DegQ (HhoA)
paralog in E. coli which can rescue a DegP mutant, but
not the smaller DegS paralog, which cannot. Members of
this family are located in the periplasm and have
separable functions as both protease and chaperone.
Members have a trypsin domain and two copies of a PDZ
domain. This protein protects bacteria from thermal and
other stresses and may be important for the survival of
bacterial pathogens.// The chaperone function is
dominant at low temperatures, whereas the proteolytic
activity is turned on at elevated temperatures [Protein
fate, Protein folding and stabilization, Protein fate,
Degradation of proteins, peptides, and glycopeptides].
Length = 428
Score = 35.7 bits (83), Expect = 6e-04
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
GSPA+K+ L+ GD I VNGK
Sbjct: 267 GSPAEKAGLKAGDVITSVNGKPISS 291
Score = 26.0 bits (58), Expect = 1.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 30 GSPADKSDLEIGDEILEVNGK 50
GSPA ++ L+ GD IL VN +
Sbjct: 372 GSPAARAGLQPGDVILSVNQQ 392
>gnl|CDD|221961 pfam13180, PDZ_2, PDZ domain.
Length = 81
Score = 33.8 bits (78), Expect = 7e-04
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 29 YGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
GSPA K+ L+ GD IL ++GK EVI
Sbjct: 22 EGSPAAKAGLKPGDIILSIDGKKVNSLTELIEVI 55
>gnl|CDD|234035 TIGR02860, spore_IV_B, stage IV sporulation protein B. SpoIVB, the
stage IV sporulation protein B of endospore-forming
bacteria such as Bacillus subtilis, is a serine
proteinase, expressed in the spore (rather than mother
cell) compartment, that participates in a proteolytic
activation cascade for Sigma-K. It appears to be
universal among endospore-forming bacteria and occurs
nowhere else [Cellular processes, Sporulation and
germination].
Length = 402
Score = 33.1 bits (76), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 20 ETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFK 53
ET GK+ SP +++ ++IGD IL++NG+ K
Sbjct: 116 ETEKGKIH---SPGEEAGIQIGDRILKINGEKIK 146
>gnl|CDD|223343 COG0265, DegQ, Trypsin-like serine proteases, typically
periplasmic, contain C-terminal PDZ domain
[Posttranslational modification, protein turnover,
chaperones].
Length = 347
Score = 32.2 bits (73), Expect = 0.008
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 30 GSPADKSDLEIGDEILEVNGK 50
GSPA K+ ++ GD I VNGK
Sbjct: 280 GSPAAKAGIKAGDIITAVNGK 300
>gnl|CDD|238490 cd00990, PDZ_glycyl_aminopeptidase, PDZ domain associated with
archaeal and bacterial M61 glycyl-aminopeptidases. May
be responsible for substrate recognition and/or
binding, as most PDZ domains bind C-terminal
polypeptides, and binding to internal (non-C-terminal)
polypeptides and even to lipids has been demonstrated.
In this subfamily of protease-associated PDZ domains a
C-terminal beta-strand is presumed to form the
peptide-binding groove base, a circular permutation
with respect to PDZ domains found in Eumetazoan
signaling proteins.
Length = 80
Score = 30.9 bits (70), Expect = 0.012
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 31 SPADKSDLEIGDEILEVNG 49
SPADK+ L GDE++ VNG
Sbjct: 23 SPADKAGLVAGDELVAVNG 41
>gnl|CDD|152310 pfam11874, DUF3394, Domain of unknown function (DUF3394). This
domain is functionally uncharacterized. This domain is
found in bacteria. This presumed domain is about 190
amino acids in length. This domain is found associated
with pfam06808.
Length = 183
Score = 30.6 bits (70), Expect = 0.033
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 23 DGKVKL----YGSPADKSDLEIGDEILEV 47
GKV + +GSPA+K+ ++ EI+EV
Sbjct: 121 GGKVIVDEVEFGSPAEKAGIDFDWEIVEV 149
>gnl|CDD|226483 COG3975, COG3975, Predicted protease with the C-terminal PDZ domain
[General function prediction only].
Length = 558
Score = 30.5 bits (69), Expect = 0.036
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFK 53
G PA K+ L GD+I+ +NG + +
Sbjct: 472 GGPAYKAGLSPGDKIVAINGISDQ 495
>gnl|CDD|182820 PRK10898, PRK10898, serine endoprotease; Provisional.
Length = 353
Score = 30.4 bits (69), Expect = 0.037
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 1 MSTSPSHMIDLKGYCIIIAE-TPDGKVKLYGSPADKSDLEIGDEILEVNGK 50
+ + L+G I++ E +PDG PA K+ +++ D I+ VN K
Sbjct: 268 LHAQGGGIDQLQG--IVVNEVSPDG-------PAAKAGIQVNDLIISVNNK 309
>gnl|CDD|225185 COG2302, COG2302, Uncharacterized conserved protein, contains
S4-like domain [Function unknown].
Length = 257
Score = 30.4 bits (69), Expect = 0.042
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 12/44 (27%)
Query: 24 GKVKLYGSPADKSD--LEIGD----------EILEVNGKTFKDN 55
GKVK+ DK+ ++ GD +ILE+NG T KD
Sbjct: 205 GKVKVNWKVVDKASYEVQEGDLISIRGFGRLKILEINGVTKKDK 248
>gnl|CDD|223821 COG0750, COG0750, Predicted membrane-associated Zn-dependent
proteases 1 [Cell envelope biogenesis, outer membrane].
Length = 375
Score = 30.2 bits (68), Expect = 0.043
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 23 DGKVKLYGSPADKSDLEIGDEILEVNGKTFKD 54
G+V S A + L GD I+ V+G+
Sbjct: 133 VGEVAP-KSAAALAGLRPGDRIVAVDGEKVAS 163
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 30.0 bits (68), Expect = 0.056
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 23 DGKVKLYGSPADKSDLEIGD---EILEVNGKTFKDNCN 57
DG + LYG P K +I D E+LE +G FK N
Sbjct: 158 DGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVR 195
>gnl|CDD|232883 TIGR00225, prc, C-terminal peptidase (prc). A C-terminal
peptidase with different substrates in different
species including processing of D1 protein of the
photosystem II reaction center in higher plants and
cleavage of a peptide of 11 residues from the precursor
form of penicillin-binding protein in E.coli E.coli and
H influenza have the most distal branch of the tree and
their proteins have an N-terminal 200 amino acids that
show no homology to other proteins in the database
[Protein fate, Degradation of proteins, peptides, and
glycopeptides, Protein fate, Protein modification and
repair].
Length = 334
Score = 30.0 bits (68), Expect = 0.064
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 30 GSPADKSDLEIGDEILEVNGK 50
GSPA+K+ ++ GD+I+++NGK
Sbjct: 72 GSPAEKAGIKPGDKIIKINGK 92
>gnl|CDD|182723 PRK10779, PRK10779, zinc metallopeptidase RseP; Provisional.
Length = 449
Score = 28.9 bits (65), Expect = 0.13
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 30 GSPADKSDLEIGDEILEVNGK 50
S A K+ L+ GD I++V+G+
Sbjct: 231 NSAASKAGLQAGDRIVKVDGQ 251
>gnl|CDD|177681 PLN00049, PLN00049, carboxyl-terminal processing protease;
Provisional.
Length = 389
Score = 26.6 bits (59), Expect = 0.95
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 16 IIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKT 51
+++A P G PA ++ + GD IL ++G +
Sbjct: 105 VVVAPAP-------GGPAARAGIRPGDVILAIDGTS 133
>gnl|CDD|232801 TIGR00054, TIGR00054, RIP metalloprotease RseP. Members of this
nearly universal bacterial protein family are regulated
intramembrane proteolysis (RIP) proteases. Older and
synonymous gene symbols include yaeL in E. coli, mmpA in
Caulobacter crescentus, etc. This family includes a
region that hits the PDZ domain, found in a number of
proteins targeted to the membrane by binding to a
peptide ligand. The N-terminal region of this family
contains a perfectly conserved motif HEXGH as found in a
number of metalloproteinases, where the Glu is the
active site and the His residues coordinate the metal
cation [Protein fate, Degradation of proteins, peptides,
and glycopeptides].
Length = 419
Score = 26.7 bits (59), Expect = 1.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 31 SPADKSDLEIGDEILEVNGKTFK 53
SPA+K+ L+ GD I +NG+ +
Sbjct: 213 SPAEKAGLKEGDYIQSINGEKLR 235
>gnl|CDD|218506 pfam05219, DREV, DREV methyltransferase. This family contains DREV
protein homologues from several eukaryotes. The function
of this protein is unknown. However, these proteins
appear to be related to other methyltransferases
(Bateman A pers obs).
Length = 265
Score = 26.0 bits (57), Expect = 1.5
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 42 DEILEVNGKTFKDNCNH 58
+LE NG +F++
Sbjct: 207 RPLLENNGASFEEEVAR 223
>gnl|CDD|235619 PRK05826, PRK05826, pyruvate kinase; Provisional.
Length = 465
Score = 25.9 bits (58), Expect = 1.7
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 22/60 (36%)
Query: 8 MIDLKGYCIIIAETPDG--------KVKLYGSPADKS--------------DLEIGDEIL 45
++DLKG I + + +G K L ++ D++ GD +L
Sbjct: 66 LLDLKGPKIRVGKFKEGKITLKTGDKFTLDTDQKEEGDKERVGVDYKGLPKDVKPGDILL 125
>gnl|CDD|226011 COG3480, SdrC, Predicted secreted protein containing a PDZ domain
[Signal transduction mechanisms].
Length = 342
Score = 24.7 bits (54), Expect = 4.0
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFK 53
SP K LE GD I+ V+G+ F
Sbjct: 140 NSPF-KGKLEAGDTIIAVDGEPFT 162
>gnl|CDD|238486 cd00986, PDZ_LON_protease, PDZ domain of ATP-dependent LON serine
proteases. Most PDZ domains bind C-terminal
polypeptides, though binding to internal
(non-C-terminal) polypeptides and even to lipids has
been demonstrated. In this bacterial subfamily of
protease-associated PDZ domains a C-terminal
beta-strand is thought to form the peptide-binding
groove base, a circular permutation with respect to PDZ
domains found in Eumetazoan signaling proteins.
Length = 79
Score = 24.3 bits (53), Expect = 4.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
G PA L+ GD I+ V+GK FK+ E+I +I
Sbjct: 18 GMPA-AGKLKAGDHIIAVDGKPFKEA---EELIDYIQ 50
>gnl|CDD|238491 cd00991, PDZ_archaeal_metalloprotease, PDZ domain of archaeal
zinc metalloprotases, presumably membrane-associated or
integral membrane proteases, which may be involved in
signalling and regulatory mechanisms. May be
responsible for substrate recognition and/or binding,
as most PDZ domains bind C-terminal polypeptides, and
binding to internal (non-C-terminal) polypeptides and
even to lipids has been demonstrated. In this subfamily
of protease-associated PDZ domains a C-terminal
beta-strand forms the peptide-binding groove base, a
circular permutation with respect to PDZ domains found
in Eumetazoan signaling proteins.
Length = 79
Score = 23.9 bits (52), Expect = 5.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 30 GSPADKSDLEIGDEILEVNGKT 51
GSPA+ + L GD I +NG
Sbjct: 20 GSPAENAVLHTGDVIYSINGTP 41
>gnl|CDD|235708 PRK06131, PRK06131, dihydroxy-acid dehydratase; Validated.
Length = 571
Score = 24.4 bits (54), Expect = 5.9
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 45 LEVNGKTFKDNC----NHN-EVITHIHDP 68
L VNGKT +N +N +VI + +P
Sbjct: 339 LTVNGKTLGENLAGAPVYNDDVIRPLDNP 367
>gnl|CDD|188731 cd09345, LIM2_FHL, The second LIM domain of Four and a half LIM
domains protein (FHL). The second LIM domain of Four
and a half LIM domains protein (FHL): LIM-only protein
family consists of five members, designated FHL1, FHL2,
FHL3, FHL5 and LIMPETin. The first four members are
composed of four complete LIM domains arranged in
tandem and an N-terminal single zinc finger domain with
a consensus sequence equivalent to the C-terminal half
of a LIM domain. LIMPETin is an exception, containing
six LIM domains. FHL1, 2 and 3 are predominantly
expressed in muscle tissues, and FHL5 is highly
expressed in male germ cells. FHL proteins exert their
roles as transcription co-activators or co-repressors
through a wide array of interaction partners. For
example, FHL1 binds to Myosin-binding protein C,
regulating myosin filament formation and sarcomere
assembly. FHL2 has shown to interact with more than 50
different proteins, including receptors, structural
proteins, transcription factors and cofactors, signal
transducers, splicing factors, DNA replication and
repair enzymes, and metabolic enzymes. FHL3 int eracts
with many transcription factors, such as CREB,
BKLF/KLF3, CtBP2, MyoD, and MZF_1. FHL5 is a
tissue-specific coactivator of CREB/CREM family
transcription factors. LIM domains are 50-60 amino
acids in size and share two characteristic zinc finger
motifs. The two zinc fingers contain eight conserved
residues, mostly cysteines and histidines, which
coordinately bond to two zinc atoms. LIM domains
function as adaptors or scaffolds to support the
assembly of multimeric protein complexes.
Length = 54
Score = 23.0 bits (50), Expect = 7.9
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 41 GDEILEVNGKTFKDNC 56
G + +E GK + + C
Sbjct: 11 GSKKMEYKGKFWHEKC 26
>gnl|CDD|183956 PRK13293, PRK13293, F420-0--gamma-glutamyl ligase; Reviewed.
Length = 245
Score = 23.7 bits (52), Expect = 9.6
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 16 IIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKD 54
I+IA T K + G D D+ + +E+ K KD
Sbjct: 36 IVIASTIVSKAE--GRVIDLDDITPSERAIEIAKKLGKD 72
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.135 0.402
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,475,122
Number of extensions: 256816
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 35
Length of query: 69
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 30
Effective length of database: 9,207,796
Effective search space: 276233880
Effective search space used: 276233880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.3 bits)