RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16960
(69 letters)
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 46.6 bits (111), Expect = 6e-09
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
GSPA+ S L++ DEI+ +N F + E +
Sbjct: 38 GSPAEFSQLQVDDEIIAINNTKF-SYNDSKEWEEAMA 73
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 44.3 bits (105), Expect = 6e-08
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GS A+++ L +GD+I EVNG + ++ + +
Sbjct: 46 GSSAERAGLCVGDKITEVNGLSL-ESTTMGSAVKVL 80
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 43.8 bits (104), Expect = 7e-08
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GS A +S L GD ++ ++G D H E I
Sbjct: 35 GSKAAQSQLSQGDLVVAIDGVNT-DTMTHLEAQNKI 69
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 45.7 bits (108), Expect = 7e-08
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G AD L++GDEI+ +NG + +C H EVI I
Sbjct: 120 GGQADSVGLQVGDEIVRINGYSIS-SCTHEEVINLI 154
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 43.8 bits (104), Expect = 7e-08
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
GSPAD L GD+IL VN K +H +V+ I
Sbjct: 33 GSPADFVGLRAGDQILAVNEINVK-KASHEDVVKLIG 68
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 44.4 bits (105), Expect = 9e-08
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GS A+ S L++GD+ILEVNG++F N H+E + +
Sbjct: 56 GSEAEGSGLKVGDQILEVNGRSF-LNILHDEAVRLL 90
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 43.9 bits (104), Expect = 1e-07
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
GS A ++L GD IL ++G ++ H + I
Sbjct: 39 GSKAAAANLCPGDVILAIDGFGT-ESMTHADAQDRIK 74
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 43.9 bits (104), Expect = 1e-07
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
GS A+K L +GD+IL VN K+ H E +
Sbjct: 45 GSLAEKEGLRVGDQILRVNDKSL-ARVTHAEAV 76
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 43.0 bits (102), Expect = 1e-07
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
A +DL GD I+ +NG++ + H E + I
Sbjct: 36 RGKAKDADLRPGDIIVAINGESA-EGMLHAEAQSKI 70
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 43.5 bits (103), Expect = 1e-07
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
S A ++ L+ GD++L VN F + H++ +
Sbjct: 51 DSDAHRAGLQEGDQVLAVNDVDF-QDIEHSKAV 82
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 43.0 bits (102), Expect = 2e-07
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GS A + L GD I +NG++ + H E I
Sbjct: 42 GSKAALAALCPGDLIQAINGEST-ELMTHLEAQNRI 76
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 42.7 bits (101), Expect = 2e-07
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GSPA+K+ L GD ++EVNG+ + H +V++ I
Sbjct: 37 GSPAEKAGLLAGDRLVEVNGENVE-KETHQQVVSRI 71
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 42.7 bits (101), Expect = 2e-07
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GSPA +S L D ++EVNG+ + H EV+ I
Sbjct: 38 GSPAARSGLRAQDRLIEVNGQNVE-GLRHAEVVASI 72
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 42.6 bits (101), Expect = 2e-07
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A ++++ IGD +L ++G H E I
Sbjct: 37 GGKAAQANVRIGDVVLSIDGINA-QGMTHLEAQNKI 71
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 42.7 bits (101), Expect = 2e-07
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A ++ + +GD +L ++G+ + H E I
Sbjct: 37 GGKAAQAGVAVGDWVLSIDGENA-GSLTHIEAQNKI 71
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 42.7 bits (101), Expect = 2e-07
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A ++ + IGD +L ++G + H E I
Sbjct: 39 GGKASQAHVRIGDVVLSIDGISA-QGMTHLEAQNKI 73
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 42.7 bits (101), Expect = 3e-07
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
G A K+ ++ GD I++VNG N +H EV+ I
Sbjct: 39 GGAAMKAGVKEGDRIIKVNGTMVT-NSSHLEVVKLIK 74
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 42.9 bits (101), Expect = 3e-07
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
GS + + LEIGD+I+EVNG F N +H E +
Sbjct: 51 GSLSAEVGLEIGDQIVEVNGVDFS-NLDHKEAV 82
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 42.3 bits (100), Expect = 3e-07
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
GS A ++L IGD I ++G+ N H E I
Sbjct: 37 GSKAALANLCIGDVITAIDGENT-SNMTHLEAQNRIK 72
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 42.4 bits (100), Expect = 3e-07
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
GSPA ++ L GD I +NG++ H +V+ +
Sbjct: 44 GSPAQEAGLRAGDLITHINGESV-LGLVHMDVVELLL 79
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 42.3 bits (100), Expect = 3e-07
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
A+ +DL GD I+ +NG++ +N H E + I
Sbjct: 40 RGKAEAADLRPGDIIVAINGQSA-ENMLHAEAQSKI 74
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 41.9 bits (99), Expect = 4e-07
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G PAD + LE D I+EVNG + + +V+ I
Sbjct: 37 GGPADLAGLEDEDVIIEVNGVNVL-DEPYEKVVDRI 71
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 42.0 bits (99), Expect = 4e-07
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
SPA + L GD I VNG + H E++ I
Sbjct: 47 SSPAQLAGLTPGDTIASVNGLNV-EGIRHREIVDII 81
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 42.0 bits (99), Expect = 5e-07
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
A ++ + D ++EVNG+ + + +H EV+ +
Sbjct: 42 QGVAMRAGVLADDHLIEVNGENVE-DASHEEVVEKV 76
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding
protein; PDZ domain, cytoplasm, membrane, polymorphism,
protein binding; 2.70A {Homo sapiens}
Length = 104
Score = 42.1 bits (99), Expect = 5e-07
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67
SPA + L+ GD + +NG + + + +V+ I
Sbjct: 58 DSPAHCAGLQAGDVLANINGVST-EGFTYKQVVDLIRS 94
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium
channel 3 chimera; PDZ domain, PDZ binding, GIRK3
regulation, early endosomes; 1.68A {Rattus norvegicus}
PDB: 3qdo_A 3qgl_A
Length = 107
Score = 42.0 bits (99), Expect = 5e-07
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G AD++ + GD ILEVNG + H +V+ I
Sbjct: 53 GGAADRAGVRKGDRILEVNGVNVE-GATHKQVVDLI 87
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 42.0 bits (99), Expect = 5e-07
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GSPA+ + L+ D ++ VNGK+ + +H+ V+ I
Sbjct: 40 GSPAEAAGLKNNDLVVAVNGKSVE-ALDHDGVVEMI 74
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 41.6 bits (98), Expect = 6e-07
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
SPA+ S L D I+EVNG + H +V++ I
Sbjct: 43 DSPAEASGLRAQDRIVEVNGVCME-GKQHGDVVSAI 77
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 41.6 bits (98), Expect = 6e-07
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G PA+++ L+ D +L++N + + + E+ I
Sbjct: 34 GGPAERAGLQQLDTVLQLNERPVE-HWKCVELAHEI 68
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 117
Score = 42.1 bits (99), Expect = 6e-07
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GS A ++ LE GD++LE NG + + + I
Sbjct: 52 GSIAHQAGLEYGDQLLEFNGINLR-SATEQQARLII 86
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 41.6 bits (98), Expect = 6e-07
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G PA+++ L+ D +L++N + + + E+ I
Sbjct: 46 GGPAERAGLQQLDTVLQLNERPVE-HWKCVELAHEI 80
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens}
PDB: 3nfl_A 2vph_A
Length = 107
Score = 41.7 bits (98), Expect = 7e-07
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 28 LYGSPADKSD--LEIGDEILEVNGKTFKDNCNHNEVITHIH 66
G+PAD L GD+++ +NG+ H++V+ I
Sbjct: 51 APGTPADLCVPRLNEGDQVVLINGRDI-AEHTHDQVVLFIK 90
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 41.7 bits (98), Expect = 8e-07
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
A + + GD I+ + G K +EV+ +
Sbjct: 46 HCSASLAGAKEGDYIVSIQGVDCK-WLTVSEVMKLLK 81
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell
adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 41.7 bits (98), Expect = 8e-07
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
SPA K LE GD+IL VN F N E + +
Sbjct: 61 DSPAAKEGLEEGDQILRVNNVDFT-NIIREEAVLFL 95
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 41.2 bits (97), Expect = 8e-07
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G PA K+ ++ GD ++ V G++ + H E ++ I
Sbjct: 40 GLPAKKAGMQAGDRLVAVAGESVE-GLGHEETVSRI 74
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 41.8 bits (98), Expect = 1e-06
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 30 GSPADKSD--LEIGDEILEVNGKTFKDNCNHNEVITHIH 66
G+PAD L GD+++ +NG+ H++V+ I
Sbjct: 51 GTPADLCVPRLNEGDQVVLINGRDI-AEHTHDQVVLFIK 88
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 40.8 bits (96), Expect = 1e-06
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
P D L+ D +L+VN + + V+ I
Sbjct: 42 AGPGDLGGLKPYDRLLQVNHVRT-RDFDCCLVVPLI 76
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 41.4 bits (97), Expect = 1e-06
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G PA ++ L GD I++VNG++ +++VI I
Sbjct: 71 GGPAFEAGLCTGDRIIKVNGESV-IGKTYSQVIALI 105
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 3; structural genomics consortium, SGC, PDZ
domain, signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 40.6 bits (95), Expect = 2e-06
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 12 KGYCIIIAETPDG-KVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67
KG+ IA++P G KVK+ L+ GD I E+ + + N H +V+ +
Sbjct: 23 KGFGFAIADSPTGQKVKMILDSQWCQGLQKGDIIKEIYHQNVQ-NLTHLQVVEVLKQ 78
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 40.0 bits (94), Expect = 3e-06
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GSPA+ + L+ D ++ VNGK+ + +H+ V+ I
Sbjct: 39 GSPAEAAGLKNNDLVVAVNGKSVE-ALDHDGVVEMI 73
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI,
signaling protein; 1.80A {Mus musculus}
Length = 106
Score = 40.1 bits (94), Expect = 3e-06
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GSPA+K+ L GD +L +NG D H +V+ +
Sbjct: 36 GSPAEKAGLLDGDRVLRINGVFV-DKEEHAQVVELV 70
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding,
protein-binding, RHOB, nitration, cytoplasm, PDZ
domain, CAsp8; 1.82A {Homo sapiens}
Length = 109
Score = 40.2 bits (94), Expect = 3e-06
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
A + GD I+ + K +EV+ +
Sbjct: 54 YCSASVAGAREGDYIVSIQLVDCK-WLTLSEVMKLL 88
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 39.6 bits (93), Expect = 4e-06
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G AD+++ L +GD IL VNG+ + H+E + +
Sbjct: 40 GLAADQTEALFVGDAILSVNGEDL-SSATHDEAVQAL 75
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70
kDa, Na/PI cotransporter C- terminal-associated
protein, NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 39.8 bits (93), Expect = 4e-06
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
GSPA+K+ L GD +L +NG D H +V+
Sbjct: 48 GSPAEKAGLLDGDRVLRINGVFV-DKEEHAQVV 79
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 39.2 bits (91), Expect = 5e-06
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
A K L+ GDEILE+N + N + + + PS
Sbjct: 45 TGLASKKGLKAGDEILEINNRAADA-LNSSMLKDFLSQPS 83
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 39.4 bits (92), Expect = 6e-06
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
G A ++ L +GD ++EVNG+ H +V+ I
Sbjct: 55 GGVAWRAGLRMGDFLIEVNGQNV-VKVGHRQVVNMIR 90
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 39.0 bits (91), Expect = 6e-06
Identities = 8/38 (21%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67
G A++ + +G I+E+NG++ H +++ + +
Sbjct: 41 GGIAERGGVRVGHRIIEINGQSV-VATPHEKIVHILSN 77
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing
isoform B; GOPC PDZ domain, structural protein; NMR
{Homo sapiens}
Length = 103
Score = 39.3 bits (92), Expect = 6e-06
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G PAD+ L +GD IL VNG + H E +T +
Sbjct: 45 GQPADRCGGLHVGDAILAVNGVNL-RDTKHKEAVTIL 80
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 39.3 bits (92), Expect = 6e-06
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
PA ++ + +GD++LEVNG H+E + +
Sbjct: 56 EGPAARAGVRVGDKLLEVNGVAL-QGAEHHEAVEAL 90
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A
{Homo sapiens}
Length = 95
Score = 38.9 bits (91), Expect = 6e-06
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G D + +GD I +NG+ H +V +
Sbjct: 38 GGVIDSVKTICVGDHIESINGENIV-GWRHYDVAKKL 73
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 38.9 bits (91), Expect = 7e-06
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 12 KGYCIIIAETPDGK-VKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
+G+ IA++P G+ VK L GD I+E+N + + N +H EV+ +
Sbjct: 21 QGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQ-NLSHTEVVDIL 74
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 38.8 bits (91), Expect = 8e-06
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
PA ++ + +GD++LEVNG H+E + +
Sbjct: 44 EGPAARAGVRVGDKLLEVNGVAL-QGAEHHEAVEAL 78
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation,
cell projection, disease mutation, membrane,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 216
Score = 40.1 bits (93), Expect = 9e-06
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
SPA+ S L D I+EVNG + H +V++ I
Sbjct: 43 DSPAEASGLRAQDRIVEVNGVCME-GKQHGDVVSAI 77
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 38.9 bits (91), Expect = 1e-05
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
GS A + L+ D+IL +NG+ H + I+ +
Sbjct: 59 GSVAHRDGRLKETDQILAINGQALDQTITHQQAISIL 95
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 38.5 bits (90), Expect = 1e-05
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
G + L +GDEI E+NG + N ++
Sbjct: 35 GGMIHRQGTLHVGDEIREINGISVA-NQTVEQLQ 67
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ
domain, protein, acetylation, cell projection, disease
mutation, membrane; NMR {Homo sapiens}
Length = 128
Score = 39.1 bits (91), Expect = 1e-05
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
SPA+ S L D I+EVNG + H +V++ I
Sbjct: 43 DSPAEASGLRAQDRIVEVNGVCM-EGKQHGDVVSAI 77
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 38.8 bits (90), Expect = 1e-05
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A ++ L +GD ++EVNG+ H +V+ I
Sbjct: 75 GGVAWRAGLRMGDFLIEVNGQNV-VKVGHRQVVNMI 109
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM,
tight junction, cell adhesio; 2.50A {Homo sapiens} PDB:
3tsw_A 3lh5_A
Length = 391
Score = 39.8 bits (92), Expect = 1e-05
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
SPA K LE GD+IL VN F N E +
Sbjct: 41 DSPAAKEGLEEGDQILRVNNVDF-TNIIREEAV 72
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 39.0 bits (91), Expect = 1e-05
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
SPA L GD++L++NG+ + ++ +
Sbjct: 37 NSPASLVGLRFGDQVLQINGENC-AGWSSDKAHKVL 71
Score = 32.5 bits (74), Expect = 0.003
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
S A ++ L I E+NG+ +++ +
Sbjct: 117 DSSAARNGLLTEHNICEINGQNVI-GLKDSQIADILSTS 154
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 38.0 bits (89), Expect = 1e-05
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 12 KGYCIIIAETPDGK---VKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G+ IA++P G VK L+ GD I+EVN K + HN+V+ +
Sbjct: 14 MGFGFTIADSPGGGGQRVKQIVDSPRSRGLKEGDLIVEVNKKNVQ-ALTHNQVVDML 69
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L
homolog; PDZ domain, cellular signaling, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 38.3 bits (89), Expect = 2e-05
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
SPA++ L+IGD ++ +NG ++ E + D S
Sbjct: 55 DSPAERCGVLQIGDRVMAINGIPT-EDSTFEEANQLLRDSS 94
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 38.5 bits (89), Expect = 2e-05
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
A K L+ GDEILE+N + N + + + PS
Sbjct: 54 TGLASKKGLKAGDEILEINNRAADA-LNSSMLKDFLSQPS 92
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 38.1 bits (89), Expect = 2e-05
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G PAD S +L GD+IL VNG + N +H + +
Sbjct: 45 GGPADLSGELRKGDQILSVNGVDLR-NASHEQAAIAL 80
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex,
peptide binding protein; 1.54A {Rattus norvegicus}
SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 38.2 bits (89), Expect = 2e-05
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G PAD S +L GD+IL VNG + N +H + +
Sbjct: 48 GGPADLSGELRKGDQILSVNGVDLR-NASHEQAAIAL 83
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 37.7 bits (88), Expect = 2e-05
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 23 DGKVK--LYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
+GK+ + S A ++ L I E+NG+ +++ +
Sbjct: 24 NGKITSIVKDSSAARNGLLTEHNICEINGQNVI-GLKDSQIADIL 67
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 37.8 bits (88), Expect = 2e-05
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A L++G ILEVNG T + H E I
Sbjct: 42 GGSAHNCGQLKVGHVILEVNGLTLR-GKEHREAARII 77
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1qav_B
Length = 112
Score = 38.2 bits (89), Expect = 2e-05
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
G A++S ++ GD IL VN + + +++ +
Sbjct: 36 GGAAEQSGLIQAGDIILAVNDRPLV-DLSYDSAL 68
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 37.7 bits (88), Expect = 2e-05
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G PAD S +L GD IL VNG + N H + +
Sbjct: 49 GGPADLSGELRRGDRILSVNGVNLR-NATHEQAAAAL 84
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 37.8 bits (88), Expect = 2e-05
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G PAD+ L +GD IL VNG + H E +T +
Sbjct: 63 GQPADRCGGLHVGDAILAVNGVNL-RDTKHKEAVTIL 98
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 38.1 bits (88), Expect = 3e-05
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G PA+ + L+IGD+I++VNG H++ +
Sbjct: 74 GGPAEIAGLQIGDKIMQVNGWDMT-MVTHDQARKRL 108
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 36.9 bits (86), Expect = 3e-05
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
S A + +++ GD +L++NG +N + + T I
Sbjct: 31 DSLAARDGNIQEGDVVLKINGTVT-ENMSLTDAKTLI 66
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 37.3 bits (87), Expect = 3e-05
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
G + L +GDEILE+NG N + +++ + +
Sbjct: 46 GGMIHRQGSLHVGDEILEINGTNVT-NHSVDQLQKAMKETK 85
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 37.8 bits (88), Expect = 3e-05
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
S D+S L GD IL ++G + ++C+ E + S
Sbjct: 52 ASVVDRSGALHPGDHILSIDGTSM-EHCSLLEATKLLASIS 91
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 38.6 bits (90), Expect = 3e-05
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
G A + L + D IL VN H+ + + +
Sbjct: 45 GGAAAQDGRLRVNDSILFVNEVDV-REVTHSAAVEALKEAG 84
Score = 36.3 bits (84), Expect = 2e-04
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A K L+IGD+IL VN ++ H + + +
Sbjct: 140 GGAAHKDGRLQIGDKILAVNSVGL-EDVMHEDAVAAL 175
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 37.4 bits (87), Expect = 3e-05
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
A + ++ G+E+L +NGK+ K H++ + +
Sbjct: 52 NGLASQEGTIQKGNEVLSINGKSLK-GTTHHDALAILRQAR 91
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 37.4 bits (87), Expect = 4e-05
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
SPA K+ L+ GD+ILEV+G + N +H+E + I
Sbjct: 60 DSPAGKTNALKTGDKILEVSGVDLQ-NASHSEAVEAI 95
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 36.9 bits (86), Expect = 4e-05
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
G AD+S + +GDE+ EVNG + + E+I
Sbjct: 38 GGAADRSGLIHVGDELREVNGIPVE-DKRPEEII 70
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 38.2 bits (88), Expect = 4e-05
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
G AD+++ L +GD IL VNG+ + H+E + +
Sbjct: 113 GLAADQTEALFVGDAILSVNGEDLS-SATHDEAVQALKKTG 152
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight
junctions, PATJ, structural genomics; NMR {Homo
sapiens}
Length = 128
Score = 37.4 bits (87), Expect = 4e-05
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVIT 63
GS AD+ L+ D+IL +N N +H + I
Sbjct: 64 GSVADRDQRLKENDQILAINHTPLDQNISHQQAIA 98
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 37.0 bits (86), Expect = 5e-05
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
SPA K+ L+ GD I+EV+G + + +H + + I
Sbjct: 49 DSPAGKNGTLKPGDRIVEVDGMDLR-DASHEQAVEAI 84
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex,
PDZ tandem, alternative splicing, cell junction,
cytoplasm; 2.30A {Rattus norvegicus}
Length = 200
Score = 37.8 bits (88), Expect = 5e-05
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
G A +SD L++GD I VNG H+E+I+ + +
Sbjct: 43 GGIAARSDQLDVGDYIKAVNGINL-AKFRHDEIISLLKNVG 82
Score = 37.4 bits (87), Expect = 7e-05
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVI 62
G PAD+ ++ GD +L V+G H E +
Sbjct: 145 GGPADREGTIKPGDRLLSVDGIRL-LGTTHAEAM 177
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 36.5 bits (85), Expect = 6e-05
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G AD+ L+ GD++L VNG + + H + + +
Sbjct: 40 GGVADRHGGLKRGDQLLSVNGVSVE-GEQHEKAVELL 75
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 37.8 bits (88), Expect = 6e-05
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
SPA++ L+IGD ++ +NG + + E + D S
Sbjct: 46 DSPAERCGVLQIGDRVMAINGIPTE-DSTFEEANQLLRDSS 85
Score = 37.1 bits (86), Expect = 9e-05
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVI 62
GS A ++ LE+GD++L ++ D+C+ + +
Sbjct: 145 GSVAHRTGTLELGDKLLAIDNIRL-DSCSMEDAV 177
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 38.0 bits (87), Expect = 6e-05
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
SPA K LE GD+IL VN F N E + + D
Sbjct: 33 DSPAAKEGLEEGDQILRVNNVDF-TNIIREEAVLFLLDLP 71
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 36.2 bits (84), Expect = 7e-05
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
S A + +++ GD +L++NG +N + + T I
Sbjct: 33 DSLAARDGNIQEGDVVLKINGTVT-ENMSLTDAKTLIERSK 72
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS,
nitric oxide synthase, oxidoreductase; NMR {Rattus
norvegicus} SCOP: b.36.1.1
Length = 127
Score = 36.8 bits (85), Expect = 8e-05
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
G A++S ++ GD IL VN + + +++ +
Sbjct: 43 GGAAEQSGLIQAGDIILAVNDRPLV-DLSYDSAL 75
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 36.0 bits (84), Expect = 8e-05
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G PAD+ ++ GD +L V+G H E ++ +
Sbjct: 42 GGPADREGTIKPGDRLLSVDGIRLL-GTTHAEAMSIL 77
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 36.7 bits (85), Expect = 9e-05
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVI 62
G A + L + DE+LEVNG + ++V
Sbjct: 75 GGLAQSTGLLAVNDEVLEVNGIEVS-GKSLDQVT 107
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 36.3 bits (84), Expect = 9e-05
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
+PA + GDEI VNG++ K EV I
Sbjct: 60 NTPAALDGTVAAGDEITGVNGRSIK-GKTKVEVAKMI 95
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 36.1 bits (84), Expect = 9e-05
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
SP+ + ++ GD I++VNG+ D
Sbjct: 45 NSPSQRGGIQDGDIIVKVNGRPLVD 69
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 36.3 bits (84), Expect = 1e-04
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
+PA + GDEI VNG++ K EV I
Sbjct: 55 NTPAALDGTVAAGDEITGVNGRSIK-GKTKVEVAKMI 90
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 36.1 bits (84), Expect = 1e-04
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVIT 63
G + L+ GD I + NG +
Sbjct: 41 GQYPEIDSKLQRGDIITKFNGDALE-GLPFQVSYA 74
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 36.3 bits (84), Expect = 1e-04
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GS AD L GDE+LE NG+ + EV I
Sbjct: 75 GSLADTVGHLRPGDEVLEWNGRLLQ-GATFEEVYNII 110
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 35.8 bits (83), Expect = 1e-04
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
PA K L+I D I+EVNG+ H++ +
Sbjct: 51 SGPAAKEGGLQIHDRIIEVNGRDLS-RATHDQAVEAF 86
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 35.7 bits (83), Expect = 1e-04
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
SPA L++GD IL +NGK + N VI I
Sbjct: 47 DSPAHLCGRLKVGDRILSLNGKDVR-NSTEQAVIDLI 82
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 113
Score = 35.9 bits (83), Expect = 1e-04
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
G A+KS L GDE+LE+NG + NEV
Sbjct: 58 GGAAEKSGLLHEGDEVLEINGIEI-RGKDVNEVF 90
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 35.9 bits (83), Expect = 1e-04
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
SPA K+ L+ GD I+EV+G + + +H + + I
Sbjct: 69 DSPAGKNGTLKPGDRIVEVDGMDLR-DASHEQAVEAI 104
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 35.4 bits (82), Expect = 1e-04
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
G A+++ + IGD IL +N + K +E I
Sbjct: 40 GGLAERTGAIHIGDRILAINSSSLK-GKPLSEAI 72
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 35.8 bits (83), Expect = 1e-04
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G + L+ GD I + NG +
Sbjct: 35 GQYPEIDSKLQRGDIITKFNGDALE-GLPFQVCYALF 70
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 35.9 bits (83), Expect = 1e-04
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 20 ETPDGKV---KLY-GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVI 62
++P GKV +Y G A++ + GDEI+ +NGK + E
Sbjct: 39 DSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVT-DYTLAEAE 85
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 35.9 bits (83), Expect = 2e-04
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVI 62
G A+++ L G ++LE NG + + EV
Sbjct: 59 GGSAEQTGKLMEGMQVLEWNGIPLT-SKTYEEVQ 91
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 36.5 bits (85), Expect = 2e-04
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
SPA+ + L+ GD I ++N
Sbjct: 292 NSPAELAGLKAGDIITQINDTKITQ 316
Score = 31.5 bits (72), Expect = 0.011
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
S ++ + GD I+ N K D
Sbjct: 396 NSAGWRAGIRPGDIIISANKKPVTD 420
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria,
peptid module, hydrolase; 2.75A {Homo sapiens} SCOP:
b.36.1.4
Length = 113
Score = 35.8 bits (83), Expect = 2e-04
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
GSPA ++ L GD IL + + ++
Sbjct: 45 GSPAHRAGLRPGDVILAIGEQMVQN 69
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 35.4 bits (82), Expect = 2e-04
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
PA ++ + +GD+I+E+NG++ + H I I
Sbjct: 46 DGPAIRNGRMRVGDQIIEINGEST-RDMTHARAIELI 81
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 36.5 bits (85), Expect = 2e-04
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
S A K+ ++ GD I +NGK
Sbjct: 296 NSSAAKAGIKAGDVITSLNGKPISS 320
Score = 31.9 bits (73), Expect = 0.008
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
G+PA + L+ GD I+ N + K+
Sbjct: 393 GTPAAQIGLKKGDVIIGANQQAVKN 417
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 36.5 bits (85), Expect = 2e-04
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
GS + K+ ++ GD I +NGK
Sbjct: 273 GSGSAKAGVKAGDIITSLNGKPLNS 297
Score = 31.5 bits (72), Expect = 0.010
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
GSPA ++ L+ D I+ VN
Sbjct: 373 GSPAAQAGLQKDDVIIGVNRDRVNS 397
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; transferase, STRU genomics, structural
genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A
{Homo sapiens}
Length = 112
Score = 35.4 bits (82), Expect = 2e-04
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
PA++S + IGDEILE+NG+T K N H+ I I
Sbjct: 59 DGPAERSGKMRIGDEILEINGETTK-NMKHSRAIELI 94
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling
protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 35.1 bits (81), Expect = 2e-04
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
PA K L+ GD+I++ NG +F N H + ++ +
Sbjct: 53 EGPASKL-LQPGDKIIQANGYSF-INIEHGQAVSLL 86
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 35.4 bits (82), Expect = 2e-04
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
A+ + GD +L VNG + + H + + +
Sbjct: 52 QGAAESDGRIHKGDRVLAVNGVSLE-GATHKQAVETL 87
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 35.1 bits (81), Expect = 2e-04
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
PA K L+ GD+I++ NG +F N H + ++ +
Sbjct: 45 EGPASKL-LQPGDKIIQANGYSF-INIEHGQAVSLL 78
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 35.1 bits (81), Expect = 2e-04
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67
G PA++S L IGD + +NG + + +
Sbjct: 47 GGPAERSGALSIGDRLTAINGTSL-VGLPLAACQAAVRE 84
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 35.1 bits (81), Expect = 3e-04
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHD 67
GSPAD+ L++GD IL VNG++ N H +++ I D
Sbjct: 53 GSPADRCAKLKVGDRILAVNGQSI-INMPHADIVKLIKD 90
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 36.1 bits (84), Expect = 3e-04
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
GSPA ++ L GD IL + + ++
Sbjct: 266 GSPAHRAGLRPGDVILAIGEQMVQN 290
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 35.0 bits (81), Expect = 3e-04
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
PA + LE+GD +L +NG++ H + + I
Sbjct: 48 DGPAQRCGRLEVGDLVLHINGEST-QGLTHAQAVERI 83
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 105
Score = 35.0 bits (81), Expect = 3e-04
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A ++ L++GD +L +NG H+ ++ +
Sbjct: 48 GGAAHRAGTLQVGDRVLSINGVDVT-EARHDHAVSLL 83
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens}
PDB: 2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 35.0 bits (81), Expect = 3e-04
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
G PA+ L+ D + VNG + DN H +
Sbjct: 49 GGPAEGQ-LQENDRVAMVNGVSM-DNVEHAFAV 79
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 35.1 bits (81), Expect = 3e-04
Identities = 7/35 (20%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVIT 63
G + ++ GD +L V+G + +E +
Sbjct: 63 GGVISRDGRIKTGDILLNVDGVEL-TEVSRSEAVA 96
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 35.7 bits (83), Expect = 3e-04
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
GS + K+ ++ GD I +NGK
Sbjct: 273 GSGSAKAGVKAGDIITSLNGKPLNS 297
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 34.7 bits (80), Expect = 3e-04
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
A + L +G +LEVN ++ H E +
Sbjct: 54 TGAAGRDGRLRVGLRLLEVNQQSL-LGLTHGEAV 86
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 35.3 bits (82), Expect = 4e-04
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
+PA+ L+ D I+ +NG++
Sbjct: 264 DTPAEAGGLKENDVIISINGQSVVS 288
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 34.7 bits (80), Expect = 4e-04
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
A + L GD+ILEVNG + N +H E IT +
Sbjct: 53 EGAAARDGRLWAGDQILEVNGVDLR-NSSHEEAITALRQTP 92
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 35.2 bits (82), Expect = 4e-04
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
PA + +++ D I+ V+ K
Sbjct: 254 DGPAANAGIQVNDLIISVDNKPAIS 278
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 34.2 bits (79), Expect = 4e-04
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A + L D +L +NG K I
Sbjct: 39 GGLAAQDGRLSSNDRVLAINGHDLK-YGTPELAAQII 74
>3e17_A Tight junction protein ZO-2; domain swapping, alternative
promoter usage, alternative splicing, cell junction,
cell membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 34.2 bits (79), Expect = 4e-04
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
A K +L GD IL++NG +N + + I
Sbjct: 31 TGLATKDGNLHEGDIILKINGTVT-ENMSLTDARKLI 66
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 34.2 bits (79), Expect = 4e-04
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A S + GDE++ +NG + E + I
Sbjct: 45 GGKAALSQKMRTGDELVNINGTPLYG--SRQEALILI 79
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 96
Score = 34.3 bits (79), Expect = 4e-04
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A L GD+IL++N + +D + + +
Sbjct: 41 GGSAHGK-LFPGDQILQMNNEPAED-LSWERAVDIL 74
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 35.3 bits (80), Expect = 4e-04
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
G A + L + D IL VN H+ + + +
Sbjct: 99 GGAAAQDGRLRVNDSILFVNEVDV-REVTHSAAVEALKEAG 138
Score = 33.3 bits (75), Expect = 0.002
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
G PAD S L GD+IL VNG + N +H + + +
Sbjct: 341 GGPADLSGELRKGDQILSVNGVDLR-NASHEQAAIALKNAG 380
Score = 24.9 bits (53), Expect = 2.4
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A K L+IGD+IL VN ++ H + + +
Sbjct: 194 GGAAHKDGRLQIGDKILAVNS-VGLEDVMHEDAVAAL 229
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 34.2 bits (79), Expect = 5e-04
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVI 62
AD+ L GDE++ V+G H VI
Sbjct: 44 MGSADRDGRLHPGDELVYVDGIPVA-GKTHRYVI 76
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 34.2 bits (79), Expect = 5e-04
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
A K L GD+ILEVNG + H+E I +
Sbjct: 40 EGAACKDGRLWAGDQILEVNGIDLR-KATHDEAINVL 75
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 34.2 bits (79), Expect = 5e-04
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A + +++ D+I+EV+G + N T +
Sbjct: 50 GGAAQRDGRIQVNDQIVEVDGISLV-GVTQNFAATVL 85
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 35.3 bits (80), Expect = 5e-04
Identities = 8/36 (22%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A++ + +G I+E+NG++ H +++ +
Sbjct: 325 GGIAERGGVRVGHRIIEINGQSV-VATAHEKIVQAL 359
Score = 31.1 bits (69), Expect = 0.016
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G PA +S L IGD+I+ +NG + I
Sbjct: 242 GGPAARSGKLSIGDQIMSINGTSL-VGLPLATCQGII 277
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 34.2 bits (79), Expect = 5e-04
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVIT 63
AD L GDE++ V+G +H V+
Sbjct: 37 LGAADTDGRLRSGDELISVDGTPVI-GKSHQLVVQ 70
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 34.1 bits (79), Expect = 5e-04
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
A+ + GD +L VNG + + H + + +
Sbjct: 43 QGAAESDGRIHKGDRVLAVNGVSLE-GATHKQAVETL 78
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 33.8 bits (78), Expect = 6e-04
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
A L+ GD+IL VNG+ K N H + +
Sbjct: 47 NGAAALDGRLQEGDKILSVNGQDLK-NLLHQDAV 79
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 34.3 bits (79), Expect = 6e-04
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
PA + IGDE+LE+N + +H I
Sbjct: 61 EGPAAADGRMRIGDELLEINNQILY-GRSHQNASAII 96
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA,
structural genomics, riken structural
genomics/proteomics initiative, unknown function; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 110
Score = 34.2 bits (79), Expect = 6e-04
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
GSPA L +GD ILEVNG + + + I
Sbjct: 46 GSPAAADGRLSLGDRILEVNGSSLL-GLGYLRAVDLI 81
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 34.3 bits (79), Expect = 7e-04
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
GS A + +++ D+I+ V+G +++V+
Sbjct: 56 GSAAYHNGHIQVNDKIVAVDGVNI-QGFANHDVV 88
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane,
cell membrane, membrane, metal-binding,
metalloprotease, transmembrane; 1.67A {Escherichia coli
k-12} PDB: 2zpl_A
Length = 95
Score = 33.8 bits (77), Expect = 7e-04
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCN-HNEVITHIHDPS 69
S A ++ + G E+ V+G D +++ I D S
Sbjct: 12 NSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDES 52
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 34.5 bits (79), Expect = 7e-04
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVIT 63
G + L+ GD I + NG +
Sbjct: 146 GQYPEIDSKLQRGDIITKFNGDAL-EGLPFQVCYA 179
Score = 30.6 bits (69), Expect = 0.018
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTF-KDNCNHNEVITHIH 66
L+I D I ++NG + +V H
Sbjct: 55 EGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFH 93
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 33.9 bits (78), Expect = 8e-04
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
A ++ L +GD I+ + G + + H + + +
Sbjct: 63 TGVAAQTQKLRVGDRIVTICGTST-EGMTHTQAVNLL 98
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 33.7 bits (77), Expect = 8e-04
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 10 DLKGYCIIIAETPDGKVKLY-------GSPADKSDLEIGDEILEVNGKTFKD 54
++ Y + D KV Y + L+ GD + +NG D
Sbjct: 20 EIFQYVRLSQVKRDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTD 71
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 33.4 bits (77), Expect = 0.001
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVIT 63
G AD L GD+IL VNG+ + N V
Sbjct: 39 GGIADADGRLMQGDQILMVNGEDVR-NATQEAVAA 72
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1,
HOST-virus interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 33.4 bits (77), Expect = 0.001
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
S + ++IGD+I+ V+G + + + +
Sbjct: 43 SSAVEHDGRIQIGDQIIAVDGTNLQ-GFTNQQAV 75
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 33.2 bits (76), Expect = 0.001
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
G + L +GD I EVNG+ + + + + S
Sbjct: 39 GGMVAQQGLLHVGDIIKEVNGQPVG--SDPRALQELLRNAS 77
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 33.6 bits (77), Expect = 0.001
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
G PAD L+ D ++ VNG ++ H+ +
Sbjct: 56 GGPADGL-LQENDRVVMVNGTPM-EDVLHSFAV 86
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 33.1 bits (76), Expect = 0.001
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVIT 63
G AD L GD++L V+G++ +
Sbjct: 48 GGAADVDGRLAAGDQLLSVDGRSLV-GLSQERAAE 81
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 33.5 bits (77), Expect = 0.001
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G AD+ L+ GD IL++ G + +V +
Sbjct: 48 GGLADRDGRLQTGDHILKIGGTNVQ-GMTSEQVAQVL 83
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 33.6 bits (77), Expect = 0.001
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G+ +++S+ ++ GDEIL++ G + E I
Sbjct: 67 GAASEQSETVQPGDEILQLGGTAMQ-GLTRFEAWNII 102
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 33.1 bits (76), Expect = 0.001
Identities = 6/37 (16%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A + +++ D ++EV+G + + + +
Sbjct: 45 GGAAHRDGRIQVNDLLVEVDGTSLV-GVTQSFAASVL 80
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 32.6 bits (75), Expect = 0.001
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVI 62
PA +E GD I+ VN H +V+
Sbjct: 35 DGPAALDGKMETGDVIVSVNDTCV-LGHTHAQVV 67
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 33.1 bits (76), Expect = 0.001
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
GS A +E D+IL V+ + ++V+
Sbjct: 54 GSAAALDGRIEPNDKILRVDDVNVQ-GMAQSDVV 86
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 33.2 bits (76), Expect = 0.001
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
A L+ GD+IL VNG+ K N H + +
Sbjct: 57 NGAAALDGRLQEGDKILSVNGQDLK-NLLHQDAVDLF 92
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 33.6 bits (77), Expect = 0.002
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDN 55
GSPA+++ L+ G I+ +NG
Sbjct: 100 GSPAEEAGLQRGHWIMMMNGDYITKK 125
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 32.6 bits (75), Expect = 0.002
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A K L+IGD +L VN + + H E + +
Sbjct: 43 GGAAQKDGRLQIGDRLLAVNNTNLQ-DVRHEEAVASL 78
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 32.6 bits (75), Expect = 0.002
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
PA K +E+GD+I+ +GK ++
Sbjct: 11 NMPA-KGKIEVGDKIISADGKNYQS 34
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 32.7 bits (75), Expect = 0.002
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
G A L + D +L VN H+ +
Sbjct: 44 GGAAAMDGRLGVNDCVLRVNEVDVS-EVVHSRAV 76
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 32.8 bits (75), Expect = 0.002
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G K L+ GD+++ +N ++ + E + I
Sbjct: 51 GGDCYKDGRLKPGDQLVSINKESMI-GVSFEEAKSII 86
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 32.8 bits (75), Expect = 0.003
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
PA + +E GD I+ +N H +V+
Sbjct: 54 DGPAAQDGKMETGDVIVYINEVCVL-GHTHADVV 86
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural
genomics, alternative splicing, cell cycle, cell
division, cell junction, coiled coil; NMR {Mus
musculus} PDB: 2ogp_A
Length = 111
Score = 32.3 bits (74), Expect = 0.003
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVIT 63
A + L+ GD ++EVNG + EV++
Sbjct: 49 RGAAIQDGRLKAGDRLIEVNGVDLA-GKSQEEVVS 82
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural
genomics, PDZ domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Length = 127
Score = 32.5 bits (74), Expect = 0.003
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
G A K L + D+++ VNG+T +++E +
Sbjct: 65 GGAAFKDGRLRMNDQLIAVNGETLL-GKSNHEAM 97
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 32.3 bits (74), Expect = 0.003
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
A + L+ GD+I+ VNG++ + H E + +
Sbjct: 63 KGAASEDGRLKRGDQIIAVNGQSLE-GVTHEEAVAIL 98
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 32.6 bits (74), Expect = 0.004
Identities = 6/37 (16%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A + +++ D ++EV+G + + + +
Sbjct: 121 GGAAHRDGRIQVNDLLVEVDGTSLV-GVTQSFAASVL 156
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 126
Score = 32.1 bits (73), Expect = 0.004
Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 2/35 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVIT 63
A L+ GD ++ V E +
Sbjct: 59 KGAAASDGILQPGDVLISVGHANVL-GYTLREFLK 92
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 32.6 bits (75), Expect = 0.004
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
G A + + G + +V+ +
Sbjct: 252 GGAAANAGVPKGVVVTKVDDRPINS 276
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 31.5 bits (72), Expect = 0.005
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A K L+IGD++L VN + + H E +T +
Sbjct: 43 GGAAHKDGKLQIGDKLLAVNSVSLE-EVTHEEAVTAL 78
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 31.6 bits (72), Expect = 0.005
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVI 62
A++S L GD ++ VN DN + E +
Sbjct: 54 DGVAERSGGLLPGDRLVSVNEYCL-DNTSLAEAV 86
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane
protein, PDZ domain, hydrolase, inner membrane,
membrane, metal-binding; HET: MLY MSE; 0.98A
{Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 31.3 bits (71), Expect = 0.005
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
S A + L+ GD I+ V+G+
Sbjct: 14 NSAASXAGLQAGDRIVXVDGQPLTQ 38
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 31.7 bits (72), Expect = 0.006
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVI 62
PA +E GD I+ VN H +V+
Sbjct: 53 DGPAALDGKMETGDVIVSVNDTCV-LGHTHAQVV 85
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 31.1 bits (71), Expect = 0.006
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
PA LE GD I ++G+
Sbjct: 15 NMPA-AGRLEAGDRIAAIDGQPINT 38
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 31.6 bits (72), Expect = 0.006
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVIT 63
A + L+ GD ++EVNG + EV++
Sbjct: 68 RGAAIQDGRLKAGDRLIEVNGVDLV-GKSQEEVVS 101
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 31.8 bits (73), Expect = 0.006
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
G PA+K+ GD I+ V+G K
Sbjct: 109 GGPAEKAGARAGDVIVTVDGTAVKG 133
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 31.6 bits (72), Expect = 0.007
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
G A K L++GD +L VN + + H E +
Sbjct: 64 GGAAQKDGRLQVGDRLLMVNNYSLE-EVTHEEAV 96
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 31.4 bits (71), Expect = 0.008
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
GSPA K L G I +NG +
Sbjct: 35 GSPASKV-LTPGLVIESINGMPTSN 58
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A*
1mc7_A
Length = 108
Score = 30.9 bits (70), Expect = 0.010
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
G +E GD +L+VN F +N ++++ +
Sbjct: 43 GGAVAADGRIEPGDMLLQVNDMNF-ENMSNDDAV 75
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes}
PDB: 2kjk_A 3i1e_A
Length = 100
Score = 30.7 bits (70), Expect = 0.010
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
PA L GD I E++G FK
Sbjct: 17 DVPAADV-LHAGDLITEIDGNAFKS 40
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 30.9 bits (69), Expect = 0.013
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 31 SPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
SP +++ + GD ILE+NG + EV I S
Sbjct: 57 SPNNRNAIHPGDRILEINGTPVR-TLRVEEVEDAIKQTS 94
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 31.1 bits (69), Expect = 0.013
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
A + L GD+I+ ++ +
Sbjct: 506 DESAYHAGLSAGDKIIAIDHLQATE 530
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 30.2 bits (68), Expect = 0.014
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 11 LKGYCIIIAETPDGKVKLY-------GSPADKSDLEIGDEILEVNGKTFKD 54
+ Y + D KV Y + L+ GD + +NG D
Sbjct: 3 IFQYVRLSQVKRDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTD 53
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 30.2 bits (68), Expect = 0.022
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVI 62
S A K + GD I+++NG + N E +
Sbjct: 58 NSIAAKDGRIREGDRIIQINGIEVQ---NREEAV 88
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 29.4 bits (65), Expect = 0.069
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 9 IDLKGYCIIIAETPDGKV--KLYGSPADKSDLEI-GDEILEVNGKTFKDNCNHNEVI 62
L G ++A+ G + SP + ++ G I +++G+T N V+
Sbjct: 743 FKLDGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGSNIYRVL 799
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 28.7 bits (65), Expect = 0.088
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
PA LE D I +V+ K
Sbjct: 67 NMPA-NGHLEKYDVITKVDDKEIAS 90
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown
function; 1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 28.4 bits (62), Expect = 0.12
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
PA K L+ GD+I++ NG +F N H + ++ +
Sbjct: 34 EGPASKL-LQPGDKIIQANGYSF-INIEHGQAVSLLKTFQ 71
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.24
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 28/59 (47%)
Query: 1 MSTSPSHMIDL------------------KGYCIIIAETPDGKVKLYGSPADKSDLEIG 41
+H++D G +I+A T D +P D + G
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLD------INPDD----DYG 542
Score = 25.4 bits (55), Expect = 1.6
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 13/61 (21%)
Query: 3 TSPSHMIDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
PS M+ + + K + PA K +EI L VNG N V+
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHL-PAGK-QVEIS---L-VNGAK-------NLVV 379
Query: 63 T 63
+
Sbjct: 380 S 380
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 27.6 bits (62), Expect = 0.25
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 11/36 (30%)
Query: 30 GSPADKSDLE-----------IGDEILEVNGKTFKD 54
PA K+ L+ +GD I VNG +
Sbjct: 261 SGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSN 296
>2mad_H Methylamine dehydrogenase (heavy subunit);
oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A
{Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H*
1maf_H*
Length = 373
Score = 25.6 bits (55), Expect = 1.2
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 9 IDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGD 42
I L I+ DG LY A L I D
Sbjct: 314 ISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYD 347
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI
ribose, RV1700, hydrolase; HET: APR; 2.00A
{Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB:
1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*
Length = 207
Score = 25.3 bits (56), Expect = 1.6
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 9 IDLKGYCIIIAETPDGKVKL---YGSPADKSDLEI 40
++ G I+A +G + + Y + E+
Sbjct: 40 VEHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWEL 74
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins,
electron transfer complex, TTQ, electron transport,
oxidoreductase, periplasm, transport, metal- binding;
HET: TRQ; 2.50A {Paracoccus versutus}
Length = 426
Score = 25.4 bits (54), Expect = 1.8
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 9 IDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGD 42
I+L I + D + LY A L I D
Sbjct: 366 IELGHEIDSINVSQDAEPLLYALSAGTQTLHIYD 399
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 2.2
Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 18/47 (38%)
Query: 37 DLEIGD------EILEVNGKTFKDN--CNH----------NEVITHI 65
D E G+ +IL V F DN C E I HI
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI 54
>3na2_A Uncharacterized protein; beta-fold, metagenome, structural
genomics, PSI-2, protein S initiative, midwest center
for structural genomics; 2.29A {Leptospirillum rubarum}
Length = 172
Score = 24.7 bits (53), Expect = 2.5
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 13 GYCIIIAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
G C+ +P G +LYG A K +EI L + + + +C V T + D S
Sbjct: 42 GMCLFSVRSPGGVAELYGGEARK--VEITGTSLTIEREDWHLHCKLETVETVVFDLS 96
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 24.3 bits (53), Expect = 2.9
Identities = 2/24 (8%), Positives = 9/24 (37%)
Query: 2 STSPSHMIDLKGYCIIIAETPDGK 25
+ L G+ + + + + +
Sbjct: 44 DVAALESQPLLGFTVTLVKDENSE 67
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET:
TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Length = 368
Score = 24.7 bits (53), Expect = 3.1
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 9 IDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGD 42
I I DG Y + A L+I D
Sbjct: 310 ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343
>1hbn_C Methyl-coenzyme M reductase I gamma subunit; methanogenesis,
biological methanogenesis, NI-enzyme, oxidoreductase;
HET: MHS AGM MGN F43 TP7; 1.16A
{Methanothermobacterthermautotrophicus} SCOP: d.58.31.1
PDB: 1hbm_C* 1hbo_C* 1hbu_C* 3m1v_C* 3m2r_C* 3m2u_C*
3m2v_C* 3m30_C* 3m32_C* 3pot_C* 1mro_C*
Length = 248
Score = 24.1 bits (52), Expect = 3.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 18 IAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
I + D V L G P D+ L I V+G+ ++D+ E++ IH
Sbjct: 190 IGDELDEPVDL-GEPLDEETLMEKTTIYRVDGEAYRDDVEAVEIMQRIH 237
>1e6v_C Methyl-coenzyme M reductase I gamma subunit; biological
methanogenesis, NI-enzyme, oxidoreductase, NI enzyme;
HET: F43 TP7; 2.70A {Methanopyrus kandleri} SCOP:
d.58.31.1
Length = 258
Score = 24.1 bits (52), Expect = 4.0
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 18 IAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
+ D + + G+PAD+ DL+ I ++G ++++ +V+ IH
Sbjct: 195 VGIELDEPIPV-GAPADEDDLKERTTIYRIDGTPYREDEELLQVVQRIH 242
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone
cofactor, oxidoreductase-electron transport complex;
HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB:
2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D*
3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D*
3svw_D* 3pxw_D* 3sle_D* 1mg2_A* 1mg3_A* 2mta_H* ...
Length = 386
Score = 24.5 bits (52), Expect = 4.1
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 9 IDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGD 42
++ I + D K LY L I D
Sbjct: 327 FEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHD 360
>3kf3_A Invertase; GH32, glycoprotein, glycosidase, hydrolase; HET: FRU
NAG; 1.90A {Schwanniomyces occidentalis} PDB: 3kf5_A*
3u75_A* 3u14_A*
Length = 509
Score = 24.0 bits (52), Expect = 4.9
Identities = 3/19 (15%), Positives = 15/19 (78%)
Query: 14 YCIIIAETPDGKVKLYGSP 32
+ ++++++ + K++++GS
Sbjct: 165 WIMVVSKSQEYKIQIFGSA 183
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 23.7 bits (52), Expect = 5.4
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 34 DKSDLEIGDEILEV---NGKTF 52
D S LE+GD + EV G
Sbjct: 174 DVSILELGDGVFEVKATAGDNH 195
>1e6y_C Methyl-coenzyme M reductase subunit gamma; biological
methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET:
MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP:
d.58.31.1
Length = 247
Score = 23.7 bits (51), Expect = 5.9
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 18 IAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
+A D KV L G P + I V+ F+D+ E + I
Sbjct: 189 VAIPLDRKVDL-GKPMSSEEAAKRTTIYRVDNVAFRDDAEVVEWVHRIF 236
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.135 0.402
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,130,127
Number of extensions: 55362
Number of successful extensions: 291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 209
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.2 bits)