RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16960
(69 letters)
>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3,
RGS3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 39.8 bits (93), Expect = 7e-07
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
G PA+++ L+ D +L++N + + + E+ I
Sbjct: 28 GGPAERAGLQQLDTVLQLNERPVE-HWKCVELAHEIRSC 65
>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 39.4 bits (92), Expect = 2e-06
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
GSPA+K+ L GD ++EVNG+ + H +V++ I
Sbjct: 37 GSPAEKAGLLAGDRLVEVNGENVE-KETHQQVVSRIRAA 74
>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 37.5 bits (87), Expect = 8e-06
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GS A +S L GD ++ ++G H E I
Sbjct: 35 GSKAAQSQLSQGDLVVAIDGVNTD-TMTHLEAQNKI 69
>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor
protein-binding family A member 1 (APBA1, X11) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 37.1 bits (86), Expect = 8e-06
Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
G A++ + +G I+E+NG++ H +++ + +
Sbjct: 30 GGIAERGGVRVGHRIIEINGQSV-VATPHEKIVHILSNAV 68
>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 91
Score = 37.2 bits (86), Expect = 1e-05
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
P D L+ D +L+VN + + + V+ I +
Sbjct: 42 AGPGDLGGLKPYDRLLQVNHVRTR-DFDCCLVVPLIAES 79
>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 36.8 bits (85), Expect = 2e-05
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
PA ++ + +GD++LEVNG + H+E + +
Sbjct: 49 EGPAARAGVRVGDKLLEVNGVALQ-GAEHHEAVEALRGA 86
>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 36.1 bits (83), Expect = 4e-05
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
A+ +DL GD I+ +NG++ +N H E + I +
Sbjct: 40 RGKAEAADLRPGDIIVAINGQSA-ENMLHAEAQSKIRQSA 78
>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C,
EpsC {Vibrio cholerae [TaxId: 666]}
Length = 87
Score = 35.3 bits (81), Expect = 5e-05
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Query: 23 DGKVKLY-------GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
D KV Y + L+ GD + +NG D N + ++
Sbjct: 15 DDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMN 65
>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 104
Score = 35.4 bits (81), Expect = 7e-05
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
G A ++ L +GD ++EVNG+ H +V+ I
Sbjct: 53 GGVAWRAGLRMGDFLIEVNGQNVV-KVGHRQVVNMIRQG 90
>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 33.7 bits (77), Expect = 3e-04
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
SPA K+ L+ GD I+EV+G + + +H + + I
Sbjct: 46 DSPAGKNGTLKPGDRIVEVDGMDLR-DASHEQAVEAIRKAG 85
>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 33.3 bits (76), Expect = 3e-04
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
SPA L GD++L++NG+ + ++ +
Sbjct: 35 NSPASLVGLRFGDQVLQINGENCA-GWSSDKAHKVLKQAF 73
>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 103
Score = 33.9 bits (77), Expect = 3e-04
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
GS A ++L GD IL ++G ++ H + I S
Sbjct: 39 GSKAAAANLCPGDVILAIDGFGT-ESMTHADAQDRIKAAS 77
>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 103
Score = 33.5 bits (76), Expect = 4e-04
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
G A ++ + IGD +L ++G + H E I
Sbjct: 39 GGKASQAHVRIGDVVLSIDGISA-QGMTHLEAQNKIK 74
>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 33.4 bits (76), Expect = 4e-04
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
G A+++ L G ++LE NG + + EV + I S
Sbjct: 59 GGSAEQTGKLMEGMQVLEWNGIPL-TSKTYEEVQSIISQQS 98
>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 32.9 bits (75), Expect = 6e-04
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
PA K L+ GD+I++ NG +F N H + ++ +
Sbjct: 53 EGPASKL-LQPGDKIIQANGYSF-INIEHGQAVSLLKTFQ 90
>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 33.0 bits (75), Expect = 6e-04
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
S A ++ L+ GD++L VN F + H++ + +
Sbjct: 51 DSDAHRAGLQEGDQVLAVNDVDF-QDIEHSKAVEIL 85
>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase
inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 123
Score = 33.0 bits (75), Expect = 7e-04
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 12 KGYCIIIAETPDGKVKLY------GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITH 64
G+ I + L PA + +E GD I+ +N H +V+
Sbjct: 30 MGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVL-GHTHADVVKL 88
Query: 65 I 65
Sbjct: 89 F 89
>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 128
Score = 33.1 bits (75), Expect = 7e-04
Identities = 17/36 (47%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GS A+ S L++GD+ILEVNG++F N H+E + +
Sbjct: 56 GSEAEGSGLKVGDQILEVNGRSFL-NILHDEAVRLL 90
>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 32.6 bits (74), Expect = 8e-04
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GS A+K L +GD+IL VN K+ H E + +
Sbjct: 45 GSLAEKEGLRVGDQILRVNDKSLA-RVTHAEAVKAL 79
>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 88
Score = 32.2 bits (73), Expect = 0.001
Identities = 4/33 (12%), Positives = 11/33 (33%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVI 62
G A + + G + +V+ + +
Sbjct: 26 GGAAANAGVPKGVVVTKVDDRPINSADALVAAV 58
>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 32.2 bits (73), Expect = 0.001
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
G PAD L+ D ++ VNG + + H+ + +
Sbjct: 49 GGPADGL-LQENDRVVMVNGTPME-DVLHSFAVQQLRKS 85
>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 111
Score = 32.3 bits (73), Expect = 0.001
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
A + + GD I+ + G K +EV+ +
Sbjct: 46 HCSASLAGAKEGDYIVSIQGVDCK-WLTVSEVMKLL 80
>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 31.8 bits (72), Expect = 0.001
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
GS + + LEIGD+I+EVNG F N +H E + +
Sbjct: 44 GSLSAEVGLEIGDQIVEVNGVDF-SNLDHKEAVNVL 78
>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase
non-receptor type 4, PTPN4 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 106
Score = 31.8 bits (72), Expect = 0.001
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 13 GYCIIIAETPDGKVKLY------GSPADKSD--LEIGDEILEVNGKTFKDNCNHNEVITH 64
+ + D K+ + G+PAD L GD+++ +NG+ H++V+
Sbjct: 21 RFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIA-EHTHDQVVLF 79
Query: 65 I 65
I
Sbjct: 80 I 80
>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 96
Score = 31.8 bits (72), Expect = 0.002
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G K L+ GD+++ +N ++ + E + I
Sbjct: 44 GGDCYKDGRLKPGDQLVSINKESMI-GVSFEEAKSII 79
>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1,
GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 95
Score = 31.8 bits (72), Expect = 0.002
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 12 KGYCIIIAETPDGKVKLY------GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITH 64
I I+ T + + G A+++ + IGD IL +N + K +E I
Sbjct: 14 GPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLK-GKPLSEAIHL 72
Query: 65 IHDPS 69
+
Sbjct: 73 LQMAG 77
>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein
2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 31.4 bits (71), Expect = 0.002
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
SPA++ L++GD +L +NG + + E +
Sbjct: 48 DSPAERCGLLQVGDRVLSINGIATE-DGTMEEANQLL 83
>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 31.9 bits (72), Expect = 0.002
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
GS A ++ LE GD++LE NG + + + I
Sbjct: 52 GSIAHQAGLEYGDQLLEFNGINLR-SATEQQARLIIGQQC 90
>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase
inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 31.4 bits (71), Expect = 0.002
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 12 KGYCIIIAETPDGKVKLY------GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITH 64
G+ I + + AD+ L GDE++ V+G H VI
Sbjct: 20 SGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVA-GKTHRYVIDL 78
Query: 65 I 65
+
Sbjct: 79 M 79
>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 31.1 bits (70), Expect = 0.003
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A L++G ILEVNG T + H E I
Sbjct: 42 GGSAHNCGQLKVGHVILEVNGLTLR-GKEHREAARII 77
>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase
inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 31.1 bits (70), Expect = 0.003
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 12 KGYCIIIAETPD-GKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHI 65
+G+ IA++P +VK L GD I+E+N + + N +H EV+ +
Sbjct: 21 QGFGFTIADSPTGQRVKQILDIQGCPGLCEGDLIVEINQQNVQ-NLSHTEVVDIL 74
>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 100
Score = 31.0 bits (70), Expect = 0.003
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
G A+KS L GDE+LE+NG + + NEV + D
Sbjct: 51 GGAAEKSGLLHEGDEVLEINGIEIR-GKDVNEVFDLLSDMH 90
>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 94
Score = 30.6 bits (69), Expect = 0.003
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
SPA L++GD IL +NGK N VI I +
Sbjct: 45 DSPAHLCGRLKVGDRILSLNGKDV-RNSTEQAVIDLIKEAD 84
>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 30.3 bits (68), Expect = 0.004
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
S A ++ L I E+NG+ +++ +
Sbjct: 33 DSSAARNGLLTEHNICEINGQNVI-GLKDSQIADILSTS 70
>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor
protein-binding family A member 1 (APBA1, X11) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 30.2 bits (68), Expect = 0.005
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G PA+KS L IGD+I+ +NG + + + I
Sbjct: 36 GGPAEKSGKLNIGDQIMSINGTSLV-GLPLSTCQSII 71
>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal
domains {Escherichia coli [TaxId: 562]}
Length = 88
Score = 29.8 bits (67), Expect = 0.006
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
G+PA + L+ GD I+ N + K+
Sbjct: 35 GTPAAQIGLKKGDVIIGANQQAVKN 59
>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane
exocytosis protein 1, RIMS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 108
Score = 30.3 bits (68), Expect = 0.007
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 19 AETPDGKVKLY------GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
T G++ + GS AD L GDE+LE NGK + EV I
Sbjct: 40 KMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPL-PGATNEEVYNII 92
>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein
Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 126
Score = 30.4 bits (68), Expect = 0.008
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
A L+ GD ++ V E + +
Sbjct: 59 KGAAASDGILQPGDVLISVGHANVL-GYTLREFLKLL 94
>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity
protein par6 (Par-6B) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 98
Score = 29.5 bits (66), Expect = 0.010
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHIHDPS 69
G A+ + L + DE++EVNG ++V + S
Sbjct: 48 GGLAESTGLLAVNDEVIEVNGIEVA-GKTLDQVTDMMVANS 87
>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 29.1 bits (65), Expect = 0.015
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 10 DLKGYCIIIAETPDGKVKLY------GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVI 62
D G I I + K+ + G AD+++ L +GD IL VNG+ + H+E +
Sbjct: 14 DAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDL-SSATHDEAV 72
Query: 63 THIHDPS 69
+
Sbjct: 73 QALKKTG 79
>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 29.2 bits (65), Expect = 0.020
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
S A K + GD I+++NG + N E + +
Sbjct: 58 NSIAAKDGRIREGDRIIQING---IEVQNREEAVALL 91
>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 118
Score = 28.8 bits (64), Expect = 0.025
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 30 GSPADKSD-LEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A++ + GDEI+ +NGK + E +
Sbjct: 53 GGAAERHGGVVKGDEIMAINGKIVT-DYTLAEAEAAL 88
>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L
(RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 127
Score = 27.7 bits (61), Expect = 0.065
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 30 GSPADKS-DLEIGDEILEVNGKTFKDNCNHNEVITHI 65
G A K L + D+++ VNG+T +++E + +
Sbjct: 65 GGAAFKDGRLRMNDQLIAVNGETL-LGKSNHEAMETL 100
>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 100
Score = 26.1 bits (57), Expect = 0.20
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKD 54
GSPA ++ L GD IL + + ++
Sbjct: 41 GSPAHRAGLRPGDVILAIGEQMVQN 65
>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal
processing protease {Algae (Scenedesmus obliquus)
[TaxId: 3088]}
Length = 92
Score = 25.3 bits (55), Expect = 0.45
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 30 GSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIHDP 68
G PA+K+ GD I+ V+G K + +V +
Sbjct: 29 GGPAEKAGARAGDVIVTVDGTAVKG-MSLYDVSDLLQGE 66
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 24.9 bits (53), Expect = 0.84
Identities = 10/41 (24%), Positives = 12/41 (29%)
Query: 2 STSPSHMIDLKGYCIIIAETPDGKVKLYGSPADKSDLEIGD 42
S I I DG Y + A L+I D
Sbjct: 303 VGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343
>d1hbnc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 247
Score = 23.2 bits (50), Expect = 3.1
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 18 IAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
I + D V L G P D+ L I V+G+ ++D+ E++ IH
Sbjct: 190 IGDELDEPVDL-GEPLDEETLMEKTTIYRVDGEAYRDDVEAVEIMQRIH 237
>d1e6vc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 248
Score = 23.2 bits (50), Expect = 3.7
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 18 IAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
+ D + + G+PAD+ DL+ I ++G ++++ +V+ IH
Sbjct: 189 VGIELDEPIPV-GAPADEDDLKERTTIYRIDGTPYREDEELLQVVQRIH 236
>d1e6yc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
{Archaeon Methanosarcina barkeri [TaxId: 2208]}
Length = 247
Score = 22.8 bits (49), Expect = 4.7
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 18 IAETPDGKVKLYGSPADKSDLEIGDEILEVNGKTFKDNCNHNEVITHIH 66
+A D KV L G P + I V+ F+D+ E + I
Sbjct: 189 VAIPLDRKVDL-GKPMSSEEAAKRTTIYRVDNVAFRDDAEVVEWVHRIF 236
>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha
chain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 597
Score = 22.7 bits (47), Expect = 6.3
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 21 TPDGKVKLYGSPAD 34
PDG+ ++ PA
Sbjct: 583 KPDGRAVIWMRPAK 596
>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 21.8 bits (46), Expect = 7.3
Identities = 3/12 (25%), Positives = 7/12 (58%)
Query: 22 PDGKVKLYGSPA 33
P+G +++Y
Sbjct: 16 PEGSIRIYSMRF 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.135 0.402
Gapped
Lambda K H
0.267 0.0594 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 284,091
Number of extensions: 10950
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 54
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)