BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16967
(282 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|125901787|gb|ABN58714.1| pol-like protein [Biomphalaria glabrata]
Length = 1222
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 138/277 (49%), Gaps = 13/277 (4%)
Query: 1 MPLSLRRSKMIMNYVSKIGSCHRNPIHNEFFN-RNYDFANH-PNTPKPLLMRARE----I 54
+P+ +R K+ M Y+ K+ S NP + FN + N PN +PL +R RE +
Sbjct: 841 LPMDIRMKKLAMQYIVKLKSNPTNPAFDSIFNPTEVELYNRRPNVIQPLGLRMREPIQNL 900
Query: 55 TDFIANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHD 114
T I I E P + PPW P ++ SL + KK+N PS+ QV F + Y D
Sbjct: 901 TQPIDQISKIE-TPQN---PPWLMNKPKLNLSLLNFKKENTDPSILQVHFR-ELQESYGD 955
Query: 115 RILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
+TDGSK E +CA + S RL S+F+AEL AILL L +K +KF+
Sbjct: 956 CGTIYTDGSKMEGKVACACSFRNKTISRRLPDGCSIFTAELHAILLALMAVKASERSKFI 1015
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLV-ACGKEISFMWCPSHCGISGNEAVDVA 233
+ +DS S+LQA+ + L+ K LDL+ A ++++F+W PSH GI GNEA D
Sbjct: 1016 ICSDSKSALQALGRMKTDIPLVHKSLKL-LDLITADRRDVTFIWVPSHVGIEGNEAADRE 1074
Query: 234 AKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
AK SD + I R WQ+ W +
Sbjct: 1075 AKRALNHAVSGTQIPYSDLRQSIASATYREWQNRWEA 1111
>gi|443700898|gb|ELT99633.1| hypothetical protein CAPTEDRAFT_212630, partial [Capitella teleta]
Length = 300
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 144/284 (50%), Gaps = 11/284 (3%)
Query: 1 MPLSLRRSKMIMNYVSKIGSCHRNPIHNEFFNRNYD--FANHPNTPKPLLMRAREITDFI 58
MP+++R+ + + + ++ S NP H FN N D + + PN +PL +R +E I
Sbjct: 1 MPMTIRQKLLSVQFALRVCSDTTNPAHQCIFNYNNDRFYLSKPNAIRPLALRIKEDLQTI 60
Query: 59 ANIDSSEFAPYDK-HIPPWSSVVPSIDTSL-HSGKKDNVSPSVFQVQFLVNINTKYHDRI 116
D P +IP W P +D SL H GKK +P+ N+ KY D
Sbjct: 61 CP-DIKAITPNQLFNIPYWLLRPPELDISLIHFGKK-TANPNYTLRNEFYNLMDKYPDHK 118
Query: 117 LCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAI--LLCLQNLKYLPSTKFL 174
+ FTDGSK++++ +C+ T + RL S+FSAEL+AI +L L +FL
Sbjct: 119 VIFTDGSKSDSAVACSATADNLRIQIRLPDSASIFSAELLAIYQVLTLLECSANDQQQFL 178
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAA 234
+ TDS+SSLQAI + + + + KI L G + WCPSH G+ GNE D+ A
Sbjct: 179 IATDSLSSLQAIGNFNIKHPYVFKILQKCTLLHKKGIYLVMAWCPSHVGVMGNERADLLA 238
Query: 235 KNPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
K + SF + +SD+KP+ + + WQ W+S NKL
Sbjct: 239 KE-ALSFTTCTIRVPSSDFKPITHEFYKEKWQEQWSS-EQENKL 280
>gi|443710566|gb|ELU04776.1| hypothetical protein CAPTEDRAFT_186063 [Capitella teleta]
Length = 377
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 143/284 (50%), Gaps = 11/284 (3%)
Query: 1 MPLSLRRSKMIMNYVSKIGSCHRNPIHNEFFNRNYD--FANHPNTPKPLLMRAREITDFI 58
MP+++R+ + + + ++ S NP H FN N D + + PN +PL +R +E I
Sbjct: 70 MPMAIRQKLLSVQFALRVCSDTTNPAHQCIFNYNNDRFYLSKPNAIRPLALRIKEDLQTI 129
Query: 59 ANIDSSEFAPYDK-HIPPWSSVVPSIDTSL-HSGKKDNVSPSVFQVQFLVNINTKYHDRI 116
D P +IP W P +D SL H GKK +P+ N+ KY D
Sbjct: 130 CP-DIKAITPNQLFNIPYWLLRPPELDISLIHFGKK-TANPNYTLKNEFYNLMDKYPDHK 187
Query: 117 LCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAI--LLCLQNLKYLPSTKFL 174
+ FTDGSK++++ +C T + RL S+FSAEL+AI +L L +FL
Sbjct: 188 VIFTDGSKSDSAVACFATADNLSIQIRLPDSASIFSAELLAIYQVLTLLECSANDQQQFL 247
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAA 234
+ TDS+SSLQAI + + + + KI L G + WCPSH G+ GNE D+ A
Sbjct: 248 IATDSLSSLQAIGNFNIKHPYVFKILEKCTLLHKKGIYLVMAWCPSHVGVMGNERADLLA 307
Query: 235 KNPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
K + SF + +SD+KP+ + + WQ W+S NKL
Sbjct: 308 KE-ALSFTTCTIRIPSSDFKPITHEFFKEKWQEQWSS-EQENKL 349
>gi|443693558|gb|ELT94903.1| hypothetical protein CAPTEDRAFT_189741, partial [Capitella teleta]
Length = 502
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 134/250 (53%), Gaps = 14/250 (5%)
Query: 37 FANHPNTPKPLLMRAREITDFIANIDSSEFAPYD-KHIPPWSSVVPSIDTSLHSGKKDNV 95
+ + P+ +PLL R E + ++ ++ AP+ +PPW P +DTS+ KD
Sbjct: 7 YTSKPSFIRPLLYRTEEA---LESVITAPIAPFKISDVPPWKLRPPEVDTSISKFLKDQ- 62
Query: 96 SPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAEL 155
P++F Q N+ KY I +TDGSK+ N+ +CA+T + F L S+++AEL
Sbjct: 63 HPALFLKQEFYNLIDKYPG-INIYTDGSKSNNAVACAFTCSTYQIQFGLPTQMSIYTAEL 121
Query: 156 MAI---LLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
+AI L+ ++ +K +F + +DS+SSL A+++ + L I + +LV GK
Sbjct: 122 IAIEQALIFIETVK--DEDQFNICSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKL 179
Query: 213 ISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSWNSV 271
+ F+WCPSH GI GNE D AK + P KL +DYK I+ V+ WQ+ W+
Sbjct: 180 VVFIWCPSHVGILGNEVADRLAKQ-ALVMPVTKLPLPHTDYKSPIRSYVKSLWQNEWDE- 237
Query: 272 PNGNKLKTYR 281
NKL + +
Sbjct: 238 ETDNKLHSIQ 247
>gi|443734745|gb|ELU18611.1| hypothetical protein CAPTEDRAFT_216906 [Capitella teleta]
Length = 252
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 122/242 (50%), Gaps = 8/242 (3%)
Query: 1 MPLSLRRSKMIMNYVSKIGSCHRNPIHNEFFNRNYD--FANHPNTPKPLLMRAREITDFI 58
MP+++R+ + + + + S NP H FN N D + + PN +PL +R +E I
Sbjct: 1 MPMAIRQKLLSVQFALRGCSDTTNPAHQCIFNYNNDRFYLSKPNAIRPLALRIKEDLQTI 60
Query: 59 ANIDSSEFAPYDK-HIPPWSSVVPSIDTSL-HSGKKDNVSPSVFQVQFLVNINTKYHDRI 116
D P +IP W P +D SL H GKK +P+ N+ KY D
Sbjct: 61 CP-DIKAITPNQLFNIPYWLLRPPELDISLIHFGKK-TANPNYTLRNEFYNLMDKYPDHK 118
Query: 117 LCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAI--LLCLQNLKYLPSTKFL 174
+ FTDGSK++++ +C+ T + RL S+FSAEL+AI +L L +FL
Sbjct: 119 VIFTDGSKSDSAVACSATADNLRIQIRLPDSASIFSAELLAIYQVLTLLECSANDQQQFL 178
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAA 234
+ TDS+SSLQAI + + + + KI L G + WCPSH G+ GNE D+ A
Sbjct: 179 IATDSLSSLQAIGNFNIKHPYVFKILEKCTLLHKKGIYLVMAWCPSHVGVMGNERADLLA 238
Query: 235 KN 236
K
Sbjct: 239 KE 240
>gi|443723447|gb|ELU11866.1| hypothetical protein CAPTEDRAFT_187673 [Capitella teleta]
Length = 225
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 119/229 (51%), Gaps = 13/229 (5%)
Query: 39 NHPNTPKPLLMRAREITDFIANIDSSEFAPYDKH----IPPWSSVVPSIDTSLHSGKKDN 94
N P+ +P R I D I + S P H IPPW V P +D SL S KKD+
Sbjct: 2 NKPSYIQPFPYR---IEDHINTVGS---GPVTHHVIPDIPPWHLVQPEVDLSLTSFKKDS 55
Query: 95 VSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAE 154
S + +F ++ +Y D L +TDGSK+E+S +C++ N+ +L V SVF++E
Sbjct: 56 KSALTIRSEFEDALD-RYPDSTLFYTDGSKSEDSVACSFFSNRLRLKMKLPVQMSVFTSE 114
Query: 155 LMAILLCLQNLKYL-PSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
L+AIL L+ ++ +F++ +D++S++ AI + + K+ + K +
Sbjct: 115 LIAILSALKCVEVDNEQHQFVICSDALSAIMAIHGMDVRHPYVLKVLYAIKSIYQQEKIV 174
Query: 214 SFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKL-CSASDYKPLIKKIVQ 261
FMWCP H GI GNE D AK S +L ASD + LIKK ++
Sbjct: 175 VFMWCPPHVGIPGNEMADTLAKEALSSTNLAELTVRASDLRCLIKKYIR 223
>gi|443713753|gb|ELU06453.1| hypothetical protein CAPTEDRAFT_215116 [Capitella teleta]
Length = 266
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 127/247 (51%), Gaps = 14/247 (5%)
Query: 39 NHPNTPKPLLMRAREITDFIANIDSSEFAPYDKHI----PPWSSVVPSIDTSLHSGKKDN 94
N P+ +P R I D + + SS P H+ PPW V P +D SL KKD+
Sbjct: 2 NKPSFIQPFPYR---IEDHMDTVGSS---PVTHHVIPETPPWHLVQPEVDLSLTFSKKDS 55
Query: 95 VSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAE 154
+S + +F +++ Y + +TDGSK+E+S + ++ ++ +L V SVF++E
Sbjct: 56 MSALTIRSEFEDALDS-YPVSTVFYTDGSKSEDSVARSFFSSRLKLKMKLPVQMSVFTSE 114
Query: 155 LMAILLCLQNLKYL-PSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
++AIL L+ L+ +F++ +DS+S++ AI ++ + ++ + K +
Sbjct: 115 IIAILSALKCLEADNEQHQFVICSDSLSAIMAIHGMDVHHPYVLQVLYAIKSISQQEKIV 174
Query: 214 SFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSWNSVP 272
FMWCPSH GI GNE A+ S +L ASD + LIKK ++ WQ W
Sbjct: 175 VFMWCPSHVGIPGNEMAHTLAEKALSSTNLAELPVPASDLRGLIKKYIRSQWQHEWEEQH 234
Query: 273 NGNKLKT 279
N NKL +
Sbjct: 235 N-NKLHS 240
>gi|443695973|gb|ELT96755.1| hypothetical protein CAPTEDRAFT_23017, partial [Capitella teleta]
Length = 261
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 112/205 (54%), Gaps = 10/205 (4%)
Query: 81 PSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVN 140
P +DTS+ KD P++F Q N+ KY I +TDGSK+ ++ +CA+T +
Sbjct: 3 PEVDTSISKFLKDQ-HPALFLKQEFYNLIDKY-PGINIYTDGSKSNDAVACAFTCSTYQI 60
Query: 141 SFRLNVVNSVFSAELMAI---LLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLS 197
F L S+++AEL+AI L+ ++ +K +F + +DS+SSL A+++ + L
Sbjct: 61 QFGLPAQMSIYTAELIAIEQALIFIETVK--DEDQFNICSDSLSSLTALSNCDITHPYLL 118
Query: 198 KIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKL-CSASDYKPLI 256
I + +LV GK + F+WCPSH GI GNE D AK + P KL +DYK I
Sbjct: 119 SILTKQNNLVRKGKLVVFIWCPSHVGILGNEVADRLAKQ-ALVMPVTKLPLPHTDYKSPI 177
Query: 257 KKIVQRNWQSSWNSVPNGNKLKTYR 281
+ V+ WQ+ W+ NKL + +
Sbjct: 178 RSYVKSLWQNEWDE-ETDNKLHSIQ 201
>gi|427791321|gb|JAA61112.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1210
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 134/289 (46%), Gaps = 26/289 (8%)
Query: 2 PLSLRRSKMIMNYVSKIGSCHRNPIHNEFFNR---NYDFANHPNTPKPLLMRAREI-TDF 57
PLS RR+ + ++YV +I S ++ I + R + N N KPLL+R E +
Sbjct: 821 PLSHRRASLTLSYVLRIRSSPQH-ICYDIATRCSSRLHYLNKSNLIKPLLLRFEEYCRTY 879
Query: 58 IANIDSSEFAPYDKHIPPWSSVVPSIDTSL-HSGKKDNVSPSVFQVQFLVNINTKYHDRI 116
+ + ++ + A IPPW + D SL H KK V+P +Q + KY D
Sbjct: 880 VISEETLDVARKPPRIPPWFDLAQLCDISLSHINKK--VTPPELIIQEFRALQEKYRDYA 937
Query: 117 LCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+TDGSKT + ++ S R+ S+F+AE+ A+ + + K ++
Sbjct: 938 EFYTDGSKTRDHVGIGIVTGESAFSVRVPQCISIFTAEVYALYEAARKIIAGKHKKAIIY 997
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI---SFMWCPSHCGISGNEAVD-- 231
TDS+S+L+A+ KS L+ I L++V ++ F W PSH GI GNE D
Sbjct: 998 TDSLSALKALHIKSECEPLVGDI----LNMVLINSKVISMRFCWVPSHVGIPGNEKADKC 1053
Query: 232 ---VAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
A K + PLK D + I+ + WQ W+S NKL
Sbjct: 1054 ASLAAHKTLTKIRIPLK-----DSQRTIRLALLAKWQQQWDSC-TSNKL 1096
>gi|427791807|gb|JAA61355.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1212
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 134/289 (46%), Gaps = 26/289 (8%)
Query: 2 PLSLRRSKMIMNYVSKIGSCHRNPIHNEFFNR---NYDFANHPNTPKPLLMRAREI-TDF 57
PLS RR+ + ++YV +I S ++ I + R + N N KPLL+R E +
Sbjct: 824 PLSHRRASLTLSYVLRIRSSPQH-ICYDIATRCSSRLHYLNKSNLIKPLLLRFEEYCRTY 882
Query: 58 IANIDSSEFAPYDKHIPPWSSVVPSIDTSL-HSGKKDNVSPSVFQVQFLVNINTKYHDRI 116
+ + ++ + A IPPW + D SL H KK V+P +Q + KY D
Sbjct: 883 VISEETLDVARKPPRIPPWFDLAQLCDISLSHINKK--VTPPELIIQEFRALQEKYRDYA 940
Query: 117 LCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+TDGSKT + ++ S R+ S+F+AE+ A+ + + K ++
Sbjct: 941 EFYTDGSKTRDHVGIGIVTGESAFSVRVPQCISIFTAEVYALYEAARKIIAGKHKKAIIY 1000
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI---SFMWCPSHCGISGNEAVD-- 231
TDS+S+L+A+ KS L+ I L++V ++ F W PSH GI GNE D
Sbjct: 1001 TDSLSALKALHIKSECEPLVGDI----LNMVLINSKVISMRFCWVPSHVGIPGNEKADKC 1056
Query: 232 ---VAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
A K + PLK D + I+ + WQ W+S NKL
Sbjct: 1057 ASLAAHKTLTKIRIPLK-----DSQRTIRLALLAKWQQQWDSC-TSNKL 1099
>gi|443721618|gb|ELU10867.1| hypothetical protein CAPTEDRAFT_200496, partial [Capitella teleta]
Length = 471
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 95/171 (55%), Gaps = 3/171 (1%)
Query: 111 KYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYL-P 169
+Y D + +TDGSK+E+S +C++ ++ +L V SVF++E++AIL L+ ++
Sbjct: 16 RYPDSTVFYTDGSKSEDSVACSFFSSRLKLKMKLPVQMSVFTSEIIAILSALRCVEADNE 75
Query: 170 STKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEA 229
+F++ +DS+S++ AI + + ++ + K + FMWCPSH GI GNE
Sbjct: 76 QHQFVICSDSLSAIMAIHGMDVRHPYVLQVLYAIKSISQQEKIVVFMWCPSHVGIPGNEM 135
Query: 230 VDVAAKNPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKT 279
D AK S +L ASD + LIKK ++ WQ W+ + NKL +
Sbjct: 136 ADTLAKEALSSTNLAELPVPASDLRCLIKKYIRSRWQHEWDE-QHSNKLHS 185
>gi|443712830|gb|ELU05953.1| hypothetical protein CAPTEDRAFT_202466 [Capitella teleta]
Length = 397
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 93/163 (57%), Gaps = 8/163 (4%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAI---LLCLQNLKYLPSTKFLL 175
+TDGSK+ ++ +CA+T + F L S+++AEL+AI L+ ++ +K +F +
Sbjct: 134 YTDGSKSNDTVACAFTCSTYQIQFGLPAQMSIYTAELIAIEQALIFIETVK--DEDQFNI 191
Query: 176 VTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK 235
+DS+SSL A+++ + L I + +LV GK++ F+WCPSH GI GNE D AK
Sbjct: 192 CSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKKVVFIWCPSHVGILGNEVADRQAK 251
Query: 236 NPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
+ P KL +DYK I+ V+ WQ+ W+ NKL
Sbjct: 252 Q-ALVMPVTKLPLPHTDYKSPIRSYVKSLWQNEWDG-ETDNKL 292
>gi|443682433|gb|ELT87030.1| hypothetical protein CAPTEDRAFT_222606 [Capitella teleta]
Length = 619
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 83/157 (52%), Gaps = 1/157 (0%)
Query: 121 DGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSM 180
DGSK+E++ CA+ + L SV++AEL+AI L ++ LP +F++ TDS
Sbjct: 2 DGSKSEDAVGCAFHSRDFNLALGLPCQMSVYTAELIAINETLTSIALLPYDEFVICTDSF 61
Query: 181 SSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPS 240
SS+ AI+S ++ + I +L K I F+WCPSH GI GNE D A+ S
Sbjct: 62 SSILAISSIDLIHSYVQSILQKCTNLAGRDKRIIFIWCPSHVGIPGNETADTLAQQASGM 121
Query: 241 FPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
+D+KP+ + V+ WQS + GNKL
Sbjct: 122 NILNCPIPHTDFKPITRSFVETQWQSESDQ-ETGNKL 157
>gi|328697366|ref|XP_003240318.1| PREDICTED: hypothetical protein LOC100575042 [Acyrthosiphon pisum]
Length = 891
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 5/164 (3%)
Query: 121 DGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSM 180
D SK+E+ A + + +L + S+FSAE AI ++ L + LL++DS+
Sbjct: 155 DASKSEHGVGFAVVKDDTIIQHKLPEITSIFSAENYAIFEGVKLANTLETNDILLISDSL 214
Query: 181 SSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPS 240
S+L A + S N + S I + LV K I FMW PSH GI GNE D A+ + +
Sbjct: 215 STLLAFKNTSPRNEITSNIQAC---LVQSKKNIVFMWVPSHTGIIGNEKADKHAEQATQT 271
Query: 241 F--PPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTYRK 282
P + S+ D K I + + +WQ+ WNS+ NKLK +K
Sbjct: 272 ILNPTINNISSIDIKNSINQKILSSWQNYWNSITLSNKLKNIKK 315
>gi|427778603|gb|JAA54753.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 1397
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 111/238 (46%), Gaps = 24/238 (10%)
Query: 41 PNTPKPLLMRAREITDFIANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVF 100
P +P++ + + + + ID E IPPW D S KK ++
Sbjct: 1042 PLAIRPVVEKLKIHFEDLQEIDQVEV------IPPWKQCPIICDWSFKDLKKKTAPNALI 1095
Query: 101 QVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILL 160
Q FL + KY F+DGSK++ S SCA ++ L+ S+F+AE ILL
Sbjct: 1096 QQHFLA-LEHKYRSAAF-FSDGSKSQTSVSCAAYGESFSDAKTLHAHTSIFTAEAYGILL 1153
Query: 161 CLQNLKYLPSTKFLLVTDSMSSLQAITSKSCN-----NALLSKIYSTW---LDLVACGKE 212
++++K + ++ TDS+S + A++ C+ N LL+ ++ + L +V C
Sbjct: 1154 IVEHIKQHMIRRSIIYTDSLSVVTALSCGKCSKNPVFNKLLNNMHEAYNQNLSIVLC--- 1210
Query: 213 ISFMWCPSHCGISGNEAVDVAAKNPSPSFP-PLKLCSASDYKPLIKKIVQRNWQSSWN 269
W P H GI+GNE VD A+ + + D P++++ ++ +WQ W+
Sbjct: 1211 ----WVPGHAGITGNEMVDKNAREAASRHTIDISSVPGVDLNPVVRRGLRSHWQVEWD 1264
>gi|427791063|gb|JAA60983.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1035
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 129/276 (46%), Gaps = 14/276 (5%)
Query: 3 LSLRRSKMIMNYVSKIGSCHRNPIHNEF--FNRNYDFANHPNTPKPLLMRAREITDFIA- 59
L L+RS M Y K+ + +P H+ + + + N P+ +P +R R++ + +
Sbjct: 683 LHLQRSYMSFVYFLKVKAEKEHPAHSTVNDLSSSVLYHNRPSVRQPYSLRVRDLAEEMGL 742
Query: 60 NIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCF 119
++ ++PPW + D S K +P + + + KY F
Sbjct: 743 SLHEHSLMARAAYLPPWQWQLIECDVSFEQVTKH--APHAHIYTYFLELQHKYTFPEF-F 799
Query: 120 TDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDS 179
TD SK +S S A ++ L+ S+F+AE AI + +++++ L ++ TDS
Sbjct: 800 TDASKFNSSVSYAAVGPSFSDAGVLHQNTSIFTAEAYAIFVAVKHIEQLKLPSAVIYTDS 859
Query: 180 MSSLQAI-TSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAA---- 234
+S ++A+ T K N +L+ +YS + A + + W P H I GN D A
Sbjct: 860 LSVVKALKTLKKHKNPVLASLYSLLCTVYALKQHVVVCWVPGHREIQGNVLADQLAASAH 919
Query: 235 KNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
+N + +F + A D KPL+K+ ++ WQS W++
Sbjct: 920 ENAAHTFLAI---PALDLKPLLKRKLRAYWQSIWDT 952
>gi|443720278|gb|ELU10076.1| hypothetical protein CAPTEDRAFT_219461 [Capitella teleta]
Length = 498
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 33/185 (17%)
Query: 99 VFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAI 158
+ +FL N+ +Y + + +TDGSK+E++ S V++AEL+AI
Sbjct: 84 ALRTEFL-NLLDRYPNSYIFYTDGSKSEDAMS-------------------VYTAELIAI 123
Query: 159 LLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWC 218
L ++ LP +F++ TD +SS+ AI+S + + I L K I F+WC
Sbjct: 124 NETLTSIALLPYDEFVICTDFLSSILAISSIDLIHPYVQSILQKCTCLAGRDKRIIFIWC 183
Query: 219 PSHCGISGNEAVDVAAKNPSPSFPPLKL------CSASDYKPLIKKIVQRNWQSSWNSVP 272
PSH GI GNE D AK L + +D+KP+ V+ WQS W+
Sbjct: 184 PSHVGIPGNETADTVAKQ------ALGMNILNCHIPHTDFKPITCSFVKTQWQSEWDQE- 236
Query: 273 NGNKL 277
GNKL
Sbjct: 237 TGNKL 241
>gi|443724607|gb|ELU12531.1| hypothetical protein CAPTEDRAFT_208903 [Capitella teleta]
Length = 397
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 92/165 (55%), Gaps = 8/165 (4%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAI---LLCLQNLKYLPSTKFLL 175
+TDGSK+ ++ +CA+T + F L S+++AEL+AI L+ ++ +K +F +
Sbjct: 134 YTDGSKSNDAVACAFTCSTYQIQFGLPAQMSIYTAELIAIEQALIFIETMK--DEDQFNI 191
Query: 176 VTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK 235
+DS+SSL A+++ + L I + +LV GK + F+WCPSH GI GNE D AK
Sbjct: 192 CSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKLVVFIWCPSHVGILGNEVADRLAK 251
Query: 236 NPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKT 279
+ P KL +DYK I+ V+ Q+ W+ NKL T
Sbjct: 252 Q-ALVMPVTKLPLPHTDYKSPIRSYVKSLRQNEWDE-ETDNKLHT 294
>gi|443727119|gb|ELU14007.1| hypothetical protein CAPTEDRAFT_217934 [Capitella teleta]
Length = 664
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 33/229 (14%)
Query: 44 PKPLLMRAREITDFIANID----SSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSV 99
P+P R + DFIA D ++E Y +H P S ID SL SPS
Sbjct: 146 PRP---SGRVVEDFIAGNDLSILNTESQTY-RH--PASGSFTVIDLSL-------CSPSA 192
Query: 100 FQVQFLVNINTKYH----------DRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNS 149
+ F ++T H + + FTDGSK++++ +C+ T + RL S
Sbjct: 193 -HIDFTWEVDTDQHGSDHFPIFITNHKVIFTDGSKSDSAVACSATADNLRIQIRLPDSAS 251
Query: 150 VFSAELMAI--LLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLV 207
+FSAEL+AI +L L +FL+ TDS+SSLQAI + + + + KI L
Sbjct: 252 IFSAELLAIYQVLTLLECSTNDQQQFLIATDSLSSLQAIGNFNIKHPYVFKILEKCTLLH 311
Query: 208 ACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLI 256
G ++ WCPSH G+ GNE D+ AK + SF + C ++ PL+
Sbjct: 312 KKGIDLVMAWCPSHVGVMGNERADLLAKE-ALSFTTYQFC--HEHLPLV 357
>gi|443708866|gb|ELU03797.1| hypothetical protein CAPTEDRAFT_187709 [Capitella teleta]
Length = 213
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 99/199 (49%), Gaps = 22/199 (11%)
Query: 1 MPLSLRRSKMIMNYVSKIGSCHRNPIHNEFFNRNYD--FANHPNTPKPLLMRAREITDFI 58
MP+++R+ + + + ++ S NP H FN N D + + PN +PL +R +E
Sbjct: 1 MPMAIRQKLLSVQFALRVCSDTTNPAHQCIFNYNNDRFYLSKPNAIRPLALRIKE----- 55
Query: 59 ANIDSSEFAPYDKHIPP--------WSSVVPSIDTSL-HSGKKDNVSPSVFQVQFLVNIN 109
D P K I P W P +D SL H GKK + +F N+
Sbjct: 56 ---DLQTICPDIKAITPNHLFNTPYWLLRPPELDISLIHFGKKTTNPNYTLKNEF-YNLM 111
Query: 110 TKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAI--LLCLQNLKY 167
KY D + FTDGSK++++ +C+ T + RL S+FSAEL+AI +L L
Sbjct: 112 DKYPDHKVIFTDGSKSDSAVACSATADNLRIQIRLPDSASIFSAELLAIYQVLTLLECSA 171
Query: 168 LPSTKFLLVTDSMSSLQAI 186
+FL+ TDS+SSLQAI
Sbjct: 172 NDQQQFLIATDSLSSLQAI 190
>gi|427781803|gb|JAA56353.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 11/206 (5%)
Query: 74 PPWSSVVPSIDTSLHSGKK--DNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSC 131
PPW P + ++ +K D SP++ Q+ L+ ++ +Y D + +TDGS T ++
Sbjct: 123 PPWCLYRPQLRLTVPGIRKKADLSSPALKQLTLLM-LHEQYKDHVKLYTDGSTTVGGSAG 181
Query: 132 AYTINKNVNS--FRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS- 188
A S FR + + +AEL A+ L+ + K+ + TDS +LQ + +
Sbjct: 182 AVIFPAKAESIQFRTSHKTTSTAAELAALRSALRRIDREVPLKWSIFTDSKPALQCLRTA 241
Query: 189 --KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPS--FPPL 244
+ + LL +I + L G +I+F W P HCGI+GNE D AAKN + P+
Sbjct: 242 LRRGPQDQLLLEIRQLYHQLTDKGHDITFQWLPGHCGITGNEHADDAAKNAHENGVMEPI 301
Query: 245 KLCSASDYKPLIKKIVQRNWQSSWNS 270
L S SD I + +S WN+
Sbjct: 302 PL-SRSDAAAKINTLAHDVARSMWNT 326
>gi|427798885|gb|JAA64894.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1199
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 126/280 (45%), Gaps = 22/280 (7%)
Query: 3 LSLRRSKMIMNYVSKIGSCHRNPIHNEF--FNRNYDFANHPNTPKPLLMRAREITD--FI 58
L L+RS M Y K+ + +P H+ + + F N P+ P +R R + + +
Sbjct: 849 LQLQRSYMSFLYYLKVNADKEHPSHSTINDLSSSTLFENRPSLRPPYSLRVRGLAEETGL 908
Query: 59 ANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILC 118
+ AP + PPW + D S K +P + + + KY+
Sbjct: 909 PLFEHRLMAP-AAYPPPWQWQLIDCDVSFMEVTKH--APIAHIRTYFLELQHKYNCPAF- 964
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTD 178
+TD SK+ S S A ++ L+ S+F+AE AIL +++++ L K ++ TD
Sbjct: 965 YTDASKSHTSVSYAAVGPSFSDAGVLHPNTSIFTAEAYAILAAVKHIRELKLQKAVIYTD 1024
Query: 179 SMSSLQAI-TSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAA--- 234
S+S ++A+ T K N++L +YS L + + W P H I GN D A
Sbjct: 1025 SLSVVKALKTLKKHKNSILVSLYSLVCTLYTAKQHVVVCWVPGHREIQGNVMADHLAAST 1084
Query: 235 ----KNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
N S + P L D KPL+K+ ++ WQS+W+
Sbjct: 1085 HDCSANTSIAIPAL------DLKPLLKRKLRAYWQSTWDQ 1118
>gi|427779533|gb|JAA55218.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 482
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 11/206 (5%)
Query: 74 PPWSSVVPSIDTSLHSGKK--DNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSC 131
PPW P + ++ +K D SP++ Q+ L+ ++ +Y D + +TDGS T ++
Sbjct: 150 PPWCLYRPQLRLTVPGIRKKADLSSPALKQLTLLM-LHEQYKDHVKLYTDGSTTVGGSAG 208
Query: 132 AYTINKNVNS--FRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS- 188
A S FR + + +AEL A+ L+ + K+ + TDS +LQ + +
Sbjct: 209 AVIFPAKAESIQFRTSHKTTSTAAELAALRSALRRIDREVPLKWSIFTDSKPALQCLRTA 268
Query: 189 --KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPS--FPPL 244
+ + LL +I + L G +I+F W P HCGI+GNE D AAKN + P+
Sbjct: 269 LRRGPQDQLLLEIRQLYHQLTDKGHDITFQWLPGHCGITGNEHADDAAKNAHENGVMEPI 328
Query: 245 KLCSASDYKPLIKKIVQRNWQSSWNS 270
L S SD I + +S WN+
Sbjct: 329 PL-SRSDAAAKINTLAHDVARSMWNT 353
>gi|427798887|gb|JAA64895.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1199
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 125/280 (44%), Gaps = 22/280 (7%)
Query: 3 LSLRRSKMIMNYVSKIGSCHRNPIHNEF--FNRNYDFANHPNTPKPLLMRAREITD--FI 58
L L+RS M Y K+ + +P H+ + + F N P+ P +R R + + +
Sbjct: 849 LHLQRSYMSFLYYLKVNADKEHPSHSTINDLSSSTLFENRPSLRPPYSLRVRGLAEETGL 908
Query: 59 ANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILC 118
+ AP + PPW + D S K +P + + + KY+
Sbjct: 909 PLFEHRLMAP-AAYPPPWQWQLIDCDVSFMEVTKH--APIAHIRTYFLELQHKYNCPAF- 964
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTD 178
+TD SK+ S S A + L+ S+F+AE AIL +++++ L K ++ TD
Sbjct: 965 YTDASKSHTSVSYAAVGPSFSAAGALHPNTSIFTAEAYAILAAVKHIRELKLQKAVIYTD 1024
Query: 179 SMSSLQAI-TSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAA--- 234
S+S ++A+ T K N++L +YS + + + W P H I GN D A
Sbjct: 1025 SLSVVKALKTLKKHKNSILVSLYSLVCTVYTAKQHVVVCWVPGHREIQGNVMADHLAAST 1084
Query: 235 ----KNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
N S + P L D KPL+K+ ++ WQS+W+
Sbjct: 1085 HDCSANTSIAIPAL------DLKPLLKRKLRAYWQSTWDQ 1118
>gi|427792011|gb|JAA61457.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1121
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 121/282 (42%), Gaps = 9/282 (3%)
Query: 2 PLSLRRSKMIMNYVSKIGSCHRNPIHNEFFNRN--YDFANHPNTPKPLLMRAREITDFIA 59
P+ L R + Y K+ S +P + + F P+ KP + T A
Sbjct: 842 PMQLEREYCTLMYTLKVTSIPTHPCAKLVADTSALRFFEKRPSLSKPFSLTC-TATAAQA 900
Query: 60 NIDSSEFA--PYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRIL 117
I + A P + +PPW D S K + Q FL ++ KY
Sbjct: 901 EIPLQQVAKAPSMEWLPPWEKTRIKCDMSFCHIDKQRHPRAAIQQHFL-SLQYKYRGCHQ 959
Query: 118 CFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVT 177
+TD SKT +S S A + S RLNV S+F+AE AIL+ ++ + TK ++ T
Sbjct: 960 FYTDASKTRDSVSAAAVGPEFTTSERLNVHTSIFTAEAYAILIAIKYILNHNITKSVIFT 1019
Query: 178 DSMSSLQAI-TSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE-AVDVAAK 235
DS+S ++A+ T K N +L + + EI+ W P H GI GNE A AA
Sbjct: 1020 DSLSVVRALHTGKPNKNPVLCDVEKQLTNAYRNTSEITVCWVPGHAGIDGNERADACAAV 1079
Query: 236 NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
S + D K L+ + ++ WQ W+ N NKL
Sbjct: 1080 AAQKSNLDVNSVPYQDLKALVHRNLRERWQKEWDLETN-NKL 1120
>gi|328697220|ref|XP_001949504.2| PREDICTED: hypothetical protein LOC100162931 [Acyrthosiphon pisum]
Length = 1915
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 6/214 (2%)
Query: 62 DSSEFAPYDKHI-PPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFT 120
D PY+K + PPW + +I+ LH K++ P +F+ F +I + H + +T
Sbjct: 901 DLENIIPYEKPLCPPWQFSM-NINIDLHQFPKNSTCPHIFKNAFR-DICSHTHPQTHIYT 958
Query: 121 DGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDS 179
D S E A ++ ++L+ S+++AE +AIL ++ + + + + +DS
Sbjct: 959 DASIIEGRVGMAIICDETTIQWKLSDKCSIYTAETLAILKAIEFTISEINDSNITIFSDS 1018
Query: 180 MSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK--NP 237
+S+L ++ + + ++ KI +T K I++ W P HC I GNE D AAK +
Sbjct: 1019 LSALTSLQNLYSPSDIVRKIQNTHYIPKQQDKNITYSWVPGHCNIDGNELADSAAKLAHS 1078
Query: 238 SPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSV 271
SP+ L + S +D K +I+K + Q WN +
Sbjct: 1079 SPNSLSLPIFSFNDIKRVIEKDTLLHCQKEWNEM 1112
>gi|427798889|gb|JAA64896.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1199
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 124/279 (44%), Gaps = 22/279 (7%)
Query: 3 LSLRRSKMIMNYVSKIGSCHRNPIHNEFFNRNYD--FANHPNTPKPLLMRAREITD--FI 58
L L+RS M Y K+ + +P H+ + + F N P+ P +R R++ + +
Sbjct: 849 LHLQRSYMSFLYYIKVNADKEHPSHSTINDLSCSTLFENRPSLKPPYSLRVRDLAEQTGL 908
Query: 59 ANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILC 118
+ AP + PPW + D S K +P + + + KY+
Sbjct: 909 PLFEHRLMAP-AAYPPPWQWQLIDCDVSFMEVTKH--APIAHIRTYFLELQHKYNCPAF- 964
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTD 178
+TD SK+ S S A + L+ S+F+AE AIL +++++ L K ++ TD
Sbjct: 965 YTDASKSHTSVSYAAVGPSFSAAGALHPNTSIFTAEAYAILAAVKHIRELKLQKAVIYTD 1024
Query: 179 SMSSLQAI-TSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAA--- 234
S+S ++A+ T K N +L +YS + + + W P H I GN D A
Sbjct: 1025 SLSVVKALKTLKKHRNPVLVSLYSLLCTIYTSKQHVVVCWVPGHREIQGNVMADQLAVSA 1084
Query: 235 ----KNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWN 269
N S + P L D KP +K+ ++ WQS+W+
Sbjct: 1085 HDSSANTSIAIPAL------DLKPYLKRKIRAYWQSTWD 1117
>gi|427779393|gb|JAA55148.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 424
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 101/187 (54%), Gaps = 10/187 (5%)
Query: 91 KKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTI-NKNVN-SFRLNVVN 148
KK N+S + L ++T Y DRI +TDGS T+ S++ A I +++++ +++L V+
Sbjct: 141 KKKNLSTLALKQAALDCLHTFYADRIHVYTDGSTTQTSSTGATVIPSRHIHLTYKLCHVS 200
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS---KSCNNALLSKIYSTWLD 205
+ +EL A+ + ++K P+ ++ + DS ++LQ ++S + L+ +I +
Sbjct: 201 TSTGSELAALRGAVNHIKEQPANRWAVFCDSKAALQCLSSALRRGSYEQLVWEIREMLHN 260
Query: 206 LVACGKEISFMWCPSHCGISGNEAVDVAAKNPSP-----SFPPLKLCSASDYKPLIKKIV 260
+ G ++ F W PSHCGISGN+ D AA+ S P ++ +A L + +
Sbjct: 261 VTEQGHDVVFQWLPSHCGISGNDLADEAAREAHGETSLVSIPLSRIDAARYLSKLAQNMT 320
Query: 261 QRNWQSS 267
+ W++S
Sbjct: 321 LQMWRTS 327
>gi|427780533|gb|JAA55718.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 380
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 106/206 (51%), Gaps = 16/206 (7%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSC 131
H P +P I KK N+S + L ++T Y DRI +TDGS T+ S++
Sbjct: 128 HQPEVRLSIPGIR------KKKNLSTLALKQAALDCLHTFYADRIHVYTDGSTTQTSSTG 181
Query: 132 AYTI-NKNVN-SFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS- 188
A I +++++ +++L V++ +EL A+ + ++K P+ ++ + DS ++LQ ++S
Sbjct: 182 ATVIPSRHIHLTYKLCHVSTSTGSELAALRGAVNHIKEQPANRWAVFCDSKAALQCLSSA 241
Query: 189 --KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSP-----SF 241
+ L+ +I ++ G ++ F W PSHCGISGN+ D AA+ S
Sbjct: 242 LRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGNDLADEAAREAHGETSLVSI 301
Query: 242 PPLKLCSASDYKPLIKKIVQRNWQSS 267
P ++ +A L + + + W++S
Sbjct: 302 PLSRIDAARYLSKLAQNMTLQMWRTS 327
>gi|427781947|gb|JAA56425.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 106/206 (51%), Gaps = 16/206 (7%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSC 131
H P +P I KK N+S + L ++T Y DRI +TDGS T+ S++
Sbjct: 128 HQPEVRLSIPGIR------KKKNLSTLALKQAALDCLHTFYADRIHVYTDGSTTQTSSTG 181
Query: 132 AYTI-NKNVN-SFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS- 188
A I +++++ +++L V++ +EL A+ + ++K P+ ++ + DS ++LQ ++S
Sbjct: 182 ATVIPSRHIHLTYKLCHVSTSTGSELAALRGAVNHIKEQPANRWAVFCDSKAALQCLSSA 241
Query: 189 --KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSP-----SF 241
+ L+ +I ++ G ++ F W PSHCGISGN+ D AA+ S
Sbjct: 242 LRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGNDLADEAAREAHGETSLVSI 301
Query: 242 PPLKLCSASDYKPLIKKIVQRNWQSS 267
P ++ +A L + + + W++S
Sbjct: 302 PLSRIDAARYLSKLAQNMTLQMWRTS 327
>gi|427783065|gb|JAA56984.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 456
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 8/212 (3%)
Query: 54 ITDFIANIDSSEFAPYDK-HIPPWSSVVPSIDTSLHS-GKKDNVSPSVFQVQFLVNINTK 111
I+ + AN+ S F+P K IPPW + P++ S+ KK +S V + L ++ K
Sbjct: 108 ISSYSANLPSG-FSPAAKPSIPPWCLIRPAVHLSVPGIKKKSELSSPVLKQLSLRLLHEK 166
Query: 112 YHDRILCFTDGSKTENSTSCAYTI-NKNVN-SFRLNVVNSVFSAELMAILLCLQNLKYLP 169
Y D + +TDGS T S+S A I + V SF+ + S +AEL A+ L L
Sbjct: 167 YADHVHIYTDGSTTIRSSSGAVVIPARGVTVSFKTDHPTSSTAAELAALRTALCVLNREQ 226
Query: 170 STKFLLVTDSMSSLQAITSKSCNN---ALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226
++ + TDS ++LQ++ S + L+ +I G + +F W PSHCG+ G
Sbjct: 227 PQRWSIFTDSKAALQSLLSALRHGPYEQLVFEIRHLIHTSSEKGHQATFQWLPSHCGVIG 286
Query: 227 NEAVDVAAKNPSPSFPPLKLCSASDYKPLIKK 258
NE D AA++ PL A+ +I K
Sbjct: 287 NEHADNAARSALEEVIPLSRSDAASMLRIIAK 318
>gi|427798837|gb|JAA64870.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1174
Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 9/205 (4%)
Query: 73 IPPWSSVVPSIDTSLHSGKK--DNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
+PPW P+I ++ +K D SP++ Q+ L+ + KY I +TDGS +NS++
Sbjct: 890 VPPWCLTQPNISLAIPGIRKKADMSSPALKQLALLM-LYEKYQGCIHVYTDGSVLQNSST 948
Query: 131 CAYTINKNVNSFRLNVVNSVFS--AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS 188
+ I + + + S AEL A+ LQ + + K+ + +DS ++LQ++ S
Sbjct: 949 ASVVIPIKATTIKCKTCHLTTSTGAELTALRAALQFISDERAQKWTIFSDSKAALQSLLS 1008
Query: 189 ---KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLK 245
+ + L+ +I L G E++F W PSHCGI GNE D AA++ +
Sbjct: 1009 PLRRGPHEQLVFEIAEETHHLTEKGHELAFQWLPSHCGIIGNERADRAARSAHTENNEIL 1068
Query: 246 L-CSASDYKPLIKKIVQRNWQSSWN 269
+ S +D ++ + ++ S WN
Sbjct: 1069 IPLSRTDAARKLRMLARQRTTSQWN 1093
>gi|427798001|gb|JAA64452.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1259
Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 9/205 (4%)
Query: 73 IPPWSSVVPSIDTSLHSGKK--DNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
+PPW P+I ++ +K D SP++ Q+ L+ + KY I +TDGS +NS++
Sbjct: 929 VPPWCLTQPNISLAIPGIRKKADMSSPALKQLALLM-LYEKYQGCIHVYTDGSVLQNSST 987
Query: 131 CAYTINKNVNSFRLNVVNSVFS--AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS 188
+ I + + + S AEL A+ LQ + + K+ + +DS ++LQ++ S
Sbjct: 988 ASVVIPIKATTIKCKTCHLTTSTGAELTALRAALQFISDERAQKWTIFSDSKAALQSLLS 1047
Query: 189 ---KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLK 245
+ + L+ +I L G E++F W PSHCGI GNE D AA++ +
Sbjct: 1048 PLRRGPHEQLVFEIAEETHHLTEKGHELAFQWLPSHCGIIGNERADRAARSAHTENNEIL 1107
Query: 246 L-CSASDYKPLIKKIVQRNWQSSWN 269
+ S +D ++ + ++ S WN
Sbjct: 1108 IPLSRTDAARKLRMLARQRTTSQWN 1132
>gi|427798201|gb|JAA64552.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1128
Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 9/205 (4%)
Query: 73 IPPWSSVVPSIDTSLHSGKK--DNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
+PPW P+I ++ +K D SP++ Q+ L+ + KY I +TDGS +NS++
Sbjct: 890 VPPWCLTQPNISLAIPGIRKKADMSSPALKQLALLM-LYEKYQGCIHVYTDGSVLQNSST 948
Query: 131 CAYTINKNVNSFRLNVVNSVFS--AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS 188
+ I + + + S AEL A+ LQ + + K+ + +DS ++LQ++ S
Sbjct: 949 ASVVIPIKATTIKCKTCHLTTSTGAELTALRAALQFISDERAQKWTIFSDSKAALQSLLS 1008
Query: 189 ---KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLK 245
+ + L+ +I L G E++F W PSHCGI GNE D AA++ +
Sbjct: 1009 PLRRGPHEQLVFEIAEETHHLTEKGHELAFQWLPSHCGIIGNERADRAARSAHTENNEIL 1068
Query: 246 L-CSASDYKPLIKKIVQRNWQSSWN 269
+ S +D ++ + ++ S WN
Sbjct: 1069 IPLSRTDAARKLRMLARQRTTSQWN 1093
>gi|427782051|gb|JAA56477.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 118/255 (46%), Gaps = 18/255 (7%)
Query: 33 RNY--DFANHPNTPKPLLMRAREITDFIANIDS------SEFAPYDKHI-PPWSSVVPSI 83
R Y +A +P+ L R T F A + + S +AP K + PPW +P +
Sbjct: 73 RTYLRQYARNPSHHLASLAAERPRTPFSATVYAHRASFTSGYAPAVKPVFPPWCLYLPQV 132
Query: 84 DTSLHSGKKDNVSPSVFQVQF-LVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSF 142
++ +K + P+ Q L ++ Y + + +TDGS T +S+ A I +
Sbjct: 133 RLTIPGLQKKSALPAPALKQLSLFFLHETYKNHVHIYTDGSTTVSSSGGAVVIPAREITL 192
Query: 143 RLNV--VNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS---KSCNNALLS 197
RL V + +AEL A+ L+ + +++ + +DS +LQ + S + C+ L
Sbjct: 193 RLKTSHVTTSTAAELTALRCALEYIDSERPSRWAVFSDSKPALQCVRSVLRRGCHEQLTY 252
Query: 198 KIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK--NPSPSFPPLKLCSASDYKPL 255
+I + G E+ F W P HCGISGN + D AA+ + + P+ L S +D
Sbjct: 253 EIVRLHHRVKEKGHEVDFQWIPGHCGISGNVSADNAARTSHEQETTVPIPL-SRTDAASQ 311
Query: 256 IKKIVQRNWQSSWNS 270
++ + + + WN+
Sbjct: 312 LRHLARSLCLAEWNT 326
>gi|427779469|gb|JAA55186.1| Putative tick transposon [Rhipicephalus pulchellus]
gi|427782053|gb|JAA56478.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 118/255 (46%), Gaps = 18/255 (7%)
Query: 33 RNY--DFANHPNTPKPLLMRAREITDFIANIDS------SEFAPYDKHI-PPWSSVVPSI 83
R Y +A +P+ L R T F A + + S +AP K + PPW +P +
Sbjct: 73 RTYLRQYARNPSHHLASLAAERPRTPFSATVYAHRASFTSGYAPAVKPVFPPWCLYLPQV 132
Query: 84 DTSLHSGKKDNVSPSVFQVQF-LVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSF 142
++ +K + P+ Q L ++ Y + + +TDGS T +S+ A I +
Sbjct: 133 RLTIPGLQKKSALPAPALKQLSLFFLHETYKNHVHIYTDGSTTVSSSGGAVVIPAREITL 192
Query: 143 RLNV--VNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS---KSCNNALLS 197
RL V + +AEL A+ L+ + +++ + +DS +LQ + S + C+ L
Sbjct: 193 RLKTSHVTTSTAAELTALRCALEYIDSERPSRWAVFSDSKPALQCVRSVLRRGCHEQLTY 252
Query: 198 KIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK--NPSPSFPPLKLCSASDYKPL 255
+I + G E+ F W P HCGISGN + D AA+ + + P+ L S +D
Sbjct: 253 EIVRLHHRVKEKGHEVDFQWIPGHCGISGNVSADNAARTSHEQETTVPIPL-SRTDAASQ 311
Query: 256 IKKIVQRNWQSSWNS 270
++ + + + WN+
Sbjct: 312 LRHLARSLCLAEWNT 326
>gi|427782519|gb|JAA56711.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 460
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 7/180 (3%)
Query: 64 SEFAPYDK-HIPPWSSVVPSIDTSLHS-GKKDNVSPSVFQVQFLVNINTKYHDRILCFTD 121
+ F P + +PPW PSI+ ++ KK ++S + L+ + KY + +TD
Sbjct: 117 TSFTPATRPSVPPWCLTQPSINLTIPGIRKKADMSSPALKQLALLLLYEKYQGSMHVYTD 176
Query: 122 GSKTENSTSCAYTINKNVNS--FRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDS 179
GS NS++ A I + F+ + + + +AEL A+ + L + + K+ + +DS
Sbjct: 177 GSVMPNSSTAAVVIPMKATTIKFKTSHLTTSTAAELAALRVALDFITDERAQKWAIFSDS 236
Query: 180 MSSLQAITS---KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
++LQ++ S + + L+ +I L+ G +I+F W PSHCGI GNE D AA++
Sbjct: 237 KAALQSLLSPLRRGLHEQLVFEITEETHRLIEKGHQITFQWLPSHCGIIGNERADQAARS 296
>gi|427791527|gb|JAA61215.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1298
Score = 77.4 bits (189), Expect = 6e-12, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 101/187 (54%), Gaps = 10/187 (5%)
Query: 91 KKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTI-NKNVN-SFRLNVVN 148
KK N+S + L ++T Y DRI +TDGS T+ S++ A I +++++ +++L V+
Sbjct: 939 KKKNLSTLALKQAALDCLHTFYADRIHVYTDGSTTQTSSTGATVIPSRHIHLTYKLCHVS 998
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS---KSCNNALLSKIYSTWLD 205
+ +EL A+ + ++K P+ ++ + DS ++LQ ++S + L+ +I +
Sbjct: 999 TSTGSELAALRGAVNHIKEQPANRWAVFCDSKAALQCLSSALRRGSYEQLVWEIREMLHN 1058
Query: 206 LVACGKEISFMWCPSHCGISGNEAVDVAAKNPSP-----SFPPLKLCSASDYKPLIKKIV 260
+ G ++ F W PSHCGISGN+ D AA+ S P ++ +A L + +
Sbjct: 1059 VTEQGHDVVFQWLPSHCGISGNDLADEAAREAHGETSLVSIPLSRIDAARYLSKLAQNMT 1118
Query: 261 QRNWQSS 267
+ W++S
Sbjct: 1119 LQMWRTS 1125
>gi|427779423|gb|JAA55163.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 435
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 109/217 (50%), Gaps = 14/217 (6%)
Query: 64 SEFAPYDK-HIPPWSSVVPSIDTSLHS-GKKDNVSPSVFQVQFLVNINTKYHDRILCFTD 121
+ F P + +PPW PSI+ ++ KK ++S + L+ + KY + +TD
Sbjct: 117 TSFTPATRPSVPPWCLTQPSINLTIPGIRKKADMSSPALKQLALLLLYEKYQGSMHVYTD 176
Query: 122 GSKTENSTSCAYTINKNVNS--FRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDS 179
GS NS++ A I + F+ + + + +AEL A+ + L + + K+ + +DS
Sbjct: 177 GSVMPNSSTAAVVIPMKATTIKFKTSHLTTSTAAELAALRVALDFITDERAQKWAIFSDS 236
Query: 180 MSSLQAITS---KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
++LQ++ S + + L+ +I L+ G +I+F W PSHCGI GNE + AA++
Sbjct: 237 KAALQSLLSPLRRGLHEQLVFEITEETHRLIEKGHQITFQWLPSHCGIIGNERANQAARS 296
Query: 237 P----SPSFPPLKLCSASDYKPLIKKIVQRNWQSSWN 269
S + PL S +D I+ + ++ S WN
Sbjct: 297 AHTESSQTLIPL---SRTDAAWKIRVLARQCTVSQWN 330
>gi|443686560|gb|ELT89792.1| hypothetical protein CAPTEDRAFT_191632 [Capitella teleta]
Length = 257
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 24/206 (11%)
Query: 44 PKPLLMRAREITDFIANIDSSEF-APYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQV 102
P+P R + DFIA D S ++ P S ID SL SPS +
Sbjct: 46 PRP---SGRVVEDFIAGNDLSILNTGSQTYLHPASGSFTVIDLSL-------CSPSA-HI 94
Query: 103 QFLVNINTKYH----------DRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFS 152
F ++T H + + FTDGSK++++ + + T + RL+ S+FS
Sbjct: 95 DFTWEVDTDQHGSDHFPIFISNHKVIFTDGSKSDSAVAFSATADNLRIQIRLSDSASIFS 154
Query: 153 AELMAILLCLQNLKYLP--STKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACG 210
AEL+ I L L+ L +FL+ T+S+SSLQA+ + + + + KI L G
Sbjct: 155 AELLDIYQVLTLLECLANDQQQFLIATNSLSSLQALGNFNIKHPYVFKILEKCTLLHKKG 214
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
++ WCPSH G+ GNE D+ AK
Sbjct: 215 IDLVISWCPSHVGVMGNERADLLAKE 240
>gi|427798325|gb|JAA64614.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 339
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 100/187 (53%), Gaps = 10/187 (5%)
Query: 91 KKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTI-NKNVN-SFRLNVVN 148
KK N+S + L ++T Y DRI +TDGS T+ S++ A I +++++ +++L V+
Sbjct: 141 KKKNLSTLALKQAALDCLHTFYADRIHVYTDGSTTQTSSTGATVIPSRHIHLTYKLCHVS 200
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS---KSCNNALLSKIYSTWLD 205
+ +EL A+ + ++K P+ ++ + DS ++LQ ++S + L+ +I +
Sbjct: 201 TSTGSELAALRGAVNHIKEQPANRWAVFCDSKAALQCLSSALRRGSYEQLVWEIREMLHN 260
Query: 206 LVACGKEISFMWCPSHCGISGNEAVDVAAKNPSP-----SFPPLKLCSASDYKPLIKKIV 260
+ G ++ F W PSHC ISGN+ D AA+ S P ++ +A L + +
Sbjct: 261 VTEQGHDVVFQWLPSHCCISGNDLADEAAREAQGETSLVSIPLSRIDAARYLSKLAQNMT 320
Query: 261 QRNWQSS 267
+ W++S
Sbjct: 321 LQMWRTS 327
>gi|427783061|gb|JAA56982.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 460
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 8/190 (4%)
Query: 54 ITDFIANIDSSEFAPYDKH-IPPWSSVVPSIDTSLHS-GKKDNVSPSVFQVQFLVNINTK 111
I+ + AN+ S F+P K IPPW + P++ S+ KK +S V + L ++ K
Sbjct: 108 ISRYSANLPSG-FSPAAKPPIPPWCLIRPAVHLSVPGIKKKAELSSPVLKQLSLRLMHEK 166
Query: 112 YHDRILCFTDGSKTENSTSCAYTI-NKNVN-SFRLNVVNSVFSAELMAILLCLQNLKYLP 169
Y D + +TDGS T S+S A + + V SF+ + S +AEL A+ L L
Sbjct: 167 YTDHVHIYTDGSTTIRSSSGAVVVPARGVTVSFKTDHPTSSTAAELAALRTALCVLNREQ 226
Query: 170 STKFLLVTDSMSSLQAITSKSCNN---ALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226
++ + TDS ++LQ++ S + L+ +I G +++F W PSHCG+ G
Sbjct: 227 PQRWSIFTDSKAALQSLLSALRHGPYEQLVFEIRHLIHTSSEKGHQVTFQWLPSHCGVIG 286
Query: 227 NEAVDVAAKN 236
NE D AA++
Sbjct: 287 NEHADNAARS 296
>gi|427798839|gb|JAA64871.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1220
Score = 76.6 bits (187), Expect = 1e-11, Method: Composition-based stats.
Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 8/214 (3%)
Query: 64 SEFAPYDK-HIPPWSSVVPSIDTSLHS-GKKDNVSPSVFQVQFLVNINTKYHDRILCFTD 121
+ F P + +PPW PSI+ ++ KK ++S + L+ + KY + +TD
Sbjct: 880 TSFTPATRPSVPPWCLTQPSINLTIPGIRKKADMSSPALKQLALLLLYEKYQGSMHVYTD 939
Query: 122 GSKTENSTSCAYTINKNVNS--FRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDS 179
GS NS++ A I + F+ + + + +AEL A+ + L + + K+ + +DS
Sbjct: 940 GSVMPNSSTAAVVIPMKATTIKFKTSHLTTSTAAELAALRVALDFITDERAQKWAIFSDS 999
Query: 180 MSSLQAITS---KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
++LQ++ S + + L+ +I L+ G +I+F W PSHCGI GNE D AA++
Sbjct: 1000 KAALQSLLSPLRRGLHEQLVFEITEETHRLIEKGHQITFQWLPSHCGIIGNERADQAARS 1059
Query: 237 P-SPSFPPLKLCSASDYKPLIKKIVQRNWQSSWN 269
+ S L S +D ++ + ++ S WN
Sbjct: 1060 AHTESSQILIPLSRTDAAWKLRVLARQCTVSQWN 1093
>gi|427783063|gb|JAA56983.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 460
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 8/190 (4%)
Query: 54 ITDFIANIDSSEFAPYDKH-IPPWSSVVPSIDTSLHS-GKKDNVSPSVFQVQFLVNINTK 111
I+ + AN+ S F+P K IPPW + P++ S+ KK +S V + L ++ K
Sbjct: 108 ISRYSANLPSG-FSPAAKPPIPPWCLIRPAVHLSVPGIKKKAELSSPVLKQLSLRLMHEK 166
Query: 112 YHDRILCFTDGSKTENSTSCAYTI-NKNVN-SFRLNVVNSVFSAELMAILLCLQNLKYLP 169
Y D + +TDGS T S+S A + + V SF+ + S +AEL A+ L L
Sbjct: 167 YTDHVHIYTDGSTTIRSSSGAVVVPARGVTVSFKTDHPTSSTAAELAALRTALCVLNREQ 226
Query: 170 STKFLLVTDSMSSLQAITSKSCNN---ALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226
++ + TDS ++LQ++ S + L+ +I G +++F W PSHCG+ G
Sbjct: 227 PQRWSIFTDSKAALQSLLSALRHGPYEQLVFEIGHLIHTSSEKGHQVTFQWLPSHCGVIG 286
Query: 227 NEAVDVAAKN 236
NE D AA++
Sbjct: 287 NEHADNAARS 296
>gi|443734398|gb|ELU18400.1| hypothetical protein CAPTEDRAFT_213104 [Capitella teleta]
Length = 330
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 76/128 (59%), Gaps = 5/128 (3%)
Query: 111 KYHDRILCFTDGSKTENSTSCAYTI-NKNVN-SFRLNVVNSVFSAELMAILLCLQNLKYL 168
K+ RIL +TDGSK +S +TI N++ S R++ VF+AE AI CL L
Sbjct: 147 KFSHRILAYTDGSKQGSSVGYGFTIPAYNISTSVRISDCTDVFTAEAKAIEACLMLLAQR 206
Query: 169 PSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVA-CGKEISFMWCPSHCGISGN 227
+ +++DS+S L+A+ + S ++ ++S I L++ A ++SF+W PSHCGI GN
Sbjct: 207 QISPVTILSDSLSVLEAMQNTS-SSTVISDIQVA-LNVAANSNVDVSFLWIPSHCGIQGN 264
Query: 228 EAVDVAAK 235
EA D AK
Sbjct: 265 EAADALAK 272
>gi|2735953|gb|AAB94030.1| reverse transcriptase [Aphonopelma sp. WDB-1998]
Length = 743
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 94/193 (48%), Gaps = 9/193 (4%)
Query: 86 SLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVN----- 140
S+H GK + S F V+ + K R +TDGSK+E+ T A+ + +N
Sbjct: 458 SIHPGKWIAIEWSNFGSPSTVSDSDKL-ARHQIYTDGSKSESGTGAAFVVFRNGELWMSR 516
Query: 141 SFRLNVVNSVFSAELMAILLCLQNL--KYLPSTKFLLVTDSMSSLQAITSKSCNNALLSK 198
S+++ N+ AE++AI LQ L + ++TDS SSLQA+ + SC+ L+ +
Sbjct: 517 SYKMTASNTSSQAEILAIWKALQWLLADGVGIKSCAVITDSQSSLQALANPSCDWLLVMR 576
Query: 199 IYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKL-CSASDYKPLIK 257
+ + L+ G + F W H GN+ D AA+ S S +++ S +K +
Sbjct: 577 AKAAYRQLLRNGVAVRFFWTKGHATCEGNKIADSAAREASASGLSIEVPLPHSYFKSVTA 636
Query: 258 KIVQRNWQSSWNS 270
K+ R W+ W +
Sbjct: 637 KMAYRLWEQRWRA 649
>gi|427779397|gb|JAA55150.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 425
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 7/180 (3%)
Query: 64 SEFAPYDK-HIPPWSSVVPSIDTSL-HSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTD 121
+ F P + +PPW PSI+ ++ + KK ++S + L+ + KY + +TD
Sbjct: 117 TSFTPATRPSVPPWCLTQPSINLTIPGTRKKADMSSPALKQLALLLLYEKYQGSMHVYTD 176
Query: 122 GSKTENSTSCAYTINKNVNS--FRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDS 179
GS NS++ A I + F+ + + + +AEL A+ + L + + K+ + +DS
Sbjct: 177 GSVMPNSSTAAVVIPMKATTIKFKTSHLTTSTAAELAALRVALDFITDERAQKWAIFSDS 236
Query: 180 MSSLQAITS---KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
++LQ++ S + + L+ +I L+ G +I+F W SHCGI GNE D AA++
Sbjct: 237 KAALQSLLSPLRRGLHEQLVFEITEETHRLIEKGHQITFQWLTSHCGIIGNERADQAARS 296
>gi|51950578|gb|AAA70222.2| putative ORF2 [Drosophila melanogaster]
Length = 1219
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 11/171 (6%)
Query: 71 KHIPPWSSVVPS-IDTSLHSGKKDNVSPSVFQVQFL-VNINTKYHDRILCFTDGSKTENS 128
K+ PPW+ +P+ IDTSL KK+ SP ++ + N K H+ I FTDGSK +
Sbjct: 906 KNKPPWT--LPNLIDTSLRIHKKEQTSPDQYRKLYEHTKNNLKTHNFI--FTDGSKINYT 961
Query: 129 TSCAYTINKNVNSFR-LNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAIT 187
S A T +V + L +SV ++E +AIL ++ L KF++ +DS+S++ +I
Sbjct: 962 ISFAITTETDVLKYGILPPYSSVLTSETIAILEAIE-LTKNRRGKFIICSDSLSAVDSIQ 1020
Query: 188 SKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
+ + N+ S+I S + +I MW P H GI GNE D AAK+ S
Sbjct: 1021 NTNNNSFYPSRIRSL---ITQHAPKIKIMWIPGHSGIKGNELADQAAKSAS 1068
>gi|427784665|gb|JAA57784.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 10/184 (5%)
Query: 91 KKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNV--VN 148
KK +SP + L IN Y DR+ +TDGS NS++ A + S +L +
Sbjct: 141 KKARLSPLALKQFSLCLINETYFDRVHVYTDGSTNSNSSTGAVVVPSGDISMQLKFSHIT 200
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAIT---SKSCNNALLSKIYSTWLD 205
+ +AEL A+ ++ + P ++ + DS S+LQ + + L+ +I +
Sbjct: 201 TSTAAELGALQAAVKYILRQPPNQWAIFCDSRSALQTLQFALRHGLHEQLVYEIRHDYHQ 260
Query: 206 LVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPS-----FPPLKLCSASDYKPLIKKIV 260
+ G +++F W PSHCGI+GN+ D AA++ P + +A + L +++
Sbjct: 261 ALENGHDVTFQWLPSHCGIAGNDRADEAARSAHEKDLQVPIPLSRTDAARQLQSLARRLT 320
Query: 261 QRNW 264
W
Sbjct: 321 LLQW 324
>gi|443706301|gb|ELU02423.1| hypothetical protein CAPTEDRAFT_206267 [Capitella teleta]
Length = 357
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 94/196 (47%), Gaps = 21/196 (10%)
Query: 54 ITDFIANIDSSEF-APYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKY 112
+ DFIA D S ++ P S ID SL SPS + F ++T
Sbjct: 153 VEDFIAGNDLSILNTGSQTYLHPASGSFTVIDLSL-------CSPSA-HIDFTWEVDTDQ 204
Query: 113 H----------DRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCL 162
H + + FTDGSK++++ + + T + RL+ S+FSAEL+ I L
Sbjct: 205 HGSDHFPIFISNHKVIFTDGSKSDSAVAFSATADNLRIQIRLSDSASIFSAELLDIYQVL 264
Query: 163 QNLKYLP--STKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPS 220
L+ L +FL+ T+S+SSLQA+ + + + + KI L G ++ WCPS
Sbjct: 265 TLLECLANDQQQFLIATNSLSSLQALGNFNIKHPYVFKILEKCTLLHKKGIDLVISWCPS 324
Query: 221 HCGISGNEAVDVAAKN 236
H G+ GNE D+ AK
Sbjct: 325 HVGVMGNERADLLAKE 340
>gi|427784671|gb|JAA57787.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 434
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 7/183 (3%)
Query: 60 NIDSSEFAPYD-KHIPPWSSVVPSIDTSLHS-GKKDNVSPSVFQVQFLVNINTKYHDRIL 117
+I S FAP +P W+ P + S+ GKK + + L I+TKY
Sbjct: 89 SIIPSGFAPAKVAEVPAWTLSRPEVRLSIPGVGKKSRIPSCGLKQLTLSFISTKYASSTH 148
Query: 118 CFTDGSKTENSTSCAYTIN--KNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLL 175
FTDGS +++ A+ I K FRL+ + +AE++AI ++ + P + +
Sbjct: 149 VFTDGSVLPTTSTAAFVIPSLKTSERFRLDHRTTSTAAEIVAIREVIRYISTKPPRSWTI 208
Query: 176 VTDSMSSLQAITS--KSCNNALLSKIYSTWLDL-VACGKEISFMWCPSHCGISGNEAVDV 232
DS +LQ I S + LL++ + D+ + G I + W P HCG+ GNE D
Sbjct: 209 FCDSKPALQIIYSALRRGPYYLLAQEVAESHDVALKSGHRIGYQWIPGHCGLHGNEQADA 268
Query: 233 AAK 235
AK
Sbjct: 269 EAK 271
>gi|427778517|gb|JAA54710.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 468
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 111/223 (49%), Gaps = 16/223 (7%)
Query: 63 SSEFAPYDK-HIPPWSSVVPSIDTSLHSGKKDNVSPS--VFQVQFLVNINTKYHDRILCF 119
++ +AP K +PPW P + ++ ++ + P+ + Q+ L+ + Y + + +
Sbjct: 123 TAAYAPASKPLLPPWCLSRPRVHLTIPGVRRKSDLPTHALKQLSLLLQYD-NYSNHVHIY 181
Query: 120 TDGSKTENSTSCAYTINKNVNSFRLNVVNSVFS--AELMAILLCLQ--NLKYLPSTKFLL 175
TDGS T S+ A I + R ++ S AEL A+ L+ N + PS K+ +
Sbjct: 182 TDGSTTSCSSGGAVVIPSQGITLRFKTSHATTSTAAELAALRSALEFINSEERPS-KWAV 240
Query: 176 VTDSMSSLQAITS---KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDV 232
+DS +LQ + S + C++ L + ++ G +I F W P HCGISGN++ D
Sbjct: 241 FSDSKPALQCLGSVLRRGCHDQLTYETVKLHHHVIQKGHDIDFQWLPGHCGISGNDSADN 300
Query: 233 AAK--NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPN 273
AA+ + + P+ L S +D I+++ + + WN+ PN
Sbjct: 301 AARASHQEANIVPIPL-SRTDAARQIRELARSLTLTEWNA-PN 341
>gi|427781953|gb|JAA56428.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 91/186 (48%), Gaps = 10/186 (5%)
Query: 91 KKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVV--N 148
KK +S + L++++ Y +TDGS T S++ A I + + +L +
Sbjct: 141 KKKRMSSVALKQAALLHLHEVYSAHTHIYTDGSVTATSSTAAVIIPASSVTIQLKMFYST 200
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK---SCNNALLSKIYSTWLD 205
S +AEL+A+ LQ + + + DS ++LQ++ S + L+++I D
Sbjct: 201 STTAAELVALRAALQFVIEQTPNSWAIFCDSKAALQSLPSALRHGSHEQLVAEIRQVHHD 260
Query: 206 LVACGKEISFMWCPSHCGISGNEAVDVAAKNP-----SPSFPPLKLCSASDYKPLIKKIV 260
++ G ++ F W PSHCGI GN+ D AA++ S + P + +A + + L +++
Sbjct: 261 IIEKGHQVIFQWMPSHCGIQGNDQADAAARSAHDGVSSVAIPLSRSDAAKELRVLARRLT 320
Query: 261 QRNWQS 266
W S
Sbjct: 321 LDLWHS 326
>gi|443694523|gb|ELT95634.1| hypothetical protein CAPTEDRAFT_227708 [Capitella teleta]
Length = 364
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 71/138 (51%), Gaps = 19/138 (13%)
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVA 208
SV++AEL+AI L ++ LP +F++ TDS+SS+ AI+S + + I L
Sbjct: 2 SVYTAELIAINETLTSIALLPYDEFVICTDSLSSILAISSIDLIHPYVQSILQKCTCLAG 61
Query: 209 CGKEISFMWCPSHCGISGNEAVDVAAKN---------PSPSFPPLKLCSASDYKPLIKKI 259
K I F+WCPSH GI GNE D AK P P +D+KP+ +
Sbjct: 62 RDKRIIFIWCPSHVGIPGNETADTLAKQALGMNILNCPIPH---------TDFKPITRSF 112
Query: 260 VQRNWQSSWNSVPNGNKL 277
V+ WQS W+ GNKL
Sbjct: 113 VKTQWQSEWDQ-ETGNKL 129
>gi|11323019|emb|CAC16871.1| pol [Drosophila melanogaster]
Length = 1227
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 14/199 (7%)
Query: 76 WSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTI 135
W S P+I+ +++ K + +Q +F+ + + +TDGSK +T+ A
Sbjct: 924 WGSKQPNINLQIYNAAKKDTGRLEYQKRFM-SAQEDLGVKNWIYTDGSKVTGATTFAVVD 982
Query: 136 N--KNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNN 193
+ K + RL NS+F+AE AIL Q + K ++ TDS+SSL AI + + N+
Sbjct: 983 SNRKIIAGGRLPSYNSIFTAEAFAILKACQ-FASKNAGKSVICTDSLSSLSAIRNWNHND 1041
Query: 194 ALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN----PSPSFPPLKLCSA 249
++ L + K+I+ +W PSH GI GNE D AA+ PS F P ++
Sbjct: 1042 PTTQEVRHI---LSSHPKKITLLWVPSHQGIHGNELADKAAQEMRLTPSILFTPF---NS 1095
Query: 250 SDYKPLIKKIVQRNWQSSW 268
D K IK ++ S W
Sbjct: 1096 KDLKSRIKLYLKEKKLSEW 1114
>gi|427781951|gb|JAA56427.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)
Query: 91 KKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVV--N 148
KK +S + L++++ Y +TDGS T S++ A I + + +L +
Sbjct: 141 KKKRMSSVALKQAALLHLHEVYSAHTHIYTDGSVTATSSTAAVIIPASSVTIQLKMFYST 200
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK---SCNNALLSKIYSTWLD 205
S +AEL+A+ LQ + + + DS ++LQ++ S + L+++I D
Sbjct: 201 STTAAELVALRAALQFVIEQTPNSWAIFCDSKAALQSLPSALRHGSHEQLVAEIRQVHHD 260
Query: 206 LVACGKEISFMWCPSHCGISGNEAVDVAAKNP-----SPSFPPLKLCSASDYKPLIKKIV 260
++ G + F W PSHCGI GN+ D AA++ S + P + +A + + L +++
Sbjct: 261 IIEKGHTVIFQWMPSHCGIQGNDQADAAARSAHNGVSSVAIPLSRSDAAKELRVLARRLT 320
Query: 261 QRNWQS 266
W S
Sbjct: 321 LDLWHS 326
>gi|443690773|gb|ELT92824.1| hypothetical protein CAPTEDRAFT_204342 [Capitella teleta]
Length = 294
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 4/171 (2%)
Query: 107 NINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLK 166
N+ +Y + + +TDGSK++ + C + + L+ SV++AEL+AI L ++
Sbjct: 87 NLLGRYPNFYIFYTDGSKSKEAIGCGFHSRDFNLALGLSCQMSVYTAELIAINETLTSIA 146
Query: 167 YLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226
LP +F++ TDS+SS+ AI+S + + I+ L K I F+WCPSH GI
Sbjct: 147 LLPYDEFVICTDSLSSILAISSIDFIHPYVQSIFQKCTCLAGRDKRIIFIWCPSHVGIPE 206
Query: 227 NEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
NE + A + P+ + +KP+ + V+ QS W+ GN+L
Sbjct: 207 NETLAKQALGMNILNCPI---PHTAFKPIARSFVKTQRQSEWDQ-ETGNEL 253
>gi|427797379|gb|JAA64141.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 544
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 74 PPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAY 133
PP VP I KK ++S + + L +++ Y +RI +TDGS + +ST
Sbjct: 221 PPVHLEVPGIY------KKASLSSAALKQISLEHLHISYANRIHVYTDGSVSGSSTGAFV 274
Query: 134 TINKNVN-SFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCN 192
++++ F+ + V + +EL A+L ++ + +K+ + DS ++LQ + S
Sbjct: 275 VPSRSITVKFKTSHVTTSTGSELAALLAAMKFVMQESPSKWAIFCDSKAALQCVRSLRRG 334
Query: 193 N--ALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK----NPSPSFPPLKL 246
N L+S+I G +I F W P HCGISGN D AA+ S PL
Sbjct: 335 NYHQLVSQINEICDRATNQGHDIVFQWLPGHCGISGNHLADNAARCAHNETSTLLIPL-- 392
Query: 247 CSASDYKPLIKKIVQRNWQSSWNSVPN 273
S D +++I + WNS P+
Sbjct: 393 -SRVDAARELRRIAHNATLTHWNSPPH 418
>gi|427783937|gb|JAA57420.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 460
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 96/206 (46%), Gaps = 9/206 (4%)
Query: 73 IPPWSSVVPSIDTSLHS--GKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
+PPW P+I+ ++ K+D +P++ Q+ + ++ KYHD +TDGS +S++
Sbjct: 127 VPPWCLKQPTINLTIPGVQKKQDLSAPALKQLALFL-LDEKYHDSTHVYTDGSVLPSSST 185
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLC--LQNLKYLPSTKFLLVTDSMSSLQAITS 188
A I + +L + S L L + ++ + DS ++LQ++ S
Sbjct: 186 AAVVIPTFARTIKLRKAHPTTSTAAEIAALRAALHFINDQMRKRWTIFCDSKTALQSLLS 245
Query: 189 ---KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLK 245
+ + L+ + L G I+F W PSHCGI GNE D AA++ L
Sbjct: 246 TLRRGPHEQLVFETAEMLHHLTEKGHHITFQWLPSHCGIIGNERADQAARSAHTEDRDLS 305
Query: 246 L-CSASDYKPLIKKIVQRNWQSSWNS 270
+ S +D ++ + ++ S+WN
Sbjct: 306 IPLSRTDAARKLRMLARQYTTSNWNE 331
>gi|427792791|gb|JAA61847.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 650
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 9/217 (4%)
Query: 73 IPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQF-LVNINTKYHDRILCFTDGSKTENSTSC 131
IP W+ P++ S+ K + P+ F L I Y + F DGS T+NS++
Sbjct: 316 IPLWTMPKPTVRLSIPGITKKSRIPTAGLKHFALSYITYMYRYTVHIFADGSVTQNSSAA 375
Query: 132 AYTI--NKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAIT-- 187
A+T+ F++ S +AEL + + + L DS +LQ I
Sbjct: 376 AFTVPDMGVTKRFKITHRTSSTAAELTGVRQAAHFISQQSPATWTLFCDSKPALQLIGNY 435
Query: 188 --SKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLK 245
+ + L+ +I + G I+ W PSHCGI+GNE D AK + +
Sbjct: 436 MKQGTAYSPLVYEIMIMLTEASQSGHTITLQWIPSHCGIAGNEQADAEAKMAHTTGEVVS 495
Query: 246 L-CSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTYR 281
+ S D L+ K ++ + WN P+ + + YR
Sbjct: 496 IHFSRYDINALLSKAIKTSMTRLWND-PDYRQERLYR 531
>gi|358376822|dbj|GAA93326.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 815
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 31/213 (14%)
Query: 92 KDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENS-TSCAYTINKNVNSFRLNVVN-- 148
K ++ P + Q K I F+D S+ +N + A ++ N+ + ++
Sbjct: 484 KVDIKPDREKAQARALARQKSATSITVFSDASEKQNQLGAAAVALDCNLQVLKSRQISIG 543
Query: 149 -----SVFSAELMAIL--------LCLQNLK-----YLPSTKFLLVTDSMSSLQAITSK- 189
SV++AELMAI L +N + + P+T +++DSMS+LQ I +
Sbjct: 544 SMEYWSVYTAELMAIYYAIGLVFQLAQRNQRSAETNHEPAT---ILSDSMSALQVIKNSW 600
Query: 190 -SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP---SPSFPPLK 245
++ I+ + +L A G + W P HCG GNEA D AK+ P
Sbjct: 601 NKSGQCIIQAIHHSAGELKARGIPLRLQWVPGHCGDPGNEAADRLAKDAVGIDKKHPFKH 660
Query: 246 LCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLK 278
L S K I++ + + W+ W + NG L+
Sbjct: 661 LLSRE--KGYIRRKIYQEWEQEWRTSKNGGHLR 691
>gi|90409437|ref|ZP_01217503.1| hypothetical protein PCNPT3_00010, partial [Psychromonas sp. CNPT3]
gi|90309457|gb|EAS37676.1| hypothetical protein PCNPT3_00010 [Psychromonas sp. CNPT3]
Length = 776
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 11/171 (6%)
Query: 73 IPPWSSVVPSIDTSLHSGKK---DNVSPSVFQVQFLVNINTKYH-DRILCF-TDGSKTEN 127
+P S + S D+SL K +++ P V F +N H D++ F TDGS +E
Sbjct: 586 LPECYSSIVSTDSSLREEIKVIPNDLRPRVVPGIF---VNRYGHIDKMNQFYTDGSSSEE 642
Query: 128 STSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAIT 187
T F+L +VF+AEL AI L + P ++ + TDS+S+++A+
Sbjct: 643 GTGFGVFSETTGAFFKLRQPCTVFTAELAAIFYALLLIAASPPDQYFIFTDSLSAIEALK 702
Query: 188 SKSC---NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK 235
+ + + KI L IS +W PSHCGI GNE D AK
Sbjct: 703 TPRAVKSQDFFIVKIIELLGSLFDKAFRISLIWVPSHCGIPGNEKADSLAK 753
>gi|443699889|gb|ELT99143.1| hypothetical protein CAPTEDRAFT_215477 [Capitella teleta]
Length = 347
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 6/137 (4%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPS-TKFLLVT 177
+ +GSK E S N+ + RL S+FSAEL+AI L L+ S + L+VT
Sbjct: 139 YINGSKRETMQS---GFNRLLIQVRLPDSASIFSAELLAIYEVLTLLECAASYEQILIVT 195
Query: 178 DSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP 237
DS+SSLQA+ + + + + KI + L G ++ +WCPSH G+ GN D+ AK
Sbjct: 196 DSLSSLQALGNFNITHPYVFKILEKYTILYNRGFDLVMLWCPSHVGVVGNARADLLAKK- 254
Query: 238 SPSFPPLKL-CSASDYK 253
+ SF + ASD+K
Sbjct: 255 ALSFTACNVRIPASDFK 271
>gi|950316|gb|AAA74495.1| unknown protein [Drosophila teissieri]
Length = 1234
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 102/240 (42%), Gaps = 26/240 (10%)
Query: 3 LSLRRSKMIMNYVSKIGSCHRNPIHNEFFNRNYDFANHPNTPKPLLMRAREITDFIANID 62
L ++R I + C PIH F H K L I D +
Sbjct: 843 LEMKRDLQIAKLSQNLSFCKNRPIH--------KFVRHKKYKKKTL----SIIDQTIKLS 890
Query: 63 SSEFAPYD-----KHIPPWSSVVPS-IDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRI 116
PY K+ P W +P+ IDTSL KK SP ++ + + K
Sbjct: 891 LELNLPYKPIKLHKYKPSWD--LPNLIDTSLRGHKKQETSPESYR-KLFEHTKNKLKPHS 947
Query: 117 LCFTDGSKTENSTSCAYTINKNV-NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLL 175
FTDGSK + A T + N+ L +SV ++E +AIL ++ +K KF +
Sbjct: 948 FIFTDGSKINCIITFAITTDTNILKQGILPPYSSVLTSETIAILEAIELIK-TRRGKFGI 1006
Query: 176 VTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK 235
DS+S++ +I + + N+ ++I S + +I MW P H GI GNE D AAK
Sbjct: 1007 WFDSLSAIDSIKNPNNNSFYPNRIRSL---ITQLAPKIKIMWIPGHSGIIGNELADQAAK 1063
>gi|427778015|gb|JAA54459.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 482
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 13/203 (6%)
Query: 73 IPPWSSVVPSIDTSLHS-GKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSC 131
+PPW + P++ + KK +S V + L+ ++ +Y D + +TDGS +S
Sbjct: 148 MPPWCLIRPTVHLCVPGIRKKSELSSPVLKQLSLLLLHERYADSVHLYTDGSTNLQFSSG 207
Query: 132 AYTINKNV--NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS- 188
A + SFR + + +AEL LCL N + P K+ + +DS ++LQ++ S
Sbjct: 208 AVVVPARAITTSFRTDHPTTSTAAELAXXXLCLVNRE--PPQKWSIFSDSKAALQSVLSA 265
Query: 189 --KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK-----NPSPSF 241
+ L+ +I G ++F W PSHCG+ GNE D AA+ +
Sbjct: 266 LRRGPYEQLVFEIRYLIHTSHEKGHHVTFQWLPSHCGVIGNEHADNAARAALEGTQEDTI 325
Query: 242 PPLKLCSASDYKPLIKKIVQRNW 264
P + +AS + L ++I W
Sbjct: 326 PLSRSDAASSLRGLAQEITLSLW 348
>gi|427782325|gb|JAA56614.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 1173
Score = 68.6 bits (166), Expect = 3e-09, Method: Composition-based stats.
Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 10/227 (4%)
Query: 64 SEFAP-YDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQF-LVNINTKYHDRILCFTD 121
S +AP IP W+ P++ S+ K + P+ F L I Y + F D
Sbjct: 829 SNYAPQVIPEIPLWTMPKPTVRLSIPGITKKSRIPTAGLKHFALSYITYMYRYTVHIFAD 888
Query: 122 GSKTENSTSCAYTINKN--VNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDS 179
GS T+NS++ A+T+ F++ S +AEL + + + L DS
Sbjct: 889 GSVTQNSSAAAFTVPDMGVTKRFKITHRTSSTAAELTGVRQAAHFISQQSPATWTLFCDS 948
Query: 180 MSSLQAI----TSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK 235
+LQ I + + L+ +I + G I+ W PSHCGI+GNE D AK
Sbjct: 949 KPALQLIGNYMKQGTAYSPLVYEIMIMLTEASQSGHTITLQWIPSHCGIAGNEQADAEAK 1008
Query: 236 NPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTYR 281
+ + + S D L+ K ++ + WN P+ + + YR
Sbjct: 1009 MAHTTGEVVSIHFSRYDINALLSKAIKTSMTRLWND-PDYRQERLYR 1054
>gi|2736044|gb|AAB94039.1| reverse transcriptase [Aphonopelma sp. WDB-1998]
Length = 488
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 11/175 (6%)
Query: 111 KYHDR----ILCFTDGSKTENSTSCAYTI---NKNVNS--FRLNVVNSVFSAELMAIL-L 160
++HDR + +TDGSKT + T A+ + + + S F L+ ++ + AE +AIL
Sbjct: 235 EWHDRDDYILQIYTDGSKTSDGTGAAFVVLDRGRQIFSAGFSLSKHHTHYQAEAVAILKA 294
Query: 161 CLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPS 220
+ + K +++DS S+L+A+ + + I T + G++I W
Sbjct: 295 TMWFAEECQGNKVAIISDSQSALKALYRTQEVSPTIRDIKRTITTIKRQGRQIDLYWTKG 354
Query: 221 HCGISGNEAVDVAAKNPSPSFPPLKLCS-ASDYKPLIKKIVQRNWQSSWNSVPNG 274
H G +GNE D AAK S + S K LIKK R W + W G
Sbjct: 355 HAGQAGNEMADRAAKEAVISGQRYVMPRPVSWVKALIKKETLREWATRWAGSDKG 409
>gi|358376676|dbj|GAA93209.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 378
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 116 ILCFTDGSKTENS-TSCAYTINKN---VNSFRLNVVN----SVFSAELMAILLCL----- 162
I F+D S EN + A ++ N V S ++++ + SV++AELMAI +
Sbjct: 50 ITVFSDTSGKENQLGAAAVALDHNQQIVGSQQVSIGSMEFWSVYTAELMAIYYAIRLGFQ 109
Query: 163 -----QNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISF 215
Q + + +++DSMS+LQ I + ++ I+ + +L A G +
Sbjct: 110 LAQKNQRSRATDAEPATILSDSMSALQVIKNSWNKSGQRIIQAIHQSAGELRARGIPLQL 169
Query: 216 MWCPSHCGISGNEAVDVAAK---NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVP 272
W P HCG GNEA D AK P L S K I+K + W W +
Sbjct: 170 QWVPGHCGNPGNEAADRLAKATVGVKKRHPFRHLLSRE--KRYIRKNISDEWHQEWRASR 227
Query: 273 NGNKLK 278
NG L+
Sbjct: 228 NGGHLR 233
>gi|357610240|gb|EHJ66888.1| non-LTR retrotransposon CATS [Danaus plexippus]
Length = 476
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 85/176 (48%), Gaps = 23/176 (13%)
Query: 119 FTDGSKTENSTSCA----YTINKNVNSFRLNVVNS--VFSAELMAILLCLQNLKYLPSTK 172
FTDGSK E+ T A Y +N S + + NS VF AEL+AIL + T
Sbjct: 194 FTDGSKLEDGTVGAAFVSYDRGRNPVSKKFKLHNSCTVFQAELLAILKACEWASSNQHTS 253
Query: 173 FLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDV 232
++ +DS +++ AI ++S + L++KI+ST + I F W +H GI GNEA D
Sbjct: 254 TVIYSDSSAAILAIQNRSNTHPLVAKIHST---VHHTSGSIEFAWVKAHVGIVGNEAADT 310
Query: 233 AAKNPSPSFPPLKLCSASDY--------KPLIKKIVQRNWQSSWNSVPNGNKLKTY 280
AAK + KL A DY K + + WQS + S P G K +
Sbjct: 311 AAKRAA------KLHKAPDYTQFPITFIKHYTRSLHASVWQSRYESEPQGQHTKQH 360
>gi|443730613|gb|ELU16038.1| hypothetical protein CAPTEDRAFT_206814 [Capitella teleta]
Length = 233
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 33/167 (19%)
Query: 114 DRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKF 173
D + +TDGSK+E +C T N+ + RL S+FSAEL+AI L L+ K+
Sbjct: 12 DHLPIYTDGSKSETRVACVATANRLLIQVRLPDSASIFSAELLAIYEVLTLLECAAPQKY 71
Query: 174 LLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVA 233
+ +Y+ DLV +WCPSH G+ GNE D+
Sbjct: 72 TI-----------------------LYNRGFDLV-------ILWCPSHIGVVGNERADLL 101
Query: 234 AKNPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKT 279
AK + SF + A D+ + + WQ+ W S+ NKL +
Sbjct: 102 AKE-ALSFTACDVRIPAFDFNSVAYSFYRDKWQALW-SLEQNNKLHS 146
>gi|443733872|gb|ELU18078.1| hypothetical protein CAPTEDRAFT_197082 [Capitella teleta]
Length = 400
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 7/165 (4%)
Query: 114 DRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKF 173
D + DGSK++++ +C+ T + N+ RL S+FSAEL+AI L L+ S
Sbjct: 6 DHKVILIDGSKSDSAVACSATAD-NLQ-IRLPDSASIFSAELLAIYKVLTLLEC--SASS 61
Query: 174 LLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVA 233
TDS+ SLQ I + + + + KI L G ++ WCPSH G+ GNE D+
Sbjct: 62 SSSTDSLLSLQGIGNFNIKHPYVVKILEKCTLLHKKGIDLVMTWCPSHVGVMGNERADLL 121
Query: 234 AKNPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
AK + SF + +SD+KP+ + + WQ W+S NKL
Sbjct: 122 AKE-ALSFTTCTIRIPSSDFKPITHEFYKEKWQEQWSS-EQENKL 164
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 210 GKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSW 268
GK + F+WCPS+ GI GNE D AK + P KL +DYK I+ V+ WQ+
Sbjct: 265 GKLVVFIWCPSYVGILGNEVADRLAKQ-ALVMPVTKLPLPHTDYKSPIRSYVKSLWQNER 323
Query: 269 NSVPNGNKLKTYR 281
+ NKL T +
Sbjct: 324 DE-ETDNKLHTIQ 335
>gi|427783069|gb|JAA56986.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 481
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 120/245 (48%), Gaps = 21/245 (8%)
Query: 54 ITDFIANIDSSEFAPYDK-HIPPWSSVVPSIDTSLHS-GKKDNVSPSVFQVQFLVNINTK 111
I+++ A++ S F+P K IPPW + P + ++ KK +S V + L+ ++ K
Sbjct: 129 ISNYAAHLPSG-FSPASKPAIPPWCFIPPEVHLNVPGIRKKSELSSPVLKQLSLILLHEK 187
Query: 112 YHDRILCFTDGSKTENSTSCAYTI-NKNVN-SFRLNVVNSVFSAELMAILLCLQNLKYLP 169
Y D + +TDGS T +S A + K + SF+ + + +AEL A+ L+ + +
Sbjct: 188 YADHVHVYTDGSTTLQRSSGAVVVPAKAITVSFKTDHPTTSTAAELAALRAALRVVNHEQ 247
Query: 170 STKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDL---VACGKEISFMWCPSHCGISG 226
++ + +DS ++LQ++ S + ++ L + G + F W PSHCG+ G
Sbjct: 248 PQRWSVFSDSKAALQSLLSALRHGPYEQLVFEVRYLLHTSIEKGHHVKFQWLPSHCGVIG 307
Query: 227 NEAVDVAAKNP--SPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSV----------PNG 274
NE D AA++ + + L S +D ++ + Q+ S+WN+ PN
Sbjct: 308 NEHADNAARSALQGDTLETIPL-SRTDAARQLRVVAQKITFSTWNTASRLRNQHHHCPNT 366
Query: 275 NKLKT 279
+L+T
Sbjct: 367 LRLQT 371
>gi|427791927|gb|JAA61415.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1045
Score = 64.7 bits (156), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 5/143 (3%)
Query: 115 RILCFTDGSKTENSTSCAYTINKNVNSFR---LNVVNSVFSAELMAILLCLQNL-KYLPS 170
R+ FTDGS + T+ A + NS R L S +AEL + L L + +P
Sbjct: 771 RLQVFTDGSVMPDGTAAAACVVPARNSSRQCKLPFPASSTAAELAGLHLAADLLAEEIPV 830
Query: 171 TKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAV 230
+++DS S+LQ + + S + + + L A G +SF W PSH GI+GNE
Sbjct: 831 QPVAVLSDSKSALQTLANPRRAGLTGSLLAAKYQALAASGASVSFHWLPSHVGIAGNEEA 890
Query: 231 DVAAKNP-SPSFPPLKLCSASDY 252
D AK P P + +A DY
Sbjct: 891 DTLAKAAHQPGTPYTRAVAARDY 913
>gi|427791585|gb|JAA61244.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1099
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 8/202 (3%)
Query: 74 PPWSSVVPSIDTSLHSGKKDNVSPSV-FQVQFLVNINTKYHDRILCFTDGSKTENSTSCA 132
PPW+ D S+ + +PS + L ++ KY + + +TDGS + ++ SCA
Sbjct: 788 PPWTLEDVICDLSIPGLQSKRSTPSTEARCLVLEHLEMKYSNCLHVYTDGSVSIDNNSCA 847
Query: 133 --YTINK--NVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS 188
Y I S RL+ + S AE AI L+ LK + + ++++D S++Q ++
Sbjct: 848 AAYWIPSIGAAWSGRLDHLVSSTVAESAAIAAALRKLKNGFAQRAVIISDCKSAMQQLSR 907
Query: 189 KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCS 248
+ N + ++ D G I+F W PSH G+SGNE D A P ++
Sbjct: 908 GTPTNNFCRQSLASLKDATKKGXNITFQWIPSHVGVSGNERADALANEALSRQPTIR--- 964
Query: 249 ASDYKPLIKKIVQRNWQSSWNS 270
A + L K+ +Q +++S WNS
Sbjct: 965 APTNQQLPKQTIQSHFRSLWNS 986
>gi|427780027|gb|JAA55465.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 859
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 98/202 (48%), Gaps = 8/202 (3%)
Query: 74 PPWSSVVPSIDTSLHSGKKDNVSPSV-FQVQFLVNINTKYHDRILCFTDGSKTENSTSCA 132
PPW+ D S+ + +PS + L ++ KY + + +TDGS + ++ SCA
Sbjct: 545 PPWTLEDVICDLSIPGLQSKRSTPSTEARCLVLEHLEMKYSNCLHVYTDGSVSIDNNSCA 604
Query: 133 --YTINK--NVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS 188
Y I S RL+ + S AE AI L+ LK + + ++++D S++Q ++
Sbjct: 605 AAYWIPSIGAAWSGRLDHLVSSTVAESAAIAAALRKLKNGFAQRAVIISDCKSAMQQLSR 664
Query: 189 KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCS 248
+ N + ++ D G I+F W PSH G+SGNE D A P ++
Sbjct: 665 GTPTNNFCRQSLASLKDATKKGXNITFQWIPSHVGVSGNERADALANEALSRQPTIR--- 721
Query: 249 ASDYKPLIKKIVQRNWQSSWNS 270
A + L K+ +Q +++S WNS
Sbjct: 722 APTNQQLPKQTIQSHFRSLWNS 743
>gi|154274221|ref|XP_001537962.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415570|gb|EDN10923.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1671
Score = 63.9 bits (154), Expect = 7e-08, Method: Composition-based stats.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 24/175 (13%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVV--------NSVFSAELMAILLCLQNLKYLPS 170
FTD +K ++ A I N R + +V +AEL+AI L YL
Sbjct: 1376 FTDAAKENSALGAAALIMDNSYRIRYGIQVGVGREKHGNVTTAELLAIYHGL----YLRH 1431
Query: 171 TKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
T + +++DS ++L+AI +SK ++ I T L + G ++ W P H GI GNE
Sbjct: 1432 T-YTILSDSRAALRAIANSSKQVGGQIVQNILHTTKQLKSIGVDLCLQWVPGHSGIKGNE 1490
Query: 229 AVDVAAK---NPSPS--FPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLK 278
D AK NP+P+ FP AS + + + W+ W+S G L+
Sbjct: 1491 MADQLAKQSINPNPTHGFPK----PASHLREASRNSTTQEWRDEWSSTAKGTHLR 1541
>gi|427791981|gb|JAA61442.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1060
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 14/196 (7%)
Query: 3 LSLRRSKMIMNYVSKIGSCHRNPIHNEFF-----NRNYDFANHPNTPKPLLMRAREITDF 57
L RR++++ YV K+ S +P H + ++ +AN PN KPL++R E F
Sbjct: 871 LEYRRTQLMFTYVLKVRS---SPDHICYSIVTRSDQRLHYANKPNAIKPLILRFEE--KF 925
Query: 58 IA-NI--DSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHD 114
A NI ++ A + + PWS +D SL KK +P +Q + KYH
Sbjct: 926 HALNIPNEALSIAKRPRSLAPWSDFSMFLDFSLTHIKKQG-TPREHILQEFRTLQEKYHT 984
Query: 115 RILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
+TDGSK + RL SV++AE A+ + ++N+ K +
Sbjct: 985 FNEFYTDGSKASAYVGSSVVGEIYEEVVRLPQFVSVYTAECYALWIAVRNIINSNHKKAV 1044
Query: 175 LVTDSMSSLQAITSKS 190
+ +DS+S+L+A++S+S
Sbjct: 1045 IFSDSLSALRALSSQS 1060
>gi|342867783|gb|EGU72563.1| hypothetical protein FOXB_16927 [Fusarium oxysporum Fo5176]
Length = 1790
Score = 63.9 bits (154), Expect = 8e-08, Method: Composition-based stats.
Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 30/190 (15%)
Query: 111 KYHDRILCFTDGSKTEN---STSCAYTINKNVNSFR-LNVVNSVFSAELMAILLCLQ--- 163
K D I +TDGS+ S + T N+ +++ + V++V++ EL + L LQ
Sbjct: 1483 KEPDAIHIYTDGSRINGHVGSAAVCTTTNQAKSAYMGEDTVSTVYAGELQGVSLALQIAQ 1542
Query: 164 ------NLKYLPSTKFLLVTDSMSSLQAITSKSCNNA--LLSKIYSTWLDLVACGKEISF 215
N++ TK ++ TD+ ++++++ + LL I L A G +
Sbjct: 1543 QDRDQGNVR----TKVMIYTDNQAAIRSVARPRGKSGSYLLQDITQRIQTLRAQGLPVEV 1598
Query: 216 MWCPSHCGISGNEAVDVAAKN-----------PSPSFPPLKLCSASDYKPLIKKIVQRNW 264
W P+H GI GNEA D AAK P PP+ + K +++V R W
Sbjct: 1599 RWIPAHKGIYGNEAADRAAKEATGWRQRGPPGPRAQQPPILRSLKATLKMWSRRVVNRRW 1658
Query: 265 QSSWNSVPNG 274
Q+ W+ G
Sbjct: 1659 QAQWHQETRG 1668
>gi|443691945|gb|ELT93673.1| hypothetical protein CAPTEDRAFT_224783 [Capitella teleta]
Length = 354
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 10/129 (7%)
Query: 149 SVFSAELMAI---LLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLD 205
S+++AEL+AI L+ ++ +K +F + + S+SSL A+++ + L I S +
Sbjct: 2 SIYTAELIAIEQALIFIETMK--DEDQFNICSYSLSSLTALSNCDITHPYLLSILSKQNN 59
Query: 206 LVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKL-CSASDYKPLIKKIVQRNW 264
LV GK + F+WCPSH GI GNE D AK + P KL +DYK I+ V+ W
Sbjct: 60 LVRKGKLVVFVWCPSHLGILGNEVADRLAKQ-ALVMPVTKLPLPQTDYKSPIRSYVKSLW 118
Query: 265 QSSWNSVPN 273
Q N VP
Sbjct: 119 Q---NDVPG 124
>gi|427784657|gb|JAA57780.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 454
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 94/192 (48%), Gaps = 12/192 (6%)
Query: 91 KKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTI--NKNVNSFRLNVVN 148
KK +SP + L ++ Y DR+ +TDGS NS++ A + ++ + FR + +
Sbjct: 140 KKARMSPLALKQLSLRLLDETYFDRMHVYTDGSTNSNSSTGAVVLPSDEVLLQFRYSHIT 199
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAIT---SKSCNNALLSKIYSTWLD 205
+ +AEL A+ ++ + ++ + DS S+L+A+ + + +I + +
Sbjct: 200 TSTAAELAALQGAVKYILQQRPNRWAIFCDSRSALKALRLALRHGLHEQSVYEIRHDYHE 259
Query: 206 LVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPS-----FPPLKLCSASDYKPLIKKI- 259
+ G +I F PSHCGI GN+ D AA++ P L+ +A + L ++I
Sbjct: 260 ELEEGHDIIFELLPSHCGIVGNDHADEAARSAHDQDLRTPIPLLRTDAARRLQSLARRIG 319
Query: 260 -VQRNWQSSWNS 270
+Q N Q +N+
Sbjct: 320 LLQWNTQGFYNA 331
>gi|427784659|gb|JAA57781.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 454
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 94/192 (48%), Gaps = 12/192 (6%)
Query: 91 KKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTI--NKNVNSFRLNVVN 148
KK +SP + L ++ Y DR+ +TDGS NS++ A + ++ + FR + +
Sbjct: 140 KKARMSPLALKQLSLRLLDETYFDRMHVYTDGSTNSNSSTGAVVLPSDEVLLQFRYSHIT 199
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAIT---SKSCNNALLSKIYSTWLD 205
+ +AEL A+ ++ + ++ + DS S+L+A+ + + +I + +
Sbjct: 200 TSTAAELAALQGAVKYILQQRPNRWAIFCDSRSALKALRLALRHGLHEQSVYEIRHDYHE 259
Query: 206 LVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPS-----FPPLKLCSASDYKPLIKKI- 259
+ G +I F PSHCGI GN+ D AA++ P L+ +A + L ++I
Sbjct: 260 ELEEGHDIIFELLPSHCGIVGNDHADEAARSAHDQDLRTPIPLLRTDAARRLQSLARRIG 319
Query: 260 -VQRNWQSSWNS 270
+Q N Q +N+
Sbjct: 320 LLQWNTQGFYNA 331
>gi|427793319|gb|JAA62111.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 333
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 14/193 (7%)
Query: 73 IPPWSSVVPSIDTSLHSGKKDNV--SPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IPPW + P++ ++ KK + SP + Q+ + ++DGSKT S+S
Sbjct: 10 IPPWCLIRPAVHLNVPGIKKKSELSSPVLKQLSLXXX-------HVHIYSDGSKTIRSSS 62
Query: 131 CAYTI-NKNVN-SFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS 188
A + + V SF+ + S +AEL A+ L L ++ + TDS ++LQ++ S
Sbjct: 63 GAVVVPARGVTVSFKTDHPISSTAAELAALRTALCVLNREQPQRWSIFTDSKAALQSLLS 122
Query: 189 KSCNN---ALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLK 245
+ L+ +I G +++F W PSHCG+ GNE D AA++ PL
Sbjct: 123 ALRHGPYEQLVFEIRHLIHTSSEKGHQVTFQWLPSHCGVIGNEHADNAARSALEEVIPLS 182
Query: 246 LCSASDYKPLIKK 258
A+ +I K
Sbjct: 183 RSDAASMLRIIAK 195
>gi|241567430|ref|XP_002402293.1| conserved hypothetical protein [Ixodes scapularis]
gi|215501983|gb|EEC11477.1| conserved hypothetical protein [Ixodes scapularis]
Length = 345
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 6/151 (3%)
Query: 114 DRILCFTDGS-KTENSTSCAYTINKNVN---SFRLNVVNSVFSAELMAILLCLQNLKYLP 169
D + FTDGS T+ A ++ + RL S +AEL AI L+ L P
Sbjct: 65 DWLHVFTDGSVDPVRGTASAAVFIPHIGRRLAERLTFHASSTTAELAAIETGLRELFPWP 124
Query: 170 STKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEA 229
+ ++++DS ++L+ + L + S L L G EI+F W PSHCGI GNE
Sbjct: 125 PGRAVVLSDSRTALRHLLRTDDAPPLARSVVSLTLRLRDRGWEIAFQWVPSHCGIPGNEE 184
Query: 230 VDVAAK--NPSPSFPPLKLCSASDYKPLIKK 258
D A + +P FP +D + L+++
Sbjct: 185 ADKLAGLVHDNPDFPASTASRFNDARLLVRR 215
>gi|169626528|ref|XP_001806663.1| hypothetical protein SNOG_16556 [Phaeosphaeria nodorum SN15]
gi|160706113|gb|EAT76061.2| hypothetical protein SNOG_16556 [Phaeosphaeria nodorum SN15]
Length = 602
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 22/179 (12%)
Query: 119 FTDGSKTENSTSCAYT--INKNVNSFRLNV--VNSVFSAELMAILLCLQ-NLKYLPSTK- 172
+TDGS + T A + + + + V++V++AEL I L LQ +Y+
Sbjct: 302 YTDGSGIDGETGAAAVCPLIQETRAVHMGATTVSTVYAAELQGISLALQIAEQYVERGGK 361
Query: 173 ---FLLVTDSMSSLQAITSKSCNNA--LLSKIYSTWLDLVACGKEISFMWCPSHCGISGN 227
+ TD+ +++ +IT + +L +I L G+ ++ W P+H GI GN
Sbjct: 362 RRDIAVYTDNQAAIWSITKAEGRSGAYILEEIARQVQRLQDKGRPVTVRWIPAHVGIPGN 421
Query: 228 EAVDVAAK-----------NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGN 275
EA D+AAK P PP S + K +R W SW + G
Sbjct: 422 EAADIAAKEATGWRADGRRQPPAEAPPKLFPLKSTLRRWCKTQAERTWADSWRANTKGR 480
>gi|242814149|ref|XP_002486313.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218714652|gb|EED14075.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1193
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 116 ILCFTDGSKTEN---STSCAYTINKNVNSFRLNVVNS-----VFSAELMAIL-------- 159
I F+D S +N + + A N+++ R + S V++AELMAI
Sbjct: 881 ITVFSDASGQQNVLGAAAVALDQNQHIIQHRKVCIGSMEYWSVYAAELMAIYYAISLVLK 940
Query: 160 LCLQNLKYLPSTK--FLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISF 215
+ L+N S + +++DSMS+LQAI++ ++ + + +L A G +
Sbjct: 941 IALENWDTTASQQEPATILSDSMSALQAISNARNKSGQRIIQAVRQSARELKARGIPLRL 1000
Query: 216 MWCPSHCGISGNEAVDVAAKNP---SPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVP 272
W P HCG GNEA D AK P L S K I +Q W+ W +
Sbjct: 1001 QWVPGHCGDPGNEAADRLAKEAVGLDKEHPFQHLLSRE--KGFIHNRIQEEWERGWKTSK 1058
Query: 273 NGNKLK 278
NG L+
Sbjct: 1059 NGGHLR 1064
>gi|74835158|dbj|BAE44464.1| non-LTR retrotransposon CATS [Bombyx mori]
Length = 809
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 8/170 (4%)
Query: 119 FTDGSKTENSTSCAYTINKNVNS-----FRLNVVNSVFSAELMAILLCLQNLKYLPSTKF 173
FTDGSK E A +I + +L +V+ AEL+A+L + + + +
Sbjct: 525 FTDGSKIEGRVGAALSIWEGTGEIKTKKLKLGSYCTVYQAELLALLKATEEVLSGGAATY 584
Query: 174 LLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVA 233
+ D+ S+L I S + L KI + +EI W +H G+ GNE DV
Sbjct: 585 NIFCDARSTLDVIASGESLHPLAFKITKNLKTITERNQEIRLFWIKAHIGLEGNERADVL 644
Query: 234 AKNPSPSF---PPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTY 280
AK + S P C S K I++ W + + + K +
Sbjct: 645 AKEAALSLKCKPHYDRCPVSFAKRTIRQGSVDEWDLRYTTESTASVTKIF 694
>gi|119196745|ref|XP_001248976.1| hypothetical protein CIMG_02747 [Coccidioides immitis RS]
Length = 2000
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 71/287 (24%), Positives = 120/287 (41%), Gaps = 54/287 (18%)
Query: 24 NPIHNEFFNRNYDFANHPNTPKPLLMRAREITDFIANIDSSEFAPYDKHIPP--WSSVVP 81
+P+HN+ D N + + L R I + N+ + H+ P W+
Sbjct: 1498 SPLHNDMAVPGGD--NRRSDTQSPLDRFSSILEHKYNVQLNRLEKRQPHVVPPWWTPPFI 1555
Query: 82 SIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCA--------- 132
I S K++ NT I +TDGS N A
Sbjct: 1556 CIKDSAEEAIKEH--------------NTIEPATICIYTDGSGINNHVGAAAVAPSLQAN 1601
Query: 133 --YTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPST-----KFLLVTDSMSSLQA 185
YT K + ++V++AEL ++L L+ + L +T K + TD+ +++QA
Sbjct: 1602 GGYT--KRTQYMGPSSTSTVYAAELRGLVLALEIILDLHATGATPRKCAIFTDNQAAIQA 1659
Query: 186 ITS---KSCNNALLSKIYSTWLDLVA-CGKEISFMWCPSHCGISGNEAVDVAAKNPS--- 238
I + S LL I + LD++ G E+ F W P+H G+ GNE D AK +
Sbjct: 1660 IRNPKHSSGQYILLEAIQA--LDMLRNFGWEVQFRWIPAHVGVPGNEEADRMAKEATGVD 1717
Query: 239 --------PSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
P PL++ +A+ K I++ ++ W++SW + +G +L
Sbjct: 1718 PGINIERLPETDPLRILTATT-KSTIRQRMKHEWETSWENAKHGREL 1763
>gi|242825777|ref|XP_002488508.1| hypothetical protein TSTA_109310 [Talaromyces stipitatus ATCC
10500]
gi|218712326|gb|EED11752.1| hypothetical protein TSTA_109310 [Talaromyces stipitatus ATCC
10500]
Length = 466
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 25/186 (13%)
Query: 116 ILCFTDGSKTENS-TSCAYTINKNVNSFRLNVVN-------SVFSAELMAILLCLQ-NLK 166
I F + S +N+ + A +++N N + V SV++AELMAI + LK
Sbjct: 130 ITVFFNASGQQNALGAAAVALDQNHNIIQHQKVCIGSIEYWSVYTAELMAIYYAISLVLK 189
Query: 167 YLPSTKFLLV---------TDSMSSLQAI--TSKSCNNALLSKIYSTWLDLVACGKEISF 215
+ +LV +DSMS+LQAI T ++ + +L A G +
Sbjct: 190 IAMENQVILVGQQEPATILSDSMSALQAISNTRNKSGQRIIQAVQQAAQELKARGIPLCL 249
Query: 216 MWCPSHCGISGNEAVDVAAKNP---SPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVP 272
W P HC GNEA + AK P L S K I+ +Q +W+ W +
Sbjct: 250 QWMPGHCDNPGNEAANRLAKEAVSLDKEHPFQHLLSRE--KGFIRNRIQEDWEQGWRTSK 307
Query: 273 NGNKLK 278
NG L+
Sbjct: 308 NGGHLR 313
>gi|383860150|ref|XP_003705554.1| PREDICTED: leucine-rich repeat-containing protein 15-like
[Megachile rotundata]
Length = 635
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 3/170 (1%)
Query: 76 WSSVVPSI--DTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAY 133
+S +P I +TSL + K N P + + F + ++ + + +TDGSKT + A
Sbjct: 2 YSKTIPRISTNTSLLNYSKKNSDPIMLEAIF-QELEAEFANHVHIYTDGSKTRIGSGYAI 60
Query: 134 TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNN 193
N++ + + +F EL AI +++ +T F + DS S++ AI ++
Sbjct: 61 VRNQSTEKVKFHHKTPIFLCELQAITHAIKSTLTDQNTNFAIFCDSTSAISAIQKLWTSD 120
Query: 194 ALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPP 243
++ + + I+ MW SH I+GN+ D AAK + S P
Sbjct: 121 FVIQECQEAYTRSSQKNNSITIMWILSHIDITGNDKADRAAKEAANSTTP 170
>gi|322702355|gb|EFY94018.1| reverse transcriptase, putative [Metarhizium anisopliae ARSEF 23]
Length = 639
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 25/160 (15%)
Query: 125 TENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ-----NLKYLPSTKFLLVTDS 179
T N T AY + NV++ ++ EL I L LQ + K L+ TD+
Sbjct: 373 TINQTKSAYMGDDNVST--------AYAGELQGISLALQIAQEDRNRGSIREKVLIYTDN 424
Query: 180 MSSLQAITSKSCNNA--LLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP 237
++++++ + LL I +L A G + W P+H GI GNEA D AAKN
Sbjct: 425 QAAVRSVARPRGESGSYLLQDITRRMQELQAQGLTVEDRWIPAHTGIHGNEAADQAAKNA 484
Query: 238 S---PSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNG 274
+ PP S + V + WQ+ W G
Sbjct: 485 TGWRKKGPPGPKAQRS-------QRVNKRWQAQWQQETRG 517
>gi|6635955|gb|AAF20019.1|AF134900_2 pol-like protein [Aedes aegypti]
Length = 1208
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 67/167 (40%), Gaps = 14/167 (8%)
Query: 103 QFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCL 162
+ L + YH R FTDGSK + T T +RL SVFSAE AILL
Sbjct: 942 ELLASKYRNYHHR---FTDGSKYLDRTGFGVTDIDKSYFYRLPDQCSVFSAEAAAILLA- 997
Query: 163 QNLKYLPSTK-FLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSH 221
P+ K +++DS S L I S S + + + + F+W P H
Sbjct: 998 ---STTPAPKPICVISDSASVLATINSSSTRHPWIQAVQKN------SPSQTVFLWVPGH 1048
Query: 222 CGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSW 268
CGI GN D A +L D K K ++ +W W
Sbjct: 1049 CGIRGNVEADHLASKGRSGRLFTRLTPGMDLKNWTKSQIRSSWALEW 1095
>gi|425780653|gb|EKV18659.1| hypothetical protein PDIG_09730 [Penicillium digitatum PHI26]
Length = 501
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 30/189 (15%)
Query: 113 HDRI-LCFTDGSKTENSTSCAY-TINKNVNSFR----LNVVNSVFSAELMAILLCLQNLK 166
DR + FTDGS + ++ + V+S R + ++V++AEL I + L K
Sbjct: 162 QDRASMLFTDGSGFAGHIGASMVSLQQGVSSQRRYLGTDSQSTVYAAELSGIEMALAKAK 221
Query: 167 YLPSTKFLLVTDSMSSLQAIT--SKSCNNALLSKIYSTWLDLVACGKE------ISFMWC 218
+ + ++ +DS +++QA+ + +L++IY + + + ++ W
Sbjct: 222 KEQAREVIIFSDSQAAIQAVQNPKRPSGQYILTRIYDHLRAIRSRNQVQQEPTIVTIRWI 281
Query: 219 PSHCGISGNEAVDVAAKNPS--------------PSFPPLKLCSASDYKPLIKKIVQRNW 264
P+H G+SGNE D AK + P P ++L +A+ K +++ V+ W
Sbjct: 282 PAHVGVSGNEYADTEAKGAALLGAGIGTTTGSGDPGRPTIRLAAAA--KRAVRQRVRERW 339
Query: 265 QSSWNSVPN 273
+ S P
Sbjct: 340 ERETTSAPT 348
>gi|321462343|gb|EFX73367.1| hypothetical protein DAPPUDRAFT_253251 [Daphnia pulex]
Length = 159
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 11/153 (7%)
Query: 97 PSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTI-NKNVN-SFRLNVVNSVFSAE 154
P + + FL ++ + I FT +N +CA+TI +++VN +++L +S+FSAE
Sbjct: 6 PGLARATFLELYESQPANTINVFT---GRDNRAACAFTIPSRDVNKAWKLPDNSSIFSAE 62
Query: 155 LMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCN-NALLSKIYSTWLDLVACGKEI 213
L AI L + + +DS++S+ AI ++ + + L+ I T +L++ G
Sbjct: 63 LAAIRQALDYIYNFEIAVVNIFSDSLASVMAIHNQRVDSHHLIKDIRQTVSNLLSSGTRT 122
Query: 214 SFMWCPSHCGISGNEAVDVAA----KNP-SPSF 241
+F+W PSH I GNE D A +P SPSF
Sbjct: 123 NFIWIPSHVTIPGNERADELATQCLSDPVSPSF 155
>gi|391865317|gb|EIT74602.1| reverse transcriptase [Aspergillus oryzae 3.042]
Length = 428
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 21/177 (11%)
Query: 116 ILCFTDGSKTEN-------STSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKY- 167
I +TDGS S + + N+ + S ++V++ EL I + L L+
Sbjct: 138 IAVYTDGSGLNGRIGASAVSIAQGWIRNRTLGS---EEESTVYAGELTGIRMALHKLRKE 194
Query: 168 -LPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGI 224
P+T F+ DS +++QA+ + + +L +IY + + W P+H G+
Sbjct: 195 KTPATIFV---DSQAAIQAVQNPRRPSGQYILDQIYYI-IRRYNMQNRVQIRWIPAHIGV 250
Query: 225 SGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTYR 281
GNEA D AA+ + +C A+ K I++ ++ W W + G TYR
Sbjct: 251 PGNEAADEAAREGTQRTGE-AICLAAAVKRQIRRSIKDRWIREWKTEKTGR--TTYR 304
>gi|154276412|ref|XP_001539051.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414124|gb|EDN09489.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 377
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 29/186 (15%)
Query: 118 CFTDGSKTENSTSCAYTINKNVNSFRLNVVN--------SVFSAELMAILLCLQNLKYLP 169
FTD +K ++ A I + + +V +AEL+AI L +
Sbjct: 66 VFTDAAKENSALGAAALIMDESYHIQYGIQVGVGREKHWTVTTAELLAIYHGLYLVWRSH 125
Query: 170 STK----------FLLVTDSMSSLQAIT--SKSCNNALLSKIYSTWLDLVACGKEISFMW 217
S++ + +++DS ++L+AI SK ++ I T +L + G ++ W
Sbjct: 126 SSEGTPPPHQRHTYTILSDSRTALRAIANASKQVGGQIIQNILHTTKELRSIGVDLCLQW 185
Query: 218 CPSHCGISGNEAVDVAAK-----NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVP 272
P H GI GNE D AK NP+ FP AS + + + W+ W+S
Sbjct: 186 VPGHSGIKGNEMADQLAKQSINPNPTHGFPK----PASHLREASRNSTTQEWRDEWSSTA 241
Query: 273 NGNKLK 278
G L+
Sbjct: 242 KGTHLR 247
>gi|154278122|ref|XP_001539883.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413468|gb|EDN08851.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 765
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 29/186 (15%)
Query: 118 CFTDGSKTENSTSCAYTINKNVNSFRLNVVN--------SVFSAELMAILLCLQNLKYLP 169
FTD +K ++ A I + + +V +AEL+AI L +
Sbjct: 454 VFTDAAKENSALGAAALIMDESYHIQYGIQVGVGREKHWTVTTAELLAIYHGLYLVWRSH 513
Query: 170 STK----------FLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWLDLVACGKEISFMW 217
S++ + +++DS ++L+AI +SK ++ I T +L + G ++ W
Sbjct: 514 SSEGTPTPHQRHTYTILSDSRTALRAIANSSKQVGGQIVQNILHTTKELRSIGVDLCLQW 573
Query: 218 CPSHCGISGNEAVDVAAK-----NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVP 272
P H GI GNE D AK NP+ FP AS + + + W+ W+S
Sbjct: 574 VPGHSGIKGNEMADQLAKQSINPNPTRGFPK----PASHLREASRNSTTQEWRDEWSSTA 629
Query: 273 NGNKLK 278
G L+
Sbjct: 630 KGTHLR 635
>gi|134080425|emb|CAK41174.1| unnamed protein product [Aspergillus niger]
Length = 1288
Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 116 ILCFTDGSKTENST-SCAYTINKN---VNSFRLNVVN----SVFSAELMAILLCL----- 162
I F+D S EN + A ++ N V S ++++ + SV++AELMAI +
Sbjct: 960 ITVFSDASGKENQLGAAAVALDHNQRIVGSRQVSIGSMEFWSVYAAELMAIYYAIGLVFQ 1019
Query: 163 -----QNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISF 215
Q + + +++DSMS+LQ I + ++ I+ + +L A G +
Sbjct: 1020 LAQKNQRSRATDAEPATILSDSMSALQVIKNSWNKSGQRIIQAIHQSAGELRARGIPLRL 1079
Query: 216 MWCPSHCGISGNEAVDVAAK---NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVP 272
W P HCG GNEA D AK P L S K I++ + W W +
Sbjct: 1080 QWVPGHCGNPGNEAADRLAKATVGGEKRHPFRHLLSRE--KRYIRRNISDEWHQEWRASR 1137
Query: 273 NGNKLK 278
NG L+
Sbjct: 1138 NGGHLR 1143
>gi|12597214|dbj|BAB21511.1| TRAS3 [Bombyx mori]
Length = 1682
Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 10/191 (5%)
Query: 88 HSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINK---NVNSFRL 144
H ++ ++ + Q V+ N+ Y + I FTDGSK A +I K + +L
Sbjct: 1371 HPVERADLQIVCLEDQEQVDGNSDYDECI--FTDGSKIGGKVGAALSIWKGDTETKTRKL 1428
Query: 145 NVVN--SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYST 202
+ N +V+ AEL+A+ + ++ S F + +DSMS+LQ IT+ + L +
Sbjct: 1429 ALSNYCTVYQAELLALCVATTEVRKSKSKSFGVYSDSMSALQTITNYDSPHPLAVEARQN 1488
Query: 203 WLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP---SPSFPPLKLCSASDYKPLIKKI 259
+ GK ++ W +H G+ GNE D AK S P C S K ++
Sbjct: 1489 IKASLLQGKAVTLHWIKAHAGLKGNERADGLAKEAAENSRKRPDYDRCPISFVKRSLRMT 1548
Query: 260 VQRNWQSSWNS 270
W + +
Sbjct: 1549 TLEEWNRRYTT 1559
>gi|317033408|ref|XP_001395701.2| reverse transcriptase [Aspergillus niger CBS 513.88]
Length = 1618
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 116 ILCFTDGSKTENST-SCAYTINKN---VNSFRLNVVN----SVFSAELMAILLCL----- 162
I F+D S EN + A ++ N V S ++++ + SV++AELMAI +
Sbjct: 1290 ITVFSDASGKENQLGAAAVALDHNQRIVGSRQVSIGSMEFWSVYAAELMAIYYAIGLVFQ 1349
Query: 163 -----QNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISF 215
Q + + +++DSMS+LQ I + ++ I+ + +L A G +
Sbjct: 1350 LAQKNQRSRATDAEPATILSDSMSALQVIKNSWNKSGQRIIQAIHQSAGELRARGIPLRL 1409
Query: 216 MWCPSHCGISGNEAVDVAAK---NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVP 272
W P HCG GNEA D AK P L S K I++ + W W +
Sbjct: 1410 QWVPGHCGNPGNEAADRLAKATVGGEKRHPFRHLLSRE--KRYIRRNISDEWHQEWRASR 1467
Query: 273 NGNKLK 278
NG L+
Sbjct: 1468 NGGHLR 1473
>gi|427791993|gb|JAA61448.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1031
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 4/159 (2%)
Query: 81 PSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVN 140
P + SL K + Q + + + FTDGS + T+ A + +
Sbjct: 872 PEVHLSLDGATKRRTPAAALQQAATCKLQEQLRGCLQVFTDGSVMPDGTAAAACVIPSWA 931
Query: 141 SFR---LNVVNSVFSAELMAILLCLQNL-KYLPSTKFLLVTDSMSSLQAITSKSCNNALL 196
+ R L S +AEL + L L + LP+ ++ DS ++LQ + +
Sbjct: 932 TSRQCQLPFPASSTAAELAGLHLAADLLAENLPTEPVAVLCDSRAALQTLANHRRAGLTG 991
Query: 197 SKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK 235
S + S + L A G +SF W PSH GI+GNE D AK
Sbjct: 992 SLLASKFRALTASGASVSFHWLPSHVGIAGNEEADTLAK 1030
>gi|83776064|dbj|BAE66183.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1301
Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 119 FTDGSKTENST-SCAYTINKN---VNSFRLNVVN----SVFSAELMAIL--------LCL 162
F+D S +N + A ++KN + S ++++ + SV++AELMAI L
Sbjct: 976 FSDASGQQNQLGAAAVALDKNQQILGSRQISIGSMSYWSVYAAELMAIYYAIGLVFQLAQ 1035
Query: 163 QNLKYLPSTK--FLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWC 218
+N +T+ +++DSMS+LQAI + +L I+ +L A G + W
Sbjct: 1036 KNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRILQAIHQAAGELKARGIPLRLQWV 1095
Query: 219 PSHCGISGNEAVDVAAKNP---SPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGN 275
P HCG GNE D AK P L S K I+ + + W+ W + G
Sbjct: 1096 PGHCGDPGNETADRLAKEAVGLEKKHPFRHLLSRE--KGYIRDRISKEWEQEWRTSKKGG 1153
Query: 276 KLK 278
L+
Sbjct: 1154 HLR 1156
>gi|331242530|ref|XP_003333911.1| hypothetical protein PGTG_15334 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 475
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 29/212 (13%)
Query: 74 PPWSS---VVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
PPW S + ID S K+ VS +L +++ + D +L FTDGS
Sbjct: 242 PPWKSRRHIATIIDRQSKSAAKETVSC------YLESVD--HTDTLLVFTDGSAHPKEGL 293
Query: 131 CAYTINKNVNSFRLNVVN-----SVFSAELMAILLCLQNLKYLPST----KFLLVTDSMS 181
A + + S ++ + S F EL+ I L L+ + L + + +L+TDS +
Sbjct: 294 GAAAVTADGLSVQMAFLGPPEIASNFECELVGIRLGLEMGRVLTTEAGFRQIVLLTDSQA 353
Query: 182 SLQAITSKSC---NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDV---AAK 235
+++ + LLS+I +++ I+ WCP H GI+GN+ D A+
Sbjct: 354 AIERMRRPGLPKSGQYLLSQIQEA-AEMIPPFVYITVRWCPGHVGIAGNKLADAKAGEAR 412
Query: 236 NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSS 267
NP+ +++ + L+ K Q+ W+ S
Sbjct: 413 NPAFRDTSIRISVTQEKSRLLSK--QKLWKRS 442
>gi|427779363|gb|JAA55133.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 417
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 98/190 (51%), Gaps = 8/190 (4%)
Query: 54 ITDFIANIDSSEFAPYDK-HIPPWSSVVPSIDTSLHS-GKKDNVSPSVFQVQFLVNINTK 111
I+++ A++ S F+P K IPPW + P + ++ KK +S V + L+ ++ K
Sbjct: 129 ISNYAAHLPSG-FSPASKPAIPPWCFIPPEVHLNVPGIRKKSELSSPVLKQLSLLLLHEK 187
Query: 112 YHDRILCFTDGSKTENSTSCAYTI-NKNVN-SFRLNVVNSVFSAELMAILLCLQNLKYLP 169
Y D + +TDGS T +S A + K + SF+ + + +AEL A+ L+ +
Sbjct: 188 YADHVHVYTDGSTTLQRSSGAVVVPAKAITISFKTDHPTTSTAAELAALRAALRVVNREQ 247
Query: 170 STKFLLVTDSMSSLQAITSKSCNN---ALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226
++ + +DS ++LQ++ S + L+ ++ + G + F W PSHCG+ G
Sbjct: 248 PQRWSVFSDSKAALQSLLSALRHGPYEQLVFEVRHLLHTSIEKGHHVKFQWLPSHCGVIG 307
Query: 227 NEAVDVAAKN 236
NE D AA++
Sbjct: 308 NEHADSAARS 317
>gi|317159440|ref|XP_001827316.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1607
Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 119 FTDGSKTENST-SCAYTINKN---VNSFRLNVVN----SVFSAELMAIL--------LCL 162
F+D S +N + A ++KN + S ++++ + SV++AELMAI L
Sbjct: 1282 FSDASGQQNQLGAAAVALDKNQQILGSRQISIGSMSYWSVYAAELMAIYYAIGLVFQLAQ 1341
Query: 163 QNLKYLPSTK--FLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWC 218
+N +T+ +++DSMS+LQAI + +L I+ +L A G + W
Sbjct: 1342 KNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRILQAIHQAAGELKARGIPLRLQWV 1401
Query: 219 PSHCGISGNEAVDVAAKNP---SPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGN 275
P HCG GNE D AK P L S K I+ + + W+ W + G
Sbjct: 1402 PGHCGDPGNETADRLAKEAVGLEKKHPFRHLLSRE--KGYIRDRISKEWEQEWRTSKKGG 1459
Query: 276 KLK 278
L+
Sbjct: 1460 HLR 1462
>gi|317156031|ref|XP_003190671.1| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1607
Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 119 FTDGSKTENST-SCAYTINKN---VNSFRLNVVN----SVFSAELMAIL--------LCL 162
F+D S +N + A ++KN + S ++++ + SV++AELMAI L
Sbjct: 1282 FSDASGQQNQLGAAAVALDKNQQILGSRQISIGSMSYWSVYAAELMAIYYAIGLVFQLAQ 1341
Query: 163 QNLKYLPSTK--FLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWC 218
+N +T+ +++DSMS+LQAI + +L I+ +L A G + W
Sbjct: 1342 KNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRILQAIHQAAGELKARGIPLRLQWV 1401
Query: 219 PSHCGISGNEAVDVAAKNP---SPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGN 275
P HCG GNE D AK P L S K I+ + + W+ W + G
Sbjct: 1402 PGHCGDPGNETADRLAKEAVGLEKKHPFRHLLSRE--KGYIRDRISKEWEQEWRTSKKGG 1459
Query: 276 KLK 278
L+
Sbjct: 1460 HLR 1462
>gi|154270239|ref|XP_001535976.1| hypothetical protein HCAG_09089 [Ajellomyces capsulatus NAm1]
gi|150410083|gb|EDN05471.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 832
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 33/188 (17%)
Query: 118 CFTDGSKTENSTSCAYTINKNVNSFRLNVVN----------SVFSAELMAILLCLQNLKY 167
FTD +K ENS A + + NS+R+ +V +AEL+AI L +
Sbjct: 521 VFTDAAK-ENSVLGAAVLIMD-NSYRIQYGIQVGVGREKHWTVTTAELLAIYHGLYLVWR 578
Query: 168 LPSTK----------FLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWLDLVACGKEISF 215
S++ + +++DS ++L+AI +SK ++ I T L + G ++
Sbjct: 579 SHSSEGTPPPHQHHTYTILSDSHTALRAIANSSKQVGGQIVQNILRTTKQLKSIGIDLCL 638
Query: 216 MWCPSHCGISGNEAVDVAAK-----NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
W P H GI GNE D AK NP+ FP AS + + W+ W+S
Sbjct: 639 QWVPGHSGIRGNEMADQLAKQSINPNPTHGFPK----PASHLREASRNSTTHEWRDEWSS 694
Query: 271 VPNGNKLK 278
G L+
Sbjct: 695 TAKGTHLR 702
>gi|443730003|gb|ELU15698.1| hypothetical protein CAPTEDRAFT_201116 [Capitella teleta]
Length = 243
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 9/111 (8%)
Query: 168 LPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGN 227
LPS++ ++ SL A+++ + L I + +LV GK + F+WCPSH GI GN
Sbjct: 100 LPSSR------TIRSLTALSNCDITHPYLLSILTKQNNLVRKGKLVVFIWCPSHVGILGN 153
Query: 228 EAVDVAAKNPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
E D AK + P KL +DYK I+ V+ WQ+ W+ NKL
Sbjct: 154 EVADRLAKQ-ALVMPVTKLPLPHTDYKSPIRSYVKSLWQNEWDE-ETDNKL 202
>gi|294889789|ref|XP_002772958.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239877569|gb|EER04774.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 382
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 119 FTDGSKTENSTSCAYTINKN-----VNSFRLNVVNSVFSAELMAILLCLQNLKYLP--ST 171
+TDGSK +S A+ K +F+L ++ EL AI L+ L Y
Sbjct: 197 YTDGSKFGDSAGGAFLAVKEGEVVERQAFKLERFATIHQCELEAIRRALRWLSYSAHRGI 256
Query: 172 KFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEA 229
++LL TDS +S++ I + +A+ I L + ++ WCP H G+ NEA
Sbjct: 257 EWLLFTDSQASIRTIRGREATERSAIARDIAHLSLHV-----KVQLNWCPGHEGVQWNEA 311
Query: 230 VDVAAKNPSPSFPPLKLCSA-----SDYKPLIKKIVQRNWQSSW 268
VD A PL +A S K ++K ++++ +S W
Sbjct: 312 VDQLANTGRKQLFPLDRGAAMMVPPSYVKHMLKTQMEKDTRSWW 355
>gi|242797147|ref|XP_002482953.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218719541|gb|EED18961.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1538
Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAIT-SKSCNNALLSKIYSTWLDLV 207
+VF AEL+ I + L+ ++ K ++ DS +++QAI ++ +L I W +L
Sbjct: 1267 NVFLAELVGIHMALEMVQQRIVRKMIIFYDSQAAIQAIDGAQKTGQQILGSIAEKWDELR 1326
Query: 208 ACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
+ G +++ W P+H GI GNE D+AAK +
Sbjct: 1327 SQGVQVTIHWIPAHQGIEGNERADIAAKEAT 1357
>gi|321453153|gb|EFX64418.1| hypothetical protein DAPPUDRAFT_266424 [Daphnia pulex]
Length = 352
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 19/222 (8%)
Query: 57 FIANID----SSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKY 112
+A+ID E P+ + PPW +I S + +PS + F + +
Sbjct: 5 ILADIDLFQAEPEQYPHLQERPPWKEPPIAIRYFPLSKQMSMNNPSEARALFNQIKHNHF 64
Query: 113 HDRILCFTDGS---KTENSTSCAYTINKNVN-SFRLNVVNSVFSAELMAILLCLQNLKYL 168
+ + +TDGS T +TS + N+ + L+ +SVF+ E AI L+ + +L
Sbjct: 65 NASTIAYTDGSLNKSTGKTTSAVIIPSLNIEEATTLSRNSSVFTVEAEAINRTLELVYHL 124
Query: 169 PS--TKFLLVTDSMSSLQAITS-KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGIS 225
K + +DS S +Q+I S K +++ I +T +L + G +I+ W PSH GI
Sbjct: 125 DDEVAKLTIFSDSRSVVQSIESPKKEKYPIINAILTTADNLKSAGTKINLYWIPSHVGIP 184
Query: 226 GNEAVD-VAAKNPSPSFPPLKLC-------SASDYKPLIKKI 259
GN A D +A++ + FP L A+ +K ++KI
Sbjct: 185 GNGAADRLASEESNQLFPSRSLKNFLSSAEQAAVFKEYLRKI 226
>gi|427791645|gb|JAA61274.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 891
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 104/241 (43%), Gaps = 17/241 (7%)
Query: 3 LSLRRSKMIMNYVSKIGSCHRNPIHNEF--FNRNYDFANHPNTPKPLLMRAR---EITDF 57
L L+R M Y K+ + +P H + + F N P+ +P +R R E TD
Sbjct: 659 LHLQRCYMSFVYYLKVNADREHPFHATINDLSSSTLFDNRPSLRQPYSLRVRGLAEETD- 717
Query: 58 IANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRIL 117
+ ++ AP ++PPW + D S K +P + + KY
Sbjct: 718 VPLVEHRLMAP-AAYLPPWQWQLIDCDVSFVEVTKH--APIAHIRTHFLELQHKYS---- 770
Query: 118 C---FTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
C FTD SKT S S A + L+ S+F+AE AIL +++K L K +
Sbjct: 771 CPEFFTDASKTHTSVSYAAVGPSFSDVGVLHKNTSIFTAEAYAILAAAKHIKQLKLPKAV 830
Query: 175 LVTDSMSSLQAI-TSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVA 233
+ TDS+S ++A+ T K N +L +Y+ A + + W P H I GN D
Sbjct: 831 IYTDSLSVVKALKTMKKHKNPVLVSLYTILCTSYAVKQRVVVCWVPGHREIPGNMLADEL 890
Query: 234 A 234
A
Sbjct: 891 A 891
>gi|259482037|tpe|CBF76131.1| TPA: hypothetical protein ANIA_10625 [Aspergillus nidulans FGSC A4]
Length = 486
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 12/173 (6%)
Query: 116 ILCFTDGSKTENSTSCA-----YTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPS 170
I +TDGS A Y I+++ + ++V+ AEL ILL L +
Sbjct: 183 IALYTDGSGINGRVGAAAICPKYLISRS-SYMGQQSESTVYVAELQGILLALVIILQRQM 241
Query: 171 TKFLLVTDSMSSLQAITSKSCNNA--LLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
++ TD+ ++LQA+ + + +L I G + F W P+H G+ GNE
Sbjct: 242 QHAVIFTDNQATLQALRNPGSQSGQYILEAIIMALNKGRKAGLNVHFRWIPAHRGVEGNE 301
Query: 229 AVDVAAKNPSP----SFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
D AK + ++ S K ++V W++ W S +G +L
Sbjct: 302 QADRRAKEATGWRRIRGHRGRMTIRSAVKRRAHEVVNARWENDWKSCHHGREL 354
>gi|255940918|ref|XP_002561228.1| Pc16g09090 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585851|emb|CAP93579.1| Pc16g09090 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 696
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 25/186 (13%)
Query: 116 ILCFTDGSKTENSTSCAYTINKN----VNSFRLNVVN----SVFSAELMAILLCLQNL-- 165
I+ ++D S E A N + S ++ V SV AEL+ I + +
Sbjct: 384 IVVYSDASGREGHLGAAAVALGNDLQVIESQQVQVGPMDRWSVHVAELIGIFYAVSTVFK 443
Query: 166 --------KYLPSTKFLLVTDSMSSLQAIT--SKSCNNALLSKIYSTWLDLVACGKEISF 215
++ +T ++ DS S+LQAI ++ I ++ A G +
Sbjct: 444 ISHQRPRTEHNRTTTATILCDSKSALQAIENPGNKSGQRIIHAILQAAAEVQAKGIALRL 503
Query: 216 MWCPSHCGISGNEAVDVAAKN---PSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVP 272
W P HC GN+A D AK+ P + P L + + LI+ ++ W+ WN+
Sbjct: 504 QWIPGHCDDPGNDAADRLAKDAASPGKTHPFRPLLTRK--RALIRDKIRAQWEREWNAST 561
Query: 273 NGNKLK 278
NG L+
Sbjct: 562 NGGHLR 567
>gi|427783055|gb|JAA56979.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 485
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 93/206 (45%), Gaps = 16/206 (7%)
Query: 73 IPPWSSVVPSIDTSLHS-GKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSC 131
+PPW + P++ S+ KK +S V + L+ ++ +Y D + +TDGS +S
Sbjct: 148 MPPWGLIRPTVHLSVPGIRKKSELSSPVLKQLSLLLLHERYADSVHIYTDGSTNLQFSSG 207
Query: 132 AYTINKNVN--SFRLN--VVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAIT 187
A + SFR + ++ + LC N + P ++ + +DS ++LQ++
Sbjct: 208 AVVVPARAITISFRTDHPTTSTAAELAALRAALCFVNRE--PPQQWSIFSDSKAALQSML 265
Query: 188 S---KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK------NPS 238
S + L+ +I G ++F W PSHCG+ GNE D AA+
Sbjct: 266 SALRRGPYEQLVFEIRGLLHASHEKGHHVTFQWLPSHCGVIGNEHADNAARAALEDTTQE 325
Query: 239 PSFPPLKLCSASDYKPLIKKIVQRNW 264
+ P + +AS + L ++I W
Sbjct: 326 DTIPLSRSDAASSLRGLAQEITLSLW 351
>gi|427780715|gb|JAA55809.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 481
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 10/187 (5%)
Query: 91 KKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTI-NKNVN-SFRLNVVN 148
+K S Q L+ ++ K+ R+ +TDGS + S++ A I K+V F+ + +
Sbjct: 167 RKKQSSNLALQQATLLFLHEKHSGRLHIYTDGSVSSASSAGAVVIPEKSVTIKFKTSHLT 226
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS---KSCNNALLSKIYSTWLD 205
S +AEL AI L+ + P + + +DS ++LQ I S + N L++ I
Sbjct: 227 SSTAAELTAIRAALEFVVKEPPQAWSIFSDSKAALQCIMSPFRRGPNEQLVADIRILHHR 286
Query: 206 LVACGKEISFMWCPSHCGISGNEAVDVAAKNPS-----PSFPPLKLCSASDYKPLIKKIV 260
V I + W P HCGI GN+ D AA++ + P + +A+ + L +++
Sbjct: 287 AVEKQHNIVYQWIPGHCGIYGNDRADEAARSAHDALHCAAIPLSRTDAATRLRSLARELT 346
Query: 261 QRNWQSS 267
W S+
Sbjct: 347 LAQWHST 353
>gi|67537820|ref|XP_662684.1| hypothetical protein AN5080.2 [Aspergillus nidulans FGSC A4]
gi|40740985|gb|EAA60175.1| hypothetical protein AN5080.2 [Aspergillus nidulans FGSC A4]
Length = 804
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 12/173 (6%)
Query: 116 ILCFTDGSKTENSTSCA-----YTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPS 170
I +TDGS A Y I+++ + ++V+ AEL ILL L +
Sbjct: 183 IALYTDGSGINGRVGAAAICPKYLISRS-SYMGQQSESTVYVAELQGILLALVIILQRQM 241
Query: 171 TKFLLVTDSMSSLQAITSKSCNNA--LLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
++ TD+ ++LQA+ + + +L I G + F W P+H G+ GNE
Sbjct: 242 QHAVIFTDNQATLQALRNPGSQSGQYILEAIIMALNKGRKAGLNVHFRWIPAHRGVEGNE 301
Query: 229 AVDVAAKNPSP----SFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
D AK + ++ S K ++V W++ W S +G +L
Sbjct: 302 QADRRAKEATGWRRIRGHRGRMTIRSAVKRRAHEVVNARWENDWKSCHHGREL 354
>gi|154284203|ref|XP_001542897.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411077|gb|EDN06465.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1672
Score = 56.2 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 173 FLLVTDSMSSLQAIT--SKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAV 230
+ +++DS ++L+AI SK ++ I T +L + G ++ W P H GI GNE
Sbjct: 1434 YTILSDSRTALRAIANASKQVGGQIIQNILHTTKELRSIGVDLCLQWVPGHSGIKGNEMA 1493
Query: 231 DVAAK---NPSPS--FPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLK 278
D AK NP+P+ FP AS + + + W+ W+S G L+
Sbjct: 1494 DQLAKQSINPNPTHGFPK----PASHLREASRNSTTQEWRDEWSSTAKGTHLR 1542
>gi|294951625|ref|XP_002787074.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239901664|gb|EER18870.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 370
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 119 FTDGSKTENSTSCAYTINKN-----VNSFRLNVVNSVFSAELMAILLCLQNLKYLP--ST 171
+TDGSK +S A+ K +F+L ++ EL AI L+ L Y
Sbjct: 81 YTDGSKFGDSAGGAFLAVKEGEVVERQAFKLERFATIHQCELEAIRRALRWLSYSAHRGI 140
Query: 172 KFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEA 229
++LL TDS +S++ I + +A+ I L + ++ WCP H G+ NEA
Sbjct: 141 EWLLFTDSQASIRTIRGREATERSAIARDIAHLSLHV-----KVQLNWCPGHEGVQWNEA 195
Query: 230 VDVAAKNPSPSFPPLKLCSA-----SDYKPLIKKIVQRNWQSSW 268
VD A PL +A S K +K ++++ +S W
Sbjct: 196 VDQLANTGRKQLFPLDRGAALMVPPSFVKHQLKTQMEKDTRSWW 239
>gi|1549144|dbj|BAA07467.1| ORF2 [Bombyx mori]
Length = 1162
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 12/169 (7%)
Query: 109 NTKYHDRILCFTDGSKTENSTSCAYTI---NKNVNSFRLNVVN--SVFSAELMAILLCLQ 163
N H + FTDGSK E A +I + S +L + +V+ AEL+A+ ++
Sbjct: 879 NNLNHLDVRIFTDGSKIEGRVGAALSIWDGEVEIRSLKLALAPYCTVYQAELLALSYAVK 938
Query: 164 NLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCG 223
+ + F + +DS ++L + + + L I K ++ W +H G
Sbjct: 939 EAQLRNGSTFGVFSDSKAALLTVINHGSLHPLAVDIRKMLKQCALQNKTVALYWIKAHAG 998
Query: 224 ISGNEAVDVAAKNP---SPSFPPLKLCSASDYKPLIKKIVQRNWQSSWN 269
+ GNE D AK S P LC S +K+I++ WN
Sbjct: 999 LEGNERADQLAKEAALLSKKSPNYDLCPVS----YVKRIIRSGSLDEWN 1043
>gi|189242251|ref|XP_001808188.1| PREDICTED: similar to pol-like protein [Tribolium castaneum]
Length = 1808
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 10/147 (6%)
Query: 3 LSLRRSKMIMNYVSKIGSCHRNPIHNEFF-NRNYDFANHPNTPKPLLMRAREITDFIANI 61
L RRS++I+ Y +KI + NP HN F NR D + P R +I N+
Sbjct: 1248 LEARRSELILRYAAKISANKTNPAHNMMFPNRKEDLFSRKVKLTPPAYRRIKIASVNLNL 1307
Query: 62 DSSEFAPYDK-HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQ---FLVNINTKYHDRIL 117
P+ + PPW+ P + T L + KD SV + + L +I++ Y +
Sbjct: 1308 SLPITYPFQRSKTPPWTYNKPRVHTELLNLVKDKPLKSVLKTKLAALLTSISSNY----I 1363
Query: 118 CFTDGSKTENSTSCAYTINKNVNSFRL 144
+TD SK++ + AY N +FRL
Sbjct: 1364 FYTDASKSD-TVGAAYVTNDTQQAFRL 1389
>gi|358376686|dbj|GAA93218.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 640
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 70/177 (39%), Gaps = 34/177 (19%)
Query: 116 ILCFTDGSKTEN---STSCAYTINKNVNSFRLNVVNS-----VFSAELMAILLCLQNLKY 167
I F+D S EN + + A N+ + R + S V++AELM I + L +
Sbjct: 339 ITVFSDASGKENQLGAAAVALDHNQQIMGSRQISIGSMEYWSVYAAELMTIYYAI-GLVF 397
Query: 168 LPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGN 227
+ K T + + I S +L A G + W P HCG GN
Sbjct: 398 QLAQKHATTTATQGP--------------ATILSDTAELKARGIPLRLQWVPGHCGDPGN 443
Query: 228 EAVD------VAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLK 278
E D V A+N P F L S K I+ +++ W+ W + NG L+
Sbjct: 444 ETADRLAKETVGAENKHP-FQHL----LSREKAFIRNKIKKEWEQEWKTSKNGGHLR 495
>gi|328720146|ref|XP_003246964.1| PREDICTED: hypothetical protein LOC100568990, partial
[Acyrthosiphon pisum]
Length = 164
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 210 GKEISFMWCPSHCGISGNEAVDVAAKNP--SPSFPPLKLCSASDYKPLIKKIVQRNWQSS 267
G +I +MW P HCGI GNE D+ A SP P L + + D K IK+++ + W
Sbjct: 2 GMDICYMWAPGHCGIQGNEKADLEASKAASSPDTPLLNIYTYEDKKKQIKQVLDQKWLIQ 61
Query: 268 W 268
W
Sbjct: 62 W 62
>gi|154272339|ref|XP_001537022.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409009|gb|EDN04465.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 510
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Query: 116 ILCFTDGSKTENSTSCAYTINKNVNSFRLNVVN-----SVFSAELMAILLCLQNLKYLPS 170
+ +TDGS A + ++++ L + +V++AEL+ I + L +
Sbjct: 196 LAVYTDGSGIHGKVGAA-ALAPSIHTQELAYLGKETSTTVYAAELLGIHMGLNLILASDR 254
Query: 171 TKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
+ + TD+ ++L+A+ + +S ++L +I + A G ++ F W P+H GI GNE
Sbjct: 255 RRAAIFTDNQAALKALQNPRRSSGQSILRRIIDALDRVRAQGLQVEFYWIPAHQGIEGNE 314
Query: 229 AVDVAAKNPS 238
D AK +
Sbjct: 315 LADNLAKEAT 324
>gi|326483666|gb|EGE07676.1| hypothetical protein TEQG_08765 [Trichophyton equinum CBS 127.97]
Length = 405
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 87/218 (39%), Gaps = 29/218 (13%)
Query: 73 IPPWSSVVPS-IDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSC 131
I PWS + S ID + K+ + L + K D I+ ++DGSK ++
Sbjct: 53 IKPWSQSLESLIDFKISQSSKEIAKKE--HIDLLKEV-LKNKDSIIYYSDGSKLDSGYLG 109
Query: 132 AYTINKNVNSFR---LNVVNSVFSAELMAI----LLCLQNLK-----------YLPSTKF 173
A N +S+R L VF AEL AI + L+ +K Y +F
Sbjct: 110 AGIYNFRTSSYRSWGLGTDLEVFDAELFAIEQAFIKGLKAIKKSSSLINPLFIYSSKKEF 169
Query: 174 LLVTDSMSSLQAITSKSCNNA--LLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ DS +++Q + +S+I +L +I +W P+H I GNE D
Sbjct: 170 WVFIDSQAAIQRLQKSYLEGGEMYVSRIRRIAKELKDRDYQIKIVWVPAHQNILGNEKAD 229
Query: 232 VAAK-----NPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
AAK S K S + K IK+I W
Sbjct: 230 FAAKLGARSRDSRDILKNKYTSLATIKRRIKEIALEEW 267
>gi|242825397|ref|XP_002488432.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712250|gb|EED11676.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 733
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 15/154 (9%)
Query: 117 LCFTDGSKTENSTSCAYTINKNVNSFRLNVV-------NSVFSAELMAILLCLQ-NLKYL 168
+ ++DGS+ + + A + V V + VF AELM + L+ L+
Sbjct: 481 MVWSDGSRLDTGRAGAGVALQAVPGGPWEHVEVPMGHGHEVFDAELMGVATALEWALERQ 540
Query: 169 PSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226
P ++ D+ +++ + S AL+ + + L G+ ++ W P H G+ G
Sbjct: 541 PLGPIWILLDAQNAIDRLKSARPGPGQALVLRAHRAVEKLAMRGQPVTIQWVPGHSGVVG 600
Query: 227 NEAVDVAAKNP-----SPSFPPLKLCSASDYKPL 255
NE D AAK +P F L L YK L
Sbjct: 601 NEQADQAAKRAASKQTAPGFEHLSLADGRVYKML 634
>gi|154276646|ref|XP_001539168.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414241|gb|EDN09606.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1913
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 14/144 (9%)
Query: 148 NSVFSAELMAILLCLQNLKYLPST-----KFLLVTDSMSSLQAITS--KSCNNALLSKIY 200
++V+SAEL ++L LQ + + +T K + TD+ +++QA+ + S +L +
Sbjct: 1646 STVYSAELKGLVLALQMVIDIHATGTAPGKCAIFTDNQAAVQAVRNPKHSSGQYILVEAI 1705
Query: 201 STWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK-------NPSPSFPPLKLCSASDYK 253
L G E+ F W P+H G+ GNE D AK N P L + K
Sbjct: 1706 QVLDRLRDLGWEVQFHWIPAHVGVPGNEEADRLAKRAADPTLNTEQPEPDLIRTLLASTK 1765
Query: 254 PLIKKIVQRNWQSSWNSVPNGNKL 277
I++ ++ W++SW +G L
Sbjct: 1766 STIRQAMKGEWETSWEKGKHGRDL 1789
>gi|154272351|ref|XP_001537028.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409015|gb|EDN04471.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1753
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 28/210 (13%)
Query: 96 SPSVFQVQFLVNINTKYHDRI-----LCFTDGSKTENSTSCAYTIN---------KNVNS 141
+P + ++ N K HD + +TDGS A K
Sbjct: 1420 TPPLICIKDSANDAIKEHDTMEPTTMRIYTDGSSINGHVGAAAVAPSLQDNGICMKRTQY 1479
Query: 142 FRLNVVNSVFSAELMAILLCLQNLKYLPST-----KFLLVTDSMSSLQAITS--KSCNNA 194
++ ++V+SAEL ++L LQ + + +T K + TD+ +++QA+ + S
Sbjct: 1480 MGVSSTSTVYSAELKGLVLALQMVIDIHATGTAPGKCAIFTDNQAAVQAVRNPKNSSGQY 1539
Query: 195 LLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK-------NPSPSFPPLKLC 247
+L + L G E+ F W P+H G+ GNE D AK N P L
Sbjct: 1540 ILVEAIQVLDRLRDLGWEVQFHWIPAHVGVPGNEEADRLAKRAADPALNTEQPEPDLIRT 1599
Query: 248 SASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
+ K I++ ++ W++SW +G L
Sbjct: 1600 LLATTKSTIRQAMKGEWETSWEKGKHGRDL 1629
>gi|407915369|gb|EKG09000.1| hypothetical protein MPH_14030 [Macrophomina phaseolina MS6]
Length = 606
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 13/143 (9%)
Query: 148 NSVFSAELMAILLCLQNLKYLPS---TKFLLVTDSMSSLQAITS--KSCNNALLSKIYST 202
+VF+AEL I++ L+ + K + TD+ ++L+A+ + + LLS I +
Sbjct: 334 TTVFAAELQGIIMALELAGVETAHGKQKIAIFTDNQAALRALVTPGQQSGQCLLSCIITE 393
Query: 203 WLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPL--------KLCSASDYKP 254
L G + F W P+H G+ GNE D AK + L + + K
Sbjct: 394 LTGLQQKGVSVDFHWIPAHQGVPGNEEADRLAKVVAREGRALEHRTQLNTRTSLVAALKQ 453
Query: 255 LIKKIVQRNWQSSWNSVPNGNKL 277
I + V W+ +W G +L
Sbjct: 454 AINQAVMDEWKQTWRDNERGRQL 476
>gi|326475951|gb|EGD99960.1| hypothetical protein TESG_08624 [Trichophyton tonsurans CBS 112818]
Length = 1605
Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 169 PSTK--FLLVTDSMSSLQAITSKSCNNA--LLSKIYSTWLDLVACGKEISFMWCPSHCGI 224
P TK +++DS S LQ +T++ + ++ I + DL A G I W PSHC
Sbjct: 1359 PKTKRTVTILSDSKSGLQTLTNQRNGSGQHIVRAIAKSARDLKAHGVSIRLQWIPSHCNN 1418
Query: 225 SGNEAVDVAAKNP---SPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLK 278
GN+ D AK PS P L S K I+ V W S W S G L+
Sbjct: 1419 PGNDTADRLAKEAVGTQPSHPFQNLLSRE--KAFIRDRVLAEWDSEWKSSSKGAHLR 1473
>gi|238508578|ref|XP_002385478.1| reverse transcriptase, putative [Aspergillus flavus NRRL3357]
gi|220688370|gb|EED44723.1| reverse transcriptase, putative [Aspergillus flavus NRRL3357]
Length = 1312
Score = 53.9 bits (128), Expect = 8e-05, Method: Composition-based stats.
Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 32/217 (14%)
Query: 66 FAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGS-- 123
AP++ PP ++V+ S + +L + Q+ + I +TDGS
Sbjct: 981 LAPWE---PPMTTVIDSHEAAL-----------FYHRQYCAR-----REGIAVYTDGSGL 1021
Query: 124 --KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLK--YLPSTKFLLVTDS 179
+ ST C K + ++V++ EL I + L L+ P+T F+ DS
Sbjct: 1022 NGRIGASTVCLSQGWKRNRTLGTEEESTVYAGELTGIRMALHRLRKETRPATVFV---DS 1078
Query: 180 MSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP 237
+++QA+ + + +L +IY G+ + W P+H G+ GNEA D AA+
Sbjct: 1079 EAAIQAVQNPRRPSGQYILDQIYYIVRRYNMQGR-VQIRWIPAHIGVPGNEAADEAAREG 1137
Query: 238 SPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNG 274
+ +C A+ K I++ ++ W W + G
Sbjct: 1138 TQKAGE-AICLAAAAKRQIRRRIKDRWTREWKAEKTG 1173
>gi|71024129|ref|XP_762294.1| hypothetical protein UM06147.1 [Ustilago maydis 521]
gi|46101799|gb|EAK87032.1| hypothetical protein UM06147.1 [Ustilago maydis 521]
Length = 345
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 11/135 (8%)
Query: 148 NSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLV 207
++V+ AEL+AI L++ + + + D+ +++ I ++ ++ +S I +
Sbjct: 93 STVYRAELLAIRKALEH--GIANAGATIFCDNRAAVIHIDARPSDDPDISAIQQ-----M 145
Query: 208 ACGKEISFMWCPSHCGISGNEAVDVAAKNPSP---SFPPLKLCSASDYKPLIKKIVQRNW 264
+ G+ ++ +W P H I GNE D A+ + FP A+ L+++ +Q W
Sbjct: 146 SSGRRVTVVWIPGHRDIPGNERADTLAQGAADDAIGFPADYREEAAVRHALLRRTMQ-AW 204
Query: 265 QSSWNSVPNGNKLKT 279
+W S P G++LK
Sbjct: 205 TKAWESTPRGSELKA 219
>gi|242826135|ref|XP_002488580.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712398|gb|EED11824.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1154
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 149 SVFSAELMAIL--------LCLQNLKYLPSTK--FLLVTDSMSSLQAITS--KSCNNALL 196
SV++AELMAI + L+N S + +++DSMS+LQAI++ ++
Sbjct: 883 SVYTAELMAIYYAISLVLKIALENWDTTASQQEPATILSDSMSALQAISNARNKSGQRII 942
Query: 197 SKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP---SPSFPPLKLCSASDYK 253
+ + +L A G + W P H GNEA D AK P L S K
Sbjct: 943 QAVRQSARELKARGIPLRLQWVPGHYSDLGNEAADRLAKEAVGLDKEHPFQHLLSRE--K 1000
Query: 254 PLIKKIVQRNWQSSWNSVPNGNKL 277
I+ +Q W+ W + NG L
Sbjct: 1001 GFIRNRIQEEWERGWKTSKNGGHL 1024
>gi|427783467|gb|JAA57185.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 628
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 111 KYHDRI----LCFTDGSKTENSTSCAY-----TINKNVNSFRLNVVNSVFSAELMAILLC 161
K HDR+ L FTDGS ++ S A T + S RL S +AEL + L
Sbjct: 343 KLHDRLRGHLLVFTDGSVRDSPRSAAAACVIPTTGTTIRS-RLPFHASSTAAELAGLHLA 401
Query: 162 LQNLKYL-PSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPS 220
L P ++ DS +LQA+ ++ +++ + A G +S W PS
Sbjct: 402 ADYLAATTPQLPVAILCDSRPALQALLQPDQAGITVALLHAKLTAIRASGVRLSLHWLPS 461
Query: 221 HCGISGNE 228
H GI+GNE
Sbjct: 462 HVGIAGNE 469
>gi|407920660|gb|EKG13846.1| hypothetical protein MPH_08978 [Macrophomina phaseolina MS6]
Length = 606
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 17/184 (9%)
Query: 111 KYHDRILCFTDGSKTEN---STSCAYTIN-KNVNSFRLNVVNSVFSAELMAILLCLQNLK 166
K + + +TDGS + + A TIN ++ N +VF+AEL I + L +
Sbjct: 293 KDRETVAIYTDGSALDGHVGGAATAPTINARHTNYMGTIKSTTVFAAELRGIEMALDLAE 352
Query: 167 YLP---STKFLLVTDSMSSLQAIT--SKSCNNALLSKIYSTWLDLVACGKEISFMWCPSH 221
+ + TD+ ++L+A+ S+ LL I + + L G I F W PSH
Sbjct: 353 AEAAHRKRRIAVFTDNQAALRALVTPSEQSGQYLLRSIIAKLIGLQQQGVLIEFHWVPSH 412
Query: 222 CGISGNEAVD----VAAKNPSPSFPPLKLCSASDYKPLIKKIVQR----NWQSSWNSVPN 273
G+ GNE D AA S +L + + +K+ + + W+ W
Sbjct: 413 QGVPGNEEADRLAKAAALEGRASEHGTQLHARTSLVAALKQTISQAEMDEWKQLWKDGER 472
Query: 274 GNKL 277
G +L
Sbjct: 473 GRQL 476
>gi|156540059|ref|XP_001599613.1| PREDICTED: hypothetical protein LOC100114674, partial [Nasonia
vitripennis]
Length = 721
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 18/210 (8%)
Query: 46 PLLMRAREITDFIANIDSSEFAPYDKHIPPWSSVVPSID----TSLHSGKKDNVSPSVFQ 101
P + E+ D + + + A +D ++ P ID L G ++ V P V
Sbjct: 121 PGFRLSHEMGDENSGRNRQQRAAWDL-----AAKAPGIDGIYLAFLQEGLEELVGPLVKL 175
Query: 102 VQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNV--NSFRLNVVNSVFSAELMAIL 159
+ V + H + DGS+ E T Y ++ F L +VF E+ AIL
Sbjct: 176 FRASVAL-AHVHCNMGNGQDGSRAETGTGSGYYSQRDGWGTFFSLGRYATVFQTEINAIL 234
Query: 160 LCLQ-NLKYLPSTKFLLV-TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMW 217
C Q N++ + + + +DS ++L+A+ + + L+ + L A ++ +
Sbjct: 235 TCAQRNIELGARDRIITICSDSQAALRALMAHRTTSRLVWECKVVVNQLTAHNNKVRLLC 294
Query: 218 CPSHCGISGNEAVD----VAAKNPSPSFPP 243
P H GI GNE D + AK+PS P
Sbjct: 295 VPGHTGIRGNEIADRLAALGAKHPSIGPEP 324
>gi|317156327|ref|XP_001825633.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1393
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 32/190 (16%)
Query: 116 ILCFTDGSKTENSTSCAYTI---NKNV-NSFRLNVVN----SVFSAELM----AILLCLQ 163
++ F+D S N A I NK+V S +L++ + SV++AEL+ AI L L+
Sbjct: 1075 MVVFSDASGQNNQLGAATVILDHNKDVVESRQLSIGSMANWSVYAAELIGIFYAISLVLK 1134
Query: 164 NLKYLPSTKFL-------LVTDSMSSLQAITS---KSCNNALLSKIYSTWLDLVACGKEI 213
+ P T ++ DSMS+LQAI + KS + + + + +L A G +
Sbjct: 1135 IVSSRPRTPTTSQQEPATILCDSMSALQAIRNPGNKSGQRIIHANLQAA-AELKARGIPL 1193
Query: 214 SFMWCPSHCGISGNEAVDVAAK-----NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSW 268
W P HC GN+A D A+ + FP L S + I+K + + W+ W
Sbjct: 1194 RLQWIPGHCDDPGNDAADKLARMAVGLDKMHPFPRL----VSQERASIRKQILKEWEHEW 1249
Query: 269 NSVPNGNKLK 278
+ G+ L+
Sbjct: 1250 KTCKKGSHLR 1259
>gi|343471757|emb|CCD15897.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 661
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 32/233 (13%)
Query: 73 IPPWS---------SVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGS 123
+PPWS + D SL KD + S + L I H + L TDG
Sbjct: 269 VPPWSVSQANKVTFGLTVEYDKSL--THKDAIR-SAKKWASLHEIGKHNHFQWLIATDGG 325
Query: 124 KTENSTSCAYTINKNVN--------SFRLNVVNSVFSAELMAILLCLQNLKYLPSTK--- 172
++ + K+V+ S V+S + AE +A+LL L L +P T
Sbjct: 326 IQSPMSAGVGLLFKSVSHPVLIKQVSVNCGSVSSSYRAESVAMLLALDRL-VMPMTDVKH 384
Query: 173 --FLLVTDSMSSLQAITSKSCNNALLSK--IYSTWLDLVACGKEISFMWCPSHCGISGNE 228
L+VTDS S L A++ + ++ I++ ++L G I F +C SHCG+ NE
Sbjct: 385 KTLLIVTDSQSLLNALSKGPLSQCDYTEDVIWTRLIELTLHGWLIHFQFCHSHCGVVVNE 444
Query: 229 AVDVAA----KNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
D A +N + P +K D + LI + +++ W +S + + KL
Sbjct: 445 MADEYATQCMENGHFTEPSVKPLWHKDLEALITRQLKKRWLASLRTDTHRYKL 497
>gi|83774376|dbj|BAE64500.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1292
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 54/190 (28%), Positives = 88/190 (46%), Gaps = 32/190 (16%)
Query: 116 ILCFTDGSKTENSTSCAYTI---NKNV-NSFRLNVVN----SVFSAELM----AILLCLQ 163
++ F+D S N A I NK+V S +L++ + SV++AEL+ AI L L+
Sbjct: 974 MVVFSDASGQNNQLGAATVILDHNKDVVESRQLSIGSMANWSVYAAELIGIFYAISLVLK 1033
Query: 164 NLKYLPSTKFL-------LVTDSMSSLQAITS---KSCNNALLSKIYSTWLDLVACGKEI 213
+ P T ++ DSMS+LQAI + KS + + + + +L A G +
Sbjct: 1034 IVSSRPRTPTTSQQEPATILCDSMSALQAIRNPGNKSGQRIIHANLQAA-AELKARGIPL 1092
Query: 214 SFMWCPSHCGISGNEAVDVAAK-----NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSW 268
W P HC GN+A D A+ + FP L S + I+K + + W+ W
Sbjct: 1093 RLQWIPGHCDDPGNDAADKLARMAVGLDKMHPFPRL----VSQERASIRKQILKEWEHEW 1148
Query: 269 NSVPNGNKLK 278
+ G+ L+
Sbjct: 1149 KTCKKGSHLR 1158
>gi|154270037|ref|XP_001535890.1| hypothetical protein HCAG_09166 [Ajellomyces capsulatus NAm1]
gi|150413780|gb|EDN09159.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 331
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDL 206
+V++AEL+ IL+ L + + + TD+ ++L+A+ + +S ++L +I +
Sbjct: 54 TVYAAELLGILMGLNLILTSDRRRAAIFTDNQAALRALQNPRRSSGQSILRRIIDALERV 113
Query: 207 VACGKEISFMWCPSHCGISGNEAVDVAA 234
+ G ++ F W P+H GI GNE D A
Sbjct: 114 RSQGLQVEFYWIPAHQGIEGNELADKLA 141
>gi|383859911|ref|XP_003705435.1| PREDICTED: armadillo repeat-containing protein 4-like [Megachile
rotundata]
Length = 999
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 83/178 (46%), Gaps = 23/178 (12%)
Query: 104 FLVNINTKYHDRILCFTDGSKTEN----STSCAYTINKNVNSFRLNVVNSVFSAELMAIL 159
F +N Y I FTD SK E S SC + + LN + +FSAE IL
Sbjct: 712 FQSAVNDLYPGYIQIFTDDSKMEGTVSTSASCVCPLLDCSFTRSLNHASLIFSAECHGIL 771
Query: 160 LCLQNLKYLPSTKFLLVTDSMSSLQAITSKS-CNNA--LLSKI---YSTWLDLVACGKEI 213
+ + NL F S L+A+ + C + LL +I + + L + G+ I
Sbjct: 772 MAV-NLANKAKNSF-------SVLEALDGRVFCQRSFSLLKEIKEELNAFETLASPGRRI 823
Query: 214 SFMWCPSHCGISGNEAVDVAAK---NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSW 268
+F+W PS+ GI NE D AAK N S F K+ +D+ P++K I+ +N S W
Sbjct: 824 AFVWIPSYRGILNNERADAAAKLASNISGEF-NFKV-PYTDFSPILKDIMWKNSISRW 879
>gi|357621647|gb|EHJ73416.1| putative pol-like protein [Danaus plexippus]
Length = 1133
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 98 SVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTI----NKNVNSFRLNVVNSVFSA 153
++ VQF + + D + +TD SK + ++ + + +F+ S+F+A
Sbjct: 843 AIANVQFQNYVKEHWSDWLCIYTDASKMADQSNAGAAVWIPKYNIILNFKFPSEISIFTA 902
Query: 154 ELMAILLCLQNLKYLPSTKF---LLVTDSMSSLQAITS----KSCNNALLSKIYSTWLDL 206
E +AIL + + ++ S K ++ +DS S LQAI N + KI
Sbjct: 903 ESIAIL---EAVSFVESHKLNNSIIFSDSKSCLQAIARNPFISKHNYPYILKIKDILFRC 959
Query: 207 VACGKEISFMWCPSHCGISGNEAVDVAAKN 236
+ ++ W PSH GI GNE VD AK+
Sbjct: 960 QSSNIQVRLAWIPSHSGIHGNETVDYYAKD 989
>gi|427791847|gb|JAA61375.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 928
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 6/155 (3%)
Query: 115 RILCFTDGSKTENSTSCAYTINKNV---NSFRLNVVNSVFSAELMAILLCLQNLKYLPS- 170
R FTD S ++ ++ A + RL S +AEL+ I L ++ P
Sbjct: 699 RTQFFTDASVLQDHSAAAACTAPQLALKRQCRLVYRASSTTAELVGIHLAADLIRESPQV 758
Query: 171 TKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAV 230
++ + TDS S+L+ + + L ++ + L G +++ W PSH GI+GNEA
Sbjct: 759 SRAAIFTDSRSALRQLAKEDRAPPLAERVAWSLHSLREYGCDVALQWIPSHVGIAGNEAA 818
Query: 231 DVAAKNPSPSFPPLKLC--SASDYKPLIKKIVQRN 263
D AK PL C SA + +++ + RN
Sbjct: 819 DDLAKAAHDPAVPLTTCADSADSARQNLRREIVRN 853
>gi|357611795|gb|EHJ67653.1| non-LTR retrotransposon CATS [Danaus plexippus]
Length = 387
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 75/163 (46%), Gaps = 27/163 (16%)
Query: 119 FTDGSKTENSTSCAYTINKNV----NSFRLNVVNSVFSAELMAILLCLQNLK--YLPSTK 172
FTDGSK E+ T A ++ + S V F AEL+AIL NL LP+
Sbjct: 120 FTDGSKLEDGTVGAAFVSYDTIPSVKSSSSTTVVLFFQAELLAIL----NLANGSLPTN- 174
Query: 173 FLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDV 232
+++ AI +S + L+ KI+ST + I F W +H GI GNEA +
Sbjct: 175 ----IHPRAAILAIQKRSNTHHLVPKIHST---VHHSSGSIEFAWVKAHVGIVGNEAANT 227
Query: 233 AAKNPSPSFPPLKLCSASDYKPLIKKIVQ---RNWQSSWNSVP 272
AAK + KL ASDY ++ R QS ++S P
Sbjct: 228 AAKREA------KLHKASDYTQFPITFIKHSTRVLQSRYDSEP 264
>gi|242821354|ref|XP_002487663.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712584|gb|EED12009.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 282
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 25/171 (14%)
Query: 116 ILCFTDGSKTENS-TSCAYTINKNVNSFRLNVVN-------SVFSAELMAILLCLQ-NLK 166
I F+D S N + A +++N N + V+ SV++A+LMAI + LK
Sbjct: 114 IAVFSDASGQHNHLGAAAVALDRNNNVIQQRKVSIGSMEYWSVYAAKLMAIYYAISLVLK 173
Query: 167 YLPSTK---------FLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISF 215
T+ +++DSMS LQA+++ ++ + + +L G +
Sbjct: 174 IAMETRQAMTDRQEPATILSDSMSVLQALSNARNKLGQRIIQAVQQSVQELQTQGIPLRL 233
Query: 216 MWCPSHCGISGNEAVDVAAK---NPSPSFPPLKLCSASDYKPLIKKIVQRN 263
W P HCG GNEA D AK P P L S K I+ +Q+
Sbjct: 234 QWVPGHCGDLGNEAADRLAKEAMGPEKEHPFQHLLSRE--KGFIRNRIQKE 282
>gi|242765583|ref|XP_002341004.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218724200|gb|EED23617.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 361
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 15/150 (10%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVV-------NSVFSAELMAILLCLQ-NLKYLPS 170
++DGS+ + + A + V V + F AELM + L+ L+ P
Sbjct: 62 WSDGSRLDTGRAGAGVALQAVPGGPWEHVEVPMGHGHEAFDAELMGVATALEWALERQPL 121
Query: 171 TKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
++ D+ +++ + S AL+ + + L G+ ++ W P H G+ GNE
Sbjct: 122 GPIWVLLDAQNAIDRLKSARPGPGQALVLRAHRAVEKLAMRGQPVTIQWVPGHSGVVGNE 181
Query: 229 AVDVAAKNP-----SPSFPPLKLCSASDYK 253
D AAK +P F L L YK
Sbjct: 182 QADQAAKRAASKQTAPGFEHLSLADGRVYK 211
>gi|255931687|ref|XP_002557400.1| Pc12g05560 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582019|emb|CAP80183.1| Pc12g05560 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 334
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 25/187 (13%)
Query: 116 ILCFTDGSKTENS-TSCAYTINKNVN---SFRLNVVN----SVFSAELMAILLCLQNLKY 167
++ ++D S + A T++ N+ S ++ V + SV +AEL+ IL ++ +
Sbjct: 12 VVVYSDASGRHGHLGAAAVTLDNNLEVAESVQIQVGSMDRWSVHAAELIGILHAIEIVNK 71
Query: 168 LPSTKFLL----------VTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISF 215
+ S + L ++DSMS+LQAI + ++ I ++ G I
Sbjct: 72 VASERRRLHGEQVRLATILSDSMSALQAIQTPGNKSGQRIIHAILQAAINSKTHGVTIRL 131
Query: 216 MWCPSHCGISGNEAVDVAAKN---PSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVP 272
W P HC GN++ D AK P + P L S K ++K + W+
Sbjct: 132 QWIPGHCAAPGNDSADRLAKEAAIPGKTHPFCPLLSRE--KAFVRKNIYDQWEKEXKESK 189
Query: 273 NGNKLKT 279
G L+T
Sbjct: 190 EGGNLRT 196
>gi|255940992|ref|XP_002561265.1| Pc16g09510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585888|emb|CAP93621.1| Pc16g09510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1249
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 17/146 (11%)
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLL----------VTDSMSSLQAITS--KSCNNALL 196
SV +AEL+ IL ++ + + S + L ++ SMS+LQAI + ++
Sbjct: 968 SVHAAELIGILHAIEIINKVASERRRLHAEQVRLATILSGSMSALQAIQTPGNKSGQRII 1027
Query: 197 SKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN---PSPSFPPLKLCSASDYK 253
I ++ G I W P HC GN++ D AK P + P L S K
Sbjct: 1028 HAILEAAINTKTHGVTIRLQWIPGHCAAPGNDSADRLAKEAAIPGKTHPFCPLLSRE--K 1085
Query: 254 PLIKKIVQRNWQSSWNSVPNGNKLKT 279
++K + W+ W G L+T
Sbjct: 1086 AFVRKNIYVQWEKEWKESREGGNLRT 1111
>gi|242768198|ref|XP_002341520.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218724716|gb|EED24133.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 200
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 174 LLVTDSMSSLQAI-TSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDV 232
++ DS +++QAI ++ +L I W +L G ++S W P+H GI GNE D
Sbjct: 15 IIFCDSQAAIQAIDGTQKTGQQILGSIAEKWDELRNQGVQVSIHWIPTHQGIEGNERADR 74
Query: 233 AAKNPSPSF--------PPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
AAK + PL S K +K + + W+ W G L
Sbjct: 75 AAKEATGWRLIRNIGLQQPL-----SALKRDLKTLAYKQWEQEWQRNQQGRTL 122
>gi|261336121|dbj|BAI44754.1| pol-like protein [Alternaria alternata]
Length = 1186
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 49/185 (26%), Positives = 77/185 (41%), Gaps = 24/185 (12%)
Query: 119 FTDGSKTENSTSCAYT--INKNVNSFRL--NVVNSVFSAELMAILLCLQNLKYLPS---- 170
+TDGS E A + K S + + +++V++AEL I L L K
Sbjct: 988 YTDGSGIEGEIGSAAVCPLTKQTRSVHMGSDTLSTVYAAELQGISLALHIAKEYADGDGE 1047
Query: 171 -TKFLLVTDSMSSLQAITSKSCNNA--LLSKIYSTWLDLVACGKEISFMWCPSHCGISGN 227
+ TD+ + + +I + +L+ I +L G ++ W P+H GI GN
Sbjct: 1048 RKDIAVYTDNQAVIWSIAKAEGRSGAYILAGIAQQVQELQNKGLSVTVRWIPAHVGIEGN 1107
Query: 228 EAVDVAAKNPS----------PSFPPLKLCS-ASDYKPLIKKIVQRNWQSSWNSVPNGNK 276
EA D AAK + P+ PP +L + + K +R W S+W G
Sbjct: 1108 EAADQAAKEATGWREDGRRQQPAEPPPQLYPLRTTLRRWCKTQAERQWISAWREDKKGR- 1166
Query: 277 LKTYR 281
TYR
Sbjct: 1167 -TTYR 1170
>gi|358376801|dbj|GAA93312.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 316
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 64/153 (41%), Gaps = 31/153 (20%)
Query: 152 SAELMAIL----LCLQ---------NLKYLPSTKFLLVTDSMSSLQAIT--SKSCNNALL 196
+ ELMAI L LQ + P+T +++DSMS+LQAI + ++
Sbjct: 65 AGELMAIFYAISLVLQVTTKRQGRLDRGKQPAT---ILSDSMSALQAIRNPANKSGQRII 121
Query: 197 SKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPL- 255
I +++A G I W P HC GN+ D AK + P K+ +KPL
Sbjct: 122 RAILQAASEMIARGIPIRLHWVPGHCNDPGNDEPDRLAKE---AVGPRKMHP---FKPLL 175
Query: 256 ------IKKIVQRNWQSSWNSVPNGNKLKTYRK 282
I+K V W+ W G L+ K
Sbjct: 176 SRENGFIRKRVLNEWKEEWAKSTKGGHLRQIDK 208
>gi|317157858|ref|XP_001826621.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1012
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 116 ILCFTDGS----KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLK--YLP 169
I +TDGS + ST C K + ++V++ EL I + L L+ P
Sbjct: 717 IAVYTDGSGLNGRVGASTVCLSQGWKRNCTLGTEEESTVYAGELTGIRMALHRLRRETRP 776
Query: 170 STKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGN 227
+T F+ DS +++QAI + + +L +IY + + W P+H G+ GN
Sbjct: 777 ATVFV---DSQAAIQAIQNPRRPSGQYILDQIYYI-IRRYNMQNRVQIHWIPAHIGVPGN 832
Query: 228 EAVDVAAKNPSPSFPPLK----LCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTYR 281
EA D AA+ + + +C A+ K I++ ++ W W + G TYR
Sbjct: 833 EAADEAAREGATREGTQQTGEAICLAAAAKRQIRRSIKDRWIREWKTEKTGP--TTYR 888
>gi|343414726|emb|CCD20908.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 1443
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 35/242 (14%)
Query: 23 RNPIHNEFFNRNYDFANHPNTPKPLLMRAREITDFIANIDSSEFAPYDKHIPPWSSVV-- 80
R P+H + + + P P P+ +R ++ + IDS E P++ W+ V
Sbjct: 578 RGPVHAKVADSIF-----PPEP-PIHVRLAKVQRLYSTIDSPE-KPHEATALQWARCVHF 630
Query: 81 -PSIDTSLHSG--KKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINK 137
++ +L +G +KD ++ +VQ + + + +TDGS +++S A +
Sbjct: 631 NATMPGALKAGAPEKDKKVHTMRRVQRFSDFDYQ------VWTDGSVVLDASSGAGALVY 684
Query: 138 NVNSFRLNVVNSV------FSAELMAI------LLCLQNLKYLPSTKFLLVTDSMSSLQA 185
+ R VV + AE +A+ L+ + L T+ + TDSMS L A
Sbjct: 685 PKDGRREEVVLGTGSLARSYRAECVAMEAGLKRLVDVIQLSKTHRTRVVAFTDSMSLLMA 744
Query: 186 ITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK--NPSP-S 240
+ + +A+L +I+ L +V ++F + SHCG+ NEA D AA+ N P S
Sbjct: 745 LNTCHAGVEDAILRRIWDLILHIVRLRVSVNFQFVFSHCGVPPNEAADKAAEQGNAKPQS 804
Query: 241 FP 242
+P
Sbjct: 805 YP 806
>gi|83775366|dbj|BAE65488.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1187
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 116 ILCFTDGS----KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLK--YLP 169
I +TDGS + ST C K + ++V++ EL I + L L+ P
Sbjct: 892 IAVYTDGSGLNGRVGASTVCLSQGWKRNCTLGTEEESTVYAGELTGIRMALHRLRRETRP 951
Query: 170 STKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGN 227
+T F+ DS +++QAI + + +L +IY + + W P+H G+ GN
Sbjct: 952 ATVFV---DSQAAIQAIQNPRRPSGQYILDQIYYI-IRRYNMQNRVQIHWIPAHIGVPGN 1007
Query: 228 EAVDVAAKNPSPSFPPLK----LCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTYR 281
EA D AA+ + + +C A+ K I++ ++ W W + G TYR
Sbjct: 1008 EAADEAAREGATREGTQQTGEAICLAAAAKRQIRRSIKDRWIREWKTEKTGP--TTYR 1063
>gi|353245589|emb|CCA76508.1| hypothetical protein PIIN_10501 [Piriformospora indica DSM 11827]
Length = 348
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 70/180 (38%), Gaps = 28/180 (15%)
Query: 116 ILCFTDGSKTENSTSCA---YTINKNVNSFR----LNVVNSVFSAELMAILLCLQNLKYL 168
+ +TDGS E A Y + V + R ++V EL+ I L + + +
Sbjct: 40 VAIYTDGSGMEGKIGAAAVLYRNGRRVKAVRYLLGAETEHTVHEGELVGIALGIHLARTM 99
Query: 169 PS--TKFLLVTDSMSSLQAITSKSCNNA------LLSKIYSTWLDLVACGKEISFMWCPS 220
K + D+ +++Q+IT N +LS+I D + F W P
Sbjct: 100 QGNRAKVNISLDNQAAIQSITRARPNAGQHVVENILSEIEDELSDYRRL--RMEFTWVPG 157
Query: 221 HCGISGNEAVDVAAKNP------SPSFPPLKL-----CSASDYKPLIKKIVQRNWQSSWN 269
H GI GNEA D AK PS P L + S K K++ + + WN
Sbjct: 158 HEGIQGNEAADEEAKKAITEGASRPSEHPRWLREPLPSNLSAVKQECKRLAKEGARERWN 217
>gi|261336140|dbj|BAI44772.1| pol-like protein [Alternaria alternata]
Length = 1295
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 24/190 (12%)
Query: 114 DRILCFTDGSKTE----NSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLP 169
D + +TDGS E ++ C T + ++V++AEL I L LQ +
Sbjct: 980 DSLSIYTDGSGIEGEIGSAALCPLTQQTRSVHMGSDTESTVYAAELQGISLALQIAQEYA 1039
Query: 170 STK-----FLLVTDSMSSLQAITSKSCNNA--LLSKIYSTWLDLVACGKEISFMWCPSHC 222
S + TD+ +++ +I + +L++I +L G+ ++ W P+H
Sbjct: 1040 SRNGARRDVAIYTDNQAAVWSIAKVEGRSGAYILAEIARQVRELQDNGRTVTVRWIPAHV 1099
Query: 223 GISGNEAVDVAAKNPS-----------PSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSV 271
GI GNEAVD AAK + PP S K +R W + W
Sbjct: 1100 GIPGNEAVDKAAKEATGWRENGRRSLPADAPPQLFTIRSTVKRWCSIQAERAWIAKWRKD 1159
Query: 272 PNGNKLKTYR 281
G TYR
Sbjct: 1160 TKGR--ATYR 1167
>gi|242765569|ref|XP_002341001.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218724197|gb|EED23614.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 805
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 12/137 (8%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ-NLKYLPSTKFLLVT 177
++DGS+ + + A ++V + + VF AELM + L+ L+ P +
Sbjct: 489 WSDGSRLDTGRAGA---GEHVE-VPMGHGHEVFDAELMGVATALEWALERQPLGPIWVFL 544
Query: 178 DSMSSLQAI--TSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK 235
D+ +++ + T AL+ + + L G+ ++ W P H GI GNE D AAK
Sbjct: 545 DAQNAIDRLRSTRPGPGQALVLRAHKAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAK 604
Query: 236 NP-----SPSFPPLKLC 247
+P F L L
Sbjct: 605 RAASKQTAPGFEHLSLA 621
>gi|170051969|ref|XP_001862008.1| predicted protein [Culex quinquefasciatus]
gi|167872964|gb|EDS36347.1| predicted protein [Culex quinquefasciatus]
Length = 333
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 19/180 (10%)
Query: 108 INTKYHDRILCFTDGSKTENSTSCAYTINKN----VNSFRLNVVNSVFSAELMAILLCLQ 163
I+ KY + I+ TDGSK E+ C Y + V +L SVF AEL+AI +Q
Sbjct: 42 ISQKYQNSIVFATDGSKDED--GCGYAVVDGSFQIVKQIKLPKTVSVFLAELLAIRQAVQ 99
Query: 164 NLKYLPSTKFLLVTDSMSSLQAITSKSCNNAL---LSKIYSTWLDLVACGKEISFMWCPS 220
++ P +FL+++DS+SSL ++ ++S + + + L GK +S MW P+
Sbjct: 100 HIAQHPGREFLILSDSLSSLSSLHNRSLQGTTPIPWFDVRNHIMQLEQAGKTVSLMWVPA 159
Query: 221 HCGISGNEAVDVAA----KNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNK 276
H ++ NEA D AA K P L S Y +K + Q WQ++W+ NG+K
Sbjct: 160 HRNVTLNEAADAAAKLACKEGEPETYQLNSWDIS-YPSRVKALHQ--WQNNWD---NGDK 213
>gi|331242858|ref|XP_003334074.1| hypothetical protein PGTG_15618 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 235
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 13/129 (10%)
Query: 123 SKTENSTSCAYTINKNVNSFRLNVVN--SVFSAELMAILLCLQNLK------YLPSTKFL 174
K ++S S A N + R+N + S F AE+ AI + L +K LPS+ +
Sbjct: 40 EKAKSSASAALLNNSISFACRINDADKASAFEAEVQAINIGLDIIKNEIQRNSLPSSNII 99
Query: 175 -LVTDSMSSLQAITS---KSCNNALLSKIYSTWLDLVACGK-EISFMWCPSHCGISGNEA 229
+ +D+ ++LQ I S N A+ +I+ L++ + IS +WCP+H GI NE
Sbjct: 100 NIFSDNQATLQVIAKPPRSSSNQAIFIQIFDKLNYLISVHQASISLLWCPAHVGIPENEK 159
Query: 230 VDVAAKNPS 238
VD AK +
Sbjct: 160 VDQLAKEAT 168
>gi|343417422|emb|CCD20043.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 387
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 31/220 (14%)
Query: 46 PLLMRAREITDFIANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSG------KKDNVSPSV 99
P+ +R ++ + IDS E P+D + W+ V + + G +KD ++
Sbjct: 138 PIHVRLAKVQHLYSVIDSPE-KPHDATVLQWARRV-HFNITTPGGLKADAPEKDKKEHTM 195
Query: 100 FQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSA 153
+VQ + + + +TDGS + +S A + R VV + A
Sbjct: 196 RRVQRFRDFDYQ------VWTDGSVVLDVSSGAGALVYPKEGRREKVVLGAGSLACSYRA 249
Query: 154 ELMAILLCLQNLKYLPS------TKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLD 205
E +A+ L+ L + T+ + TDS+S L A+ + + +A+L +I+ L
Sbjct: 250 ECVAMEAGLKRLVEVIELSKTHRTRVVAFTDSLSLLMALNTGPAAVEDAILRRIWDLILR 309
Query: 206 LVACGKEISFMWCPSHCGISGNEAVDVAAK--NPSP-SFP 242
+V ++F + SHCG+ NEA D AA+ N P S+P
Sbjct: 310 IVRLRVSVNFQFVFSHCGVPRNEAADKAAEQGNAKPQSYP 349
>gi|3776305|gb|AAC64711.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K K +VTDS +L I+S+ + S I ++ + ++
Sbjct: 477 AELMAVLLALQDSK----EKVNIVTDSQYALGIISSQPTQSE--SPIVQQIIEELTKKEQ 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 531 VYLTWVPAHKGIGGNEKID 549
>gi|358376777|dbj|GAA93294.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 255
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 31/146 (21%)
Query: 152 SAELMAIL----LCLQ---------NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALL 196
+AELMAI L LQ + P+T +++DSMS+LQAI ++ ++
Sbjct: 96 AAELMAIFYAISLVLQVTTKRQGRLDRGKQPAT---ILSDSMSALQAIRNSANKSGQRII 152
Query: 197 SKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPL- 255
I +++A G I W P HC GN+ D AK + P K+ +KPL
Sbjct: 153 RAILQAASEMIARGIPIRLHWVPGHCNDPGNDEPDRLAKE---AVGPRKM---HPFKPLL 206
Query: 256 ------IKKIVQRNWQSSWNSVPNGN 275
I+K V W+ W G
Sbjct: 207 SRENGFIRKRVLNEWKEEWAKSTKGG 232
>gi|242807803|ref|XP_002485032.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218715657|gb|EED15079.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 550
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 15/144 (10%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVV-------NSVFSAELMAILLCLQ-NLKYLPS 170
++DGS+ + + A + V V + VF AELM + L+ L+ P
Sbjct: 193 WSDGSRLDTGRAGAGVALQAVPGGPWEHVEVPMGHGHEVFDAELMGVATALEWALERQPL 252
Query: 171 TKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
++ D+ +++ + S AL+ + + L G+ ++ W P H G+ GNE
Sbjct: 253 GPIWVLLDAQNAIDRLKSARPGPGQALVLRAHRAVEKLAMRGQPVTIQWVPGHSGVVGNE 312
Query: 229 AVDVAAKNP-----SPSFPPLKLC 247
D AAK +P F L L
Sbjct: 313 QADQAAKRAASKQTAPGFEHLSLA 336
>gi|380484386|emb|CCF40032.1| zinc knuckle [Colletotrichum higginsianum]
Length = 445
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 22/181 (12%)
Query: 116 ILCFTDGSKTENSTSCA---YTINKNVNSFRL-NVVNSVFSAELMAILLCLQ-----NLK 166
I +TDGS A T + NS+ + +++V++ EL I+L L+ +
Sbjct: 138 IHIYTDGSGINGYIGAAAVCITTYQTRNSYMGSDAISTVYAGELQGIILALEIAEEDRQR 197
Query: 167 YLPSTKFLLVTDSMSSLQ--AITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGI 224
+K L+ TD+ ++++ A + LL I L G + W P+H GI
Sbjct: 198 GNNRSKVLIYTDNQAAIRSSARPKGKSGSYLLQTIAVKTQKLQEQGLKTEIRWVPAHTGI 257
Query: 225 SGNEAVDVAAKNPS-----------PSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPN 273
GNE D AAK + P S K + + WQ+ W +
Sbjct: 258 QGNEDADKAAKEATGWRQNGETGTKADMPQHLYALRSTLKTWTYREANKMWQAKWTAETR 317
Query: 274 G 274
G
Sbjct: 318 G 318
>gi|322712751|gb|EFZ04324.1| reverse transcriptase, putative [Metarhizium anisopliae ARSEF 23]
Length = 345
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 30/191 (15%)
Query: 116 ILCFTDGSK-----TENSTSCAYTIN----KNVNSFRLNVVNSVFSAELMAILLCLQ--- 163
I +TDGS+ E + S A I+ K + +++V+SAEL + L L+
Sbjct: 23 IRIYTDGSRIDGHVGEAAISPALQIDGVCAKRTECMGTSDISTVYSAELRGLALALKMAL 82
Query: 164 --NLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCP 219
+L + K + TD+ +++QA+ + +L++ +L G ++ F W P
Sbjct: 83 DVSLATHCAGKCTISTDNQAAIQAMRNLKHPSGQYILAEAIQALDELRGHGWDMQFRWIP 142
Query: 220 SHCGISGNE-------------AVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQS 266
+H G+ GNE A P P L+ A K I+K ++ W++
Sbjct: 143 AHVGVPGNEAADKAAKEAAGHNANSRQTAEPPPEPEHLRALMAP-AKSAIRKTMKAEWKA 201
Query: 267 SWNSVPNGNKL 277
SW + +G +L
Sbjct: 202 SWETAKHGKEL 212
>gi|322702335|gb|EFY94003.1| putative reverse transcriptase [Metarhizium anisopliae ARSEF 23]
Length = 695
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 116 ILCFTDGSKTENSTSC-AYTINKNVNSFRLNVVN----SVFSAELMAILLCLQNLKYLP- 169
++ ++DGS +E + +TI++N S R VF AE+ L L+ LP
Sbjct: 162 VIVYSDGSLSEKGAAGYGFTIHQNGRSLRQGAGRLGPAEVFDAEVRGALDGLKAALRLPQ 221
Query: 170 --STKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGN 227
S K ++ D++++ + + +++ ++ + L ++ W P H I+GN
Sbjct: 222 SASQKIVVCLDNIAAAGCLRGQPSDSS--QGVFLAFQALAKRHRQTDIRWIPGHSNIAGN 279
Query: 228 EAVDVAAK 235
E DV AK
Sbjct: 280 EQADVLAK 287
>gi|156044334|ref|XP_001588723.1| hypothetical protein SS1G_10270 [Sclerotinia sclerotiorum 1980]
gi|154694659|gb|EDN94397.1| hypothetical protein SS1G_10270 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 789
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 74/181 (40%), Gaps = 28/181 (15%)
Query: 116 ILCFTDGSKTE---NSTSCAYTINK-----NVNSFRLNVVNSVFSAELMAILLCLQNLKY 167
I F+DGSK+E N+T + I++ +SF L VF AE A +
Sbjct: 491 IQIFSDGSKSESKDNATGGGFVISQFDIQIAHHSFSLGTNAEVFDAEATAAVAGTAKALT 550
Query: 168 LPSTKFLLVTDSMSSLQ----AITSKSCNNALLSKIYSTWLDLVAC------------GK 211
L STK L TD L A+ S N +++ +L L GK
Sbjct: 551 LASTK--LATDLWIFLDNHEAALRLGSHFNGSSQRVFEDFLKLTQAWAVRPRLPHTSPGK 608
Query: 212 EISFMWCPSHCGISGNEAVDVAAKNPSP-SFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
I W P H I GNE D AAK + FP +C+ + K +I+ + + WN
Sbjct: 609 -IRVRWVPGHLDIPGNEIADKAAKEGTKLPFPLNPICTLASLKRMIRTRANKADEQLWNI 667
Query: 271 V 271
V
Sbjct: 668 V 668
>gi|322702768|gb|EFY94394.1| reverse transcriptase, RNaseH [Metarhizium anisopliae ARSEF 23]
Length = 561
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 25/190 (13%)
Query: 44 PKPLLMRAREITDFIANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQ 103
P PLL+ AR I F A + S + A + +V ++ S + KD +
Sbjct: 240 PVPLLLEARRIR-FAARLKSLDLAHPLAQRTDLTPIVRAVKRSCQTKNKDESA-----AD 293
Query: 104 FLVNINTKYHDRILCFTDGSKT-ENSTSCAYTINKNVNSFR-LNVVNSVFSAELMAILLC 161
FL + D ++ ++DGS+ +T Y +++N+ + L + A I++C
Sbjct: 294 FLKWLEGSSSDELVVYSDGSQLPGGATGYGYAVHQNIGALEGLRAAVKIPDASDNPIVVC 353
Query: 162 LQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSH 221
L NL + + L+ S S +A + + ++ A I W P H
Sbjct: 354 LDNLA------------AATCLRGTASDSSQSAFVK-----FQEITAAHGSIHVRWIPGH 396
Query: 222 CGISGNEAVD 231
I GNE D
Sbjct: 397 PDIPGNEQAD 406
>gi|294947382|ref|XP_002785360.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239899133|gb|EER17156.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 1627
Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 119 FTDGSKTENSTSCAYTINKN-----VNSFRLNVVNSVFSAELMAILLCLQNLKYLP--ST 171
+TDGSK +S A+ K +F+L ++ EL AI L+ L +
Sbjct: 1350 YTDGSKFGDSAGGAFLAVKEGEVVERQAFKLERFATIHQCELEAIRRALRWLSHSAHRGI 1409
Query: 172 KFLLVTDSMSSLQAITSKSCN--NALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEA 229
++LL TDS +S++ I + +A+ I L + ++ WCP H G+ NEA
Sbjct: 1410 EWLLFTDSQASIRTIRGREATERSAIARDIAHLGLHV-----QVQLNWCPGHEGVQWNEA 1464
Query: 230 VDVAAKNPSPSFPPLKLCSA-----SDYKPLIKKIVQRNWQSSW 268
VD A PL +A S K ++K ++++ +S W
Sbjct: 1465 VDQLANTGRKQLFPLDRGAAMMVPPSYVKHMLKTQMEKDTRSWW 1508
>gi|343419588|emb|CCD19354.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 561
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 19/214 (8%)
Query: 46 PLLMRAREITDFIANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFL 105
P+ +R ++ + IDS E P+D + W+ V + + G K + +V +
Sbjct: 138 PIHVRLAKVQHLYSVIDSPE-KPHDATVLQWARRV-HFNITTPGGLKADAPEKDKKVHTM 195
Query: 106 VNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAIL 159
+ +TDGS + +S A + R VV + AE +A+
Sbjct: 196 RRVQRFRDFDYQVWTDGSVVLDVSSGAGALVYPKEGRREKVVLGAGSLACSYRAECVAME 255
Query: 160 LCLQNLKYL------PSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGK 211
L+ L + T+ + TDS+S L A+ + + +A+L +I+ L +V
Sbjct: 256 AGLKRLVEVIELSKTHRTRVVAFTDSLSLLMALNTGPAAVEDAILRRIWDLILRIVRLRV 315
Query: 212 EISFMWCPSHCGISGNEAVDVAAK--NPSP-SFP 242
++F + SHCG+ NEA D AA+ N P S+P
Sbjct: 316 SVNFQFVFSHCGVPRNEAADKAAEQGNAKPQSYP 349
>gi|3776301|gb|AAC64709.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K K +VTDS L I+S+ + S I ++ + ++
Sbjct: 477 AELMAVLLALQDSK----EKVNIVTDSQYVLGIISSQPTQSE--SPIVQQIIEELTKKEQ 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 531 VYLTWVPAHKGIGGNEKID 549
>gi|2232039|gb|AAB82087.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 122 GSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMS 181
G TE +N+ N AELMA+LL LQ+ K K +VTDS
Sbjct: 456 GYVTEQGKQKIIKLNETTNQ----------KAELMAVLLALQDSK----EKVNIVTDSQY 501
Query: 182 SLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
L I+S+ + S I ++ + +++ W P+H GI GNE +D
Sbjct: 502 VLGIISSQPTQSE--SPIVQQIIEELTKKEQVYLTWVPAHKGIGGNEKID 549
>gi|242775779|ref|XP_002478708.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218722327|gb|EED21745.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 294
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P ++ D+ +++ + T AL+ + +
Sbjct: 21 HEVFDAELVGVATALEWALERQPLGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHRAAE 80
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAAKNP-----SPSFPPLKLC 247
L G+ ++ W P H GI GNE D AAK +P F L L
Sbjct: 81 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLA 128
>gi|407915534|gb|EKG09113.1| hypothetical protein MPH_13896 [Macrophomina phaseolina MS6]
Length = 288
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 149 SVFSAELMAILLCLQNLKYLPST----KFLLVTDSMSSLQAITS--KSCNNALLSKIYST 202
+VF+A+L AI + L +L + + + L TD+ ++L+A+ + + LL I
Sbjct: 14 TVFAAKLWAIEMAL-DLADVETAHNKRRIALFTDNQAALRALVTPGEQSEQYLLRSITPK 72
Query: 203 WLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSP-----------SFPPLKLCSASD 251
L G I F W PSH G+ GNE D AK + + P ++ +
Sbjct: 73 LTGLQQQGVSIKFHWVPSHRGVPGNEEADKLAKAAAQERRTLEAERCMTGPHVQPSLVAA 132
Query: 252 YKPLIKKIVQRNWQSSWNSVPNGNKL 277
K I + V W+ W G +L
Sbjct: 133 LKQAINQAVMDEWKQLWKDSERGRQL 158
>gi|156039247|ref|XP_001586731.1| hypothetical protein SS1G_11760 [Sclerotinia sclerotiorum 1980]
gi|154697497|gb|EDN97235.1| hypothetical protein SS1G_11760 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 374
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 71/181 (39%), Gaps = 28/181 (15%)
Query: 116 ILCFTDGSKTE---NSTSCAYTINK-----NVNSFRLNVVNSVFSAELMAILLCLQNLKY 167
I F+DGSK+E +T + I + SF L VF AE MA +
Sbjct: 76 IQIFSDGSKSESKDGATGGGFVITQFDIQVAQYSFSLGTNAEVFDAEAMAAVTGAAKALA 135
Query: 168 LPSTKFLLVTDSMSSLQ----AITSKSCNNALLSKIYSTWLDL------------VACGK 211
LPS K L TD L A+ S N ++ +L L + GK
Sbjct: 136 LPSIK--LATDLWIFLDNYEVALRLGSHFNGSSQAVFEDFLKLKQAWAARPRLSHIPPGK 193
Query: 212 EISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLK-LCSASDYKPLIKKIVQRNWQSSWNS 270
I W P H I GNE D AAK + PP C+ + K LI+ + WN+
Sbjct: 194 -IRIHWVPGHLNIPGNEMADKAAKEGAKLPPPPNPACTLASLKRLIRSKTNKADNQLWNT 252
Query: 271 V 271
V
Sbjct: 253 V 253
>gi|242825825|ref|XP_002488518.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712336|gb|EED11762.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 427
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 28/187 (14%)
Query: 117 LCFTDGSKTENSTSCAYTI---NKNVNSFRLNVVN-----SVFSAELM----AILLCL-- 162
+ ++D S +N A + N+N+ R + S+ AEL+ AI L L
Sbjct: 102 VVYSDASGHDNHLGAAAVVLDRNQNIVVSRKTAIGPMAHWSIHIAELIGVYYAISLALKI 161
Query: 163 -----QNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISF 215
Q+ + +++DS S++QAI + + ++ I + +L + G +
Sbjct: 162 FHQNGQSTRPGAGEAITILSDSKSAIQAIKNPRNTSGQRVIEAINQSAYELDSRGIPLHL 221
Query: 216 MWCPSHCGISGNEAVDVAAK---NPSPSFPPLKLCS-ASDYKPLIKKIVQRNWQSSWNSV 271
W P HC GN+A D AK P+ + P C S K I++ + + W+ W +
Sbjct: 222 QWIPGHCDNLGNDAADRLAKAAVGPTKTHP---FCRPVSREKAAIQRQILKEWEDEWKTS 278
Query: 272 PNGNKLK 278
G L+
Sbjct: 279 NKGTHLQ 285
>gi|242825403|ref|XP_002488433.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712251|gb|EED11677.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 458
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 15/144 (10%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVV-------NSVFSAELMAILLCLQ-NLKYLPS 170
++DGS+ + + A + V V + VF AEL+ + L+ L+ P
Sbjct: 138 WSDGSRLDTGRAGAGVALQAVPGGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQPL 197
Query: 171 TKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
++ D+ +++ + T AL+ + + L G+ ++ W P H GI GNE
Sbjct: 198 GPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHKAAEKLALRGQPVTIQWVPGHSGIEGNE 257
Query: 229 AVDVAAKNP-----SPSFPPLKLC 247
D AAK +P F L L
Sbjct: 258 QADQAAKRAASKQTAPGFEYLSLA 281
>gi|3776303|gb|AAC64710.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K K +VTDS L I+S+ + S I ++ + ++
Sbjct: 477 AELMAVLLALQDSK----EKVNIVTDSQYVLGIISSQPTQSE--SPIVQQIIEELTKKEQ 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 531 VYLTWVPAHKGIGGNEKID 549
>gi|242807844|ref|XP_002485040.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218715665|gb|EED15087.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 839
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P ++ D+ +++ + T AL+ + +
Sbjct: 301 HEVFDAELVGVATALEWALERQPLGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHKAAE 360
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAAKNP-----SPSFPPLKLC 247
L G+ ++ W P H GI GNE D AAK +P F L L
Sbjct: 361 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLA 408
>gi|2708267|gb|AAB92394.1| putative reverse transcriptase [Drosophila subobscura]
Length = 675
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 27/188 (14%)
Query: 114 DRILCFTDGSKTENSTSCA-YTINKNVN-SFRLNVVNSVFSAELMAI---LLCLQNLKYL 168
+ I FTDGSK +N Y+ N++ SFRL SVF AE++AI L CLQ L
Sbjct: 393 EAIQIFTDGSKLDNKVGGGIYSELLNISYSFRLPDHCSVFQAEVIAIKEALSCLQELT-- 450
Query: 169 PSTKFL-LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGN 227
P ++ + +DS ++++++ + + ++A ++ + L +A IS +W P H I GN
Sbjct: 451 PEATYINIYSDSQAAIKSLNAITTSSATVANCRKS-LHEMAYQFVISLIWVPGHQDIEGN 509
Query: 228 EAVDVAAKNPSPSFP----------PLKLCSASDYKPLIKKIVQRNWQS------SWNSV 271
D A+ + P P+ C K KK+ WQ+ + +
Sbjct: 510 CIADELAR-AGTTIPLLNDKEDIRMPMATCKLR-IKEHFKKLTNDRWQTVPLCRITRQTW 567
Query: 272 PNGNKLKT 279
PN N+ +T
Sbjct: 568 PNINRKRT 575
>gi|156062308|ref|XP_001597076.1| hypothetical protein SS1G_01270 [Sclerotinia sclerotiorum 1980]
gi|154696606|gb|EDN96344.1| hypothetical protein SS1G_01270 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 374
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 68/181 (37%), Gaps = 28/181 (15%)
Query: 116 ILCFTDGSKTE--------NSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKY 167
I F+DGSK+E N + I SF L + VF E MA +
Sbjct: 76 IQIFSDGSKSESKDGAIGGNFVITQFDIQVAHYSFSLGINTEVFDVEAMAAVTGAAKALA 135
Query: 168 LPSTKFLLVTDSMSSLQ----AITSKSCNNALLSKIYSTWLDLVAC------------GK 211
LPS K L TD L A+ S N ++ +L L GK
Sbjct: 136 LPSIK--LATDLWIFLDNYEVALRLGSHFNGSSQAVFEDFLKLTQAWAARPRLPHIPPGK 193
Query: 212 EISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLK-LCSASDYKPLIKKIVQRNWQSSWNS 270
I W P H I GNE D AAK + PP C+ + K LI+ + WN+
Sbjct: 194 -IRIHWVPGHLNIPGNEMADKAAKEGAKLPPPPNPACTLASLKRLIRSKTNKADNQLWNT 252
Query: 271 V 271
V
Sbjct: 253 V 253
>gi|242818213|ref|XP_002487072.1| hypothetical protein TSTA_054710 [Talaromyces stipitatus ATCC
10500]
gi|218713537|gb|EED12961.1| hypothetical protein TSTA_054710 [Talaromyces stipitatus ATCC
10500]
Length = 216
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 179 SMSSLQAI-TSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP 237
S +++QAI ++ +L I W +L + G +++ W P+H GI GNE D+AAK
Sbjct: 13 SQAAIQAIDGAQKTGQQILGSIAEKWDELRSQGVQVTIHWIPAHQGIEGNERADIAAKEA 72
Query: 238 S 238
+
Sbjct: 73 T 73
>gi|4586458|dbj|BAA76384.1| reverse transcriptase [Magnaporthe grisea]
Length = 288
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 20/143 (13%)
Query: 116 ILCFTDGSKTENSTSCAYTINKNVNSFRLNVV-----------NSVFSAELMAILLCLQN 164
I+ +TDGS+ ++ +C I +FR + + VF AE + L LQ
Sbjct: 2 IVVYTDGSE-KHENNCV-QIGYGWAAFRAGLEFAAAAASITPESHVFDAEAIGALKGLQA 59
Query: 165 L-KYLPSTKFLLVTDSMS---SLQAITSKSCNNALLSKIYSTWLDLV-ACGKEISFMWCP 219
K P + + DS S L+ +S A L + +DL+ G E+ WCP
Sbjct: 60 AAKAQPGARIWICVDSTSVIWGLKGDAPRSSQWAFLE--FHDLVDLLRKQGTEVRVRWCP 117
Query: 220 SHCGISGNEAVDVAAKNPSPSFP 242
H GI GN+ D AK S P
Sbjct: 118 GHQGIPGNDRADELAKAGSAGPP 140
>gi|156046084|ref|XP_001589597.1| reverse transcriptase [Sclerotinia sclerotiorum 1980]
gi|154693714|gb|EDN93452.1| reverse transcriptase [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1708
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Query: 74 PPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDR--ILCFTDGSKTENSTSC 131
PPW P +S K+D L NI KY D+ +TD S TE
Sbjct: 1383 PPWKRETPFRVNISNSSKED--------AAILHNIVFKYRDKDTTYIYTDASSTEKGIGI 1434
Query: 132 AYTI------NKNVNSFRLNVVNS--VFSAELMAILLCLQNLKYLPST--KFLLVTDSMS 181
I N+ + R N+ + V++ EL + ++ + T KF + +D+ +
Sbjct: 1435 GVGIVAIQSNNRILYQERSNIGTNQLVYNGELFGVTRAIEYASSIAYTGQKFKIYSDNQA 1494
Query: 182 SLQAITSKSCNNALLSKIYSTWLDLV--ACGKEISFMWCPSHCGISGNEAVDVAAKNPSP 239
L + + S + ++I + V A G EIS W P H + GNE D AK +
Sbjct: 1495 GLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEISLNWVPDHTSVEGNELADKLAKEATT 1554
Query: 240 SFP 242
P
Sbjct: 1555 IQP 1557
>gi|242765602|ref|XP_002341008.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218724204|gb|EED23621.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 592
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AELM + L+ L+ P + D+ +++ + T AL+ + +
Sbjct: 301 HEVFDAELMGVATALEWALERQPLGPIWVFLDAQNAIDRLRSTRPGPGQALVLRAHKAAE 360
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAAKNP-----SPSFPPLKLC 247
L G+ ++ W P H GI GNE D AAK +P F L L
Sbjct: 361 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLA 408
>gi|242797976|ref|XP_002483073.1| hypothetical protein TSTA_009600 [Talaromyces stipitatus ATCC
10500]
gi|218716418|gb|EED15839.1| hypothetical protein TSTA_009600 [Talaromyces stipitatus ATCC
10500]
Length = 701
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAAKNP---SPSFPPLKLCSASDYKPLIKKIVQ 261
+L A G + W P HCG GNEA D AK P L S K I+ +Q
Sbjct: 236 ELKARGIPLRLQWVPGHCGDPGNEAADRLAKEAVGLDKEHPFQHLLSRE--KGFIRNRIQ 293
Query: 262 RNWQSSWNSVPNGNKLK 278
W+ W + NG L+
Sbjct: 294 EEWERGWKTSKNGGHLR 310
>gi|242763116|ref|XP_002340512.1| hypothetical protein TSTA_065780 [Talaromyces stipitatus ATCC
10500]
gi|218723708|gb|EED23125.1| hypothetical protein TSTA_065780 [Talaromyces stipitatus ATCC
10500]
Length = 190
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 150 VFSAELMAILLCLQNL--KYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWLD 205
VF AELM + L+ ++L ++L+ D+ +++ + T+ +L + Y
Sbjct: 37 VFDAELMGVASALEWALERHLEGPIYVLL-DAQAAINRLQSTAPGAGQSLALRAYGAASR 95
Query: 206 LVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
L G+ ++ W P H G+ GNE D AAK S
Sbjct: 96 LARSGRPVTIQWVPRHSGVEGNEQADQAAKRAS 128
>gi|242786247|ref|XP_002480768.1| hypothetical protein TSTA_035600 [Talaromyces stipitatus ATCC
10500]
gi|218720915|gb|EED20334.1| hypothetical protein TSTA_035600 [Talaromyces stipitatus ATCC
10500]
Length = 278
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 20/105 (19%)
Query: 148 NSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLV 207
+ VF AEL+ +LL QN D + S T AL+ + + L
Sbjct: 5 HEVFDAELVGMLLGAQN-----------AIDRLRS----TRPGPGQALVLRAHRAAEKLA 49
Query: 208 ACGKEISFMWCPSHCGISGNEAVDVAAKNP-----SPSFPPLKLC 247
G+ ++ W P H GI GNE D AAK +P F L L
Sbjct: 50 LRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLA 94
>gi|154274349|ref|XP_001538026.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415634|gb|EDN10987.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1838
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDL 206
+V++AEL+ IL+ L + + + TD+ ++L+A+ + +S ++L +I +
Sbjct: 1564 TVYAAELLGILMGLNLILTSDRRRAAIFTDNQAALRALQNPRRSSGQSILRRIIDALERV 1623
Query: 207 VACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
+ G ++ F W P+H GI GNE D AK +
Sbjct: 1624 RSQGLQVEFYWIPAHQGIEGNELADKLAKEAT 1655
>gi|242798615|ref|XP_002483206.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218716551|gb|EED15972.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 533
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 15/144 (10%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVV-------NSVFSAELMAILLCLQ-NLKYLPS 170
++DGS+ + + A + V V + VF AEL+ + L+ L+ P
Sbjct: 206 WSDGSRLDTGRAGAGVTLQAVPGGPWEHVEVPMGHGHEVFDAELVGVATALEWALERQPL 265
Query: 171 TKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
+ D+ +++ + T AL+ + + L G+ ++ W P H GI GNE
Sbjct: 266 DPIWVFLDAQNAIDRLRSTRPGPGQALVLRAHKAAEKLALRGQPVTIQWVPGHSGIEGNE 325
Query: 229 AVDVAAKNP-----SPSFPPLKLC 247
D AAK +P F L L
Sbjct: 326 QADQAAKRAASKQTAPGFEHLSLA 349
>gi|393702204|gb|AFN16294.1| L1Tco protein [Trypanosoma congolense]
Length = 1505
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 30/232 (12%)
Query: 73 IPPWS---------SVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGS 123
+PPWS + D SL KD + S + L I H + L TDG
Sbjct: 1025 VPPWSVSHASKVTFGLTVEYDKSL--THKDAIR-SAKKWASLHEIGKHNHFQWLIATDGG 1081
Query: 124 KTENSTSCAYTINKNVN--------SFRLNVVNSVFSAELMAILLCLQNLKY----LPST 171
+ + K+V+ S V+S + AE +A+LL L L +
Sbjct: 1082 IQSPMPAGVGLLFKSVSHPVLMKQVSVNCGSVSSSYRAESVAMLLALDRLVMPMADVKHK 1141
Query: 172 KFLLVTDSMSSLQAITSKSCNNALLSK--IYSTWLDLVACGKEISFMWCPSHCGISGNEA 229
L+VTDS S L A++ + ++ I++ ++L G I F +C SHCG+ NE
Sbjct: 1142 TLLIVTDSQSLLNALSKGPLSQCDYTEDVIWTRLIELTLQGWLIHFQFCHSHCGVVVNEM 1201
Query: 230 VDVAA----KNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
D A +N + P +K D LI + +++ W +S + + KL
Sbjct: 1202 ADEYATQCMENGHFTEPSVKPPWHRDLVALIIRQLKKRWAASLRTDTHRYKL 1253
>gi|357621762|gb|EHJ73487.1| non-LTR retrotransposon CATS [Danaus plexippus]
Length = 261
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 159 LLCLQNLKYLPSTK-FLLVTDSMSSLQAITS-KSCNNALLSKIYSTWLDLVACGKEISFM 216
LL +Q L + + F V+ S + AI S +S + ++KI+ST + I F
Sbjct: 60 LLSMQRAFALKAIRGFRTVSISAALALAIPSNRSKTHPWVAKIHST---VHHTSGSIEFA 116
Query: 217 WCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRN--------WQSSW 268
W +H GI GNEA D A K + KL A DY + ++ + WQS +
Sbjct: 117 WVKAHVGIVGNEAADTAVKRAA------KLHKAPDYTQFLITFIKHSTRSLHTSVWQSRY 170
Query: 269 NSVPNGNKLKTY 280
S P G K +
Sbjct: 171 ESEPQGQHTKEH 182
>gi|2290213|gb|AAB65093.1| Lian-Aa1 retrotransposon protein [Aedes aegypti]
Length = 1189
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 17/177 (9%)
Query: 116 ILCFTDGSKTENSTSCA-YTINKNVNSF-RLNVVNSVFSAELMAILLCLQNL--KYLPST 171
I+C+TDGS E Y+ +N F L +VF AE+ A++ +Q+ + +
Sbjct: 913 IVCYTDGSLLEGRAGAGVYSRELRLNQFYSLGRNCTVFQAEIFALMCGVQSALQQRVMGK 972
Query: 172 KFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+DS ++++A+ S + + L+ T ++ + ++ +W P H I+GNE D
Sbjct: 973 VIYFCSDSQAAIKALASANSRSKLVIAC-RTQIEELNSVNSVNLVWVPGHSSIAGNELAD 1031
Query: 232 VAAKN--------PSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTY 280
A++ P P+ P S K I + WNS+ + + K Y
Sbjct: 1032 ELARDGASHDFIGPEPAIP----ISKCWVKLQINSWAATQHKQYWNSLESCRQTKLY 1084
>gi|358376670|dbj|GAA93204.1| hypothetical protein AKAW_11316 [Aspergillus kawachii IFO 4308]
Length = 452
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 24/154 (15%)
Query: 105 LVNINTKYHDRILCFTDGSKTENS-TSCAYTINKNVNSFRLNVVN-------SVFSAELM 156
+ IN + H R F+D S +N + A +N+++ V+ SV++AELM
Sbjct: 1 MAAINRRRHTRNYGFSDASGQQNHLGAAAVALNEDLQISESRQVSIGSMEHWSVYAAELM 60
Query: 157 A----ILLCLQ----NLKYLPSTKF--LLVTDSMSSLQAITSKSCNNALLSKIYSTWLDL 206
A I L LQ +L + +++DSMS+LQAI S S N +I L +
Sbjct: 61 AFFYAISLVLQVTWKRQSHLDRVEHPAAILSDSMSALQAIRSPS--NRSGRRIIRAILQV 118
Query: 207 V----ACGKEISFMWCPSHCGISGNEAVDVAAKN 236
A G + W P HC GN+ D AK
Sbjct: 119 ASRNDARGIPVRLQWVPRHCNDPGNDEADRLAKE 152
>gi|302594740|gb|ADL59558.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K K +VTDS L I+S+ + S I ++ + ++
Sbjct: 37 AELMAVLLALQDSK----EKVNIVTDSQYVLGIISSQPTQSD--SPIVQQIIEELTKKEK 90
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 91 VYLTWVPAHKGIGGNEKID 109
>gi|242814632|ref|XP_002486407.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218714746|gb|EED14169.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 454
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 148 NSVFSAELMAILLCLQ---NLKYL-PSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTW 203
+ VF AEL+ + L+ ++L P FL +++ L++ T AL+ + +
Sbjct: 163 HEVFDAELVGVATALEWALERQFLGPIWVFLDAQNAIDRLRS-TRPGPGQALVLRAHRAA 221
Query: 204 LDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP-----SPSFPPLKLC 247
L G+ ++ W P H GI GNE D AAK +P F L L
Sbjct: 222 EKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLA 270
>gi|242807798|ref|XP_002485031.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218715656|gb|EED15078.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 361
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P + D+ +++ + T AL+ + +
Sbjct: 70 HEVFDAELVGVATALEWALERQPLGPIWVFLDAQNAIDRLRSTRPGPGQALVLRAHKAAE 129
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAAKNP-----SPSFPPLKLC 247
L G+ ++ W P H GI GNE D AAK +P F L L
Sbjct: 130 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLA 177
>gi|407915499|gb|EKG09088.1| hypothetical protein MPH_13927 [Macrophomina phaseolina MS6]
Length = 549
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 99/269 (36%), Gaps = 54/269 (20%)
Query: 41 PNTPKPLLMRAREITDFIANIDSSEFAPYDKHIP----PWSSVVP-------SIDTSLHS 89
P T PLL R RE + A + A ++ +P PW P + + H+
Sbjct: 173 PTTSSPLL-RIRE--QWKAKLGDENTANIERRLPHLFFPWWRPPPVEIAGSRELAVAQHN 229
Query: 90 GKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNS 149
+DN + +L +TDGS N A I + + R + S
Sbjct: 230 QIRDNT------------------EGVLIYTDGSAV-NGHVGAAAIAPGMCTSRKRYIGS 270
Query: 150 -----VFSAELMAILLCLQNLKYLPS---TKFLLVTDSMSSLQAIT--SKSCNNALLSKI 199
V++AEL I + L+ S TKF TD+ ++L+A+ +L+ +
Sbjct: 271 TRCTTVYAAELQGIEMALEIAGTAISQGITKFSAFTDNQAALRALIHPGDHSGQQILASV 330
Query: 200 YSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK-----------NPSPSFPPLKLCS 248
L G F W P+H G+ GNE+ D AK + P +
Sbjct: 331 ILKLQQLWGAGASFDFHWIPAHQGVPGNESADALAKAAAQQGRTLESGDRATGPRTQDSL 390
Query: 249 ASDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
+ + I + V W+ W G +L
Sbjct: 391 IAALRQSIHQAVMEEWKKLWRESARGRQL 419
>gi|37935980|gb|AAO47217.1| pol protein [Human immunodeficiency virus 1]
Length = 1027
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMAILL LQ+ K K +VTDS +L I+S+ + S I ++ + ++
Sbjct: 646 AELMAILLALQDSK----EKVNIVTDSQYALGIISSQPTQSE--SPIVQQIIEELTRKEQ 699
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 700 VYLAWVPAHKGIGGNEKID 718
>gi|242794525|ref|XP_002482393.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218718981|gb|EED18401.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 523
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P ++ D+ +++ + T AL+ + +
Sbjct: 232 HEVFDAELVGVATALEWALERQPLDPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHRAVE 291
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAAKNP-----SPSFPPLKLC 247
L G+ ++ W P H G+ GNE D AAK +P F L L
Sbjct: 292 KLAMRGQPVTIQWVPGHSGVVGNEQADQAAKRAASKQTAPGFEHLSLA 339
>gi|443691275|gb|ELT93184.1| hypothetical protein CAPTEDRAFT_223991 [Capitella teleta]
Length = 391
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 210 GKEISFMWCPSHCGISGNEAVDVAAKN----PSPSFPPLKLCSASDYKPLIKKIVQRNWQ 265
GK + F+WCPS+ GI G+E D K P P S SD+K I IV+ WQ
Sbjct: 272 GKLVVFLWCPSYVGILGDEVADRLTKQALVMPVTDLP----LSHSDFKYPICSIVKSFWQ 327
Query: 266 SSWNSVPNGNKLKT 279
S W+ NKL +
Sbjct: 328 SEWDD-ETENKLHS 340
>gi|321461852|gb|EFX72880.1| hypothetical protein DAPPUDRAFT_325810 [Daphnia pulex]
Length = 268
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Query: 116 ILCFTDGSKT--ENSTSCAY---TINKNVNSFRLNVVNSVFSAELMAILLCLQ---NLKY 167
I +TDGSK+ + +T+CA +NK +++ L +S+F+AE+ AI L+ ++
Sbjct: 94 IRAYTDGSKSSSQETTTCAIFIPALNKE-HAWTLTKGSSIFTAEVTAIYQALKLFYDMDD 152
Query: 168 LPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGN 227
P + S + ++ N ++ I L + G W PSH GI GN
Sbjct: 153 CPPEAIIYSDSSSAITAISSNSLSENEAITAIREIIASLKSSGTRTRLTWIPSHTGIEGN 212
Query: 228 EAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSS 267
E D A + ++ ++ K ++ I++ NW SS
Sbjct: 213 ERTDRLAATECNTQDGEEVHNSLSPKEMV-SIIRANWASS 251
>gi|343415123|emb|CCD20778.1| reverse transcriptase (RNA-dependent DNA polymerase) [Trypanosoma
vivax Y486]
Length = 1266
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 29/219 (13%)
Query: 46 PLLMRAREITDFIANIDSSEFAPYDKHIPPWSSVVP-SIDT----SLHSGKKDNVSPSVF 100
P+ +R ++ + IDS E P+D + W+ V +I T + +KD SV
Sbjct: 904 PIHVRLAKVQKLYSIIDSPE-KPHDATVLQWARRVHFNITTPGGLKADAPEKDKKVHSVR 962
Query: 101 QVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAE 154
+VQ + + + +TDGS + +S A + R VV + AE
Sbjct: 963 RVQRFRDFDYQ------VWTDGSVVLDVSSGAGALVYPKEGRREKVVLGAGSLACNYRAE 1016
Query: 155 LMAI------LLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDL 206
+A+ L+ + L T+ + TDS+S L A+ + + +A+L +I+ L +
Sbjct: 1017 CVAMEAGLKRLVDVIELSKTHRTRVVAFTDSLSLLMALNTGPAAVEDAILRRIWDLILHI 1076
Query: 207 VACGKEISFMWCPSHCGISGNEAVDVAAK--NPSP-SFP 242
V ++F + SHCG+ NEA D AA+ N P S+P
Sbjct: 1077 VRLRVSVNFQFVFSHCGVPRNEAADKAAEQGNAKPQSYP 1115
>gi|321452689|gb|EFX64018.1| hypothetical protein DAPPUDRAFT_334682 [Daphnia pulex]
Length = 197
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 12/161 (7%)
Query: 116 ILCFTDGSKT--ENSTSCAY---TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYL-- 168
I +TDGSK+ + +T+CA +NK +++ L +S+F+AE+ AI L+ L Y+
Sbjct: 23 IRAYTDGSKSSSQETTTCAIFIPALNKE-HAWTLTKGSSIFTAEVTAIYQALK-LFYVMD 80
Query: 169 --PSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226
P F+ S + ++ N ++ L + G W PSH GI G
Sbjct: 81 DCPPEAFIYSDSSSAITAISSNSLSENEAITATREIIASLKSSGTRTRLTWIPSHTGIEG 140
Query: 227 NEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSS 267
NE D A + ++ ++ K ++ I++ NW SS
Sbjct: 141 NERTDRLAATECNTRDGEEVHNSLSPKEMV-SIIRANWASS 180
>gi|156064993|ref|XP_001598418.1| hypothetical protein SS1G_00507 [Sclerotinia sclerotiorum 1980]
gi|154691366|gb|EDN91104.1| hypothetical protein SS1G_00507 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1477
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Query: 74 PPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDR--ILCFTDGSKTENSTSC 131
PPW P +S K+D L NI K+ D+ +TD S TE
Sbjct: 1272 PPWKRETPFRVNISNSSKED--------AAILHNIVFKHRDKDTTYIYTDASSTEKGIGI 1323
Query: 132 AYTI------NKNVNSFRLNVVNS--VFSAELMAILLCLQNLKYLPST--KFLLVTDSMS 181
I N+ + R N+ + V++ EL + ++ + T KF + +D+ +
Sbjct: 1324 GVGIVAIQSNNRILYQERSNIGTNQLVYNGELFGVTRAIEYASSIAYTGQKFKIYSDNQA 1383
Query: 182 SLQAITSKSCNNALLSKIYSTWLDLV--ACGKEISFMWCPSHCGISGNEAVDVAAKNPSP 239
L + + S + ++I + V A G EIS W P H + GNE D AK +
Sbjct: 1384 GLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEISLNWVPGHTSVEGNELADKLAKEATT 1443
Query: 240 SFP 242
P
Sbjct: 1444 IQP 1446
>gi|443694031|gb|ELT95266.1| hypothetical protein CAPTEDRAFT_227918 [Capitella teleta]
Length = 574
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 215 FMWCPSHCGISGNEAVDVAAKNPSPSFPPLKL-CSASDYKPLIKKIVQRNWQSSWNS 270
WCPSH G+ GNE D+ AK + SF + +SD+KP+ + + WQ W+S
Sbjct: 1 MAWCPSHVGVMGNERADLLAKE-ALSFTTCTIRIPSSDFKPITHEFFKEKWQEQWSS 56
>gi|392596897|gb|EIW86219.1| hypothetical protein CONPUDRAFT_29773, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 97
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 149 SVFSAELMAILLCLQNLKY---LPSTKFLLVTDSMSSLQAITSKSC----NNALLSKIYS 201
+V+ AEL+++LL LK + L DS ++++A +K C + L+ +
Sbjct: 1 TVYEAELVSMLLAAHLLKRELARRQGRAFLGVDSQAAIRA--TKGCSPTPGHYLVDAVTE 58
Query: 202 TWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPS 240
+ DL G + W P H GI GNE D AK +
Sbjct: 59 AFEDLQDRGHHVRVRWTPGHVGIDGNERADELAKAAAEG 97
>gi|154284844|ref|XP_001543217.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150406858|gb|EDN02399.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1758
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVV-----NSVFSAELMAILLCLQNLKYLPSTKF 173
+TDGS A + ++++ L + +V++AEL+ I + L + +
Sbjct: 1448 YTDGSDIHGKVGAA-ALAPSIHTQELAYLGKETSTTVYAAELLGIHMGLNLILASGRRRA 1506
Query: 174 LLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ TD+ ++L+A+ + +S ++L +I T + + G ++ F W P+H GI GNE D
Sbjct: 1507 AIFTDNQAALKALQNPRRSSGQSILRRIMDTLERVNSQGLQVEFYWIPAHQGIEGNELAD 1566
Query: 232 VAAKNPS 238
AK +
Sbjct: 1567 KLAKEAT 1573
>gi|156039948|ref|XP_001587081.1| hypothetical protein SS1G_12110 [Sclerotinia sclerotiorum 1980]
gi|154696167|gb|EDN95905.1| hypothetical protein SS1G_12110 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1500
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Query: 74 PPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDR--ILCFTDGSKTENSTSC 131
PPW P +S K+D L NI K+ D+ +TD S TE
Sbjct: 1130 PPWKRETPFRVNISNSSKED--------AAILHNIVFKHRDKDTTYIYTDASSTEKGIGI 1181
Query: 132 AYTI------NKNVNSFRLNVVNS--VFSAELMAILLCLQNLKYLPST--KFLLVTDSMS 181
I N+ + R N+ + V++ EL + ++ + T KF + +D+ +
Sbjct: 1182 GVGIVAIQSNNRILYQERSNIGTNQLVYNGELFGVTRAIEYASSIAYTGQKFKIYSDNQA 1241
Query: 182 SLQAITSKSCNNALLSKIYSTWLDLV--ACGKEISFMWCPSHCGISGNEAVDVAAKNPSP 239
L + + S + ++I + V A G EIS W P H + GNE D AK +
Sbjct: 1242 GLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEISLNWVPGHTSVEGNELADKLAKEATT 1301
Query: 240 SFP 242
P
Sbjct: 1302 IQP 1304
>gi|242808962|ref|XP_002485270.1| hypothetical protein TSTA_047630 [Talaromyces stipitatus ATCC
10500]
gi|218715895|gb|EED15317.1| hypothetical protein TSTA_047630 [Talaromyces stipitatus ATCC
10500]
Length = 134
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 173 FLLVTDSMSSLQAI-TSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
++ DS +++QAI ++ +L I W +L + G +++ W +H GI GNE D
Sbjct: 1 MIIFCDSQATIQAINGAQKTGQQILGSIAEKWDELRSQGVQVTIHWILAHQGIKGNERAD 60
Query: 232 VAAKNPS 238
+AAK +
Sbjct: 61 IAAKEAT 67
>gi|37935891|gb|AAO47138.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K K +VTDS +L I+S+ + S I ++ + ++
Sbjct: 628 AELMAVLLALQDSK----EKINIVTDSQYALGIISSQPTQSE--SPIVQQIIEELTKKEK 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 682 VYLTWVPAHKGIGGNEKID 700
>gi|156037406|ref|XP_001586430.1| hypothetical protein SS1G_12414 [Sclerotinia sclerotiorum 1980]
gi|154697825|gb|EDN97563.1| hypothetical protein SS1G_12414 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 922
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Query: 74 PPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDR--ILCFTDGSKTENSTSC 131
PPW P +S K+D L NI K+ D+ +TD S TE
Sbjct: 553 PPWKRETPFRVNISNSSKED--------AAILHNIVFKHRDKDTTYIYTDASSTEKGIGI 604
Query: 132 AYTI------NKNVNSFRLNVVNS--VFSAELMAILLCLQNLKYLPST--KFLLVTDSMS 181
I N+ + R N+ + V++ EL + ++ + T KF + +D+ +
Sbjct: 605 GVGIVAIQSNNRILYQERSNIGTNQLVYNGELFGVTRAIEYASSIAYTGQKFKIYSDNQA 664
Query: 182 SLQAITSKSCNNALLSKIYSTWLDLV--ACGKEISFMWCPSHCGISGNEAVDVAAKNPSP 239
L + + S + ++I + V A G EIS W P H + GNE D AK +
Sbjct: 665 GLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEISLNWVPGHTSVEGNELADKLAKEATT 724
Query: 240 SFP 242
P
Sbjct: 725 IQP 727
>gi|156043557|ref|XP_001588335.1| hypothetical protein SS1G_10782 [Sclerotinia sclerotiorum 1980]
gi|154695169|gb|EDN94907.1| hypothetical protein SS1G_10782 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 674
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Query: 74 PPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDR--ILCFTDGSKTENSTSC 131
PPW P +S K+D L NI K+ D+ +TD S TE
Sbjct: 305 PPWKRETPFRVNISNSSKED--------AAILHNIVFKHRDKDTTYIYTDASSTEKGIGI 356
Query: 132 AYTI------NKNVNSFRLNVVNS--VFSAELMAILLCLQNLKYLPST--KFLLVTDSMS 181
I N+ + R N+ + V++ EL + ++ + T KF + +D+ +
Sbjct: 357 GVGIVAIQSNNRILYQERSNIGTNQLVYNGELFGVTRAIEYASSIAYTGQKFKIYSDNQA 416
Query: 182 SLQAITSKSCNNALLSKIYSTWLDLV--ACGKEISFMWCPSHCGISGNEAVDVAAKNPSP 239
L + + S + ++I + V A G EIS W P H + GNE D AK +
Sbjct: 417 GLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEISLNWVPGHTSVEGNELADKLAKEATT 476
Query: 240 SFP 242
P
Sbjct: 477 IQP 479
>gi|156052453|ref|XP_001592153.1| hypothetical protein SS1G_06392 [Sclerotinia sclerotiorum 1980]
gi|154704172|gb|EDO03911.1| hypothetical protein SS1G_06392 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 852
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Query: 74 PPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDR--ILCFTDGSKTENSTSC 131
PPW P +S K+D L NI K+ D+ +TD S TE
Sbjct: 482 PPWKRETPFRVNISNSSKED--------AAILHNIIFKHRDKDTTYIYTDASSTEKGIGI 533
Query: 132 AYTI------NKNVNSFRLNVVNS--VFSAELMAILLCLQNLKYLPST--KFLLVTDSMS 181
I N+ + R N+ + V++ EL + ++ + T KF + +D+ +
Sbjct: 534 GVGIVAIQSNNRILYQERSNIGTNQLVYNGELFGVTRAIEYASSIAYTGQKFKIYSDNQA 593
Query: 182 SLQAITSKSCNNALLSKIYSTWLDLV--ACGKEISFMWCPSHCGISGNEAVDVAAKNPSP 239
L + + S + ++I + V A G EIS W P H + GNE D AK +
Sbjct: 594 GLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEISLNWVPGHTSVEGNELADKLAKEATT 653
Query: 240 SFP 242
P
Sbjct: 654 IQP 656
>gi|256252577|dbj|BAH97686.1| Pol [Human immunodeficiency virus 1]
Length = 1009
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K K +VTDS +L I+S+ + S I ++ + ++
Sbjct: 628 AELMAVLLALQDSK----EKVNIVTDSQYTLGIISSQPTQSE--SPIVQQIIEELTKKEK 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 682 VYLTWVPAHKGIGGNEKID 700
>gi|37935871|gb|AAO47121.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K K +VTDS +L I+S+ + S I ++ + ++
Sbjct: 628 AELMAVLLALQDSK----EKVNIVTDSQYTLGIISSQPTQSE--SPIVQQIIEELTKKEK 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 682 VYLTWVPAHKGIGGNEKID 700
>gi|312376130|gb|EFR23313.1| hypothetical protein AND_13122 [Anopheles darlingi]
Length = 361
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 89/225 (39%), Gaps = 26/225 (11%)
Query: 28 NEFFNRNYDFANHPNTPKPLLMRAREITDFIANI---DSSEFAPYDKHIPPWSSVV---- 80
N + A H NT P E F+ I S F KHI +
Sbjct: 83 NRLYGELQAAAVHGNTGAPW---TDERLSFLRRIFLEHRSVFEAIAKHIRTVELLTDVPV 139
Query: 81 -PSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNV 139
P++D S + N+ P + + ++Y + +TD SK+ + C +
Sbjct: 140 NPTLDQLTLS--RANLQPETLRRLTEYALESEYCGWVHIYTDASKSPDG-QCGIGVYDET 196
Query: 140 NSFR----LNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSS---LQAITSKSCN 192
N R L + S+ +AE +AI + +Q++ + +L+TDS ++ L+
Sbjct: 197 NDVRIALQLALDTSIMTAETLAIKVAMQHIADRGIRRAVLLTDSQAACMFLRRNRESRVR 256
Query: 193 NALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP 237
NA+ +I +A +++ W P H +SGN D A+
Sbjct: 257 NAVADEILR-----MARTFQVTIQWIPGHVEVSGNRIADELARTA 296
>gi|256252567|dbj|BAH97677.1| Pol [Human immunodeficiency virus 1]
Length = 1009
Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K K +VTDS +L I+S+ + S I ++ + ++
Sbjct: 628 AELMAVLLALQDSK----EKVNIVTDSQYTLGIISSQPTQSE--SPIVQQIIEELTKKEK 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 682 VYLTWVPAHKGIGGNEKID 700
>gi|425783431|gb|EKV21281.1| hypothetical protein PDIP_08070 [Penicillium digitatum Pd1]
Length = 268
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 107 NINTKYHDRILCFTDGSKTENSTSCA-YTINKNV-NSFRLNVVNS-----VFSAELMAIL 159
+I ++ + +TDGS + A Y +V N RL + S V++AEL AI
Sbjct: 54 SIERQFRAPVRLYTDGSGYQGGIGAAVYPTYPSVQNESRLCNMGSDDDATVYAAELRAIE 113
Query: 160 LCLQNLKY-----------LPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVA 208
+ L+ ++Y L ++ TD+ ++L+AI + + + S L L
Sbjct: 114 MALEVIQYQFTSNDDWRERLAERGAVIFTDNQAALKAIQNPKMPSGQVYLEGSLRL-LDW 172
Query: 209 CGK---EISFMWCPSHCGISGNEAVDVAAKNPS 238
C K ++ W P+H GI GNE VD+ AK+ +
Sbjct: 173 CSKSKIQVELRWIPAHEGIPGNEHVDMLAKSAA 205
>gi|154271075|ref|XP_001536391.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409614|gb|EDN05058.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1139
Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDL 206
+V++AEL+ IL+ L + + + TD+ ++L+A+ + +S ++L +I +
Sbjct: 862 TVYAAELLGILMGLNLILTSDRRRAAIFTDNQAALRALQNPRRSSGQSILRRIIDALERV 921
Query: 207 VACGKEISFMWCPSHCGISGNEAVDVAA 234
+ G ++ F W P+H GI GNE D A
Sbjct: 922 RSQGLQVEFYWIPAHQGIEGNELADKLA 949
>gi|321461849|gb|EFX72877.1| hypothetical protein DAPPUDRAFT_325814 [Daphnia pulex]
Length = 308
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 10/159 (6%)
Query: 116 ILCFTDGSKTEN--STSCAY---TINKNVNSFRLNVVNSVFSAELMAILLCLQ---NLKY 167
I +TDGSK+ + +T+CA +NK +++ L +S+F+AE+ AI L+ ++
Sbjct: 137 IRAYTDGSKSSSPETTTCAIFIPALNKE-HAWTLTKGSSIFTAEVTAIYQALKLFYDMDD 195
Query: 168 LPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGN 227
P + S + ++ N ++ I L + G W PSH GI GN
Sbjct: 196 CPPEAIIYSDSSSAITAISSNSLSENEAITAIREIIASLKSSGTRTRLTWIPSHTGIEGN 255
Query: 228 EAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQS 266
E D A + ++ S+ K ++ I++ NW +
Sbjct: 256 ERADRLAATECNTQDGEEVHSSLSPKEMV-SIIRANWAT 293
>gi|393702210|gb|AFN16297.1| Tvingi protein [Trypanosoma vivax]
Length = 1752
Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats.
Identities = 54/214 (25%), Positives = 94/214 (43%), Gaps = 19/214 (8%)
Query: 46 PLLMRAREITDFIANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFL 105
P+ +R ++ + IDS E P+D + W+ V + + G K + +V +
Sbjct: 904 PIHVRLAKVQHLYSTIDSPE-KPHDATVLQWARRV-HFNITTPGGLKADAPEKDKKVHTM 961
Query: 106 VNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAI- 158
+ +TDGS + +S A + R VV + AE +A+
Sbjct: 962 RRVQRFSDFDYQVWTDGSVVLDVSSGAGALVYPKEGRREKVVLGAGSLACSYRAECVAME 1021
Query: 159 -----LLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGK 211
L+ + L T+ + TDS+S L A+ + + +A+L +I+ L +V
Sbjct: 1022 AGLKRLVDVIELSKTHRTRVVAFTDSLSLLMALNTGPAAVEDAMLRRIWDLILHIVRLRV 1081
Query: 212 EISFMWCPSHCGISGNEAVDVAAK--NPSP-SFP 242
++F + SHCG+ NEA D AA+ N P S+P
Sbjct: 1082 SVNFQFVFSHCGVPRNEAADKAAEQGNAKPQSYP 1115
>gi|270016421|gb|EFA12867.1| hypothetical protein TcasGA2_TC010719 [Tribolium castaneum]
Length = 137
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 134 TINKNVNSFRLNVVNSVFSAELMAILLCLQNL--KYLPSTKFLLVTDSMSSLQAITSKSC 191
+I+ + R+ + VF AE+ A+ +C+ + + + TDS +SL+ + S
Sbjct: 6 SIHSDGTGSRVYICKLVFQAEISALAICVMRCMQGAMSHRRIRICTDSHASLRTLQSSRY 65
Query: 192 NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSP 239
L+ + ++ +L KE+ P HCG+ GNE + A+ S
Sbjct: 66 TLRLVWEYHTRIQELAERNKEVVLYCIPGHCGLEGNEVANALARRGSE 113
>gi|242825810|ref|XP_002488515.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712333|gb|EED11759.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 488
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 28/187 (14%)
Query: 117 LCFTDGSKTENSTSCAYTI---NKNVNSFRLNVVN-----SVFSAELM----AILLCL-- 162
+ ++D +N A + N+N+ R + S+ AEL+ AI L L
Sbjct: 163 VVYSDALGHDNHLGAAAVVLDRNQNIVVSRKMAIGPMAHWSIHIAELIGVYYAISLALKI 222
Query: 163 -----QNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISF 215
Q+ + +++DS S++QAI + + ++ I + +L + G +
Sbjct: 223 FHQNGQSTRPGAGEAITILSDSKSAIQAIKNPRNTSGQRVIEAINQSAYELDSRGIPLRL 282
Query: 216 MWCPSHCGISGNEAVDVAAK---NPSPSFPPLKLCS-ASDYKPLIKKIVQRNWQSSWNSV 271
W P HC GN+A D AK P+ P C S K I++ + + W+ W +
Sbjct: 283 QWIPGHCDDPGNDAADCLAKAAVGPTKIHP---FCRPVSREKAAIRRQILKEWEDEWKTS 339
Query: 272 PNGNKLK 278
G L+
Sbjct: 340 NKGTHLR 346
>gi|343418078|emb|CCD19849.1| reverse transcriptase (RNA-dependent DNA polymerase) [Trypanosoma
vivax Y486]
Length = 1156
Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats.
Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 19/214 (8%)
Query: 46 PLLMRAREITDFIANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFL 105
P+ +R ++ + IDS E P+D + W+ V + + G K + +VQ +
Sbjct: 721 PIHVRLAKVQHLYSIIDSPE-KPHDATVLQWARRV-HFNITTPGGLKADAPEKDKKVQTM 778
Query: 106 VNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAI- 158
+TDGS + +S A + R VV + AE +A+
Sbjct: 779 RRAQRFSDFDYQVWTDGSVVLDVSSGAGALVYPKEGRREKVVLGAGSLACSYRAECVAME 838
Query: 159 -----LLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGK 211
L+ + L T+ + TDS+S L A+ + + +A+L +I+ L +V
Sbjct: 839 AGLKRLVEVMELSKTHRTRVVAFTDSLSLLMALNTGPAAVEDAILRRIWDLILHIVRLRV 898
Query: 212 EISFMWCPSHCGISGNEAVDVAAK--NPSP-SFP 242
++F + SHCG+ NEA D AA+ N P S+P
Sbjct: 899 SVNFQFVFSHCGVPRNEAADKAAEQGNAKPQSYP 932
>gi|110815940|sp|Q77373.3|POL_HV1AN RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1435
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMAILL LQ+ K + +VTDS +L I+S+ + S I ++ + ++
Sbjct: 1063 AELMAILLALQDSKETVN----IVTDSQYALGVISSQPTQSE--SPIVQQIIEELTKKEQ 1116
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 1117 VYLTWVPAHKGIGGNEKID 1135
>gi|321456607|gb|EFX67710.1| hypothetical protein DAPPUDRAFT_261174 [Daphnia pulex]
Length = 268
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 10/160 (6%)
Query: 116 ILCFTDGSKTEN--STSCAY---TINKNVNSFRLNVVNSVFSAELMAILLCLQ---NLKY 167
I +TDGSK+ + +T+CA +NK +++ L +S+F+AE+ AI L+ ++
Sbjct: 94 IRAYTDGSKSSSPETTTCAIFIPALNKE-HAWTLTKGSSIFTAEVTAIYQALKLFYDMDD 152
Query: 168 LPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGN 227
P + S + ++ N ++ I L + G W PSH GI GN
Sbjct: 153 CPPEAIIYSDSSSAITAISSNSLSENEAITAIREIIASLKSSGTRTRLTWIPSHTGIEGN 212
Query: 228 EAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSS 267
E D A + ++ ++ K ++ I++ NW SS
Sbjct: 213 ERTDRLAATECNTQDGEEVHNSLSPKEMV-SIIRANWASS 251
>gi|442759667|gb|JAA71992.1| Putative outcast ele5 orf1 -h 1e-40 -j 4 [Ixodes ricinus]
Length = 116
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
KEI+ W PS GI GNE D A + L +DYK +KK + WQ WN
Sbjct: 24 KEITLCWVPSRVGIPGNEDADRVASSAKDRQVDLHKIPYTDYKHALKKSTKCRWQEEWNR 83
Query: 271 VPNGNKL 277
N NKL
Sbjct: 84 EMN-NKL 89
>gi|358376063|dbj|GAA92634.1| hypothetical protein AKAW_10748 [Aspergillus kawachii IFO 4308]
Length = 399
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 199 IYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK---NPSPSFPPLKLCSASDYKPL 255
I+ + +L A G + W P HCG GNE D AK P L S K
Sbjct: 174 IHQSAAELKARGIPLRLQWVPGHCGNPGNETADRLAKEAVGAEKKHPFQHLLSRE--KAF 231
Query: 256 IKKIVQRNWQSSWNSVPNGNKLK 278
I+ ++ W+ W + NG L+
Sbjct: 232 IRNTIKSEWEQEWKTSKNGGHLR 254
>gi|343422987|emb|CCD18309.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 441
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 16/204 (7%)
Query: 46 PLLMRAREITDFIANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFL 105
P+ +R ++ + IDS E P+D + W+ V + + G K + +V +
Sbjct: 240 PIHVRLAKVQHLYSIIDSPE-KPHDATVLQWARRV-HFNITTPGGLKADAPEKDKKVHTM 297
Query: 106 VNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAIL 159
+ +TDGS + +S A + + R VV + AE +A+
Sbjct: 298 RRVQRFRDFDYQVWTDGSVVLDVSSGAGALVYPKDGRREKVVLGAGSLACSYRAECVAME 357
Query: 160 LCLQNLKYLPS------TKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGK 211
L+ L + T+ + TDS+S L A+ + + +A+L +I L +V
Sbjct: 358 AGLKRLVKVIELSKTNRTRVVAFTDSLSLLMALNTGPAAVEDAILRRICDLILHIVRLRV 417
Query: 212 EISFMWCPSHCGISGNEAVDVAAK 235
++F + SHCG+ NEA D AA+
Sbjct: 418 SVNFQFVFSHCGVPRNEAADKAAE 441
>gi|154272341|ref|XP_001537023.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409010|gb|EDN04466.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1765
Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDL 206
+V++AEL+ I + L + + + TD+ ++L+A+ + +S ++L +I +
Sbjct: 1488 TVYAAELLGIHMGLNLILASDRRRAAIFTDNQAALKALQNPRRSSGQSILRRIIDALDRV 1547
Query: 207 VACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
A G ++ F W P+H GI GNE D AK +
Sbjct: 1548 RAQGLQVEFYWIPAHQGIEGNELADNLAKEAT 1579
>gi|992561|gb|AAA99879.1| pol polyprotein, partial [Human immunodeficiency virus 1]
Length = 1027
Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMAILL LQ+ K + +VTDS +L I+S+ + S I ++ + ++
Sbjct: 646 AELMAILLALQDSKETVN----IVTDSQYALGVISSQPTQSE--SPIVQQIIEELTKKEQ 699
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 700 VYLTWVPAHKGIGGNEKID 718
>gi|51599140|gb|AAU08224.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K K +VTDS L I+S+ + S I ++ + ++
Sbjct: 628 AELMAVLLALQDSK----EKVNIVTDSQYVLGIISSQPTQSE--SPIVQQIIEELTNKEQ 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 682 VYLTWVPAHKGIGGNEKID 700
>gi|154284199|ref|XP_001542895.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411075|gb|EDN06463.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1776
Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDL 206
+V++AEL+ I + L + + + TD+ ++L+A+ + +S ++L +I +
Sbjct: 1499 TVYAAELLGIHMGLNLILASDRRRAAIFTDNQAALKALQNPRRSSGQSILRRIIDALDRV 1558
Query: 207 VACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
A G ++ F W P+H GI GNE D AK +
Sbjct: 1559 RAQGLQVEFYWIPAHQGIEGNELADNLAKEAT 1590
>gi|358376556|dbj|GAA93101.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 922
Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 32/163 (19%)
Query: 119 FTDGSKTENST-SCAYTINKNVNSFRLNVVN-------SVFSAELMAIL----LCLQNLK 166
F+D S +N + A +N ++ + V+ SV++AELMAI L LQ +
Sbjct: 630 FSDASGQQNHLGAAAVALNGDLQASEWRQVSIGSMEHWSVYAAELMAIFYAISLVLQVTQ 689
Query: 167 YLPSTK------FLLVTDSMSSLQAITSKSCNNA--LLSKIYSTWLDLVACGKEISFMWC 218
S +++DSMS+LQAI + S + + I ++ A G I W
Sbjct: 690 KRQSQSDKVEHPATILSDSMSALQAIRNPSNRSGQRTIRAILQAASEMKARGIPIRLQWV 749
Query: 219 PSHCGISGNEAVDVAAKN---PSPSFPPLKLCSASDYKPLIKK 258
P HC GN+ D AK PS P ++PL+ +
Sbjct: 750 PGHCNDPGNDEADRLAKEAVGPSKMHP---------FQPLLSR 783
>gi|331245769|ref|XP_003335520.1| hypothetical protein PGTG_16963 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1463
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 23/165 (13%)
Query: 98 SVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTI---NKNVNSFRLNVVNSV--FS 152
++ V+ +++ ++ +L F+DGS I + +S+ L S+
Sbjct: 1138 AITSVKSIISCHSTNPRSLLIFSDGSFHPEKGGAGAAICPSERVFSSYNLGGNTSISNHE 1197
Query: 153 AELMAILLCLQNLKYLPST----KFLLVTDSMSSLQAITSKSCN-------NALLSKIYS 201
+E +L L+ +L ST ++ D+ Q + S++ N + KI S
Sbjct: 1198 SEAAGVLAALELANHLCSTLDRSNIMIFMDN----QGVISRTKNPRSPKPGQWIFEKIDS 1253
Query: 202 TWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP--SPSFPPL 244
+ + L+ G ISF+WCP H I GNE D A+ SPS PPL
Sbjct: 1254 S-ISLLPEGLGISFVWCPGHVNIPGNEMADQLAREALESPSAPPL 1297
>gi|37935931|gb|AAO47173.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMAILL LQ+ K + +VTDS +L I+S+ + S I ++ + ++
Sbjct: 629 AELMAILLALQDSK----EQVNIVTDSQYALGIISSQPTQSD--SPIVQQIIEELTKKEQ 682
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 683 VYLTWVPAHKGIGGNEKID 701
>gi|37935841|gb|AAO47094.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K K +VTDS L I+S+ + S I ++ + ++
Sbjct: 628 AELMAVLLALQDSK----EKVNIVTDSQYVLGIISSQPTQSE--SPIVQQIIEELTKKEQ 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 682 VYLTWVPAHKGIGGNEQID 700
>gi|37935851|gb|AAO47103.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K K +VTDS L I+S+ + S I ++ + ++
Sbjct: 630 AELMAVLLALQDSK----EKVNIVTDSQYVLGIISSQPTQSE--SPIVQQIIEELTKKEQ 683
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 684 VYLTWVPAHKGIGGNEKID 702
>gi|306478249|gb|ADM89499.1| pol protein [Human immunodeficiency virus 1]
Length = 710
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ S Y NK + EL AILL LQ+ + +V
Sbjct: 303 YVDGAANRESKLGKAGYVTNKGRQKAVSLTDTTNQQTELQAILLALQD----SGVEVNIV 358
Query: 177 TDSMSSL---QAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L QAI KS + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 359 TDSQYALGIIQAIPDKS-ESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 411
>gi|440484572|gb|ELQ64628.1| LOW QUALITY PROTEIN: hypothetical protein OOW_P131scaffold00595g3
[Magnaporthe oryzae P131]
Length = 482
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 12/128 (9%)
Query: 150 VFSAELMAILLCLQNLKYLPSTKFLLVTDSMS---SLQAITSKSCNNALLSKIYSTWLDL 206
VF AE + L L+ P + DS S L+ S S A + + + +L
Sbjct: 73 VFDAETVGALRGLEAADANPGDTIWVCVDSASVIWGLRGSASLSSQWAYI-RFHELVEEL 131
Query: 207 VACGKEISFMWCPSHCGISGNEA----VDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQ- 261
G + WCP H GI GNE D AK P+ + P + + S + ++K +
Sbjct: 132 KDTGVSVRIRWCPGHEGIEGNEKADRLADEGAKGPADTDPRTQGATVSGIRSELRKAARE 191
Query: 262 ---RNWQS 266
R WQ+
Sbjct: 192 ASARCWQA 199
>gi|343413150|emb|CCD21406.1| reverse transcriptase (RNA-dependent DNA polymerase) [Trypanosoma
vivax Y486]
Length = 573
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 17/141 (12%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAILLCLQNLKYL---- 168
+TDGS + +S A + R VV + AE +A+ L+ L +
Sbjct: 209 WTDGSVVLDGSSGAGALVYPKEGRREKVVLGAGSLACSYRAECVAMEAGLKRLVEVIELS 268
Query: 169 --PSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGI 224
T+ + TDS+S L A+ + + +A+L +I+ L +V ++F + SHCG+
Sbjct: 269 KTHRTRVVAFTDSLSLLMALNTGPAAVEDAILRRIWDLILHIVRLRVSVNFQFVFSHCGV 328
Query: 225 SGNEAVDVAAK--NPSP-SFP 242
NEA D AA+ N P S+P
Sbjct: 329 PRNEAADKAAEQGNAKPQSYP 349
>gi|307194212|gb|EFN76629.1| hypothetical protein EAI_07164 [Harpegnathos saltator]
Length = 110
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 142 FRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS---KSCNNALLSK 198
+ L+ NSVF AE AIL L + K ++ +DS+S L S K + L+
Sbjct: 13 YHLSDFNSVFEAESFAILHTLVAISDSNCKKAVIASDSLSVLTFFNSPDIKGKYHPLVYM 72
Query: 199 IYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK 235
+ +L I+F+W P H I GNEAVD+ AK
Sbjct: 73 MRDIIHNLYLQNITIAFIWIPEHHNIPGNEAVDLLAK 109
>gi|343413268|emb|CCD21365.1| reverse transcriptase (RNA-dependent DNA polymerase) [Trypanosoma
vivax Y486]
Length = 602
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 26/210 (12%)
Query: 46 PLLMRAREITDFIANIDSSEFAPYDKHIPPWS-----SVVPSIDTSLHSGKKDNVSPSVF 100
P+ +R ++ + IDS E P+D + W+ ++ S + +KD ++
Sbjct: 180 PIHVRLAKVQHLCSTIDSPE-KPHDAQVLQWARRVHFNITTSCGLKADAPEKDKKVRTMR 238
Query: 101 QVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAE 154
+VQ + + + +TDGS +S A + R VV + AE
Sbjct: 239 RVQRFSDFDYQ------VWTDGSVVLGVSSGAGALVYPKEGRREKVVLGAGSLACSYRAE 292
Query: 155 LMAILLCLQ------NLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDL 206
+A+ L+ L T+ + T S+S L A+ + +A+L +I+ L
Sbjct: 293 CVAMEAGLRRLVDVIELSKAHRTRVVAFTASLSLLMALNTCPAVVEDAILGRIWDRILCF 352
Query: 207 VACGKEISFMWCPSHCGISGNEAVDVAAKN 236
V ++F + SHCG+ NEA D AA+
Sbjct: 353 VLLRVPVNFQFVFSHCGVPRNEAADKAAEQ 382
>gi|156036082|ref|XP_001586152.1| hypothetical protein SS1G_12727 [Sclerotinia sclerotiorum 1980]
gi|154698135|gb|EDN97873.1| hypothetical protein SS1G_12727 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 341
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 69/181 (38%), Gaps = 28/181 (15%)
Query: 116 ILCFTDGSKTE---NSTSCAYTINK-----NVNSFRLNVVNSVFSAELMAILLCLQNLKY 167
I F+DGSK+E +T + I + SF L VF AE MA +
Sbjct: 76 IQIFSDGSKSESKDGATGGGFVITQFDIQVAQYSFSLGTNAEVFDAEAMAAVTGTAKALA 135
Query: 168 LPSTKFLLVTDSMSSLQ----AITSKSCNNALLSKIYSTWLDL------------VACGK 211
LPS K L TD L A+ S N ++ +L L + GK
Sbjct: 136 LPSIK--LATDLWIFLDNYEVALRLGSHFNGSSQAVFEDFLKLKQAWAARPRLPHIPPGK 193
Query: 212 EISFMWCPSHCGISGNEAVDVAAKNPSP-SFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
I W P H I NE D A K + PP C+ + K LI+ + WN+
Sbjct: 194 -IRIHWVPGHLNIPDNEIADKATKEGAKLPPPPNPACTLASLKRLIRSKTNKADNQLWNT 252
Query: 271 V 271
V
Sbjct: 253 V 253
>gi|242827513|ref|XP_002488845.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
gi|218712006|gb|EED11435.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
Length = 1139
Score = 46.2 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 150 VFSAELMAILLCLQNLK-YLPST--KFLLVTDSMSSLQAITSKSCNNA--LLSKIYSTWL 204
+F A +A L QN + P T +++DS S+LQAI + S + ++ I +
Sbjct: 863 IFYAISLAFRLSHQNKQPSRPGTGEMITILSDSKSALQAIRNPSNKSGQRVIQAINQSAY 922
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCS-ASDYKPLIKKIVQRN 263
+L + G + W P HC GN+A D AK C S K I+K + +
Sbjct: 923 ELDSRGISLRLQWIPGHCDDPGNDAADHLAKTAVGLDKTHPFCRPVSREKAAIRKQILKE 982
Query: 264 WQSSWNSVPNGNKLK 278
W+ W + G L+
Sbjct: 983 WEDEWKASRKGAHLR 997
>gi|37935861|gb|AAO47112.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 46.2 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K K +VTDS L I+S+ + S I ++ + ++
Sbjct: 628 AELMAVLLALQDSK----EKVNIVTDSQYVLGIISSQPTQSD--SPIVQQIIEELTKKEQ 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 682 VYLTWVPAHKGIGGNEKID 700
>gi|343474808|emb|CCD13634.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 357
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAI------LLCLQNLK 166
+TDGS + +S A + R VV + AE +A+ L+ + L
Sbjct: 15 WTDGSVVLDVSSGAGALVYPKEGRRERVVLGAGSLARSYRAECVAMEAWLKRLVDVIELN 74
Query: 167 YLPSTKFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGI 224
T+ + TDS+S L A+++ +A+L +++ L LV ++F + SHCG+
Sbjct: 75 QTHRTRVVAFTDSLSLLMALSTGPAVVEDAILRRVWDLILQLVRLRVSVNFQFVFSHCGV 134
Query: 225 SGNEAVDVAAK--NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTYR 281
NEA D A+ N P P + +D +++ V+ + G L+T+R
Sbjct: 135 PRNEAADKEAEQGNAKPQMYPAWI---TDIVAAVERQVR---NEMYKDFEEGRMLRTHR 187
>gi|343471017|emb|CCD16461.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 797
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAILLCLQ------NLK 166
+TDGS + +S A + R VV + AE +A+ L+ L
Sbjct: 448 WTDGSVVLDVSSGAGALVYPKEGRREKVVLGAGSLACSYRAECVAMEAGLKRLVDVIELN 507
Query: 167 YLPSTKFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGI 224
T+ + TDS+S L A+++ +A+L +I+ L LV ++F + SHCG+
Sbjct: 508 QTHRTRVVAFTDSLSLLMALSTGPAVVEDAILRRIWDLILRLVRLRVSVNFQFVFSHCGV 567
Query: 225 SGNEAVDVAAK--NPSPSFPP 243
NEA D AA+ N P P
Sbjct: 568 PRNEAADKAAEQGNAKPQMYP 588
>gi|427783969|gb|JAA57436.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 278
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 113 HDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTK 172
H R + +TD K N++ SV +AE AI L +++ +Y +
Sbjct: 23 HHRDVYYTDACKIAKDKYTVVATNQSSTITATVRTASVSTAESAAIALAIRDAEY-KTQD 81
Query: 173 FLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDV 232
L+++DS S+ + + + + + +KI ++ + + +WCP+H G+ GNE D
Sbjct: 82 ALVISDSQSACRQYLTGAVSK-ITAKILGPHIE-----QYHAVIWCPAHAGLEGNERADG 135
Query: 233 AAKNPSPSFP 242
A+ S P
Sbjct: 136 IARGISIRAP 145
>gi|427783949|gb|JAA57426.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 279
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 113 HDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTK 172
H R + +TD K N++ SV +AE AI L +++++Y +
Sbjct: 23 HHRDVYYTDACKIAKDKYTVVATNQSSTITATVRTASVNTAESAAIALAIRDVEY-KTQD 81
Query: 173 FLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDV 232
L+++DS S+ + + + + +KI T ++ + + + CP+H G+ GNE D
Sbjct: 82 ALVISDSQSACRQYLTGAVSKITTAKILGTHIE-----QYHAVISCPAHAGLEGNEKADG 136
Query: 233 AAKNPSPSFP 242
A+ S P
Sbjct: 137 IARGISIRAP 146
>gi|427779633|gb|JAA55268.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 534
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 166 KYLPSTKFLLVTDSMSSLQAITS---KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHC 222
+++P + + +DS ++LQ I S + N L++ I V I + W P HC
Sbjct: 297 QWIPGHXWSIFSDSKAALQCIMSPFRRGPNEQLVADIRILHHRAVEKQHNIVYQWIPGHC 356
Query: 223 GISGNEAVDVAAKNPS-----PSFPPLKLCSASDYKPLIKKIVQRNWQSS 267
GI GN+ D AA++ + P + +A+ + L +++ W S+
Sbjct: 357 GIYGNDRADEAARSAHDALHCAAIPLSRTDAATRLRSLARELTLAQWHST 406
>gi|377561779|ref|ZP_09791212.1| hypothetical protein GOOTI_214_00030 [Gordonia otitidis NBRC
100426]
gi|377521047|dbj|GAB36377.1| hypothetical protein GOOTI_214_00030 [Gordonia otitidis NBRC
100426]
Length = 276
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 144 LNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSC-----NNALLSK 198
L V+S+ AEL AI + L+ LK +TK L+VTDS+ S + I +S LL++
Sbjct: 159 LESVHSINDAELEAIEMALRTLK---ATKLLIVTDSLVSARWIRGESTPASSRTGRLLTR 215
Query: 199 IYSTWLDLVACGKEISFMWCPSHCGISGNE 228
I+ +A +E+S W H G NE
Sbjct: 216 IHR-----LAADREVSVEWIKGHAGDPLNE 240
>gi|339507403|gb|AEJ81113.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 119 FTDGS--KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + S Y NK + EL AILL LQ+ + +V
Sbjct: 537 YVDGAANRETKSGKAGYVTNKGRQKVVPLTDTTNQKTELQAILLALQD----SGLEVNIV 592
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 593 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 645
>gi|342183968|emb|CCC93449.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 418
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 17/145 (11%)
Query: 147 VNSVFSAELMAILLCLQNLKY----LPSTKFLLVTDSMSSLQAITSKSCNNALLSK--IY 200
V+S + AE +A+LL L L + L+VTDS S L A++ + ++ I+
Sbjct: 28 VSSSYRAESVAMLLALDRLVMPMADVKHKTLLIVTDSQSLLNALSKGPLSQCDYTEDVIW 87
Query: 201 STWLDLVACGKEISFMWCPSHCGISGNEAVDVAA----KNPSPSFPPLKLCSASDYKPLI 256
+ ++L G I F +C SHCG+ NE D A +N + +K D + LI
Sbjct: 88 TRLIELTLQGWLIHFQFCHSHCGVVVNEMADEYATQCMENGHFTELSVKPLWHKDLEALI 147
Query: 257 KKIVQRNWQSSWNSVPNGNKLKTYR 281
+ +++ W +S ++ TYR
Sbjct: 148 TRQLKKRWLASL-------RVDTYR 165
>gi|154283453|ref|XP_001542522.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410702|gb|EDN06090.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1683
Score = 45.8 bits (107), Expect = 0.020, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDL 206
+V++AEL+ I + L + + + TD+ ++L+A+ + +S ++L +I +
Sbjct: 1474 TVYAAELLGIHMGLNLILASDRRRAAIFTDNQAALKALQNPRRSSGQSILRRIIDALDRV 1533
Query: 207 VACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
+ G ++ F W P+H GI GNE D AK +
Sbjct: 1534 RSQGLQVEFYWIPAHQGIEGNELADNLAKEAT 1565
>gi|154280491|ref|XP_001541058.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411237|gb|EDN06625.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1765
Score = 45.8 bits (107), Expect = 0.020, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDL 206
+V++AEL+ I + L + + + TD+ ++L+A+ + +S ++L +I +
Sbjct: 1488 TVYAAELLGIHMGLNLILASDRRRAAIFTDNQAALKALQNPRRSSGQSILRRIIDALDRV 1547
Query: 207 VACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
+ G ++ F W P+H GI GNE D AK +
Sbjct: 1548 RSQGLQVEFYWIPAHQGIEGNELADNLAKEAT 1579
>gi|51599131|gb|AAU08216.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.8 bits (107), Expect = 0.020, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMAILL LQ+ K + +VTDS +L I+S+ + S I ++ + +
Sbjct: 626 AELMAILLALQDSKKTVN----IVTDSQYALGIISSQPTQSE--SPIVQQIIEELTKKDQ 679
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 680 VYLAWVPAHKGIGGNEKID 698
>gi|343472747|emb|CCD15173.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 474
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAILLCLQ------NLK 166
+TDGS + +S A + R VV + AE +A+ L+ L
Sbjct: 115 WTDGSVVLDVSSGAGALVYPKEGRREKVVLGAGSLARSYRAECVAMEAGLKRLVDVIELN 174
Query: 167 YLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGI 224
T+ + TDS+S L A+ + +A+L +I+ L LV ++F + SHCG+
Sbjct: 175 QTHRTRVVAFTDSLSLLMALGTGPSVVEDAILRRIWDLTLRLVRLRVSVNFQFVFSHCGV 234
Query: 225 SGNEAVDVAAK--NPSPSFPP 243
NEA D AA+ N P P
Sbjct: 235 PRNEAADKAAEQGNAKPQMYP 255
>gi|310791578|gb|EFQ27105.1| hypothetical protein GLRG_02276 [Glomerella graminicola M1.001]
Length = 227
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 140 NSFRLNVVNSVFSAELMAILLCLQNLKYLPS--------TKFLLVTDSMSSLQAITSKSC 191
+F+L AEL A++ L+ L T F DS+ +L A +K+
Sbjct: 80 RAFQLLACRDSREAELFAVVTGLETAALLAHLMPELRRVTVFTDCQDSIHTLMAAAAKA- 138
Query: 192 NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
++ L+ + + ++LVA G + WCP H I GNE + A+
Sbjct: 139 SDPLVKRAVAASVELVARGVRVLVRWCPGHVAIEGNEKANGLARE 183
>gi|343417815|emb|CCD19921.1| reverse transcriptase (RNA-dependent DNA polymerase) [Trypanosoma
vivax Y486]
Length = 404
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 17/141 (12%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAI------LLCLQNLK 166
+TDGS + +S A + R VV + AE +A+ L+ + L
Sbjct: 15 WTDGSVVLDVSSGAGALVYTKEGRREKVVLGAGSLACSYRAECVAMEAGLKRLVDVMELS 74
Query: 167 YLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGI 224
T+ + TDS+S L A+ + + +A+L +I+ L +V ++F + SHCG+
Sbjct: 75 KTHRTRVVAFTDSLSLLMALNTGPAAVEDAILRRIWDLILHIVRLRVSVNFQFVFSHCGV 134
Query: 225 SGNEAVDVAAK--NPSP-SFP 242
NEA D AA+ N P S+P
Sbjct: 135 PRNEAADKAAEQGNAKPQSYP 155
>gi|343418949|emb|CCD19553.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 416
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 18/192 (9%)
Query: 68 PYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTEN 127
P+D + W+ V D + G K + +P +V + + +TDGS +
Sbjct: 7 PHDATVLQWARRV-HFDITTPGGLKAD-APEKDKVHNMRRVQRFRGFDYRVWTDGSVVLD 64
Query: 128 STSCAYTINKNVNSFRLNVVNSV------FSAELMAILLCLQ------NLKYLPSTKFLL 175
+S A + +S R VV + AE +A+ L+ L T+ +
Sbjct: 65 VSSGAGAMVVPKDSRREKVVLGAESLACSYRAECVAMEAGLKRLVDVIELSKTRRTRVVA 124
Query: 176 VTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVA 233
TDS+S L+A+ + + +A+ +I L +V ++F + SHCG+ NEA D A
Sbjct: 125 FTDSLSLLKALGAGPAAVEDAMPRRILDLILHIVRLRVSVNFQFVFSHCGVPRNEAADKA 184
Query: 234 AK--NPSPSFPP 243
A+ N P P
Sbjct: 185 AEQGNAKPQLYP 196
>gi|242775769|ref|XP_002478706.1| hypothetical protein TSTA_089820 [Talaromyces stipitatus ATCC
10500]
gi|218722325|gb|EED21743.1| hypothetical protein TSTA_089820 [Talaromyces stipitatus ATCC
10500]
Length = 317
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 15/142 (10%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVV-------NSVFSAELMAILLCLQ-NLKYLPS 170
++DGS+ + + A + V V + VF AELM + L+ L+ P
Sbjct: 159 WSDGSRLDTGRAGAGVALQAVPGGPWEHVEVPMGHGHEVFDAELMGVATALEWALERQPL 218
Query: 171 TKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
+ D+ +++ + T + AL+ + + L + ++ W P H G+ GNE
Sbjct: 219 GPIWVFLDAQNAIDRLRSTRPAPGQALVLRAHRAVEKLAMRDQLVTIQWVPGHSGVVGNE 278
Query: 229 AVDVAAKNP-----SPSFPPLK 245
D AAK +P F L+
Sbjct: 279 QTDQAAKRAASKPTAPGFEQLQ 300
>gi|343475433|emb|CCD13168.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 587
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 171 TKFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
T+ + TDS+S L A+++ +A+L +I+ L LV ++F + SHCG+ NE
Sbjct: 315 TRVVAFTDSLSLLMALSTGPAVVEDAILRRIWDLILRLVRLRVSVNFQFGFSHCGVPRNE 374
Query: 229 AVDVAAK--NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTYR 281
A D AA+ N P P + ++ + ++ + G L+T+R
Sbjct: 375 AADKAAERGNAKPQMYPAWITD------IVTGVERQVRNEMYKDFEEGRMLRTHR 423
>gi|343423153|emb|CCD18256.1| hypothetical protein, conserved (fragment) [Trypanosoma vivax Y486]
Length = 473
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 16/207 (7%)
Query: 46 PLLMRAREITDFIANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFL 105
P+ +R ++ + IDS E P+D + W+ V + + G K + +V +
Sbjct: 180 PIHVRLAKVQHLYSIIDSPE-KPHDATVLQWARRV-HFNITTPGGLKADAPEKDKKVHTM 237
Query: 106 VNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAI- 158
+ +TDGS + +S A + + R VV + AE +A+
Sbjct: 238 RRVQRFRDFDYQVWTDGSVVLDVSSGAGALVYPKDGRREKVVLGAGSLACSYRAECVAME 297
Query: 159 -----LLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGK 211
L+ + L T+ + TDS+S L A+ + + +A+L +I+ L +V
Sbjct: 298 AGLKRLVEVMELSKTHRTRGVAFTDSLSLLMALNTGPAAVEDAILRRIWDLILHIVRLRV 357
Query: 212 EISFMWCPSHCGISGNEAVDVAAKNPS 238
++F + SH G+ NEA D AA+ S
Sbjct: 358 FVNFQFVLSHFGVPRNEAADNAAEQGS 384
>gi|343415575|emb|CCD20623.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 1752
Score = 45.4 bits (106), Expect = 0.025, Method: Composition-based stats.
Identities = 57/219 (26%), Positives = 101/219 (46%), Gaps = 29/219 (13%)
Query: 46 PLLMRAREITDFIANIDSSEFAPYDKHIPPWSSVVP-SIDT----SLHSGKKDNVSPSVF 100
P+ +R ++ + IDS E P+D + W+ V +I T + + +KD ++
Sbjct: 904 PIHVRLAKVQHLYSIIDSPE-KPHDATVLQWARRVHFNITTPGGLNADAPEKDKKVHTMR 962
Query: 101 QVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAE 154
+VQ + + + +TDGS + +S A + R VV + AE
Sbjct: 963 RVQRFSDFDYQ------VWTDGSVMLDVSSGAGALVYPKEGRREKVVLGAGSLACSYRAE 1016
Query: 155 LMAI------LLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDL 206
+A+ L+ + L T+ + TDS+S L A+ + + +A+L +I+ L +
Sbjct: 1017 CVAMEAGLKRLVEVIELSKTHRTRVVAFTDSLSLLMALNTGPAAVEDAILRRIWDLILHI 1076
Query: 207 VACGKEISFMWCPSHCGISGNEAVDVAAK--NPSP-SFP 242
V ++F + SHCG+ NEA D AA+ N P S+P
Sbjct: 1077 VRLRVSVNFQFVFSHCGVPRNEAADKAAEQGNAKPQSYP 1115
>gi|37935911|gb|AAO47155.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 45.4 bits (106), Expect = 0.026, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+L+ LQ+ K K +VTDS L I+S+ + S I ++ + ++
Sbjct: 628 AELMAVLVALQDSK----EKVNIVTDSQYVLGIISSQPTQSE--SPIVQQIIEELTKKEQ 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 682 VYLTWVPAHKGIGGNEKID 700
>gi|427791921|gb|JAA61412.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 993
Score = 45.4 bits (106), Expect = 0.026, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 74 PPWSSVVPSIDTSLHSGKKDN--VSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSC 131
PPW P + ++ +K SP++ Q+ L+ ++ +Y D + +TDGS T ++
Sbjct: 876 PPWCLDQPKLRVTVPGIRKKTELSSPALKQLSLLM-LHEEYKDHVKLYTDGSTTAKGSAG 934
Query: 132 AYTINKNVNS--FRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS 188
A V + FR + + +AEL A+ L+ ++ K+ + TDS S+LQ ++S
Sbjct: 935 AVNFPAKVEAYHFRTSHRTTSTAAELAALRSALRWIELESPQKWGIFTDSKSALQCLSS 993
>gi|170040414|ref|XP_001847995.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167863953|gb|EDS27336.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 362
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 8/164 (4%)
Query: 78 SVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINK 137
V P++D L + K N V + ++T+Y++R FTD SK+ + C +
Sbjct: 137 QVCPTMDL-LTTTYKTNTDGQVLKHLAEYLLSTEYYNRPRIFTDASKSSDG-RCGIGVFD 194
Query: 138 NVNSFR----LNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNN 193
+ R L + S+ +AE +AI + +Q++ +L+TDS + KS N+
Sbjct: 195 EQSGTRIMMQLKLGTSISTAETLAIQVAMQHIDKRGIQNAVLLTDS-QPVCLFLKKSRNS 253
Query: 194 ALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP 237
+ + + + L+ A + W P H + GNE D A+
Sbjct: 254 RMRNSVANDILE-KAKRNRTTIQWIPGHVQVDGNETADGLARQA 296
>gi|427791897|gb|JAA61400.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 998
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 12/166 (7%)
Query: 113 HDRILCFTDGSKTENSTSCAYT-INKN-----VNSFRLNVVNSVFSAELMAILLCLQNLK 166
H +TDGS N A+ N N + F L+ + + AE++A + +
Sbjct: 730 HPATHVYTDGSYLHNIAGAAFVAFNHNSSLITLRKFHLHNATTAYDAEILAFAEAIHFIL 789
Query: 167 YLPSTK-FLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGIS 225
P K L TD +S L + S + ++ L I I P+H GI+
Sbjct: 790 ISPLKKPVHLYTDCLSILMRLASTNDSDTRLINIKHQLHKCYLQHIPIHLFHVPAHTGIT 849
Query: 226 GNEAVDVAAKNPSPSFPPLKLCSASDYK-PLIKKIVQRNWQSSWNS 270
GNE D AA S L +S + P I+K Q + W+S
Sbjct: 850 GNEVADTAASCARTS----GLIRSSKHTLPHIRKQFQTTLKLQWHS 891
>gi|425775771|gb|EKV14023.1| hypothetical protein PDIG_35060 [Penicillium digitatum PHI26]
Length = 648
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 56/135 (41%), Gaps = 24/135 (17%)
Query: 116 ILCFTDGSKT--ENSTSCAYTINKNVNSFRLN----VVNS---VFSAELMAILLCLQNLK 166
I F+DGS+ E Y VN +++ +NS VF AE + L+
Sbjct: 357 ICVFSDGSEQWQEGIKYVGYGFVLMVNGTQIDTGAGAINSRSHVFDAEAIGAWRGLERAI 416
Query: 167 YL--PSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE-----ISFMWCP 219
+ P +K L DS S + I + N+ S W +AC + IS W P
Sbjct: 417 AVAPPRSKIWLCIDSTSVIWCIRGNASNS-------SQWA-FLACHRAMEQHNISLRWAP 468
Query: 220 SHCGISGNEAVDVAA 234
H GI GNEA D A
Sbjct: 469 GHTGIEGNEAADTLA 483
>gi|344311687|gb|AEN04366.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 66/168 (39%), Gaps = 28/168 (16%)
Query: 73 IPPWSSV--VPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + K+ V F V N TK G T+
Sbjct: 411 IPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETK------IGKAGYVTDKGRQ 464
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK- 189
T+N+ N AEL AI L LQ+ ++ +VTDS +L I ++
Sbjct: 465 KIVTLNETTNQ----------KAELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQP 510
Query: 190 -SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
+ L+S+I ++ + + + W P+H GI GNE VD N
Sbjct: 511 DKSESELVSQI----IEQLIKKERVYLSWVPAHKGIGGNEQVDKLVSN 554
>gi|393702208|gb|AFN16296.1| Tcoingi protein [Trypanosoma congolense]
Length = 1751
Score = 45.4 bits (106), Expect = 0.029, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 171 TKFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
T+ + TDS+S L A+++ +A+L +I+ L LV ++F + SHCG+ NE
Sbjct: 1039 TRVVAFTDSLSLLMALSTGPAVVEDAILRRIWDLILRLVRLRVSVNFQFVFSHCGVPRNE 1098
Query: 229 AVDVAAK--NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTYR 281
A D AA+ N P P + ++ + ++ + S G L+T+R
Sbjct: 1099 AADKAAEQGNAKPQMYPAWVTD------IVTGVERQVRNEMYRSFEEGRMLRTHR 1147
>gi|37221450|gb|AAQ89854.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AILL LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQD----SGLEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKVYLTWVPAHKGIGGNEQVD 648
>gi|425779742|gb|EKV17778.1| hypothetical protein PDIG_13540 [Penicillium digitatum PHI26]
Length = 699
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 56/135 (41%), Gaps = 24/135 (17%)
Query: 116 ILCFTDGSKT--ENSTSCAYTINKNVNSFRLN----VVNS---VFSAELMAILLCLQNLK 166
I F+DGS+ E Y VN +++ +NS VF AE + L+
Sbjct: 408 ICVFSDGSEQWQEGIKYVGYGFVLMVNGTQIDTGAGAINSRSHVFDAEAIGAWRGLERAI 467
Query: 167 YL--PSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE-----ISFMWCP 219
+ P +K L DS S + I + N+ S W +AC + IS W P
Sbjct: 468 AVAPPRSKIWLCIDSTSVIWCIRGNASNS-------SQWA-FLACHRAMEQHNISLRWAP 519
Query: 220 SHCGISGNEAVDVAA 234
H GI GNEA D A
Sbjct: 520 GHTGIEGNEAADTLA 534
>gi|170778877|gb|ACB36838.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGS--KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ K S Y +K + EL AI L LQ+ + +V
Sbjct: 441 YVDGAANKETKSGKAGYVTDKGRQKVXSLTDTTNQKTELQAIYLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEIVSQIIEQLINKEKVYLAWVPAHKGIGGNEQVD 549
>gi|344311732|gb|AEN04388.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AILL LQ+ K +VTDS +L I ++ + L+++I ++ +
Sbjct: 477 AELQAILLALQD----SEVKVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLINK 528
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
+ I W P+H GI GNE VD N
Sbjct: 529 ERIYMSWVPAHKGIGGNEQVDKLVSN 554
>gi|343416753|emb|CCD20257.1| reverse transcriptase (RNA-dependent DNA polymerase) [Trypanosoma
vivax Y486]
Length = 875
Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 28/223 (12%)
Query: 46 PLLMRAREITDFIANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGK-----KDNVSPSVF 100
P+ +R + + IDS+E P+D + W+ V T+L S K KD ++
Sbjct: 478 PIYIRLANVQHLYSIIDSTE-KPHDAKVLQWARRVHFNATALGSLKADAPEKDKKVHTMR 536
Query: 101 QVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTI------NKNVNSFRLNVVNSVFSAE 154
+VQ + + + + DGS + +S A + + V + AE
Sbjct: 537 RVQRFSDFDYQ------VWADGSVVLSVSSGAGALVYPKDGRREVAVLGAGSLACSHRAE 590
Query: 155 LMAI------LLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDL 206
+A+ L+ + L P T+ TDS+S A+++ + + A+L +I+ L +
Sbjct: 591 CVAMEAGLNRLVDVIELSKTPRTRVPAFTDSLSLSMALSAGHEVVDGAMLRRIWDLSLHI 650
Query: 207 VACGKEISFMWCPSHCGISGNEAVDVAAK--NPSPSFPPLKLC 247
V ++F + +HCG+ NEA AA+ N P P +C
Sbjct: 651 VRLRASVNFQFVFAHCGVPRNEAAYKAAERGNTKPQSYPAWIC 693
>gi|37935941|gb|AAO47182.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMAILL LQ+ K + +VTDS +L I+S+ + S + ++ + ++
Sbjct: 630 AELMAILLALQDSKETVN----IVTDSQYALGIISSQPTQSD--SPLVQQIIEELTKKEQ 683
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 684 VYLAWVPAHKGIGGNEKID 702
>gi|427792931|gb|JAA61917.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1403
Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 116 ILCFTDGSKTEN----STSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLP-S 170
+L FTDGS ++ + +C RL S +AEL + L +L P
Sbjct: 1127 LLVFTDGSVRDSPRSAAAACVIPSTGTTIRCRLPFHASSTAAELAGLHLAADHLAATPPQ 1186
Query: 171 TKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
++ DS +LQA+ ++ +++ + A G +S W PSH GI+GNE
Sbjct: 1187 LPVAILCDSRPALQALLQPDQAGITVALLHAKLTAIGASGVHLSLHWLPSHVGIAGNE 1244
>gi|71018711|ref|XP_759586.1| hypothetical protein UM03439.1 [Ustilago maydis 521]
gi|46099344|gb|EAK84577.1| predicted protein [Ustilago maydis 521]
Length = 183
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 208 ACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSF--PPLKLCSASDYKPLIKKIVQRNWQ 265
A K ++ +W HCGI GNE D A+N + + + + I++ V + W
Sbjct: 64 AVAKHVAVVWVTGHCGILGNERADSLAQNAADDVIRESAEHHEEAVVQLAIRRRVMQAWN 123
Query: 266 SSWNSVPNGNKLKT 279
+WNS P G+ ++
Sbjct: 124 QAWNSSPKGSNFRS 137
>gi|427792977|gb|JAA61940.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1311
Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 6/143 (4%)
Query: 116 ILCFTDGSKTEN----STSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLP-S 170
+L FTDGS ++ + +C RL S +AEL + L +L P
Sbjct: 1035 LLVFTDGSVRDSPRSAAAACVIPSTGTTIRCRLPFHASSTAAELAGLHLAADHLAATPPQ 1094
Query: 171 TKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAV 230
++ DS +LQA+ ++ +++ + A G +S W PSH GI+GNE
Sbjct: 1095 LPVAILCDSRPALQALLQPDQAGITVALLHAKLTAIGASGVHLSLHWLPSHVGIAGNEEA 1154
Query: 231 DVAAKNPSPSFPPL-KLCSASDY 252
D AAK P+ K + SDY
Sbjct: 1155 DAAAKAAHHGDTPVTKAVAQSDY 1177
>gi|343472501|emb|CCD15357.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 472
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 171 TKFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
T+ + +TDS+ L A+++ +A+L +I+ L LV ++F + SHCG+ NE
Sbjct: 260 TRVVALTDSLLLLVALSTGPAVVEDAILRRIWDLILRLVRLRVSVNFQFVFSHCGVPRNE 319
Query: 229 AVDVAAK--NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTYR 281
A D AA+ N P P + ++ + ++ + S G L+T+R
Sbjct: 320 AADKAAEQGNAKPQMYPAWVTD------IVTGVERQVRNEMYRSFEEGRMLRTHR 368
>gi|338224345|gb|AEI88055.1| pol-like protein [Scylla paramamosain]
Length = 87
Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 149 SVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDL 206
S EL+AILL L++ ++ +L TDS + LQA+ S N L++ + L
Sbjct: 9 STLQTELVAILLALKHAQHRRERTVVLHTDSRTGLQALQQPYPSDNVGLVTATLGSLQSL 68
Query: 207 VACGKEISFMWCPSHCGI 224
A G+ + W PSH G+
Sbjct: 69 AAQGRRVRLNWIPSHVGV 86
>gi|407915859|gb|EKG09366.1| Reverse transcriptase, partial [Macrophomina phaseolina MS6]
Length = 1113
Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 149 SVFSAELMAILLCLQNLK---YLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTW 203
+VF+AEL +++ L+ + K + TD+ ++L+A+ + + LLS I +
Sbjct: 990 TVFAAELQGLVMALELAEAEMVHGKRKIAVFTDNQAALRALVTPGEQSGQYLLSSIIAKL 1049
Query: 204 LDLVACGKEISFMWCPSHCGISGNEAVDVAAK 235
L G + F W P+H G+ GNE D AK
Sbjct: 1050 TGLQQKGASVGFHWIPAHQGVPGNEEADKLAK 1081
>gi|289187203|gb|ADC92181.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + AEL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVFPLTDTTNQKAELQAIYLALQD----SGVEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I S ++ + +++ W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQID 648
>gi|156056264|ref|XP_001594056.1| hypothetical protein SS1G_05484 [Sclerotinia sclerotiorum 1980]
gi|154703268|gb|EDO03007.1| hypothetical protein SS1G_05484 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1584
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 68/185 (36%), Gaps = 36/185 (19%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK++ + N+ KY + I +TD S T
Sbjct: 1232 YFPPWKKEVPYRVNISKLGKEE--------AAMIHNLAFKYRCKNTITIYTDASSTLEGI 1283
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
S TIN VN V++ EL+ + ++ NL P K
Sbjct: 1284 GVGIGIVVILPNGRISYQETINIGVNQL-------VYNGELLGVTKAIEYANLIAQPGNK 1336
Query: 173 FLLVTDSMSSLQAIT--SKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAV 230
F + +D+ + L + S S + K + G EIS W P H + GNE
Sbjct: 1337 FKIYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNKGAEISLNWVPGHTSVQGNELA 1396
Query: 231 DVAAK 235
D AK
Sbjct: 1397 DSLAK 1401
>gi|327458241|gb|AEA76560.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AILL LQ+ + +V
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAILLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEVVSQIIEELIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|327458239|gb|AEA76559.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AILL LQ+ + +V
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAILLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEVVSQIIEELIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|242825554|ref|XP_002488465.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712283|gb|EED11709.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 327
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 80/206 (38%), Gaps = 19/206 (9%)
Query: 74 PPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENS-TSCA 132
PPWS+ P G F + + + ++ I+ ++D SK EN T
Sbjct: 10 PPWSTKEPREAALRRVGAPSGRIREEAADNFQILLQSIPNNDIIIYSDESKLENGQTGGG 69
Query: 133 YTINKNVNSFRLNVVNSVFSAELMA-ILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSC 191
Y + + F L + +A+ + +CL NL+ L++ S+ S QA+
Sbjct: 70 YVGFQAGSQFLLKAAMTHSTAQCSPNLWICLDNLE----VAIQLLSLSIGSSQAVFES-- 123
Query: 192 NNALLSKIYSTW-----LDLVACGKEISFMWCPSHCGISGNEAVDVAAK-NPSPSFPPLK 245
+ + +TW L + G + W P H I GNEA D AAK + P
Sbjct: 124 ----FNTLAATWPSRRRLLQIESGA-VRIRWVPGHANIPGNEAADCAAKEGAGKTVPTSH 178
Query: 246 LCSASDYKPLIKKIVQRNWQSSWNSV 271
S + +K K Q+ W S
Sbjct: 179 PWSYTAFKRHTKSQAASRAQTYWQSA 204
>gi|212530056|ref|XP_002145185.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
gi|210074583|gb|EEA28670.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
Length = 425
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 126 ENSTSCAY-TINKNVNSFRLNVVNSVFSAELMAILLCLQNL--KYLPSTKFLLVTDSMSS 182
E T C + TI+ ++ ++ VF AEL+ + L+ ++LP + L + +
Sbjct: 2 EGITYCTHGTISSILDITLVSSGFKVFDAELVGVASALEWALGRHLPGPIYRLQSTEPGA 61
Query: 183 LQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS---- 238
Q++ AL + + ++ L L G+ ++ W P H GI GNE D AAK +
Sbjct: 62 GQSL-------ALRAHMAASRLRL--SGRPVTIQWVPGHNGIEGNEQADQAAKRAASKPA 112
Query: 239 -PSFPPLKLCSASDYKPLIKKIVQRNW 264
P F L L ++ NW
Sbjct: 113 RPGFEGLSLAYVRRACTEARRAAVENW 139
>gi|358376848|dbj|GAA93341.1| transposon I factor, partial [Aspergillus kawachii IFO 4308]
Length = 595
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 17/145 (11%)
Query: 149 SVFSAELMAIL--------LCLQNLK--YLPSTKFLLVTDSMSSLQAIT--SKSCNNALL 196
SV +AEL+ IL + LQ + + +++DSMS+L AI ++
Sbjct: 324 SVHAAELIGILYAINLINRIVLQQRRAGQKRARTVTILSDSMSALLAIQKPGNKSGQQII 383
Query: 197 SKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN---PSPSFPPLKLCSASDYK 253
I + G I W P H I GN+ D AK P + P L S +
Sbjct: 384 YAILQAAKNTRTHGVTIRLQWVPGHSEILGNDTADRLAKEAAIPGKTHPFSPLLSRE--R 441
Query: 254 PLIKKIVQRNWQSSWNSVPNGNKLK 278
I++ + W+ W +G L+
Sbjct: 442 AYIRQGILTQWEKEWKESRDGGHLR 466
>gi|343473910|emb|CCD14323.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1405
Score = 44.7 bits (104), Expect = 0.040, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 171 TKFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
T+ + TDS+S L A+++ +A+L +I+ L LV ++F + SHCG+ NE
Sbjct: 693 TRVVAFTDSLSLLMALSTGPAVVEDAILRRIWDLILRLVRLRVSVNFQFVFSHCGVPRNE 752
Query: 229 AVDVAAK--NPSPSFPP 243
A D AA+ N P P
Sbjct: 753 AADKAAEQGNAKPQMYP 769
>gi|289187228|gb|ADC92193.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AILL LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAILLALQD----SGVEANIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDRSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|343470259|emb|CCD16992.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1106
Score = 44.7 bits (104), Expect = 0.041, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAILLCLQ------NLK 166
+TDGS + +S A + R VV + AE +A++ L+ L
Sbjct: 975 WTDGSVVLDVSSGAGVLVYRKQGRREKVVLGAGSLACSYRAECVAMVAGLKRLVDVIELN 1034
Query: 167 YLPSTKFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGI 224
T+ + TDS+S L A+++ +A+L +I+ L LV ++F + SHCG+
Sbjct: 1035 QTHRTRVVAFTDSLSLLMALSTGPAVVEDAILRRIWDLILRLVRLRVSVNFQFVFSHCGV 1094
Query: 225 SGNEAVDVAAK 235
NEA D AAK
Sbjct: 1095 PRNEAADKAAK 1105
>gi|348558346|ref|XP_003464979.1| PREDICTED: ribonuclease H1-like [Cavia porcellus]
Length = 294
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 19/142 (13%)
Query: 114 DRILCFTDGSKTENSTSCA-------YTINKNVN-SFRLNVVNSVFSAELMAILLCLQNL 165
D ++ +TDG + N A + +N RL + AE+ A ++
Sbjct: 136 DSVVVYTDGCCSSNGRRRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 195
Query: 166 KYLPSTKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYSTWLDLVACGKEIS 214
K +K +L TDSM ++ ITS S +++K L+ +A G +I
Sbjct: 196 KAQDISKLVLYTDSMFTINGITSWVPGWKKNGWRTSTGKEVINKEDFERLEQLAEGMDIQ 255
Query: 215 FMWCPSHCGISGNEAVDVAAKN 236
+M P H G +GNE D A+
Sbjct: 256 WMHIPGHSGFTGNEEADRLARE 277
>gi|343428557|emb|CBQ72087.1| related to Reverse transcriptase [Sporisorium reilianum SRZ2]
Length = 2266
Score = 44.7 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 38/194 (19%)
Query: 111 KYHDRILCFTDGSKTENSTSCA------YTINKNVNSFRLNVV-NSVFSAELMAILLCLQ 163
++ D L +TDGS+ ++ T + +S LN + N +F AEL AI L+
Sbjct: 1935 EHADATLVYTDGSRLDSGVGFGCYVTGLLTGQPHASSQGLNPLHNDIFEAELSAITAGLR 1994
Query: 164 NLKYLPSTK-----------FLLVTDSMSSLQAIT----------SKSCNNALLSKIYST 202
LP K + TDS SSLQ + + C A++ I T
Sbjct: 1995 AC--LPDAKGDAPPPSSLPPIYIFTDSASSLQRLNCPWSQDRRAGQRRC--AIIRTIVHT 2050
Query: 203 WLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPL---IKKI 259
L L C + F+W P H G++GNE D A+ + + + ++ P+ I++
Sbjct: 2051 LLRL-GC-PSVHFVWVPGHVGVAGNELADRLARRGA-ALQNQATDATANLGPVRARIREA 2107
Query: 260 VQRNWQSSWNSVPN 273
Q Q+ WN P+
Sbjct: 2108 SQALRQTRWNKEPS 2121
>gi|288187817|gb|ADC42396.1| pol protein [Human immunodeficiency virus 1]
Length = 673
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + AEL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKIGKAGYVTNKGRQKVVTLTDTTNQKAELQAIYLALQD----SGVEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQID 648
>gi|37935908|gb|AAP42148.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.7 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K + +VTDS +L I+S+ + S I ++ + +
Sbjct: 628 AELMAVLLALQDSKEXVN----IVTDSQYALGIISSQPTQSE--SPIVQQIIEELTRKER 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 682 VYLAWVPAHKGIGGNEKID 700
>gi|242779688|ref|XP_002479439.1| hypothetical protein TSTA_023400 [Talaromyces stipitatus ATCC
10500]
gi|218719586|gb|EED19005.1| hypothetical protein TSTA_023400 [Talaromyces stipitatus ATCC
10500]
Length = 153
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 195 LLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
+L I W +L + G +++ W P+H GI GNE D+AAK +
Sbjct: 7 ILGSIAEKWDELRSQGVQVTIHWIPAHQGIEGNERADIAAKEAT 50
>gi|444892692|gb|AGE13501.1| pol protein, partial [Human immunodeficiency virus]
Length = 1008
Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL L++ K K +VTDS L I+S+ + S I ++ + ++
Sbjct: 627 AELMAVLLALKDSK----EKVNIVTDSQYVLGIISSQPTQSE--SPIVQQIIEELTRKEQ 680
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 681 VYLAWVPAHKGIGGNEKID 699
>gi|339507228|gb|AEJ81026.1| pol protein [Human immunodeficiency virus 1]
Length = 626
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AILL LQ+ + +V
Sbjct: 507 YVDGAANRETKLGKAGYVTNKGRQKVVSITDTTNQKTELQAILLALQD----SGLEVNIV 562
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAA 234
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 563 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVDKLV 618
Query: 235 KN 236
N
Sbjct: 619 SN 620
>gi|288187801|gb|ADC42389.1| pol protein [Human immunodeficiency virus 1]
Length = 672
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQD----SGVEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I +K + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAKPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|289186966|gb|ADC92063.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + + Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQD----SGAEVNIV 595
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + K++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKKKVYLAWVPAHKGIGGNEQVD 648
>gi|13095191|gb|AAK12174.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y +K + EL AI L LQ+ P + +V
Sbjct: 443 YVDGAANRETKLGKAGYVTDKGRQKVVSITDTTDQKTELQAIHLALQD----PGLEVNIV 498
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 499 TDSQYALGIIQAQPDQSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 551
>gi|400595699|gb|EJP63491.1| reverse transcriptase [Beauveria bassiana ARSEF 2860]
Length = 560
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 10/140 (7%)
Query: 105 LVNINTKYHDRILCFTDGSKTENSTSC-AYTINKNVNSFRLNVVN----SVFSAELMAIL 159
L + + R++ ++DGSKTE T+ Y + + VF AE+ +
Sbjct: 265 LGALQAEIQTRLVVYSDGSKTEQDTAGFGYAVYRRQQLIAQGCGQIGRSEVFDAEIKGAV 324
Query: 160 LCLQNL--KYLPSTKFLLVTDSMSSLQAI-TSKSCNNALLSKIYSTWLDLVACGKEISFM 216
L+ P + D+ S + I T+ ++ + +++ D A I
Sbjct: 325 EGLRAALAHQRPKEGITVCIDNTSVIDCIGTTAPPSSQMAFRMFQKTGD--AHPGMIRVR 382
Query: 217 WCPSHCGISGNEAVDVAAKN 236
WCP H GI GNE D AK
Sbjct: 383 WCPGHTGIEGNELADQLAKE 402
>gi|339507270|gb|AEJ81047.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + ++
Sbjct: 573 TELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEK 626
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 627 VYLAWVPAHKGIGGNEQVD 645
>gi|289187244|gb|ADC92201.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + + Y NK + EL AI L LQ+ T+ +V
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQD----SGTEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQID 648
>gi|289186942|gb|ADC92051.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + + Y NK + EL AI L LQ+ K +V
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQD----SGAKVNIV 595
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|339507362|gb|AEJ81093.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGS--KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + S Y NK + EL AI L LQ+ ++ +V
Sbjct: 537 YVDGAANRETKSGKAGYVTNKGRQKVITLTDTTNQKTELQAIHLALQD----SGSEVNIV 592
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + + + W P+H GI GNE VD
Sbjct: 593 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEXVYLAWVPAHKGIGGNEQVD 645
>gi|327458365|gb|AEA76622.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ ++ +VTDS +L I ++ + S+I S ++ + + +
Sbjct: 478 ELQAILLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVSKIIEQLINKEXV 531
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 532 YLTWVPAHKGIGGNEKVD 549
>gi|339507525|gb|AEJ81174.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AILL LQ+ ++ +V
Sbjct: 537 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAILLALQD----SGSEVNIV 592
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I + + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 593 TDSQYALGIIQAHPDKSE--SEVVSQIIEQLIKKEKVYLAWVPAHKGIGGNEKVD 645
>gi|284192193|gb|ADB82816.1| pol protein [Simian immunodeficiency virus]
Length = 578
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENSTS--CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ S Y + S + + AEL A+L+ L++ K +V
Sbjct: 282 YVDGAANRESREGKAGYISERGKTSVKALENTTNQKAELTAVLMALED----SGEKVNIV 337
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS L +T + + + ++ KI + + +E+ W P+H G+ GNE +D
Sbjct: 338 TDSQYVLNILTEQPTTTEHEIVEKI----IQQLQKKQEVYLQWVPAHKGMGGNEQID 390
>gi|542601|pir||S37765 hypothetical protein - fruit fly (Drosophila miranda) transposon
TRIM
Length = 426
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 119 FTDGSKTENSTSCA-YTINKNV-NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+TDGSK + Y + + FRL SVF AE+ AI + + L L+
Sbjct: 149 YTDGSKLDGRVGGGVYCSELEISHCFRLPDHCSVFQAEIEAIKEAISIVSKLRLDTHLVC 208
Query: 177 --TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAA 234
+DS ++++A+ S S N+A + + L +A ++ +W P H I GN+A D A
Sbjct: 209 VFSDSQAAIKALGSISSNSATVKDCRRS-LHEIAEQLDLFLIWVPGHRDIEGNDAADELA 267
Query: 235 KNPSPSFP----------PLKLCSASDYKPLIKKIVQRNWQSS 267
+ + + P PL C ++ L ++ R WQ +
Sbjct: 268 RQGT-TIPLLSEREQVAMPLATCRLLTHE-LFEQNANRRWQQT 308
>gi|443700141|gb|ELT99252.1| hypothetical protein CAPTEDRAFT_193728 [Capitella teleta]
Length = 337
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 212 EISFMWCPSHCGISGNEAVDVAAK 235
++SF+W PSHCGI GNEA D AK
Sbjct: 43 DVSFLWIPSHCGIQGNEAADALAK 66
>gi|162568710|gb|ABY19378.1| reverse transcriptase [Paracoccidioides brasiliensis]
Length = 553
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 97/279 (34%), Gaps = 55/279 (19%)
Query: 1 MPLSLR---RSKMIMNYVSKIGSCHRN----PIHNEFFNRNYDFA--------NHP---- 41
+ L+LR R + + + I + HR P+ NR FA HP
Sbjct: 70 LDLALRDALRGALPVYKTTPISALHRELEIMPMKETLDNRRAVFAVRIKKLDKRHPLVRR 129
Query: 42 ----NTPKPLLMRAREITDFIANIDSSEFAPYDKHI-PPWSSVVPSIDTSLHSGKKDNVS 96
T KP R + I++ YD + PPW D L G +
Sbjct: 130 SNKVATTKPYTTRLSRASSHAGGIEA-----YDPLLTPPWMRFPRKED--LQIGYVAGRT 182
Query: 97 PSVFQVQFLVNINTKYHDRILCFTDGSKTEN---STSCAYTINKNVNSFRLNVVN----- 148
F + + ++ FTDGS+ E+ +T + I ++ N
Sbjct: 183 KEQAAQDFKSWLQQRNPLDLVVFTDGSQIEHPQRATGAGWAICWGSEHRLISTGNLPMDK 242
Query: 149 -SVFSAELMAILLCLQNLKYLPSTKF----------LLVTDSMSSLQAITSKSCNNALLS 197
VF AE MA L L+ P KF L V ++ S+ +S+ L
Sbjct: 243 AEVFDAEAMAALQGLKEATTSPQAKFASNVYICLDNLEVARALGSVPNTSSQQVFAQFLK 302
Query: 198 KIYSTWLDL----VACGKEISFMWCPSHCGISGNEAVDV 232
I W +A + W P H G++GNE D+
Sbjct: 303 AI-KAWQSRDRLPLATQSRVVIRWVPGHAGVAGNEKADL 340
>gi|37221508|gb|AAQ89882.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AILL LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVPLTDTTNQKTELQAILLALQD----SGLEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|331251935|ref|XP_003338548.1| hypothetical protein PGTG_20180 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 431
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 20/176 (11%)
Query: 73 IPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGS----KTENS 128
+PPW + I +LH K+++V + Q N ++ FTDGS K +
Sbjct: 227 VPPWIEPITEIQ-NLHD-KREDVIHRIPQQLQQEQQNRA----LIIFTDGSWILDKGAGA 280
Query: 129 TSCAYTINKNVNSFRLNVVNSV--FSAELMAILLCLQNLKYLPSTKFLLVTDSMSSL--- 183
+ A+ + ++ + +N +S+ F AEL I L + K D+++
Sbjct: 281 AAVAHPLGASIVA-SINPADSISNFEAELTGIKLATELAKQAIEADHSHEIDTVAIFCDN 339
Query: 184 QAITSKSCNNALLSKIYSTWLD----LVACGKEISFMWCPSHCGISGNEAVDVAAK 235
Q + S + LS + D + G+++ WCP H GI NEA D AK
Sbjct: 340 QGALTLSADPLSLSPGQHLYTDNFFSMRFLGRQVKLYWCPGHEGIKANEAADALAK 395
>gi|1335691|emb|CAA41925.1| unnamed protein product [Drosophila miranda]
Length = 521
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 119 FTDGSKTENSTSCA-YTINKNV-NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+TDGSK + Y + + FRL SVF AE+ AI + + L L+
Sbjct: 244 YTDGSKLDGRVGGGVYCSELEISHCFRLPDHCSVFQAEIEAIKEAISIVSKLRLDTHLVC 303
Query: 177 --TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAA 234
+DS ++++A+ S S N+A + + L +A ++ +W P H I GN+A D A
Sbjct: 304 VFSDSQAAIKALGSISSNSATVKDCRRS-LHEIAEQLDLFLIWVPGHRDIEGNDAADELA 362
Query: 235 KNPSPSFP----------PLKLCSASDYKPLIKKIVQRNWQSS 267
+ + + P PL C ++ L ++ R WQ +
Sbjct: 363 RQGT-TIPLLSEREQVAMPLATCRLLTHE-LFEQNANRRWQQT 403
>gi|444892702|gb|AGE13510.1| pol protein, partial [Human immunodeficiency virus]
Length = 1009
Score = 44.3 bits (103), Expect = 0.056, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K + +VTDS +L I+S+ + S I ++ + +
Sbjct: 628 AELMAMLLALQDSKETVN----IVTDSQYTLGIISSQPTQSE--SPIVQQIIEELTKKDK 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 682 VYLTWVPAHKGIGGNEKID 700
>gi|289187372|gb|ADC92264.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGS--KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + S Y NK + EL AI L LQ+ + +V
Sbjct: 441 YVDGAANRETKSGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQD----SGAEVNIV 496
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE +D
Sbjct: 497 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQID 549
>gi|255964745|gb|ACU44666.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.3 bits (103), Expect = 0.059, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K + +VTDS L I+S+ + S I ++ + ++
Sbjct: 628 AELMAVLLALQDSKETVN----IVTDSQYVLGIISSQPTQSD--SPIVQQIIEELTKKEQ 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 682 VYLAWVPAHKGIGGNEKID 700
>gi|255984016|gb|ACU46080.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ S ++ + ++I
Sbjct: 577 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIXKEKI 630
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 631 YLAWVPAHKGIGGNEQVD 648
>gi|885629|gb|AAC55694.1| reverse transcriptase, partial [Human immunodeficiency virus 1]
Length = 560
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ ++ +V
Sbjct: 441 YVDGAANRETKLGRAGYVTNKGRQKVVTLTDTTNQRTELQAIHLALQD----SGSEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|289186920|gb|ADC92041.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + + Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAASRETRLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQD----SGAEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|427792937|gb|JAA61920.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1319
Score = 44.3 bits (103), Expect = 0.062, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 9/127 (7%)
Query: 111 KYHDRIL----CFTDGSKTEN----STSCAYTINKNVNSFRLNVVNSVFSAELMAILLCL 162
K H+R+ FTDGS ++ + +C RL S +AEL + L
Sbjct: 1034 KLHERLRGHLSVFTDGSVRDSPRSAAAACVIPSTGTTIRCRLPFHASSTAAELAGLHLAA 1093
Query: 163 QNLKYLP-STKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSH 221
+L P ++ DS +LQA+ ++ +++ + A G +S W PSH
Sbjct: 1094 DHLAATPPQLPVAILCDSRPALQALLQPDQAGITVALLHAKLTAIGASGVHLSLHWLPSH 1153
Query: 222 CGISGNE 228
GI+GNE
Sbjct: 1154 VGIAGNE 1160
>gi|289187382|gb|ADC92269.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVITLTDTTNQKTELEAIHLALQD----SGVEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + SKI S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSE--SKIVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|288187682|gb|ADC42332.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVF--SAELMAILLCLQNLKYLPSTKFL 174
+ DG+ + Y NK R+ +N AEL AI L LQ+ +
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQ--RVVTLNDTTNQQAELQAIYLALQD----SGGEVN 593
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+VTDS +L I ++ + S++ S ++ + +++ W P+H GI GNE +D
Sbjct: 594 IVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIQKEKVYLAWVPAHKGIGGNEQID 648
>gi|242786282|ref|XP_002480775.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218720922|gb|EED20341.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 882
Score = 44.3 bits (103), Expect = 0.064, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AELM + L+ L+ P ++ D+ +++ + T + AL+ + +
Sbjct: 591 HEVFDAELMGVATALEWALERQPLGPIWVLLDAQNAIDRLKSTRPAPGQALVLRAHRAVE 650
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAA-----KNPSPSFPPLKL 246
L G+ ++ W P H G+ GNE D AA K +P F L L
Sbjct: 651 KLAMRGQPVTIQWVPGHSGVVGNEQADQAAKRAASKQTAPGFEHLSL 697
>gi|37935970|gb|AAO47208.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 44.3 bits (103), Expect = 0.064, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMAILL L++ K + +VTDS +L I+S+ + S I ++ + ++
Sbjct: 628 AELMAILLALKDSKETVN----IVTDSQFALGIISSQPTQSD--SPIVQQIIEELTKKEQ 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 682 VYLAWVPAHKGIGGNEKID 700
>gi|339507399|gb|AEJ81111.1| pol protein [Human immunodeficiency virus 1]
Length = 523
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 441 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 494
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 495 YLAWVPAHKGIGGNEQVD 512
>gi|14091538|gb|AAK53788.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + + Y NK + EL AILL LQ+ ++ +V
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQRVVSLTETTNQKTELHAILLALQD----SGSEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ + ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDRSE--SEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQVD 549
>gi|13569319|gb|AAK31054.1|AF286234_2 truncated pol polyprotein [Human immunodeficiency virus 1]
Length = 816
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ S Y ++ + AEL AI L LQ+ +K +
Sbjct: 599 YVDGAANRESKIGKAGYITDRGRQKIITLAETTNQKAELQAIQLALQD----SGSKVNIA 654
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFM-WCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I + GKE ++ W P+H GI GNE VD
Sbjct: 655 TDSQYALGIIQAQPDKSESELVSQIIEQLI-----GKERVYLSWVPAHKGIGGNEQVD 707
>gi|167832887|gb|ACA02029.1| pol protein [Human immunodeficiency virus 1]
Length = 715
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ ++ Y +K + AEL AI L LQ+ ++ +V
Sbjct: 592 YVDGAANRDTKLGKAGYVTDKGRQKIVSLAETTNQKAELQAIQLALQD----SGSEVNIV 647
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + + I W P+H GI GNE VD
Sbjct: 648 TDSQYALGIIQAQPDKSE--SELVSQIIEELIKKERIYLSWVPAHKGIGGNEQVD 700
>gi|159031793|dbj|BAF91868.1| polyprotein [Human immunodeficiency virus 1]
Length = 515
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ T+ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 441 ELQAIYLALQD----SGTEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 492
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 493 KVYMAWVPAHKGIGGNEKVD 512
>gi|14091502|gb|AAK53770.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + + Y NK + EL AILL LQ+ ++ +V
Sbjct: 441 YVDGAASRETKLGKAGYVTNKGRQRVVSLTETTNQKTELHAILLALQD----SGSEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ + ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDRSE--SEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQVD 549
>gi|226348730|gb|ACO50684.1| pol protein [Human immunodeficiency virus 1]
Length = 725
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AILL LQ+ + LVTDS +L I ++ + L+S+I ++ + +
Sbjct: 411 ELQAILLALQD----SGLEVNLVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 462
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 463 KVYLTWVPAHKGIGGNEQVD 482
>gi|288187634|gb|ADC42309.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDG--SKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG S+ S Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAASRETKSGKAGYVTNKGRQKVVTLNDTTNQKTELQAIHLALQD----SGAEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I S+ + S++ S ++ + +++ W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQSQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQID 648
>gi|255984032|gb|ACU46088.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ S ++ + ++I
Sbjct: 577 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIQKEKI 630
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 631 YLAWVPAHKGIGGNEQVD 648
>gi|37935888|gb|AAP42147.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 43.9 bits (102), Expect = 0.069, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL+AILL LQ+ K + +VTDS +L I+S+ + S I ++ + +
Sbjct: 628 AELIAILLALQDSK----KEVNIVTDSQYALGIISSQPTQSD--SPIVQQIIEEMTKKER 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 682 VYLTWVPAHKGIGGNEKID 700
>gi|339507236|gb|AEJ81030.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AILL LQ+ + +V
Sbjct: 537 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAILLALQD----SGLEVNIV 592
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 593 TDSQYALGIIQAQPDKSESELVSQI----IEQLINKEKVYLAWVPAHKGIGGNEQVD 645
>gi|288188474|gb|ADC42711.1| pol protein [Human immunodeficiency virus 1]
Length = 573
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ + +V
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQD----SGVEVNIV 496
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|288187584|gb|ADC42285.1| pol protein [Human immunodeficiency virus 1]
Length = 571
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ + +V
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQD----SGVEVNIV 496
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|255984490|gb|ACU46317.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AILL LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIQKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
+I W P+H GI GNE VD
Sbjct: 130 KIYLAWVPAHKGIGGNEQVD 149
>gi|156043751|ref|XP_001588432.1| hypothetical protein SS1G_10879 [Sclerotinia sclerotiorum 1980]
gi|154695266|gb|EDN95004.1| hypothetical protein SS1G_10879 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1486
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 60/152 (39%), Gaps = 27/152 (17%)
Query: 116 ILCFTDGSKTE---NSTSCAYTINK-NVN----SFRLNVVNSVFSAELMAILLCLQNLKY 167
I F+DGSK+E +T + I + ++ SF L VF AE MA +
Sbjct: 1237 IQIFSDGSKSESKDGATGGGFVITQFDIQVAHYSFSLGTNAEVFDAEAMAAVTRAAKALA 1296
Query: 168 LPSTKFLLVTDSMSSLQ----AITSKSCNNALLSKIYSTWLDLVAC------------GK 211
PS K L TD L A+ S N L ++ +L L GK
Sbjct: 1297 FPSIK--LATDLWIFLDNYEVALRLGSHFNGLSQAVFEDFLKLTQAWAARPRLPHIPPGK 1354
Query: 212 EISFMWCPSHCGISGNEAVDVAAKNPSPSFPP 243
I W P H I GNE D AAK + PP
Sbjct: 1355 -ICIHWVPGHLNIPGNEMADKAAKEGAKLPPP 1385
>gi|429854941|gb|ELA29922.1| hypothetical protein CGGC5_1108 [Colletotrichum gloeosporioides
Nara gc5]
Length = 336
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 153 AELMAILLCLQNLKYL----PSTKFL-LVTDSMSSLQAI--TSKSCNNALLSKIYSTWLD 205
AEL A+ L L+ YL P + + + TD +++++ S ++ L+ + +
Sbjct: 108 AELYALALGLETALYLSRAVPDLRQVNIFTDCKDAIRSLMRADASDDDPLVQRAVAASAK 167
Query: 206 LVACGKEISFMWCPSHCGISGNEAVDVAAK 235
L A G + WCP H G+ GNE D AK
Sbjct: 168 LEAKGVRTAVRWCPGHVGVEGNERADQLAK 197
>gi|339507226|gb|AEJ81025.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ ++ +V
Sbjct: 537 YVDGAANRETKLGKAGYVTNKGRQKVXSLTDTTNQKTELQAIHLALQD----SGSEVNIV 592
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
TDS +L I ++ + S+I S ++ + +++ W P+H GI GNE VD N
Sbjct: 593 TDSQYALGIIQAQPDKSE--SEIVSQIIEQLIXKEKVYLAWVPAHKGIGGNEQVDKLVSN 650
>gi|321451947|gb|EFX63450.1| hypothetical protein DAPPUDRAFT_335441 [Daphnia pulex]
Length = 316
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 116 ILCFTDGSKT--ENSTSCAY---TINKNVNSFRLNVVNSVFSAELMAILLCLQ---NLKY 167
I +TDGSK+ + +T+CA +NK + + L +S+F+AE+ AI L+ ++
Sbjct: 23 IRAYTDGSKSSSQETTTCAIFIPALNKE-HVWTLTKGSSIFTAEVTAIYQALKLFYDMDD 81
Query: 168 LPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGN 227
P + S + ++ N ++ L + G W PSH GI GN
Sbjct: 82 CPPEAIIYSDSSSAITAISSNSLSENEAITATREIIASLKSSGTRTRLTWIPSHTGIEGN 141
Query: 228 EAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
E D A + ++ ++ K ++ I++ NW
Sbjct: 142 ERADRLAATECNTQDGEEVHNSLSPKEMV-SIIRANW 177
>gi|255984752|gb|ACU46448.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AILL LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIQKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
+I W P+H GI GNE VD
Sbjct: 130 KIYLAWVPAHKGIGGNEQVD 149
>gi|289187268|gb|ADC92213.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + AEL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKAELQAIHLALQD----SGAEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQID 648
>gi|289187199|gb|ADC92179.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + + Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQD----SGAEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I S ++ + +++ W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQID 648
>gi|14041623|emb|CAC38389.1| pol [Human immunodeficiency virus 1]
Length = 1009
Score = 43.9 bits (102), Expect = 0.077, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K + +VTDS L I+S+ + S + ++ + ++
Sbjct: 628 AELMAVLLALQDSKETVN----IVTDSQYVLGIISSQPTQSE--SPLVQQIIEELTKKEQ 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 682 VYLTWVPAHKGIGGNEKID 700
>gi|339507240|gb|AEJ81032.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AILL LQ+ + +V
Sbjct: 537 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAILLALQD----SGLEVNIV 592
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 593 TDSQYALGIIQAQPDXSESELVSQI----IEQLINKEKVYLAWVPAHKGIGGNEQVD 645
>gi|400593039|gb|EJP61047.1| reverse transcriptase [Beauveria bassiana ARSEF 2860]
Length = 362
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 13/148 (8%)
Query: 137 KNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPST-----KFLLVTDSMSSLQAITSKSC 191
+ V + + +V++AEL ++L L+ L + + TD+ +++QA+ +
Sbjct: 100 RKVEYLGTSDMTTVYAAELKGLVLALRLLAEASQAGARPGRCAIFTDNQAAIQAMQNPKH 159
Query: 192 NNA--LLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSA 249
+A +L++ + G ++ W P+H A D A K+ PS P
Sbjct: 160 PSAQYILAEAIQELDKIRTEGWDVQLRWIPAHA------AKDAARKHGDPSEPTSLRTLM 213
Query: 250 SDYKPLIKKIVQRNWQSSWNSVPNGNKL 277
+ K +I K ++ W +SW +G +L
Sbjct: 214 APTKTIIHKTMRAEWAASWEMAKHGREL 241
>gi|14030518|gb|AAK52932.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 547
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGS--KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ K S Y N+ + EL AI L LQ+ + +V
Sbjct: 428 YVDGAANKESKSGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQD----SGLEVNIV 483
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 484 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 536
>gi|288187803|gb|ADC42390.1| pol protein [Human immunodeficiency virus 1]
Length = 671
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ T+ +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQD----SGTEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQID 648
>gi|327458267|gb|AEA76573.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ ++ +V
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQD----SGSEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|288187594|gb|ADC42290.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ S Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRESKVGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQD----SGVEVNIV 595
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQID 648
>gi|242825355|ref|XP_002488423.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712241|gb|EED11667.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1181
Score = 43.9 bits (102), Expect = 0.085, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWL 204
+ VF AELM + L+ L+ P ++ D+ +++ + S AL+ + +
Sbjct: 907 HEVFDAELMGVATALEWALERQPLGPIWILLDAQNAIDRLKSARPGPGQALVLRAHRAVE 966
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAA-----KNPSPSFPPLKL 246
L G+ ++ W P H G+ GNE D AA K +P F L L
Sbjct: 967 KLAMRGQPVTIQWVPGHSGVVGNEQADQAAKRAASKQTAPGFEHLSL 1013
>gi|386642402|emb|CCD41786.1| pol protein, partial [Simian immunodeficiency virus]
Length = 518
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 117 LCFTDGSKTENSTS--CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
+ + DG+ NS Y N+ + + AEL A+LL L++ K
Sbjct: 365 VYYVDGAANRNSKQGKAGYVTNRGKEKVKELEDTTNQKAELEAVLLALKD----SGPKVN 420
Query: 175 LVTDSMSSLQAITSKS--CNNALLSKIYSTWLDLVACGKEISFM-WCPSHCGISGNEAVD 231
+VTDS + ++ ++ L+++I + GKE ++ W P+H GI GNE VD
Sbjct: 421 IVTDSQYVYGILDAQPEFSDSKLVTEIINQ-----LIGKEAVYLSWVPAHKGIGGNEEVD 475
>gi|289187242|gb|ADC92200.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ S Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRESKVGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQD----SGVEVNIV 595
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQID 648
>gi|288187539|gb|ADC42264.1| pol protein [Human immunodeficiency virus 1]
Length = 571
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ + +V
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQRVVTLTDTTNQKTELQAIHLALQD----SGAEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|328880022|emb|CBY88596.1| Gag-pol polyprotein precursor [Simian immunodeficiency virus]
Length = 1443
Score = 43.9 bits (102), Expect = 0.087, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL+AI L L++ K +K +VTDS +L+ ++ + S++ ++L+ E
Sbjct: 1083 AELIAIKLALEDSK----SKVNIVTDSQYALRLLSKRPTETD--SELVKEIIELIKGKDE 1136
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GN+ +D
Sbjct: 1137 VYLSWVPAHKGIGGNQEID 1155
>gi|339507254|gb|AEJ81039.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AILL LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 574 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 625
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 626 KVYLAWVPAHKGIGGNEQVDKLVSN 650
>gi|339507220|gb|AEJ81022.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AILL LQ+ + +V
Sbjct: 537 YVDGAANRETKLGKAGYVTNKGRQKVISLTDTTNQKTELQAILLALQD----SGLEVNIV 592
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + + L+++I ++ + ++I W P+H GI GNE VD
Sbjct: 593 TDSQYALGIIQAQPDTSESELVNQI----IEQLIKKEKIYLAWVPAHKGIGGNEQVD 645
>gi|7144660|gb|AAF37326.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 564
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQN + +V
Sbjct: 431 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELKAIHLALQN----SGLEVNIV 486
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 487 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKEKVYLAWVPAHTGIGGNEQVD 539
>gi|358376861|dbj|GAA93349.1| transposon I factor [Aspergillus kawachii IFO 4308]
Length = 362
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 17/145 (11%)
Query: 149 SVFSAELMAIL--------LCLQNLKYLP--STKFLLVTDSMSSLQAIT--SKSCNNALL 196
SV +AEL+ IL + LQ + + +++DSMS+L AI ++
Sbjct: 91 SVHAAELIGILYAINLINRIVLQQRRAGQKRARTVTILSDSMSALLAIQKPGNKSGQQII 150
Query: 197 SKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN---PSPSFPPLKLCSASDYK 253
I + G I W P H I GN+ D AK P + P L S +
Sbjct: 151 YAILQAAKNTRTHGVTIRLQWVPGHSEILGNDTADRLAKEAAIPGRTHPFSPLLSRE--R 208
Query: 254 PLIKKIVQRNWQSSWNSVPNGNKLK 278
I++ + W+ W +G L+
Sbjct: 209 AYIRQGILTQWEKEWKESRDGGHLR 233
>gi|343470834|emb|CCD16585.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 660
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFS------AELMAILLCLQ------NLK 166
+TDGS + +S A + R VV S A+ +A++ L+ LK
Sbjct: 317 WTDGSVVLDVSSGAGALVFPKEGRREKVVLGAGSVACSYWAKCVAMVAGLKRLVKVIELK 376
Query: 167 YLPSTKFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGI 224
T+ + TDS+S A ++ + A+L +I+ L +V ++F + SHCG+
Sbjct: 377 RTHRTRAVAFTDSLSLRMASSTAPVVVDGAILRRIWDLILRVVRLRVSVNFQFVFSHCGV 436
Query: 225 SGNEAVDVAAK--NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTYR 281
NEA D AA+ N P P ++ ++ + ++ + S G L+T+R
Sbjct: 437 PRNEAADKAAEQGNAKPQTYPARVTD------IVTSVERQVRIEMYRSFEEGRMLRTHR 489
>gi|294890537|ref|XP_002773203.1| hypothetical protein Pmar_PMAR009197 [Perkinsus marinus ATCC 50983]
gi|239878227|gb|EER05019.1| hypothetical protein Pmar_PMAR009197 [Perkinsus marinus ATCC 50983]
Length = 164
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 15/119 (12%)
Query: 118 CFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAI-----LLCLQNLKYLPSTK 172
F S T T+C+Y ++ + S+F AEL A+ +Y PST+
Sbjct: 7 AFISVSPTGRQTACSYKLHPDC---------SIFQAELSAVDKAIAFAMATAEEYGPSTE 57
Query: 173 FLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
++++DS L+++T AL I + A G ++F W +H G+ NE +D
Sbjct: 58 VIILSDSQVVLKSLTPAK-QTALSIAIRRRYQHCEASGIYVTFAWVGAHFGVHYNERMD 115
>gi|289187327|gb|ADC92242.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGS--KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + S Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKSGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQD----SGAEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQID 648
>gi|284192167|gb|ADB82803.1| pol protein [Simian immunodeficiency virus]
Length = 743
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 12/117 (10%)
Query: 119 FTDGS--KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ +T Y +N + + AEL AI L LQ+ + +V
Sbjct: 452 YVDGAANRTSKLGKAGYITARNKSKVVALEETTNQKAELEAIKLALQD----SGPRVNIV 507
Query: 177 TDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L +T+ +N ++ +I ++L+ + + W P+H GI GNE VD
Sbjct: 508 TDSQYALGILTASPDQSDNPIVREI----IELMIGKEGVYLGWVPAHKGIGGNEQVD 560
>gi|156032633|ref|XP_001585154.1| hypothetical protein SS1G_14014 [Sclerotinia sclerotiorum 1980]
gi|154699416|gb|EDN99154.1| hypothetical protein SS1G_14014 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 322
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 74/181 (40%), Gaps = 28/181 (15%)
Query: 116 ILCFTDGSKTE---NSTSCAYTINK-----NVNSFRLNVVNSVFSAELMAILLCLQNLKY 167
I F+DGSK+E +T + I++ +SF L VF AE A +
Sbjct: 24 IQIFSDGSKSESKDGATGGGFVISQFDIQIAHHSFSLGTNAEVFDAEATAAVAGAAKALT 83
Query: 168 LPSTKFLLVTDSMSSLQ----AITSKSCNNALLSKIYSTWLDLVAC------------GK 211
L STK L TD L A+ S N +++ +L L GK
Sbjct: 84 LASTK--LATDLWIFLDNHEAALRLGSHFNGSSQRVFEDFLKLTQAWAVRPRLPHTSPGK 141
Query: 212 EISFMWCPSHCGISGNEAVDVAAKNPSP-SFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
I W P H I GNE D AAK + FP +C+ + K +I+ + + WN+
Sbjct: 142 -IRVRWVPGHLDIPGNEIADKAAKEGTKLPFPLNPICTLASLKRMIRTRANKADEQLWNT 200
Query: 271 V 271
V
Sbjct: 201 V 201
>gi|343477198|emb|CCD11910.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 601
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 22/180 (12%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAILLCLQ------NLK 166
+TDGS + +S A + R VV + AE +A+ L+ L
Sbjct: 57 WTDGSVVLDVSSGAGALVYRKQGRREKVVPGAGSVACSYRAECVAMEAGLKRLVDVIELN 116
Query: 167 YLPSTKFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGI 224
T+ + TDS+S A+++ +A+L +I+ L LV ++F + SH G+
Sbjct: 117 QTLRTRVVAFTDSLSLRMALSTGPAVVEDAILRRIWDLILRLVRLRVSVNFQFVFSHGGV 176
Query: 225 SGNEAVDVAAK--NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTYRK 282
NEA D AA+ N P P + ++ + ++ + S G L+T+R+
Sbjct: 177 PRNEAADKAAEQGNAKPQMYPAWVTD------IVTGVERQVRNEMYRSFEEGRMLRTHRR 230
>gi|302685830|ref|XP_003032595.1| hypothetical protein SCHCODRAFT_40345 [Schizophyllum commune H4-8]
gi|300106289|gb|EFI97692.1| hypothetical protein SCHCODRAFT_40345, partial [Schizophyllum
commune H4-8]
Length = 138
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 148 NSVFSAELMAILLCLQNLKYLPSTKFL----LVTDSMSSLQAITSKSCNNALLSKIYSTW 203
+VF AEL+ L + + STK L ++ DS +++QA+ S A ++ W
Sbjct: 2 RTVFEAELVGASLAID---IIASTKRLTRAAVLLDSQAAIQALRG-SGTKAGQQLVHEFW 57
Query: 204 LD---LVACGKEISFM--WCPSHCGISGNEAVDVAAKNPSPS 240
+ L A + +S + W P H G+ GNE VD AK +
Sbjct: 58 VRVHRLRASRRTLSLIVAWVPGHVGVEGNERVDAEAKAAAEG 99
>gi|427792017|gb|JAA61460.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1103
Score = 43.5 bits (101), Expect = 0.092, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 17/132 (12%)
Query: 114 DRILCFTDGSKTENSTSCAYT--INKNVNSFRLNVVNSVF-SAELMAILLCLQNLKYLPS 170
DR+ +TD ++T N + ++ V++ + +SV S E++A+ L +Q+ LP+
Sbjct: 921 DRVF-YTDAARTANGHTAVVVSGTHEVVSAASICSPSSVSNSGEILAVTLAIQHTLSLPA 979
Query: 171 TKFLLVTDSMSSLQAITS-----KSCNNALL--SKIYSTWLDLVACGKEISFMWCPSHCG 223
+ ++TDS ++ +A + K+ ++ LL SK+ S + I +W P H
Sbjct: 980 DTYYILTDSQAACRAFLTGRGIPKTSHSILLRTSKVVSHNSHI------IHLLWTPGHAS 1033
Query: 224 ISGNEAVDVAAK 235
+SGNE AA+
Sbjct: 1034 LSGNERAHAAAR 1045
>gi|212532171|ref|XP_002146242.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
gi|210071606|gb|EEA25695.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
Length = 358
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 18/174 (10%)
Query: 119 FTDGSKTENSTSCAYTINKNVNS-------FRLNVVNSVFSAELMAILLCLQNL--KYLP 169
++DGS+ +N + A + V + VF AELM + L+ ++LP
Sbjct: 34 WSDGSRQDNGRTGAGVALQIVPEAPWEHLELPMGTGFEVFDAELMGVASALEWALERHLP 93
Query: 170 STKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGN 227
+L+ D+ ++++ + T +L + + L G+ ++ W P H G+ GN
Sbjct: 94 GPIHVLL-DAQNAIKRLQSTEPGAGQSLALRAHMAASRLRLSGRPVTIQWVPGHNGVEGN 152
Query: 228 EAVD-----VAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNK 276
E D A+K P F L L ++ NW N+V ++
Sbjct: 153 EQADQAAKPAASKPAGPGFEGLSLAYVRRACTEARRAAVENWARE-NAVQGAHR 205
>gi|37935951|gb|AAO47191.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 43.5 bits (101), Expect = 0.092, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+L+ LQ+ K K +VTDS L I+S+ + S I ++ + ++
Sbjct: 630 AELMAVLIALQDSK----EKVNIVTDSQYVLGIISSQPTQSD--SPIVQQIIEELTKKEQ 683
Query: 213 ISFMWCPSHCGISGNEAVD 231
W P+H GI GNE +D
Sbjct: 684 TYITWVPAHKGIGGNEKID 702
>gi|288187902|gb|ADC42438.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQD----SGAEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + SK+ S ++ + +++ W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQAQPDKSE--SKLVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQID 648
>gi|242826126|ref|XP_002488578.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712396|gb|EED11822.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 599
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 21/149 (14%)
Query: 117 LCFTDGSKTENSTSCAYTI---NKNVNSFRLNVVNS-----VFSAELM----AILLCL-- 162
+ ++D S +N A + N+N+ + R + S + AEL+ AI L L
Sbjct: 307 VVYSDASGHDNHLGAAAVVLDRNQNIVASRKTAIGSMAHWSIHIAELIGVYYAISLALKI 366
Query: 163 -----QNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISF 215
Q+ + ++++S S++QAI + + ++ I + +L + G +
Sbjct: 367 FHQNGQSTRPGAGEAITILSNSKSAIQAIKNPRNTSRQRVIEAINQSAYELDSRGIPLRL 426
Query: 216 MWCPSHCGISGNEAVDVAAKNPSPSFPPL 244
W P HC GN+A D AK P++ L
Sbjct: 427 QWIPGHCDDLGNDAADRLAKAAEPTYGEL 455
>gi|339507356|gb|AEJ81090.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I +K + S+I S ++ + +++
Sbjct: 574 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAKPDKSE--SEIVSQIIEQLIKKEKV 627
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 628 YLAWVPAHKGIGGNEXVD 645
>gi|289187374|gb|ADC92265.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + + Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAASRETKVGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQD----SGVEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQID 648
>gi|19335965|emb|CAC38421.2| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1445
Score = 43.5 bits (101), Expect = 0.096, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K + +VTDS L I+S+ + S + ++ + ++
Sbjct: 1064 AELMAVLLALQDSKETVN----IVTDSQYVLGIISSQPTQSE--SPLVQQIIEELTQKEQ 1117
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 1118 VFLTWVPAHKGIGGNEKID 1136
>gi|327458265|gb|AEA76572.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ ++ +V
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQXTELQAIHLALQD----SGSEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|327458371|gb|AEA76625.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AILL LQ+ + ++TDS +L I ++ + L+S+I ++ + +
Sbjct: 478 ELQAILLALQD----SGIEVNIITDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 529
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 530 KVYLAWVPAHKGIGGNEQVD 549
>gi|288187751|gb|ADC42366.1| pol protein [Human immunodeficiency virus 1]
Length = 570
Score = 43.5 bits (101), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + + Y +K + EL AI L LQ+ + +V
Sbjct: 441 YVDGAASRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIYLALQD----SGVEVNIV 496
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSESELVSQI----IEQLIQKEKVYLAWVPAHKGIGGNEQVD 549
>gi|344311707|gb|AEN04376.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 63/161 (39%), Gaps = 24/161 (14%)
Query: 73 IPPWSSV--VPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + K+ V F V N +TK G T+
Sbjct: 411 IPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRDTK------LGKAGYVTDKGRQ 464
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKS 190
+N+ N AEL AI L LQ+ + +VTDS +L I ++
Sbjct: 465 KIVALNETTNQ----------KAELQAIQLALQD----SGPEVNIVTDSQYALGIIQAQP 510
Query: 191 CNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ S+I + ++ + + + W P+H GI GNE VD
Sbjct: 511 DKSD--SEIVTQIIEQLITKERVYLSWVPAHKGIGGNEQVD 549
>gi|327458229|gb|AEA76554.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AILL LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 478 ELQAILLALQDA----GLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLINKE 529
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 530 KVYLSWVPAHKGIGGNEQVD 549
>gi|321456611|gb|EFX67714.1| hypothetical protein DAPPUDRAFT_330770 [Daphnia pulex]
Length = 316
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 116 ILCFTDGSKT--ENSTSCAYTI---NKNVNSFRLNVVNSVFSAELMAILLCLQ---NLKY 167
I +TDGSK+ + +T+CA I NK + + L +S+F+AE+ AI L+ ++
Sbjct: 23 IRAYTDGSKSSSQETTTCAIFIPALNKE-HVWTLTKGSSIFTAEVTAIYQALKLFYDMDD 81
Query: 168 LPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGN 227
P + S + ++ N ++ L + G W PSH GI GN
Sbjct: 82 CPPEAIIYSDSSSAITAISSNSLSENEAITATREIISSLKSSGTRTRLTWIPSHTGIEGN 141
Query: 228 EAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
E D A + ++ ++ K ++ I++ NW
Sbjct: 142 ERADRLAATECNTQDGEEVHNSLSPKEMV-SIIRANW 177
>gi|339507407|gb|AEJ81115.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.5 bits (101), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AILL LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 574 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 625
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 626 KVYLAWVPAHKGIGGNEQVD 645
>gi|170778879|gb|ACB36839.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.5 bits (101), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + EL AI L LQ+ ++ +V
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIHLALQD----SGSEVNIV 496
Query: 177 TDSMSSL---QAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L QA+ KS + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAVPDKS-ESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|327458373|gb|AEA76626.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AILL LQ+ + ++TDS +L I ++ + L+S+I ++ + +
Sbjct: 478 ELQAILLALQD----SGIEVNIITDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 529
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 530 KVYLAWVPAHKGIGGNEQVD 549
>gi|13095209|gb|AAK12183.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++L+ +
Sbjct: 480 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVSQI----IELLIKKE 531
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 532 KVYLAWVPAHKGIGGNEQVD 551
>gi|13095229|gb|AAK12192.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S++ S ++ + +E+
Sbjct: 478 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDQSG--SELVSQIIEQLIKKEEV 531
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 532 YLAWVPAHKGIGGNEQVD 549
>gi|156053530|ref|XP_001592691.1| hypothetical protein SS1G_05611 [Sclerotinia sclerotiorum 1980]
gi|154703393|gb|EDO03132.1| hypothetical protein SS1G_05611 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 694
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 74/181 (40%), Gaps = 28/181 (15%)
Query: 116 ILCFTDGSKTE---NSTSCAYTINK-----NVNSFRLNVVNSVFSAELMAILLCLQNLKY 167
I F+DGSK+E +T + I++ +SF L VF AE A +
Sbjct: 396 IQIFSDGSKSESKDGATGGGFVISQFDIQIAHHSFSLGTNAEVFDAEATAAVAGAAKALT 455
Query: 168 LPSTKFLLVTDSMSSLQ----AITSKSCNNALLSKIYSTWLDLVAC------------GK 211
L STK L TD L A+ S N +++ +L L GK
Sbjct: 456 LASTK--LATDLWIFLDNHEAALRLGSHFNGSSQRVFEDFLKLTQAWAVRPRLPHTSPGK 513
Query: 212 EISFMWCPSHCGISGNEAVDVAAKNPSP-SFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
I W P H I GNE D AAK + FP +C+ + K +I+ + + WN+
Sbjct: 514 -IRVRWVPGHLDIPGNEIADKAAKEGTKLPFPLNPICTLASLKRMIRTRANKADEQLWNT 572
Query: 271 V 271
V
Sbjct: 573 V 573
>gi|156057831|ref|XP_001594839.1| hypothetical protein SS1G_04647 [Sclerotinia sclerotiorum 1980]
gi|154702432|gb|EDO02171.1| hypothetical protein SS1G_04647 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 487
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 79/220 (35%), Gaps = 36/220 (16%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK++ + N+ KY + I +TD S T
Sbjct: 135 YFPPWKKEVPYRVNISKLGKEE--------AAMIHNLAFKYRCKNTITIYTDASSTLEGI 186
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
S TIN VN V++ EL+ + ++ N P K
Sbjct: 187 GVGIGIVVILPNGRNSYQETINIGVNQL-------VYNGELLGVTKAIEYANSIAQPGNK 239
Query: 173 FLLVTDSMSSLQAIT--SKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAV 230
F + +D+ + L + S S + K + G EIS W P H + GNE
Sbjct: 240 FKIYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNKGAEISLNWVPGHTSVQGNELA 299
Query: 231 DVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
D AK + S + IK++ NW + N+
Sbjct: 300 DSLAKEATKIPSSSHETSYASIGMDIKRMKSENWMAILNT 339
>gi|288187797|gb|ADC42387.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQD----SGVEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|344311858|gb|AEN04451.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 20/112 (17%)
Query: 122 GSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMS 181
G T+ T+N+ N AEL AI L LQ+ ++ +VTDS
Sbjct: 456 GYVTDKGRQKIITLNETTNQ----------KAELQAIQLALQD----SGSEVNIVTDSQY 501
Query: 182 SLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+L I ++ + L+++I ++ + + I W P+H GI GNE VD
Sbjct: 502 ALGIIQAQPDKSESELVNQI----IEQLIQKERIYLSWVPAHKGIGGNEQVD 549
>gi|289187366|gb|ADC92261.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ + +V
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGKQKVVALTDTTNQKTELQAIYLALQD----SGAEVNIV 496
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE +D
Sbjct: 497 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQID 549
>gi|288187868|gb|ADC42421.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DGS + Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGSANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQD----SGVEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|327458227|gb|AEA76553.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AILL LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 478 ELQAILLALQDA----GLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLINKE 529
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 530 KVYLSWVPAHKGIGGNEQVD 549
>gi|255984098|gb|ACU46121.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 577 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIXKEKV 630
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 631 YLAWVPAHKGIGGNEQVD 648
>gi|344311856|gb|AEN04450.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 20/112 (17%)
Query: 122 GSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMS 181
G T+ T+N+ N AEL AI L LQ+ ++ +VTDS
Sbjct: 456 GYVTDKGRQKIITLNETTNQ----------KAELQAIQLALQD----SGSEVNIVTDSQY 501
Query: 182 SLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+L I ++ + L+++I ++ + + I W P+H GI GNE VD
Sbjct: 502 ALGIIQAQPDKSESELVNQI----IEQLIQKERIYLSWVPAHKGIGGNEQVD 549
>gi|289187284|gb|ADC92221.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + AEL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKAELQAIHLALQD----SXVEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQID 648
>gi|9929869|dbj|BAB12110.1| pol polyprotein [Equine infectious anemia virus]
Length = 1148
Score = 43.5 bits (101), Expect = 0.11, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 116 ILCFTDGSKTENSTSCAY-TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
I +TDG K AY T N RL V AE MAI + L++++ +
Sbjct: 623 ITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALEDIR---DKQVN 678
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE---ISFMWCPSHCGISGNEAVD 231
+VTDS + IT L S W ++ +E + F W P H GI GN+ D
Sbjct: 679 IVTDSYYCWKNITE----GLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGIYGNQLAD 734
Query: 232 VAAK 235
AAK
Sbjct: 735 EAAK 738
>gi|288188478|gb|ADC42713.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DGS + Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGSANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQD----SGVEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|344311629|gb|AEN04337.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y +K + AEL AI L LQ+ ++ +V
Sbjct: 441 YVDGAANRETKMGKAGYVTDKGRQKIVTLTETTNQKAELQAIQLALQD----SGSEVNIV 496
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAA 234
TDS +L I ++ + L+++I ++ + + I W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSESELVNQI----IEQLINKERIYLSWVPAHKGIGGNEQVDKLV 552
Query: 235 KN 236
N
Sbjct: 553 SN 554
>gi|289187286|gb|ADC92222.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQD----SGAEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + ++I W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQID 648
>gi|339507539|gb|AEJ81181.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I S+ + L+++I ++ +
Sbjct: 573 AELQAIXLALQD----SGSEVNIVTDSQYALGIIQSQPDQSESELVNQI----IEQLIQK 624
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+ I W P+H GI GNE VD
Sbjct: 625 ERIYLSWVPAHKGIGGNEQVD 645
>gi|288187866|gb|ADC42420.1| pol protein [Human immunodeficiency virus 1]
Length = 671
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 16/110 (14%)
Query: 122 GSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMS 181
G T+ T+N N EL AI L LQ+ + +VTDS
Sbjct: 555 GYVTDKGRQKVVTLNDTTNQ----------KTELQAIYLALQD----SGVEVNIVTDSQY 600
Query: 182 SLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+L I ++ + S+I S ++ + +++ W P+H GI GNE VD
Sbjct: 601 ALGIIQAQPDKSE--SEIVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|344311742|gb|AEN04393.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGS--KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y ++ + AEL AI L LQ+ ++ +V
Sbjct: 441 YVDGAANRETKXGKAGYVTDRGRQKIVXLTETTNQKAELQAIQLALQD----SGSEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I + ++ + + I W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEIVNQIIEQLINKERIYLSWVPAHKGIGGNEQVD 549
>gi|339507537|gb|AEJ81180.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ ++L+ + I
Sbjct: 574 ELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVXXIIELLIXKERI 627
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 628 YLAWVPAHKGIGGNEQVD 645
>gi|170778863|gb|ACB36831.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + EL AI L LQ+ ++ +V
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGXQKVVSLTDTTNQKTELQAIXLALQD----SGSEVNIV 496
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|11385868|gb|AAG34998.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 514
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 432 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLINKEKV 485
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 486 YLAWVPAHKGIGGNEQVD 503
>gi|42592280|emb|CAF29001.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 557
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AILL LQ+ + +V
Sbjct: 425 YVDGAANRETKLGRAGYVTNKGKQKVVSITDTTNQKTELQAILLALQD----SGLEVNIV 480
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAA 234
TDS +L I ++ + L+++I ++ + +++ W P+H GI GNE VD
Sbjct: 481 TDSQYALGIIQAQPDKSESELVNQI----IEQLINKEKVYLAWVPAHKGIGGNEQVDKLV 536
Query: 235 KN 236
N
Sbjct: 537 SN 538
>gi|339507340|gb|AEJ81082.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 574 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 625
Query: 212 EISFMWCPSHCGISGNEAVD 231
+I W P+H GI GNE VD
Sbjct: 626 KIYLAWVPAHKGIGGNEQVD 645
>gi|327458183|gb|AEA76531.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I ++ + L+++I G
Sbjct: 477 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQ-----LIG 527
Query: 211 KEISFM-WCPSHCGISGNEAVDVAAKN 236
KE ++ W P+H GI GNE VD N
Sbjct: 528 KERVYLSWVPAHKGIGGNEQVDKLVSN 554
>gi|306416286|gb|ADM86990.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + + Y N+ + EL AI L LQ+ ++ +V
Sbjct: 441 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD----SGSEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDRSE--SEIVSQIIEELIKKEKVYLSWVPAHKGIGGNEQVD 549
>gi|327458185|gb|AEA76532.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I ++ + L+++I G
Sbjct: 477 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQ-----LIG 527
Query: 211 KEISFM-WCPSHCGISGNEAVDVAAKN 236
KE ++ W P+H GI GNE VD N
Sbjct: 528 KERVYLSWVPAHKGIGGNEQVDKLVSN 554
>gi|327458205|gb|AEA76542.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ ++ +V
Sbjct: 441 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIHLALQD----SGSEVNIV 496
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDRSESELVSQI----IEQLIXKEKVYLAWVPAHKGIGGNEQVD 549
>gi|242825388|ref|XP_002488430.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712248|gb|EED11674.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1977
Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P ++ D+ +++ + T AL+ + +
Sbjct: 1686 HEVFDAELVGVATALEWALERQPLGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHKAAE 1745
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAA-----KNPSPSFPPLKL 246
L G+ ++ W P H GI GNE D AA K +P F L L
Sbjct: 1746 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEDLSL 1792
>gi|393225485|gb|EJD33472.1| hypothetical protein AURDEDRAFT_39389, partial [Auricularia
delicata TFB-10046 SS5]
Length = 126
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 148 NSVFSAELMAILLCLQNLKYLPST--KFLLVTDSMSSLQAITSKSC--NNALLSKIYSTW 203
++V+ EL +LL L + LP + + ++ D+ +++AI + C L+ +
Sbjct: 2 HTVYEGELTGLLLALDIARTLPLSIRRATILLDNQPAIRAIRVRRCRPGQQLVDAFHREV 61
Query: 204 LDL--VACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
L V G ++ W P H I+GNE D AK +
Sbjct: 62 ASLLRVRHGFKLHIAWVPGHFDIAGNELADTHAKRAA 98
>gi|343414705|emb|CCD20916.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 295
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 17/141 (12%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAI------LLCLQNLK 166
+TDGS + +S A + R VV + AE +A+ L+ + L
Sbjct: 66 WTDGSVVLDVSSGAGALVYTKEGRREKVVLGAGSLACSYRAECVAMEAGLKRLVDVMELS 125
Query: 167 YLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGI 224
T+ + DS+S L A+ + + +A+L +I+ L +V ++F + SHCG+
Sbjct: 126 KTRRTRVVAFADSLSLLMALNTGPAAVKDAILRRIWDLILHIVRLRVSVNFQFVFSHCGV 185
Query: 225 SGNEAVDVAAK--NPSP-SFP 242
N+A D AA+ N P S+P
Sbjct: 186 PRNDAADKAAEQGNAKPQSYP 206
>gi|289187339|gb|ADC92248.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAAXRETKLGKAGYVTNKGRQKVVTLTDTTNQXTELQAIYLALQD----SGVEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIXKEKVYLAWVPAHKGIGGNEQID 648
>gi|469241|gb|AAA44860.1| pol polyprotein, partial [Human immunodeficiency virus 1]
Length = 1033
Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+L+ LQ+ K + +VTDS L I+S+ + S I ++ + +
Sbjct: 652 AELMAVLIALQDSK----EQVNIVTDSQYVLGIISSQPTQSD--SPIVQQIIEELTKKER 705
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 706 VYLTWVPAHKGIGGNEKID 724
>gi|343420798|emb|CCD19000.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 320
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 90/214 (42%), Gaps = 19/214 (8%)
Query: 46 PLLMRAREITDFIANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFL 105
P+ +R ++ + I S E P+D + W V + + +G K + +V +
Sbjct: 87 PIHVRLAKVQHLYSTIGSPE-KPHDAKVLQWVRRV-HFNITTPAGLKADAPEKDKKVHTM 144
Query: 106 VNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAIL 159
+ +TDGS + +S A + R VV + AE +A+
Sbjct: 145 RRVQRFRDFGHQVWTDGSVVLDVSSGAGALVHPKVGRREKVVLGAGSLACSYRAECVAME 204
Query: 160 LCLQ------NLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGK 211
L+ L T+ + TDS+S L A+++ +A+L I+ L +V
Sbjct: 205 AGLKRLTDTIELSKTHRTRVVAFTDSLSLLMALSTGPAGVEDAMLRPIWDLILRIVRLRV 264
Query: 212 EISFMWCPSHCGISGNEAVDVAAK--NPSP-SFP 242
++F + SHCG+ NEA D A+ N P S+P
Sbjct: 265 SVNFQFVFSHCGVPRNEAADKEAEQGNAKPQSYP 298
>gi|344311824|gb|AEN04434.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 28/163 (17%)
Query: 73 IPPWSSV-VPSIDTSLHSGKKDNVSPS-VFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + + +KD ++ + F V N TK G T+
Sbjct: 411 IPEWEFVNTPPLVKLWYQLEKDPIAEAETFYVDGAANRETK------LGKAGYVTDRGRQ 464
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK- 189
++N+ N AEL AI L LQ+ ++ +VTDS +L I ++
Sbjct: 465 KIVSLNETTNQ----------KAELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQP 510
Query: 190 -SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ L+++I ++ + + + W P+H GI GNE VD
Sbjct: 511 DKSESELVNQI----IEQLINKERVYLTWVPAHKGIGGNEQVD 549
>gi|339507523|gb|AEJ81173.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ ++ +V
Sbjct: 537 YVDGAANRETKLGKAGYVTNKGRQKTVSITDTTNQKTELQAIYLALQD----SGSEVNIV 592
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I S ++ + +++ W P+H GI GNE VD
Sbjct: 593 TDSQYALGIIQAQPDKSE--SEIVSLIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 645
>gi|167832827|gb|ACA01989.1| pol protein [Human immunodeficiency virus 1]
Length = 711
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ ++ + +++
Sbjct: 633 ELQAILLALQDA----GLEVNIVTDSQYALGIIQAQPDKSE--SELVGQIIEQLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 687 XLAWVPAHKGIGGNEQVDKLVSN 709
>gi|49574437|gb|AAT66884.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + AEL AI L LQ+ + +V
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTGTTNQKAELQAIHLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEVVSQIIEELIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|156065811|ref|XP_001598827.1| hypothetical protein SS1G_00916 [Sclerotinia sclerotiorum 1980]
gi|154691775|gb|EDN91513.1| hypothetical protein SS1G_00916 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1179
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 74/181 (40%), Gaps = 28/181 (15%)
Query: 116 ILCFTDGSKTE---NSTSCAYTINK-----NVNSFRLNVVNSVFSAELMAILLCLQNLKY 167
I F+DGSK+E +T + I++ +SF L VF AE A +
Sbjct: 881 IQIFSDGSKSESKDGATGGGFVISQFDIQIAHHSFSLGTNAEVFDAEATAAVAGAAKALT 940
Query: 168 LPSTKFLLVTDSMSSLQ----AITSKSCNNALLSKIYSTWLDLVAC------------GK 211
L STK L TD L A+ S N +++ +L L GK
Sbjct: 941 LASTK--LATDLWIFLDNHEAALRLGSHFNGSSQRVFEDFLKLTQAWAVRPRLPHTSPGK 998
Query: 212 EISFMWCPSHCGISGNEAVDVAAKNPSP-SFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
I W P H I GNE D AAK + FP +C+ + K +I+ + + WN+
Sbjct: 999 -IRVRWVPGHLDIPGNEIADKAAKEGTKLPFPLNPICTLASLKRMIRTRANKADEQLWNT 1057
Query: 271 V 271
V
Sbjct: 1058 V 1058
>gi|114050737|ref|NP_001039970.1| ribonuclease H1 [Bos taurus]
gi|86438465|gb|AAI12855.1| Ribonuclease H1 pseudogene 1 [Bos taurus]
gi|296484317|tpg|DAA26432.1| TPA: ribonuclease H1 [Bos taurus]
Length = 280
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 19/144 (13%)
Query: 114 DRILCFTDGSKTENSTSCA-------YTINKNVN-SFRLNVVNSVFSAELMAILLCLQNL 165
D ++ +TDG + N A + +N RL + AE+ A ++
Sbjct: 132 DSVVVYTDGCCSSNGRKRARAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 191
Query: 166 KYLPSTKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYSTWLDLVACGKEIS 214
K TK +L TDSM ++ IT+ S + +K L+ +A G +I
Sbjct: 192 KAQDITKLVLYTDSMFTINGITTWVKGWKQNGWRTSTGKEVTNKEDFAELERLARGMDIQ 251
Query: 215 FMWCPSHCGISGNEAVDVAAKNPS 238
+M P H G GNE D A+ +
Sbjct: 252 WMHVPGHSGFRGNEEADRLAREGA 275
>gi|242794486|ref|XP_002482384.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218718972|gb|EED18392.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1025
Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P ++ D+ +++ + T AL+ + +
Sbjct: 103 HEVFDAELVGVATALEWALERQPLDPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHRAAK 162
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAA-----KNPSPSFPPLKL 246
L G+ ++ W P H GI GNE D AA K +P F L L
Sbjct: 163 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSL 209
>gi|242811714|ref|XP_002485806.1| hypothetical protein TSTA_098250 [Talaromyces stipitatus ATCC
10500]
gi|218714145|gb|EED13568.1| hypothetical protein TSTA_098250 [Talaromyces stipitatus ATCC
10500]
Length = 275
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 148 NSVFSAELMAILLCLQ---NLKYL-PSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTW 203
+ VF A+L+ + L+ + L P FL +++ L++ T AL+ + +
Sbjct: 5 HEVFDAKLVGVATALEWALERQLLGPIWVFLDAQNAIDRLKS-TRPGPGQALVLRAHRAA 63
Query: 204 LDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
L + G+ ++ W P H G+ GNE D AAK +
Sbjct: 64 EKLASRGQPVTIQWVPGHSGVEGNEQADQAAKRAA 98
>gi|339507280|gb|AEJ81052.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y +K + EL AI L LQ+ + +V
Sbjct: 537 YVDGAANRETKLGKAGYVTDKGRQKIXSLTDTTNQKTELQAIYLALQD----SGLEVNIV 592
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I S ++ + +++ W P+H GI GNE VD
Sbjct: 593 TDSQYALGIIQAQPDKSE--SEIVSQIIEQLIXKEKVYLAWVPAHKGIGGNEQVD 645
>gi|49574445|gb|AAT66888.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + AEL AI L LQ+ + +V
Sbjct: 441 YVDGAANREAKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEVVSQIMEELIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|110815944|sp|Q79666.3|POL_HV1MV RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1446
Score = 43.1 bits (100), Expect = 0.13, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+L+ LQ+ K + +VTDS L I+S+ + S I ++ + +
Sbjct: 1065 AELMAVLIALQDSK----EQVNIVTDSQYVLGIISSQPTQSD--SPIVQQIIEELTKKER 1118
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 1119 VYLTWVPAHKGIGGNEKID 1137
>gi|339507437|gb|AEJ81130.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ ++ +V
Sbjct: 537 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQD----SGSEVNIV 592
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L + ++ + S+I S ++ + +++ W P+H GI GNE VD
Sbjct: 593 TDSQYALGILQAQPDKSE--SEIVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 645
>gi|255984290|gb|ACU46217.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S+I S ++L+ +++
Sbjct: 78 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIELLIKKEKV 131
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 132 YLAWVPAHKGIGGNEQVD 149
>gi|344311822|gb|AEN04433.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 28/163 (17%)
Query: 73 IPPWSSV-VPSIDTSLHSGKKDNVSPS-VFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + + +KD ++ + F V N TK G T+
Sbjct: 411 IPEWEFVNTPPLVKLWYQLEKDPIAEAETFYVDGAANRETK------LGKAGYVTDRGRQ 464
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK- 189
++N+ N AEL AI L LQ+ ++ +VTDS +L I ++
Sbjct: 465 KIVSLNETTNQ----------KAELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQP 510
Query: 190 -SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ L+++I ++ + + + W P+H GI GNE VD
Sbjct: 511 DKSESELVNQI----IEQLINKERVYLTWVPAHKGIGGNEQVD 549
>gi|344311740|gb|AEN04392.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + +
Sbjct: 477 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLINKER 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 531 IYLSWVPAHKGIGGNEQVD 549
>gi|427791855|gb|JAA61379.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 891
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 73/160 (45%), Gaps = 23/160 (14%)
Query: 87 LHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTI--------NKN 138
LH+G++ + + + + + + +TD S SC Y I +
Sbjct: 640 LHAGRRHAAA---------QHHSPSFSTQAVAYTDASFVAPRGSCGYAIYHPQLSAPETH 690
Query: 139 VNSFRLNVVNSVFSAELMAILLCLQNLKYLPST-KFLLVTDSMSSLQAITSKSCNNALLS 197
+ L+ N V S E+++I+ L++ LPS ++ L +DS ++++ I +++ ++L
Sbjct: 691 TSGPYLHPPN-VLSLEVLSIVHALESFSSLPSVPEYTLFSDSYAAIRHIQNRTLPHSLEQ 749
Query: 198 KIYSTWLDLVACGKEISFM-WCPSHCGISGNEAVDVAAKN 236
++ + A F+ W P H GI GNE A++
Sbjct: 750 EVERA---VSALQPSTVFLRWVPGHSGIDGNELAHRLARD 786
>gi|49574424|gb|AAT66878.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|49574439|gb|AAT66885.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + AEL AI L LQ+ + +V
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEVVSQIIEELIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|255984104|gb|ACU46124.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + EL AI L LQ+ +K +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQD----SGSKVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDQSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|255984100|gb|ACU46122.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + EL AI L LQ+ +K +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQD----SGSKVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDQSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|226348540|gb|ACO50589.1| pol protein [Human immunodeficiency virus 1]
Length = 757
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 12/117 (10%)
Query: 119 FTDGS--KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + S Y NK + EL AI L LQ+ ++ +V
Sbjct: 374 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQD----SGSEVNIV 429
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+++I ++ + +++ W P+H GI GNE VD
Sbjct: 430 TDSQYALGIIQAQPDKSESELVNQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 482
>gi|242798560|ref|XP_002483195.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218716540|gb|EED15961.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 574
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 149 SVFSAELMAILLCLQ---NLKYL-PSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWL 204
VF AEL+ + + L+ + L P FL ++++ L++ T L+ + +
Sbjct: 405 EVFDAELVGVAIALEWALGRQLLGPIWVFLDAQNAINRLKS-TRPGPGKGLVLRAHRAAK 463
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAAKNP-----SPSFPPLKLC 247
L G+ ++ W P H GI GNE D AAK +P F L L
Sbjct: 464 KLAMRGQLVTIQWVPGHSGIEGNERADQAAKRAASKQTAPGFEHLSLA 511
>gi|88809994|gb|ABD52331.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 559
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I SK + L+++I ++ + +
Sbjct: 477 ELQAIQLALQD----SGSEVNIVTDSQYALGIIQSKPDKSESELVNQI----IEQLINKE 528
Query: 212 EISFMWCPSHCGISGNEAVD 231
+I W P+H GI GNE VD
Sbjct: 529 KIYLAWVPAHKGIGGNEQVD 548
>gi|343473895|emb|CCD14334.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 863
Score = 43.1 bits (100), Expect = 0.14, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 171 TKFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
T+ + TDS+ L A+++ +A+L +I+ L LV ++F + SHCG+ NE
Sbjct: 273 TRVVAFTDSLPLLMALSTGPAVVEDAILRRIWDLILRLVRLRVSVNFQFVFSHCGMPRNE 332
Query: 229 AVDVAAK--NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTYR 281
A D AA+ N P P + ++ + ++ + S G L+T+R
Sbjct: 333 AADKAAEQGNAKPQMYPAWITD------IVMGVERQVRNEMYRSFEEGRMLRTHR 381
>gi|339507413|gb|AEJ81118.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGS--KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + S Y BK + EL AI L LQ+ + +V
Sbjct: 537 YVDGAANRETKSGKAGYVTBKGRQKVVSLTDTTNQQTELQAIXLALQD----SGLEVNIV 592
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L + ++ + SK+ S ++ + + + W P+H GI GNE +D
Sbjct: 593 TDSQYALGILQAQPDKSE--SKLVSQIIEQLIKKERVYLAWVPAHKGIGGNEQID 645
>gi|49574461|gb|AAT66896.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + AEL AI L LQ+ + +V
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEVVSQIIEELIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|49574420|gb|AAT66876.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|49574422|gb|AAT66877.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + AEL AI L LQ+ + +V
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEVVSQIIEELIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|339507527|gb|AEJ81175.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ + ++ + ++I
Sbjct: 574 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEVVNQIIEQLIKKEKI 627
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 628 YLAWVPAHKGIGGNEQVD 645
>gi|321472863|gb|EFX83832.1| hypothetical protein DAPPUDRAFT_100218 [Daphnia pulex]
Length = 554
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 78/184 (42%), Gaps = 34/184 (18%)
Query: 64 SEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFL----VNINTKYHDRILCF 119
S P K +PPW SI T+ K + S Q N NT + + +
Sbjct: 224 SSQTPEVKPLPPWKHF--SIPTNYFPLTKKQATESNQTNQLFNSLTRNPNTNH---LEVY 278
Query: 120 TDGS--KTENSTSCAYTINKNVNS---FRLNVVNSVFSAELMAILLCLQNL-KYLPSTKF 173
TDGS +T + SCA+ I K N NS F+AEL AI L +L KY
Sbjct: 279 TDGSVCETTKTASCAFHIPKKKEDEVWLLKNFTNS-FNAELYAIRQALYHLNKY------ 331
Query: 174 LLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGK-EISFMWCPSHCGISGNEAVDV 232
+ S++Q +S N L K Y T + G+ I+ W PSH GI GNE D
Sbjct: 332 ----EMDSTIQPPSSLIQN--LPFKQYPT-----SNGRTRITLTWIPSHAGIVGNEIADQ 380
Query: 233 AAKN 236
A N
Sbjct: 381 LATN 384
>gi|288187840|gb|ADC42407.1| pol protein [Human immunodeficiency virus 1]
Length = 672
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAINLALQD----SGAEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|159031797|dbj|BAF91870.1| polyprotein [Human immunodeficiency virus 1]
Length = 515
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 441 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEVVSQIIEQLIKKEKV 494
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 495 YLAWVPAHKGIGGNEQVD 512
>gi|37221404|gb|AAQ89831.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ ++ +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQD----SGSEVNIV 595
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|16306477|gb|AAG22546.2| type 1 reverse transcriptase [Human immunodeficiency virus 1]
Length = 562
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Query: 73 IPPWSSV--VPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + K+ V F V N TK G T+
Sbjct: 413 IPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETK------LGKAGYVTDRGRQ 466
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK- 189
A +I N EL AI L LQ+ ++ +VTDS +L I ++
Sbjct: 467 KAVSITDTTNQ----------KTELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQP 512
Query: 190 -SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 513 DKSESELVSQI----IEELIKKEKVYLAWVPAHKGIGGNEQVD 551
>gi|49574441|gb|AAT66886.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + AEL AI L LQ+ + +V
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEVVSQIIEELIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|49574459|gb|AAT66895.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + AEL AI L LQ+ + +V
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEVVSQIIEELIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|344311854|gb|AEN04449.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 28/163 (17%)
Query: 73 IPPWSSV-VPSIDTSLHSGKKDNVSPS-VFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + + +KD ++ + F V N TK G T+
Sbjct: 411 IPEWEFVNTPPLVKLWYQLEKDPIAGAETFYVDGAANRETK------IGKAGYVTDQGRQ 464
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK- 189
T+N+ N AEL AI L LQ+ + +VTDS +L I ++
Sbjct: 465 KIXTLNETTNQ----------KAELQAIQLALQD----SGLEVNIVTDSQYALGIIQAQP 510
Query: 190 -SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ L+++I ++ + + + W P+H GI GNE VD
Sbjct: 511 DKSESELVNQI----IEQLINKERVYLSWVPAHKGIGGNEQVD 549
>gi|296224561|ref|XP_002758102.1| PREDICTED: ribonuclease H1 [Callithrix jacchus]
Length = 287
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 32/193 (16%)
Query: 62 DSSEFA-PYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFT 120
D E A PY KH+ P P + L S D+V Y D C +
Sbjct: 106 DGDEGAEPYAKHLKPSVEPAPPVSRDLFSYMGDSV--------------VVYTDGCCC-S 150
Query: 121 DGSKTENSTSCAY----TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+G + + Y + KNV RL + AE+ A ++ K +K ++
Sbjct: 151 NGRRRPRAGIGVYWGPGHLCKNVG-IRLPGRQTNQRAEIHAACKAIEQAKAQNISKLVVY 209
Query: 177 TDSMSSLQAITS-----------KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGIS 225
TDSM ++ IT+ S +++K L+ + G +I +M P H G
Sbjct: 210 TDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFM 269
Query: 226 GNEAVDVAAKNPS 238
GNE D A+ +
Sbjct: 270 GNEEADRLAREGA 282
>gi|327458351|gb|AEA76615.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + ++
Sbjct: 477 AELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLIKKEK 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 531 VYLAWVPAHKGIGGNEQVD 549
>gi|37221532|gb|AAQ89894.1| pol protein [Human immunodeficiency virus 1]
Length = 651
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + AEL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYITNKGRQKVVSLTDTTNQKAELQAIHLALQD----SGLEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|344311852|gb|AEN04448.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 28/163 (17%)
Query: 73 IPPWSSV-VPSIDTSLHSGKKDNVSPS-VFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + + +KD ++ + F V N TK G T+
Sbjct: 411 IPEWEFVNTPPLVKLWYQLEKDPIAGAETFYVDGAANRETK------IGKAGYVTDQGRQ 464
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK- 189
T+N+ N AEL AI L LQ+ + +VTDS +L I ++
Sbjct: 465 KIVTLNETTNQ----------KAELQAIQLALQD----SGLEVNIVTDSQYALGIIQAQP 510
Query: 190 -SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ L+++I ++ + + + W P+H GI GNE VD
Sbjct: 511 DKSESELVNQI----IEQLINKERVYLSWVPAHKGIGGNEQVD 549
>gi|344311631|gb|AEN04338.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+J + ++ + +
Sbjct: 477 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEJVNQIIEQLINKER 530
Query: 213 ISFMWCPSHCGISGNEAVDVAAKN 236
I W P+H GI GNE VD N
Sbjct: 531 IYLSWVPAHKGIGGNEQVDKLVSN 554
>gi|37221490|gb|AAQ89873.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 577 ELQAIYLALQD----SGVEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIQKEKV 630
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 631 YLAWVPAHKGIGGNEQVD 648
>gi|344311705|gb|AEN04375.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ + +VTDS +L I ++ + S+I + ++ + +
Sbjct: 477 AELQAIQLALQD----SGPEVNIVTDSQYALGIIQAQPDKSD--SEIVTQIIEQLITKER 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 531 VYLSWVPAHKGIGGNEQVD 549
>gi|339507248|gb|AEJ81036.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 62/163 (38%), Gaps = 28/163 (17%)
Query: 73 IPPWSSV--VPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + H K V F V N TK G T+
Sbjct: 507 IPEWEFVNTPPLVKLWYHLEKDPIVGAETFYVDGAANRETK------JGKAGYVTDKGRQ 560
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK- 189
TJN N EL AI L LQ+ + +VTDS +L I ++
Sbjct: 561 KVVTJNDTTNQ----------KTELEAINLALQD----SGLEVNIVTDSQYALGIIQAQP 606
Query: 190 -SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ L+S+I ++ + ++ W P+H GI GNE VD
Sbjct: 607 DKSESELVSQI----IEQLIKKXKVYLAWVPAHKGIGGNEQVD 645
>gi|225710246|gb|ACO10969.1| Ribonuclease H1 [Caligus rogercresseyi]
Length = 257
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 152 SAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAIT-----------SKSCNNALLSKIY 200
SAE+ AI +Q++K TK ++ TDS ++ ++ KS +++K
Sbjct: 159 SAEIQAISQAIQSVKNEGRTKVVIYTDSKFAINSVELWLEGWKQNGWKKSSGGDVINKAD 218
Query: 201 STWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSP 239
LD + G + F+ H GI GNE D A+ +
Sbjct: 219 FIQLDDIRKGMSVKFIHVRGHQGIHGNEMADQLAREGAQ 257
>gi|49574435|gb|AAT66883.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + AEL AI L LQ+ + +V
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEVVSQIIEELIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|587131|emb|CAA85506.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 573
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 478 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 531
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 532 YLAWVPAHKGIGGNEQVD 549
>gi|343421924|emb|CCD18644.1| hypothetical protein, conserved in T. vivax, (fragment)
[Trypanosoma vivax Y486]
Length = 250
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 155 LMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKE 212
L+ L + L T+ + TDS+S L A+ + + +A+L +I+ L +V
Sbjct: 109 LLKRLAGVIGLGETHRTRVVAFTDSLSLLMALNAGPAAVEDAILRRIWDLILRVVRLRVS 168
Query: 213 ISFMWCPSHCGISGNEAVDVAAKN 236
++F + SHCG+ NEA D AA+
Sbjct: 169 VNFQFVFSHCGVPRNEAADKAAEQ 192
>gi|342320199|gb|EGU12141.1| hypothetical protein RTG_01755 [Rhodotorula glutinis ATCC 204091]
Length = 539
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 143 RLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVT----DSMSSLQAIT--SKSCNNALL 196
R+ +V++ EL + L L +L S LL D+ S+L T + S L
Sbjct: 212 RMGQRQTVYTGELDGLRLALASLLVTQSADTLLAVLISLDNTSALTHSTDLTPSSGQHLR 271
Query: 197 SKIYSTWLDLVACGKEI--SFMWCPSHCGISGNEAVDVAAKN 236
I +L K+I W P H GI GNEA D AK
Sbjct: 272 LAIRQALEELARTRKDILVRLSWSPGHVGIEGNEAADFEAKG 313
>gi|37221400|gb|AAQ89829.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ ++ +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQD----SGSEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|49574451|gb|AAT66891.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ + +VTDS +L I ++ + S++ S ++ + ++
Sbjct: 477 AELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEVVSQIIEELIKKEK 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 531 VYLAWVPAHKGIGGNEQVD 549
>gi|344311800|gb|AEN04422.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + ++
Sbjct: 477 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSD--SEIVNQIIEQLIXKEK 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 531 VYLSWVPAHKGIGGNEQVD 549
>gi|288187649|gb|ADC42316.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIQLALQD----SGAEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE +D N
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQIDKLVSN 653
>gi|343422101|emb|CCD18584.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 1019
Score = 42.7 bits (99), Expect = 0.16, Method: Composition-based stats.
Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 16/205 (7%)
Query: 45 KPLLMRAREITDFIANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQF 104
+P+ +R ++ + + ID+ E +D + W+ V + + +G K + +V
Sbjct: 477 QPIHVRLEKVQNLCSTIDNPE-KTHDAKVLQWARRV-HFNITTPAGLKADAPEKDKKVHT 534
Query: 105 LVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAI 158
++ + +TDGS + +S A + + R VV + AE +A+
Sbjct: 535 MLRVQGFRGFDYQVWTDGSVVADVSSGAGALVCPKDGRREKVVLGAGSLACSYRAECVAM 594
Query: 159 LLCLQNL------KYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACG 210
L+ L T+ + TDS+S L A+ + + +A+L +I+ L +V
Sbjct: 595 EAGLKRLVNAIALSKTHRTRVVAFTDSLSLLMALNTGPAAVEDAILRRIWDLILHIVRLR 654
Query: 211 KEISFMWCPSHCGISGNEAVDVAAK 235
+F + SHCG+ NEA D A+
Sbjct: 655 VSFNFQFVFSHCGVPRNEAADEGAE 679
>gi|288187739|gb|ADC42360.1| pol protein [Human immunodeficiency virus 1]
Length = 668
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ ++ Y +K + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRDTKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIYLALQD----SGVEANIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|327458263|gb|AEA76571.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 478 ELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDQSE--SEIVSQIIEQLIKKEKV 531
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 532 YLAWVPAHKGIGGNEQVD 549
>gi|407739729|gb|AFU32459.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 721
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + + Y N+ + EL AI L LQ+ ++ +V
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD----SGSEVNIV 651
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK 235
TDS +L I ++ + S+I + ++ + +++ W P+H GI GNE VD+ ++
Sbjct: 652 TDSQYALGIIQAQPDRSE--SEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQVDIISQ 708
>gi|226348720|gb|ACO50679.1| pol protein [Human immunodeficiency virus 1]
Length = 750
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ T+ +VTDS +L I ++ + S+I + ++ + ++I
Sbjct: 408 ELQAIHLALQD----SGTEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLIKKEKI 461
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 462 YLAWVPAHKGIGGNEQVD 479
>gi|344311762|gb|AEN04403.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++L+ +
Sbjct: 478 ELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQI----IELLIKKE 529
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 530 KVYLSWVPAHKGIGGNEQVD 549
>gi|344311730|gb|AEN04387.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AILL LQ+ +VTDS +L I ++ + L+++I ++ +
Sbjct: 477 AELQAILLALQD----SXXXVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLINK 528
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
+ I W P+H GI GNE VD N
Sbjct: 529 ERIYLSWVPAHKGIGGNEQVDKLVSN 554
>gi|226348666|gb|ACO50652.1| pol protein [Human immunodeficiency virus 1]
Length = 754
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++L+ +
Sbjct: 411 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IELLIKKE 462
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 463 KVYLAWVPAHKGIGGNEQVD 482
>gi|49574429|gb|AAT66880.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + AEL AI L LQ+ + +V
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEVVSQIIEELIKKEKVYLAWVPAHKGIGGNERVD 549
>gi|242775784|ref|XP_002478709.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218722328|gb|EED21746.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 991
Score = 42.7 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P ++ D+ +++ + T AL+ + +
Sbjct: 700 HEVFDAELVGVATALEWALERQPLGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHRAAE 759
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAA-----KNPSPSFPPLKL 246
L G+ ++ W P H GI GNE D AA K +P F L L
Sbjct: 760 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSL 806
>gi|242794549|ref|XP_002482398.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218718986|gb|EED18406.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 2069
Score = 42.7 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P ++ D+ +++ + T AL+ + +
Sbjct: 1778 HEVFDAELVGVATALEWALERQPLGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHRAAE 1837
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAA-----KNPSPSFPPLKL 246
L G+ ++ W P H GI GNE D AA K +P F L L
Sbjct: 1838 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSL 1884
>gi|242814698|ref|XP_002486420.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218714759|gb|EED14182.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 874
Score = 42.7 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P ++ D+ +++ + T AL+ + +
Sbjct: 583 HEVFDAELVGVATALKWALERQPLGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHKAAE 642
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAA-----KNPSPSFPPLKL 246
L G+ ++ W P H GI GNE D AA K +P F L L
Sbjct: 643 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSL 689
>gi|156254387|gb|ABU62683.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 38 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKV 91
Query: 214 SFMWCPSHCGISGNEAVD 231
W PSH GI GNE VD
Sbjct: 92 YLAWVPSHKGIGGNEKVD 109
>gi|327458235|gb|AEA76557.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ ++ +VTDS +L I S+ + L+++I ++ +
Sbjct: 477 TELQAIXLALQD----SGSEVNIVTDSQYALGIIQSQPDKSESELVNQI----IEQLINK 528
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
++I W P+H GI GNE VD N
Sbjct: 529 EKIYLAWVPAHKGIGGNEQVDKLVSN 554
>gi|126360752|gb|ABO09897.1| pol protein [Simian immunodeficiency virus]
Length = 655
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSV-FSAELMAILLCLQNLKYLPSTKFLL 175
+ DG+ NS Y ++ +++ N+ AEL AIL+ L + K +
Sbjct: 356 YVDGAANRNSKLGRAGYVTDRG-QEKAIDLENTTNQKAELQAILMALTD----GPPKMNI 410
Query: 176 VTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
VTDS +L IT+ ++ + L+ KI L A I W P+H GI GN+ VD
Sbjct: 411 VTDSQYALGIITAAPETSESPLVEKIIQQLLTKEA----IYLSWVPAHKGIGGNQEVD 464
>gi|343476791|emb|CCD12211.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1120
Score = 42.7 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 171 TKFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
T+ + TDS+S L A+++ +A+L +I+ L LV ++F + SHCG+ NE
Sbjct: 833 TRVVAFTDSLSLLMALSTGPAVAEDAILRRIWDLILRLVRLRVSVNFQFVFSHCGVPRNE 892
Query: 229 AVDVAAK--NPSPSFPP 243
A D A+ N P P
Sbjct: 893 AADKEAEQGNAKPQMYP 909
>gi|156033247|ref|XP_001585460.1| predicted protein [Sclerotinia sclerotiorum 1980]
gi|154699102|gb|EDN98840.1| predicted protein [Sclerotinia sclerotiorum 1980 UF-70]
Length = 358
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 12/163 (7%)
Query: 114 DRILCFTDGSKTENSTSCAYTI------NKNVNSFRLNVVNS--VFSAELMAILLCLQNL 165
D +TD S TE I N+ + R N+ + V++ EL + ++
Sbjct: 22 DTTYIYTDASSTEKGIGIGVGIVAIQSNNRILYQERSNIGTNQLVYNGELFGVTRAIEYA 81
Query: 166 KYLPST--KFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLV--ACGKEISFMWCPSH 221
+ T KF + +D+ + L + + S + ++I + V A G EIS W P H
Sbjct: 82 SSIAYTGQKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEISLNWVPGH 141
Query: 222 CGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
+ GNE D AK + P S +K+ W
Sbjct: 142 TSVEGNELADKLAKEATTIQPTSNETSFGLLGMTVKEYASDQW 184
>gi|156254421|gb|ABU62700.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 38 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKV 91
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 92 YLAWVPAHKGIGGNEQVD 109
>gi|343416424|emb|CCD20374.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 328
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAILLCLQNLKYLPS-- 170
+TDGS + +S A + + R VV +SAE +A+ L+ L +
Sbjct: 15 WTDGSVVLDVSSGAGAVVYLKDGRRGKVVLGAGSLACSYSAECVAMEAGLKRLVEVIELS 74
Query: 171 ----TKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGI 224
T+ + TDS+S L A+ + + +A+L +I+ L +V ++F + SHCG+
Sbjct: 75 KTHRTRVVAFTDSLSLLMALNTGPAAVEDAILRRIWDLILRIVRLCVSVNFQFVFSHCGV 134
Query: 225 SGNEAVDVAAKN 236
NEA D A +
Sbjct: 135 PLNEAADKAVEQ 146
>gi|327458297|gb|AEA76588.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 12/81 (14%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSL---QAITSKSCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ + +VTDS +L QAI KS + L+S+I ++ +
Sbjct: 478 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAIPDKS-ESELVSQI----IEQLIKK 528
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+++ W P+H GI GNE VD
Sbjct: 529 EKVYLAWVPAHKGIGGNEQVD 549
>gi|327458295|gb|AEA76587.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 12/81 (14%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSL---QAITSKSCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ + +VTDS +L QAI KS + L+S+I ++ +
Sbjct: 478 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAIPDKS-ESELVSQI----IEQLIKK 528
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+++ W P+H GI GNE VD
Sbjct: 529 EKVYLAWVPAHKGIGGNEQVD 549
>gi|304347437|gb|ADM25281.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 63/163 (38%), Gaps = 28/163 (17%)
Query: 73 IPPWSSV--VPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + K+ V F V N TK G T+
Sbjct: 411 IPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETK------LGKAGYVTDRGRQ 464
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK- 189
+IN N EL AI L LQ+ + +VTDS +L I ++
Sbjct: 465 KVVSINDTTNQ----------KTELQAIYLALQD----SXLEVNIVTDSQYALGIIQAQP 510
Query: 190 -SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 511 DKSESELVSQI----IEELIXKEKVYLXWVPAHKGIGGNEQVD 549
>gi|156050867|ref|XP_001591395.1| hypothetical protein SS1G_08021 [Sclerotinia sclerotiorum 1980]
gi|154692421|gb|EDN92159.1| hypothetical protein SS1G_08021 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 487
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 69/188 (36%), Gaps = 36/188 (19%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK++ + N+ KY + I +TD S T
Sbjct: 135 YFPPWKKEVPYKVNISKLGKEE--------AAMIHNLAFKYRCKNTIAIYTDASSTLEGI 186
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
S TIN VN V++ EL+ + ++ N P K
Sbjct: 187 GIGIGIAVILPNGRISHQETINIGVNQL-------VYNGELLGVTKAIEYANSIAQPGNK 239
Query: 173 FLLVTDSMSSLQAITSKS--CNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAV 230
F + +D+ + L + + S + L K + G EIS W P H + GNE
Sbjct: 240 FKIYSDNQAGLFRLKTPSDLPGQSCLIKAIKVAEAIQNKGAEISLNWVPGHTSVQGNELA 299
Query: 231 DVAAKNPS 238
D AK +
Sbjct: 300 DSLAKEAT 307
>gi|339507451|gb|AEJ81137.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 574 ELQAIYLALQD----SGXEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 627
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 628 YLAWVPAHKGIGGNEQVD 645
>gi|49574427|gb|AAT66879.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + AEL AI L LQ+ + +V
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVPLTDTTNQKAELQAIHLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEVVSQIIEELIKKEKVYLAWVPAHKGIGGNERVD 549
>gi|242824212|ref|XP_002488213.1| hypothetical protein TSTA_005890 [Talaromyces stipitatus ATCC
10500]
gi|218713134|gb|EED12559.1| hypothetical protein TSTA_005890 [Talaromyces stipitatus ATCC
10500]
Length = 874
Score = 42.7 bits (99), Expect = 0.18, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P ++ D+ +++ + T AL+ + +
Sbjct: 521 HEVFDAELVGVATALEWALERQPLGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHKAAE 580
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAA-----KNPSPSFPPLKL 246
L G+ ++ W P H GI GNE D AA K +P F L L
Sbjct: 581 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSL 627
>gi|339507377|gb|AEJ81100.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 574 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 625
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 626 KVYLAWVPAHKGIGGNEQVD 645
>gi|327458237|gb|AEA76558.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ ++ +VTDS +L I S+ + L+++I ++ +
Sbjct: 477 TELQAIYLALQD----SGSEVNIVTDSQYALGIIQSQPDKSESELVNQI----IEQLINK 528
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
++I W P+H GI GNE VD N
Sbjct: 529 EKIYLAWVPAHKGIGGNEQVDKLVSN 554
>gi|289187215|gb|ADC92187.1| pol protein [Human immunodeficiency virus 1]
Length = 654
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ S Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRESKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIHLALQD----SGAEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLINKEKVYLAWVPAHKGIGGNEQID 648
>gi|156041116|ref|XP_001587544.1| hypothetical protein SS1G_11537 [Sclerotinia sclerotiorum 1980]
gi|154695920|gb|EDN95658.1| hypothetical protein SS1G_11537 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 401
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 76/214 (35%), Gaps = 36/214 (16%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK++ + N+ KY + I +TD S T
Sbjct: 135 YFPPWKKEVPYRVNISKLGKEE--------AAMIHNLAFKYRCKNTITIYTDASSTLEGI 186
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
S TIN VN V++ EL+ + ++ N P K
Sbjct: 187 GVGIGIVVILPNGRNSYQETINIGVNQL-------VYNGELLGVTKAIEYANSIAQPGNK 239
Query: 173 FLLVTDSMSSLQAIT--SKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAV 230
F + +D+ + L + S S + K + G EIS W P H + GNE
Sbjct: 240 FKIYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNKGAEISLNWVPGHTSVQGNELA 299
Query: 231 DVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
D AK + S + IK++ NW
Sbjct: 300 DSLAKEATKIPSSSHETSYASIGMDIKRMKSENW 333
>gi|344311764|gb|AEN04404.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++L+ +
Sbjct: 478 ELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQI----IELLIKKE 529
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 530 KVYLSWVPAHKGIGGNEQVD 549
>gi|344311756|gb|AEN04400.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y BK + AEL AI L LQ+ + +V
Sbjct: 441 YVDGAANRETKLGKAGYVTBKGRQKIVSLTETTNQKAELQAIQLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I + ++ + + + W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEIVNQIIEQLINKERVYLSWVPAHKGIGGNEQVD 549
>gi|229560381|gb|ACQ77153.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI + LQ+ +K +VTDS +L I ++ + S+I + ++L+ ++
Sbjct: 639 AELQAIQIALQD----SGSKVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIELLINKEQ 692
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 693 VYLSWVPAHKGIGGNEQVD 711
>gi|242786294|ref|XP_002480777.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218720924|gb|EED20343.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1998
Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P ++ D+ +++ + T AL+ + +
Sbjct: 1707 HEVFDAELVGVATALEWALERQPLGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHRAAE 1766
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAA-----KNPSPSFPPLKL 246
L G+ ++ W P H GI GNE D AA K +P F L L
Sbjct: 1767 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSL 1813
>gi|427797513|gb|JAA64208.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1216
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 22/146 (15%)
Query: 141 SFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIY 200
+ RL ++ AE +AI L L+ L S K ++++D++S +TS + L +I+
Sbjct: 966 ALRLPDFTPIYLAEFLAITLALRKLSSQQS-KAIIISDALSVCIHLTS--AKQSPLLRIF 1022
Query: 201 STWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSF------PPLKLCSASDYKP 254
W + E+ F+W P H GI+ NE D A + S +F P +A +K
Sbjct: 1023 --WSLVPRSLSEVRFLWVPGHAGIALNETADSLA-SASLNFPVVLVAPQFSFITAERFKR 1079
Query: 255 -LIKKIVQ---------RNWQSSWNS 270
LI KI + R+ Q +WN+
Sbjct: 1080 LLILKINETSLLHSEEFRHLQFTWNT 1105
>gi|288187850|gb|ADC42412.1| pol protein [Human immunodeficiency virus 1]
Length = 670
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTNKGRQKVVTITDTTNQKTELQAIHLALQD----SGAEVNIV 595
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAA 234
TDS +L I ++ + L+S+I ++ + ++I W P+H GI GNE +D
Sbjct: 596 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKEKIYLAWVPAHKGIGGNEHIDKLV 651
Query: 235 KN 236
N
Sbjct: 652 SN 653
>gi|226348676|gb|ACO50657.1| pol protein [Human immunodeficiency virus 1]
Length = 753
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ T+ +VTDS +L I ++ + S+I + ++ + ++I
Sbjct: 411 ELQAIHLALQD----SGTEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLIKKEKI 464
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 465 YLAWVPAHKGIGGNEQVD 482
>gi|13095433|gb|AAK12271.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 28/163 (17%)
Query: 73 IPPWSSV--VPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V PS+ H + V F V N TK G T+
Sbjct: 411 IPEWEFVNTPPSVKLWYHLETEPIVGAEAFYVDGAANRETK------LGKAGYVTDKGRQ 464
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK- 189
+I N EL AI L LQ+ + ++TDS +L I ++
Sbjct: 465 KVVSITDTTNQ----------KTELQAIHLALQD----SGLEVNIITDSQYALGIIQAQP 510
Query: 190 -SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 511 DQSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|37221242|gb|AAQ89752.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETRLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQD----SGXEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I + ++ V +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSE--SEIVNQIIEQVIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|49574431|gb|AAT66881.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ + +VTDS +L I ++ + S++ S ++ + ++
Sbjct: 477 AELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEVVSQIIEELIKKEK 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 531 VYLAWVPAHKGIGGNERVD 549
>gi|63097375|gb|AAY32087.1| protease [Human immunodeficiency virus 1]
Length = 560
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ +
Sbjct: 477 AELQAIXLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLIQK 528
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+ I W P+H GI GNE VD
Sbjct: 529 ERIYLSWVPAHKGIGGNEQVD 549
>gi|344311826|gb|AEN04435.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ +
Sbjct: 477 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLIXK 528
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+++ W P+H GI GNE VD
Sbjct: 529 EKVYLSWVPAHKGIGGNEQVD 549
>gi|9929862|dbj|BAB12104.1| pol polyprotein [Equine infectious anemia virus]
Length = 1148
Score = 42.7 bits (99), Expect = 0.19, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 116 ILCFTDGSKTENSTSCAY-TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
I +TDG K AY T N RL V AE MAI + L++ + +
Sbjct: 623 ITIYTDGGKQNGEGIAAYVTSNGKTKQKRLGPVTHQV-AERMAIQMALEDTR---DKQIN 678
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE---ISFMWCPSHCGISGNEAVD 231
+VTDS + IT L S W ++ +E + F W P H GI GN+ D
Sbjct: 679 IVTDSYYCWKNITE----GLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGIYGNQLAD 734
Query: 232 VAAK 235
AAK
Sbjct: 735 EAAK 738
>gi|49574433|gb|AAT66882.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + AEL AI L LQ+ + +V
Sbjct: 441 YVDGAANRETKIGKAGYVTNRGRQKVVSLTDTTNQKAELQAIHLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEVVSQIIEELIKKEKVYLAWVPAHKGIGGNERVD 549
>gi|255983960|gb|ACU46052.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 577 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 630
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 631 YLAWVPAHKGIGGNEQVD 648
>gi|156042792|ref|XP_001587953.1| hypothetical protein SS1G_11195 [Sclerotinia sclerotiorum 1980]
gi|154695580|gb|EDN95318.1| hypothetical protein SS1G_11195 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 396
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 76/214 (35%), Gaps = 36/214 (16%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK++ + N+ KY + I +TD S T
Sbjct: 135 YFPPWKKEVPYRVNISKLGKEE--------AAMIHNLAFKYRCKNTITIYTDASSTLEGI 186
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
S TIN VN V++ EL+ + ++ N P K
Sbjct: 187 GVGIGIVVILPNGRNSYQETINIGVNQL-------VYNGELLGVTKAIEYANSIAQPGNK 239
Query: 173 FLLVTDSMSSLQAIT--SKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAV 230
F + +D+ + L + S S + K + G EIS W P H + GNE
Sbjct: 240 FKIYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNKGAEISLNWVPGHTSVQGNELA 299
Query: 231 DVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
D AK + S + IK++ NW
Sbjct: 300 DSLAKEATKIPSSSHETSYASIGMDIKRMKSENW 333
>gi|402243584|gb|AFQ41105.1| pol protein, partial [Simian immunodeficiency virus]
Length = 297
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 152 SAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGK 211
AEL AI L LQ+ + +VTDS +L ++S C + S + ++L+ +
Sbjct: 30 QAELQAIKLALQD----SEGEVNIVTDSQYALGILSS--CPDQSESPLVQEIINLLIQKE 83
Query: 212 EISFMWCPSHCGISGNEAVD 231
+I W P+H GI GNE VD
Sbjct: 84 KIYLNWVPAHKGIGGNEEVD 103
>gi|343472635|emb|CCD15256.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 676
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNSV------FSAELMAILLCLQNLKYL---- 168
+TDGS + +S A + R VV + AE +A+ L+ L +
Sbjct: 207 WTDGSVVLDVSSGAGALVYPKEGRRKKVVLGAGSLACSYRAECVAMEAGLKRLADVIELN 266
Query: 169 --PSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGI 224
T+ ++ T+ +S A+++ + +A+L +I L LV ++F + SHCG+
Sbjct: 267 QTHRTRVVVFTNLLSLRMALSTGPAAVEDAILRRILDLILRLVRLRVSVNFQFVFSHCGV 326
Query: 225 SGNEAVDVAAK--NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTYR 281
NEA D AA+ N P P+ + ++ + ++ + S G L+T+R
Sbjct: 327 PRNEAADKAAEQGNAKPQTYPVWVTD------IVAAVERQILNEMYRSFEEGRMLRTHR 379
>gi|290629|gb|AAA43004.1| reverse transcriptase [Equine infectious anemia virus]
Length = 987
Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 116 ILCFTDGSKTENSTSCAY-TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
I +TDG K AY T N RL V AE MAI + L++ + +
Sbjct: 462 ITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALEDTR---DKQVN 517
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE---ISFMWCPSHCGISGNEAVD 231
+VTDS + IT L S W ++ +E + F W P H GI GN+ D
Sbjct: 518 IVTDSYYCWKNITE----GLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLAD 573
Query: 232 VAAK 235
AAK
Sbjct: 574 EAAK 577
>gi|339507551|gb|AEJ81187.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + +
Sbjct: 573 AELQAIXLALQD----SGSEVNIVTDSQYALGIIQAQPDQSE--SEIVNQIIEQLIQKER 626
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 627 VYLSWVPAHKGIGGNEQVD 645
>gi|156037302|ref|XP_001586378.1| hypothetical protein SS1G_12362 [Sclerotinia sclerotiorum 1980]
gi|154697773|gb|EDN97511.1| hypothetical protein SS1G_12362 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 486
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 76/214 (35%), Gaps = 36/214 (16%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK++ + N+ KY + I +TD S T
Sbjct: 135 YFPPWKKEVPYRVNISKLGKEE--------AAMIHNLAFKYRCKNTITIYTDASSTLEGI 186
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
S TIN VN V++ EL+ + ++ N P K
Sbjct: 187 GVGIGIVVILPNGRNSYQETINIGVNQL-------VYNGELLGVTKAIEYANSIAQPGNK 239
Query: 173 FLLVTDSMSSLQAIT--SKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAV 230
F + +D+ + L + S S + K + G EIS W P H + GNE
Sbjct: 240 FKIYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNKGAEISLNWVPGHTSVQGNELA 299
Query: 231 DVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
D AK + S + IK++ NW
Sbjct: 300 DSLAKEATKIPSSSHETSYASIGMDIKRMKSENW 333
>gi|11385961|gb|AAG35044.1| pol protein [Human immunodeficiency virus 1]
Length = 514
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + ++
Sbjct: 431 AELHAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLIKKEK 484
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 485 VYLSWVPAHKGIGGNEQVD 503
>gi|11385963|gb|AAG35045.1| pol protein [Human immunodeficiency virus 1]
Length = 514
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + ++
Sbjct: 431 AELHAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLIKKEK 484
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 485 VYLSWVPAHKGIGGNEQVD 503
>gi|339507425|gb|AEJ81124.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 574 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 627
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 628 YLAWVPAHKGIGGNEQVD 645
>gi|327458353|gb|AEA76616.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ + +VTDS +L I ++ + S+I + ++ + ++
Sbjct: 477 AELQAIHLALQD----SGXEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLIKKEK 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 531 VYLAWVPAHKGIGGNEQVD 549
>gi|344311685|gb|AEN04365.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 20/117 (17%)
Query: 122 GSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMS 181
G T+ T+N+ N EL AI L LQ+ ++ +VTDS
Sbjct: 456 GYVTDKGRQKXXTLNETTNQ----------KXELQAIQLALQD----SGSEVNIVTDSQY 501
Query: 182 SLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
+L I ++ + L+S+I ++ + + + W P+H GI GNE VD N
Sbjct: 502 ALGIIQAQPDKSESELVSQI----IEQLIKKERVYLSWVPAHKGIGGNEQVDKLVSN 554
>gi|11385965|gb|AAG35046.1| pol protein [Human immunodeficiency virus 1]
Length = 514
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ +
Sbjct: 431 AELQAIQLALQD----SGSQVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLIKK 482
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+++ W P+H GI GNE VD
Sbjct: 483 EKVYLSWVPAHKGIGGNEQVD 503
>gi|242775805|ref|XP_002478713.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
ATCC 10500]
gi|218722332|gb|EED21750.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
ATCC 10500]
Length = 1959
Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P ++ D+ +++ + T AL+ + +
Sbjct: 1668 HEVFDAELVGVATALEWALERQPLGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHRAAE 1727
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAA-----KNPSPSFPPLKL 246
L G+ ++ W P H GI GNE D AA K +P F L L
Sbjct: 1728 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSL 1774
>gi|885633|gb|AAC55696.1| reverse transcriptase, partial [Human immunodeficiency virus 1]
Length = 560
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 478 ELQAIQLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 531
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 532 YLAWVPAHKGIGGNEQVD 549
>gi|339507224|gb|AEJ81024.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ +
Sbjct: 573 TELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKK 624
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+++ W P+H GI GNE VD
Sbjct: 625 EKVYLAWVPAHKGIGGNEQVD 645
>gi|255984926|gb|ACU46535.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 78 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 131
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 132 YLAWVPAHKGIGGNEQVD 149
>gi|256252557|dbj|BAH97668.1| Pol [Human immunodeficiency virus 1]
Length = 1009
Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+L+ LQ+ K + +VTDS L I+++ + S I ++ + ++
Sbjct: 628 AELMAVLIALQDSKEAVN----IVTDSQYVLGIISAQPTQSD--SPIVQQIIEELTKKEQ 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 682 VYLTWVPAHKGIGGNEKID 700
>gi|13095141|gb|AAK12153.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I +K + S++ S ++ + +++
Sbjct: 480 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAKPDQSE--SELVSQIIEQLIKKEKV 533
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 534 YLAWVPAHKGIGGNEQVD 551
>gi|323838|gb|AAB59862.1| pol polyprotein [Equine infectious anemia virus]
Length = 1138
Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 116 ILCFTDGSKTENSTSCAY-TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
I +TDG K AY T N RL V AE MAI + L++ + +
Sbjct: 613 ITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALEDTR---DKQVN 668
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE---ISFMWCPSHCGISGNEAVD 231
+VTDS + IT L S W ++ +E + F W P H GI GN+ D
Sbjct: 669 IVTDSYYCWKNITE----GLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLAD 724
Query: 232 VAAK 235
AAK
Sbjct: 725 EAAK 728
>gi|339507517|gb|AEJ81170.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 574 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDQSE--SEIVSQIIEQLIKKEKV 627
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 628 YLAWVPAHKGIGGNEQVD 645
>gi|130595|sp|P11204.1|POL_EIAV9 RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Integrase; Short=IN
Length = 1146
Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 116 ILCFTDGSKTENSTSCAY-TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
I +TDG K AY T N RL V AE MAI + L++ + +
Sbjct: 621 ITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALEDTR---DKQVN 676
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE---ISFMWCPSHCGISGNEAVD 231
+VTDS + IT L S W ++ +E + F W P H GI GN+ D
Sbjct: 677 IVTDSYYCWKNITE----GLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLAD 732
Query: 232 VAAK 235
AAK
Sbjct: 733 EAAK 736
>gi|339507621|gb|AEJ81222.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ + +VTDS +L I + + L+S+I ++ +
Sbjct: 573 AELQAIYLALQD----SGLEVNIVTDSQYALGIIQAHPDKSESELVSQI----IEQLINK 624
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
+++ W P+H GI GNE VD N
Sbjct: 625 EKVYLAWVPAHKGIGGNEQVDKLVSN 650
>gi|289187302|gb|ADC92230.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y +K + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIYLALQD----SGLEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + ++I W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSE--SEVVSQIIEELIKKEKIYLAWVPAHKGIGGNEQVD 648
>gi|156050917|ref|XP_001591420.1| hypothetical protein SS1G_08046 [Sclerotinia sclerotiorum 1980]
gi|154692446|gb|EDN92184.1| hypothetical protein SS1G_08046 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1660
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 76/214 (35%), Gaps = 36/214 (16%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK++ + N+ KY + I +TD S T
Sbjct: 1308 YFPPWKKEVPYRVNISKLGKEE--------AAMIHNLAFKYRCKNTITIYTDASSTLEGI 1359
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
S TIN VN V++ EL+ + ++ N P K
Sbjct: 1360 GVGIGIVVILPNGRNSYQETINIGVNQL-------VYNGELLGVTKAIEYANSIAQPGNK 1412
Query: 173 FLLVTDSMSSLQAIT--SKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAV 230
F + +D+ + L + S S + K + G EIS W P H + GNE
Sbjct: 1413 FKIYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNKGAEISLNWVPGHTSVQGNELA 1472
Query: 231 DVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
D AK + S + IK++ NW
Sbjct: 1473 DSLAKEATKIPSSSHETSYASIGMDIKRMKSENW 1506
>gi|156254409|gb|ABU62694.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I +K + L+++I ++ +
Sbjct: 38 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAKPDKSESELVNQIIEQLINK----E 89
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 90 KVYLTWVPAHKGIGGNEQVD 109
>gi|13095139|gb|AAK12152.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I +K + L+S+I ++ + +
Sbjct: 480 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAKPDQSESELVSQI----IEQLIKKE 531
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 532 KVYLAWVPAHKGIGGNEQVD 551
>gi|417517|sp|P32542.1|POL_EIAVC RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Integrase; Short=IN
Length = 1146
Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 116 ILCFTDGSKTENSTSCAY-TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
I +TDG K AY T N RL V AE MAI + L++ + +
Sbjct: 621 ITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALEDTR---DKQVN 676
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE---ISFMWCPSHCGISGNEAVD 231
+VTDS + IT L S W ++ +E + F W P H GI GN+ D
Sbjct: 677 IVTDSYYCWKNITE----GLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLAD 732
Query: 232 VAAK 235
AAK
Sbjct: 733 EAAK 736
>gi|2258475|gb|AAC71057.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 478 ELQAIHLALQDA----GLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 531
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 532 YLAWVPAHKGIGGNEQVD 549
>gi|344311868|gb|AEN04456.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 20/112 (17%)
Query: 122 GSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMS 181
G T+ T+N+ N EL AI L LQ+ +K +VTDS
Sbjct: 456 GYVTDRGRQKIITLNETTNQ----------KTELQAIHLALQD----SGSKVNIVTDSQY 501
Query: 182 SLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+L I ++ + L+++I ++ + ++I W P+H GI GNE VD
Sbjct: 502 ALGIIQAQPDKSESELVNQI----IEQLIKKEKIYLSWVPAHKGIGGNEQVD 549
>gi|339507439|gb|AEJ81131.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 574 ELQAIHLALQD----SGAEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 627
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 628 YLAWVPAHKGIGGNEQVD 645
>gi|427780325|gb|JAA55614.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 652
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 115 RILCFTDGSKTENSTSCAYTI--------NKNVNSFRLNVVNSVFSAELMAILLCLQNLK 166
+ + +TD S SC Y I + + L+ N V S E+++I+ L++
Sbjct: 377 QAVAYTDASFVAPRGSCGYAIYHPQLSAPETHTSGPYLHPPN-VLSLEVLSIVHALESFS 435
Query: 167 YLPST-KFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFM-WCPSHCGI 224
LPS ++ L +DS ++++ I +++ ++L ++ + A F+ W P H GI
Sbjct: 436 SLPSVPEYTLFSDSYAAIRHIQNRTLPHSLEQEVERA---VSALQPSTVFLRWVPGHSGI 492
Query: 225 SGNEAVDVAAKN 236
GNE A++
Sbjct: 493 DGNELAHRLARD 504
>gi|339507607|gb|AEJ81215.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS ++ I ++ + S++ S ++ + +++
Sbjct: 574 ELQAILLALQD----SGLEVNIVTDSQYAMGIIQAQPDKSE--SELVSLIIEQLIKKEKV 627
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 628 YLAWVPAHKGIGGNEQVD 645
>gi|156051540|ref|XP_001591731.1| hypothetical protein SS1G_07177 [Sclerotinia sclerotiorum 1980]
gi|154704955|gb|EDO04694.1| hypothetical protein SS1G_07177 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 975
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 66/175 (37%), Gaps = 34/175 (19%)
Query: 74 PPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDR--ILCFTDGSKTENSTSC 131
PPW P +S K+D L NI K+ D+ +TD S TE
Sbjct: 633 PPWKRETPFRVNISNSSKED--------AAILHNIVFKHRDKDTTYIYTDASSTEKGI-- 682
Query: 132 AYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPST--KFLLVTDSMSSLQAITSK 189
V++ EL + ++ + T KF + +D+ + L + +
Sbjct: 683 ------------------VYNGELFGVTRAIEYASSIAYTGQKFKIYSDNQAGLYRLKTP 724
Query: 190 SCNNALLSKIYSTWLDLV--ACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFP 242
S + ++I + V A G EIS W P H + GNE D AK + P
Sbjct: 725 SDHPGQANQIRAIKAAEVIRAKGAEISLNWVPGHTSVEGNELADKLAKEATTIQP 779
>gi|343475922|emb|CCD12825.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1224
Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 171 TKFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
T+ + +TDS+ L A+++ +A+L +I+ L LV ++F + SHCG+ NE
Sbjct: 512 TRVVALTDSLLLLVALSTGPAVVEDAILRRIWDLILRLVRLRVSVNFQFVFSHCGVPRNE 571
Query: 229 AVDVAAK--NPSPSFPP 243
A D AA+ N P P
Sbjct: 572 AADKAAEQGNAKPQMYP 588
>gi|255984894|gb|ACU46519.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ + +V
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRXKVVXXTDTTNQKTELQAIYLALQD----SGLEVNIV 96
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 97 TDSQYALGIIQAQPDRSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 149
>gi|226348546|gb|ACO50592.1| pol protein [Human immunodeficiency virus 1]
Length = 399
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 20/121 (16%)
Query: 119 FTDGS--KTENSTSCAYTINKNVNSFRLNVVNSVFSA----ELMAILLCLQNLKYLPSTK 172
+ DG+ + S Y INK R VV+ + EL AI L LQ+ +
Sbjct: 85 YVDGAANRETKSGKAGYVINKG----RQKVVSLTDTTNQKIELQAIYLALQD----SGLE 136
Query: 173 FLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAV 230
+VTDS +L I ++ + L+++I ++ + +++ W P+H GI GNE V
Sbjct: 137 VNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLIKKEKVYLAWVPAHKGIGGNEQV 192
Query: 231 D 231
D
Sbjct: 193 D 193
>gi|11385969|gb|AAG35048.1| pol protein [Human immunodeficiency virus 1]
Length = 514
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ +
Sbjct: 431 AELHAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLIKK 482
Query: 211 KEISFMWCPSHCGISGNEAVD 231
++I W P+H GI GNE VD
Sbjct: 483 EKIYLSWVPAHKGIGGNEQVD 503
>gi|344311746|gb|AEN04395.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S++ + ++ + ++
Sbjct: 477 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVNQIIEQLINKEK 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 531 IYLSWVPAHKGIGGNEQVD 549
>gi|339507180|gb|AEJ81002.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK ++ EL AI L LQ+ + +V
Sbjct: 537 YVDGAANRETKLGKAGYVTNKGRQKVVTLPDSTNQKTELQAIXLALQD----SGAEVNIV 592
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 593 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 645
>gi|256252547|dbj|BAH97659.1| Pol [Human immunodeficiency virus 1]
Length = 1009
Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+L+ LQ+ K + +VTDS L I+++ + S I ++ + ++
Sbjct: 628 AELMAVLIALQDSKEAVN----IVTDSQYVLGIISAQPTQSD--SPIVQQIIEELTKKEQ 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 682 VYLTWVPAHKGIGGNEKID 700
>gi|344311627|gb|AEN04336.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 20/112 (17%)
Query: 122 GSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMS 181
G T+ T+N+ N AEL AI L LQ+ ++ +VTDS
Sbjct: 456 GYVTDKGRQKIVTLNETTNQ----------KAELQAIQLALQD----SGSEVNIVTDSQY 501
Query: 182 SLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+L I ++ + L+++I ++ + + I W P+H GI GNE +D
Sbjct: 502 ALGIIQAQPDKSESELVNQI----IEQLINKERIYLSWVPAHKGIGGNEQID 549
>gi|373881396|gb|AEY78034.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 24/161 (14%)
Query: 73 IPPWSSV-VPSIDTSLHSGKKDNVSPS-VFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + + +KD ++ + F V N TK G T+
Sbjct: 510 IPEWEFVNTPPLVKLWYQLEKDPIAGAETFYVDGAANRETKLGKA------GYVTDRGRQ 563
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKS 190
TIN+ N EL AI L LQ+ ++ +VTDS +L I ++
Sbjct: 564 KIITINETTNQ----------KTELQAICLALQD----SGSEVNIVTDSQYALGIIQAQP 609
Query: 191 CNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ S++ + ++ + + + W P+H GI GNE VD
Sbjct: 610 DKSE--SELVNQIIEQLIRKERVYLSWVPAHKGIGGNEQVD 648
>gi|339507577|gb|AEJ81200.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ +
Sbjct: 573 TELQAIXLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKK 624
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+++ W P+H GI GNE VD
Sbjct: 625 EKVYLAWVPAHKGIGGNEQVD 645
>gi|306478227|gb|ADM89488.1| pol protein [Human immunodeficiency virus 1]
Length = 800
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ +
Sbjct: 429 AELQAIQLALQD----SGSEVNIVTDSQYALGVIQAQPDKSESELVNQI----IEQLIKK 480
Query: 211 KEISFMWCPSHCGISGNEAVD 231
++I W P+H GI GNE VD
Sbjct: 481 EKIYLSWVPAHKGIGGNEQVD 501
>gi|255984632|gb|ACU46388.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS SL I ++ + L+++I ++ + K
Sbjct: 78 ELQAIHLALQD----SGSEVNIVTDSQYSLGIIQAQPDKSESELVNQI----IEQLIKKK 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|49574394|gb|AAT66866.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 24/161 (14%)
Query: 73 IPPWSSV--VPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + K+ V F V N TK + C TD + + S
Sbjct: 411 IPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKL-GKAGCVTDKGR-QKVVS 468
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKS 190
T N+ EL AI L LQ+ ++ +VTDS +L I ++
Sbjct: 469 LTDTTNQK--------------TELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQP 510
Query: 191 CNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ S++ + ++ + +++ W P+H GI GNE VD
Sbjct: 511 DKSG--SELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|242765587|ref|XP_002341005.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218724201|gb|EED23618.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1091
Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P + D+ +++ + T AL+ + +
Sbjct: 800 HEVFDAELVGVATALEWALERQPLGPIWVFLDAQNAIDRLRSTRPGPGQALVLRAHKAAE 859
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAA-----KNPSPSFPPLKL 246
L G+ ++ W P H GI GNE D AA K +P F L L
Sbjct: 860 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSL 906
>gi|242775815|ref|XP_002478715.1| hypothetical protein TSTA_089910 [Talaromyces stipitatus ATCC 10500]
gi|218722334|gb|EED21752.1| hypothetical protein TSTA_089910 [Talaromyces stipitatus ATCC 10500]
Length = 1141
Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P ++ D+ +++ + T AL+ + +
Sbjct: 996 HEVFDAELVGVATALEWALERQPLGPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHRAAE 1055
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAA-----KNPSPSFPPLKL 246
L G+ ++ W P H GI GNE D AA K +P F L L
Sbjct: 1056 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSL 1102
>gi|403297220|ref|XP_003939475.1| PREDICTED: ribonuclease H1 [Saimiri boliviensis boliviensis]
Length = 284
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 66/183 (36%), Gaps = 26/183 (14%)
Query: 68 PYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTEN 127
PY KH+ P P + + S D+V Y D C +
Sbjct: 111 PYAKHLKPSVEPAPPVSRDMFSYMGDSV--------------VVYTDGCCCSNGRRRPRA 156
Query: 128 STSCAYTINKNVN-SFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAI 186
+ +N RL + AE+ A ++ K K +L TDSM ++ I
Sbjct: 157 GIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKAQNINKLVLYTDSMFTINGI 216
Query: 187 TS-----------KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK 235
T+ S +++K L+ + G +I +M P H G +GNE D A+
Sbjct: 217 TNWVQGWKKNGWKTSTGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFTGNEEADRLAR 276
Query: 236 NPS 238
+
Sbjct: 277 EGA 279
>gi|344311728|gb|AEN04386.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S++ + ++ + +
Sbjct: 477 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVNQIIEQLINKER 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 531 IYLSWVPAHKGIGGNEQVD 549
>gi|255984540|gb|ACU46342.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 20/121 (16%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSA----ELMAILLCLQNLKYLPSTK 172
+ DG+ + Y NK R VV+ + EL AI L LQ+ +
Sbjct: 41 YVDGAANRETKJGKAGYVTNKG----RQKVVSXTDTTNQKTELQAIYLALQD----SGLE 92
Query: 173 FLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAV 230
+VTDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE V
Sbjct: 93 VNIVTDSQYALGIIQAQPDRSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQV 148
Query: 231 D 231
D
Sbjct: 149 D 149
>gi|37221510|gb|AAQ89883.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + VTDS +L I ++ + S++ S ++ + +++
Sbjct: 577 ELQAILLALQD----SGLEVNXVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKV 630
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 631 YLAWVPAHKGIGGNEQVD 648
>gi|344311846|gb|AEN04445.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ + +VTDS +L I ++ + S+I + ++ + +
Sbjct: 477 AELQAIQLALQD----SEAEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLINKER 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 531 VYLSWVPAHKGIGGNEQVD 549
>gi|344311625|gb|AEN04335.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 20/112 (17%)
Query: 122 GSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMS 181
G T+ T+N+ N AEL AI L LQ+ ++ +VTDS
Sbjct: 456 GYVTDKGRQKIVTLNETTNQ----------KAELQAIQLALQD----SGSEVNIVTDSQY 501
Query: 182 SLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+L I ++ + L+++I ++ + + I W P+H GI GNE +D
Sbjct: 502 ALGIIQAQPDKSESELVNQI----IEQLINKERIYLSWVPAHKGIGGNEQID 549
>gi|336088093|dbj|BAK39906.1| ribonuclease H1 [Cricetulus griseus]
Length = 285
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 11/109 (10%)
Query: 141 SFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----------K 189
FRL + AE+ A + K +K +L TDSM ++ ITS
Sbjct: 172 GFRLPGRQTNQRAEIHAACKAIMQAKAQNISKLVLYTDSMFTINGITSWVQGWKKNGWRT 231
Query: 190 SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
S +++K LD + G +I +M P H G GNE D A+ +
Sbjct: 232 STGKDVINKEDFMELDELTRGMDIKWMHIPGHSGFVGNEEADRLAREGA 280
>gi|306477699|gb|ADM89224.1| pol protein [Human immunodeficiency virus 1]
Length = 827
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ +
Sbjct: 456 AELQAIQLALQD----SGSEVNIVTDSQCALGVIQAQPDKSESELVNQI----IEQLIKK 507
Query: 211 KEISFMWCPSHCGISGNEAVD 231
++I W P+H GI GNE VD
Sbjct: 508 EKIYLSWVPAHKGIGGNEQVD 528
>gi|255984028|gb|ACU46086.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 577 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKV 630
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 631 YLTWVPAHKGIGGNEQVDKLVSN 653
>gi|156052939|ref|XP_001592396.1| hypothetical protein SS1G_06637 [Sclerotinia sclerotiorum 1980]
gi|154704415|gb|EDO04154.1| hypothetical protein SS1G_06637 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1249
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 78/211 (36%), Gaps = 30/211 (14%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKTENST 129
+ PPW VP GK+ + + N+ KY + I +TD S T
Sbjct: 71 YFPPWKKEVPYKVNISKLGKE--------EAAMIHNLAFKYRCKNTITIYTDASSTLEGI 122
Query: 130 SCAYTINKNVNSFRL--------NVVNSVFSAELMAILLCLQ--NLKYLPSTKFLLVTDS 179
I + + R+ V V++ EL+ + ++ N P KF + +D+
Sbjct: 123 GVGIGIVVILPNGRISHQEIINIGVNQLVYNGELLGVTKAIEYANSIAQPGNKFKIYSDN 182
Query: 180 MSSL------QAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVA 233
+ L + +SC + + + G EIS W P H + GNE D
Sbjct: 183 QAGLFRLKTPSDLPGQSCQIKAIKAAEA----IQNKGAEISLNWVPGHTSVQGNELADSL 238
Query: 234 AKNPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
AK + P S + IK++ NW
Sbjct: 239 AKEATKIPSPSHETSYASIGMDIKRMKSENW 269
>gi|327458291|gb|AEA76585.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y ++ + EL AI L LQ+ ++ +V
Sbjct: 441 YVDGAANRETKLGKAGYVTDRGXQKVVSXTDTTNQKTELQAIXLALQD----SGSEVNIV 496
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAA 234
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDRSESELVSQI----IEQLIKKEKVYLSWVPAHKGIGGNEQVDKLV 552
Query: 235 KN 236
N
Sbjct: 553 SN 554
>gi|13095166|gb|AAK12164.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 562
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I +K + L+S+I ++ + +
Sbjct: 480 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAKPDQSESELVSQI----IEQLIKKE 531
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 532 KVYLAWVPAHKGIGGNEQVD 551
>gi|344311880|gb|AEN04462.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ + +VTDS +L I ++ + L+++I ++ +
Sbjct: 477 AELQAIQLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLVNK 528
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+ I W P+H GI GNE VD
Sbjct: 529 ERIYLAWVPAHKGIGGNEQVD 549
>gi|255984946|gb|ACU46545.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIYLALQD----SGLEVNIVTDSQYALGXIQAQPDKSESELVSQI----IEQLIXKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|156051534|ref|XP_001591728.1| hypothetical protein SS1G_07174 [Sclerotinia sclerotiorum 1980]
gi|154704952|gb|EDO04691.1| hypothetical protein SS1G_07174 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 947
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 78/218 (35%), Gaps = 44/218 (20%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK++ + N+ KY + I +TD S T
Sbjct: 596 YFPPWKKEVPYKVNISKLGKEE--------AAMIHNLAFKYRCKNTITIYTDASSTLEGI 647
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
N S TIN VN V++ EL+ + ++ N P K
Sbjct: 648 GIGIGIAVILPNNRISHQETINIGVNQL-------VYNGELLGVAKAIEYANSIAQPGNK 700
Query: 173 FLLVTDSMSSL------QAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226
F + +D+ + L + +SC + + + G EIS W P H + G
Sbjct: 701 FKIYSDNQAGLFRLKTPSDLPGQSCQIKAIKAAEA----IQNKGAEISLNWVPGHTSVQG 756
Query: 227 NEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
NE D AK + S + IK++ NW
Sbjct: 757 NELADSLAKEATKIPSSSHETSYASIGMDIKRMKSENW 794
>gi|37221464|gb|AAQ89861.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 577 ELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEVVSQIIEQLIKKEKV 630
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 631 YLAWVPAHKGIGGNEQVD 648
>gi|327458363|gb|AEA76621.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y N+ + EL AI L LQ+ ++ +V
Sbjct: 441 YVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQD----SGSEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I S ++ + + + W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SEIVSKIIEQLINKERVYLAWVPAHKGIGGNEXVD 549
>gi|255984176|gb|ACU46160.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ S ++ + ++I
Sbjct: 577 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIXKEKI 630
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 631 YLAWVPAHKGIGGNEQVD 648
>gi|156254405|gb|ABU62692.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ T+ +VTDS +L I ++ + S++ + ++ + +++
Sbjct: 38 ELQAIQLALQD----SETEVNIVTDSQYALGIIQAQPDKSE--SELVNQIIEQLIKKEKV 91
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 92 YLAWVPAHKGIGGNEQVD 109
>gi|156254399|gb|ABU62689.1| RNase H [Human immunodeficiency virus 1]
Length = 120
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ T+ +VTDS +L I ++ + S+I + ++ + + +
Sbjct: 38 ELHAIQLALQD----SGTEVNIVTDSQYALGIIQAQPDRSE--SEIVNQIIEQLIKKERV 91
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 92 YLSWVPAHKGIGGNEQVD 109
>gi|425781333|gb|EKV19307.1| hypothetical protein PDIG_03370 [Penicillium digitatum PHI26]
Length = 648
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 15/104 (14%)
Query: 149 SVFSAELMAILLCLQNLKY-----------LPSTKFLLVTDSMSSLQAITSKSCNNALLS 197
+V++AEL AI + L+ ++Y L ++ TD+ ++L+AI + + +
Sbjct: 314 TVYAAELHAIEMALEVIQYQFTSNDDWRERLAERGAVIFTDNQAALKAIKNPKMPSGQVY 373
Query: 198 KIYSTWLDLVACGK---EISFMWCPSHCGISGNEAVDVAAKNPS 238
S L L C K ++ W P+H GI GNE VD+ AK+ +
Sbjct: 374 LEGSLRL-LDWCSKSKIQVELRWIPAHEGIPGNEHVDMLAKSAA 416
>gi|37221460|gb|AAQ89859.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 577 ELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEVVSQIIEQLIKKEKV 630
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 631 YLAWVPAHKGIGGNEQVD 648
>gi|327458343|gb|AEA76611.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 478 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIXKE 529
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 530 KVYLAWVPAHKGIGGNEQVD 549
>gi|9944518|gb|AAG02702.1|AF247394_2 pol protein [Equine infectious anemia virus]
Length = 1146
Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 116 ILCFTDGSKTENSTSCAY-TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
I +TDG K AY T N RL V AE MAI + L++ + +
Sbjct: 621 ITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALEDTR---DKQVN 676
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE---ISFMWCPSHCGISGNEAVD 231
+VTDS + IT L S W ++ +E + F W P H GI GN+ D
Sbjct: 677 IVTDSYYCWKNITE----GLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGICGNQLAD 732
Query: 232 VAAK 235
AAK
Sbjct: 733 EAAK 736
>gi|344311673|gb|AEN04359.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 122 GSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMS 181
G T+ TIN+ N EL AI L LQ+ ++ +VTDS
Sbjct: 456 GYVTDRGRQKVITINETTNQ----------KTELQAIQLALQD----SGSEVNIVTDSQY 501
Query: 182 SLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+L I ++ + L+++I ++ + + + W P+H GI GNE VD
Sbjct: 502 ALGIIQAQPDKSESELVNQI----IEQLIKKERVYLSWVPAHKGIGGNEQVD 549
>gi|242825350|ref|XP_002488422.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712240|gb|EED11666.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1998
Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P + D+ +++ + T AL+ + +
Sbjct: 1707 HEVFDAELVGVATALEWALERQPLGPIWVFLDAQNAIDRLRSTRPGPGQALVLRAHKAAE 1766
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAA-----KNPSPSFPPLKL 246
L G+ ++ W P H GI GNE D AA K +P F L L
Sbjct: 1767 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSL 1813
>gi|344311744|gb|AEN04394.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ +
Sbjct: 477 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLINK 528
Query: 211 KEISFMWCPSHCGISGNEAVD 231
++I W P+H GI GNE VD
Sbjct: 529 EKIYLSWVPAHKGIGGNEQVD 549
>gi|373881381|gb|AEY78024.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
EL AI L LQ+ ++ +VTDS +L I ++ + S+I S ++ + +
Sbjct: 576 TELQAIYLALQD----SGSEVNIVTDSQYALGIIHAQPDKSE--SEIVSQIIEQLIQKER 629
Query: 213 ISFMWCPSHCGISGNEAVDVAAKN 236
+ W P+H GI GNE VD N
Sbjct: 630 VYLSWVPAHKGIGGNEQVDKLVSN 653
>gi|255984828|gb|ACU46486.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDQSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
+I W P+H GI GNE VD
Sbjct: 130 KIYLAWVPAHKGIGGNEQVD 149
>gi|226348662|gb|ACO50650.1| pol protein [Human immunodeficiency virus 1]
Length = 757
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 411 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 462
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 463 KVYLAWVPAHKGIGGNEQVD 482
>gi|37221462|gb|AAQ89860.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 577 ELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEVVSQIIEQLIKKEKV 630
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 631 YLAWVPAHKGIGGNEQVD 648
>gi|344311882|gb|AEN04463.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ + +VTDS +L I ++ + L+++I ++ +
Sbjct: 477 AELQAIQLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLVNK 528
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+ I W P+H GI GNE VD
Sbjct: 529 ERIYLAWVPAHKGIGGNEQVD 549
>gi|255984906|gb|ACU46525.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|255984776|gb|ACU46460.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ T+ +VTDS +L I ++ + L+++I ++ + +
Sbjct: 78 ELQAIXLALQD----SGTEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLINKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|37221506|gb|AAQ89881.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + VTDS +L I ++ + S++ S ++ + +++
Sbjct: 577 ELQAILLALQD----SGLEVNXVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKV 630
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 631 YLAWVPAHKGIGGNEQVD 648
>gi|425774322|gb|EKV12630.1| C6 transcription factor, putative [Penicillium digitatum PHI26]
Length = 579
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 16/71 (22%)
Query: 213 ISFMWCPSHCGISGNEAVDVAAKNPS--------------PSFPPLKLCSASDYKPLIKK 258
++ W P+H G+SGNE D AK + P P ++L +A+ K +++
Sbjct: 361 VTIRWIPAHVGVSGNEYADTEAKGAALLGAGIGTTTGSGDPGRPTIRLAAAA--KRAVRQ 418
Query: 259 IVQRNWQSSWN 269
V+ W+ W
Sbjct: 419 RVRERWERQWE 429
>gi|344311641|gb|AEN04343.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
EL AI L LQ+ ++ +VTDS +L I ++ N+ S++ + ++ + +
Sbjct: 477 TELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDNSE--SELVNQIIEQLIQKER 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 531 VYLSWVPAHKGIGGNEQVD 549
>gi|255984808|gb|ACU46476.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I S ++ + ++I
Sbjct: 78 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKI 131
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 132 YLAWVPAHKGIGGNEQVD 149
>gi|37221432|gb|AAQ89845.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 119 FTDGS--KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + S Y ++ + EL AI L LQ+ ++ +V
Sbjct: 540 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQD----SGSEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
TDS +L I ++ + S++ S ++ + + + W P+H GI GNE VD N
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLINKERVYLAWVPAHKGIGGNEQVDKLVSN 653
>gi|344311725|gb|AEN04385.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ +
Sbjct: 477 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLINK 528
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+ I W P+H GI GNE VD
Sbjct: 529 ERIYLSWVPAHKGIGGNEQVD 549
>gi|344311639|gb|AEN04342.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
EL AI L LQ+ ++ +VTDS +L I ++ N+ S++ + ++ + +
Sbjct: 477 TELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDNSE--SELVNQIIEQLIQKER 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 531 VYLSWVPAHKGIGGNEQVD 549
>gi|354495311|ref|XP_003509774.1| PREDICTED: ribonuclease H1 [Cricetulus griseus]
gi|344254547|gb|EGW10651.1| Ribonuclease H1 [Cricetulus griseus]
Length = 285
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 11/109 (10%)
Query: 141 SFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----------K 189
FRL + AE+ A + K +K +L TDSM ++ ITS
Sbjct: 172 GFRLPGRQTNQRAEIHAACKAIMQAKAQNISKLVLYTDSMFTINGITSWVQGWKKNGWRT 231
Query: 190 SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
S +++K LD + G +I +M P H G GNE D A+ +
Sbjct: 232 STGKDVINKEDFMELDELTRGMDIKWMHIPGHSGFVGNEEADRLAREGA 280
>gi|156048334|ref|XP_001590134.1| hypothetical protein SS1G_08898 [Sclerotinia sclerotiorum 1980]
gi|154693295|gb|EDN93033.1| hypothetical protein SS1G_08898 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 401
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 80/220 (36%), Gaps = 36/220 (16%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK++ + N+ KY + I +TD S T
Sbjct: 49 YFPPWKKEVPYKVNISKLGKEE--------AAMIHNLAFKYRCKNTITIYTDASSTLEGI 100
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
S TIN VN V++ EL+ ++ ++ N P K
Sbjct: 101 GIGIGIAVILPNGRISHQETINIGVNQL-------VYNGELLGVVKAIEYANSIAQPGNK 153
Query: 173 FLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAV 230
F + +D+ + L + + S + K + G EIS W P H + GNE
Sbjct: 154 FKIYSDNQAGLFRLKTPSDLPGQSCQIKAIKAAEAIQNKGAEISLNWVPGHTSVQGNELA 213
Query: 231 DVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
D AK + S + IK++ NW + N+
Sbjct: 214 DSLAKEATKIPSSSHETSYASIGMDIKRMKSENWITILNT 253
>gi|119181104|ref|XP_001241800.1| hypothetical protein CIMG_05696 [Coccidioides immitis RS]
Length = 148
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 149 SVFSAELMAILLCLQNLKYLPST-----KFLLVTDSMSSLQAI---TSKSCNNALLSKIY 200
+V++ EL ++L L+ + L +T K + T++ +++QAI S L+ +
Sbjct: 59 TVYAVELRGLVLALEIILDLHATGTTPRKCAIFTNNQAAIQAIWNPKHSSGKYILIEAVQ 118
Query: 201 STWLDLVA-CGKEISFMWCPSHCGISGNEAVD 231
+ LD++ G E+ F W P+H G+ GNE D
Sbjct: 119 A--LDMLQNLGWEVQFQWIPAHVGVLGNEEAD 148
>gi|344311860|gb|AEN04452.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ +
Sbjct: 477 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESXLVNQI----IEQLIXK 528
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+ + W P+H GI GNE VD
Sbjct: 529 ERVYLSWVPAHKGIGGNEQVD 549
>gi|226348744|gb|ACO50691.1| pol protein [Human immunodeficiency virus 1]
Length = 746
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 405 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 458
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 459 YLAWVPAHKGIGGNEQVD 476
>gi|9626532|ref|NP_056902.1| pol polyprotein [Equine infectious anemia virus]
gi|2801512|gb|AAC82600.1| pol polyprotein [Equine infectious anemia virus]
gi|2905988|gb|AAC03761.1| pol [Equine infectious anemia virus]
Length = 1138
Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 116 ILCFTDGSKTENSTSCAY-TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
I +TDG K AY T N RL V AE MAI + L++ + +
Sbjct: 613 ITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALEDTR---DKQVN 668
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE---ISFMWCPSHCGISGNEAVD 231
+VTDS + IT L S W ++ +E + F W P H GI GN+ D
Sbjct: 669 IVTDSYYCWKNITE----GLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGIYGNQLAD 724
Query: 232 VAAK 235
AAK
Sbjct: 725 EAAK 728
>gi|339507693|gb|AEJ81258.1| pol protein [Human immunodeficiency virus 1]
Length = 650
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ B+ Y ++ + EL AI L LQ+ ++ +V
Sbjct: 531 YVDGAANRBTKIGKAGYVTDRGRQKIXTLNETTNQKTELQAIHLALQD----SGSEVNIV 586
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ N+ S++ + ++ + + + W P+H GI GNE VD
Sbjct: 587 TDSQYALGIIQAQPDNSE--SELVNQIIEQLIQKERVYLSWVPAHKGIGGNEQVD 639
>gi|302594734|gb|ADL59555.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI + LQ + +VTDS +L I ++ + S+I S ++ + +
Sbjct: 37 AELQAIQIALQE----SGPEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIQKER 90
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 91 VYLSWVPAHKGIGGNEQVD 109
>gi|255984908|gb|ACU46526.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDQSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
+I W P+H GI GNE VD
Sbjct: 130 KIYLAWVPAHKGIGGNEQVD 149
>gi|3248895|gb|AAC24015.1| polymerase polyprotein [Equine infectious anemia virus]
gi|3248902|gb|AAC24021.1| polymerase polyprotein [Equine infectious anemia virus]
Length = 1146
Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 116 ILCFTDGSKTENSTSCAY-TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
I +TDG K AY T N RL V AE MAI + L++ + +
Sbjct: 621 ITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALEDTR---DKQVN 676
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE---ISFMWCPSHCGISGNEAVD 231
+VTDS + IT L S W ++ +E + F W P H GI GN+ D
Sbjct: 677 IVTDSYYCWKNITE----GLGLEGPQSPWWPIIQNIREKEIVYFAWVPGHKGIYGNQLAD 732
Query: 232 VAAK 235
AAK
Sbjct: 733 EAAK 736
>gi|13891870|gb|AAG50314.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 478 ELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 529
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 530 KVYLAWVPAHKGIGGNEQVDKLVSN 554
>gi|344311675|gb|AEN04360.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 122 GSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMS 181
G T+ TIN+ N EL AI L LQ+ ++ +VTDS
Sbjct: 456 GYVTDRGRQKVITINETTNQ----------KTELQAIQLALQD----SGSEVNIVTDSQY 501
Query: 182 SLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+L I ++ + L+++I ++ + + + W P+H GI GNE VD
Sbjct: 502 ALGIIQAQPDKSESELVNQI----IEQLIKKERVYLSWVPAHKGIGGNEQVD 549
>gi|156063284|ref|XP_001597564.1| hypothetical protein SS1G_01758 [Sclerotinia sclerotiorum 1980]
gi|154697094|gb|EDN96832.1| hypothetical protein SS1G_01758 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1275
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 73/181 (40%), Gaps = 28/181 (15%)
Query: 116 ILCFTDGSKTE---NSTSCAYTINK-----NVNSFRLNVVNSVFSAELMAILLCLQNLKY 167
I F+DGSK+E +T + I++ +SF L VF AE A +
Sbjct: 977 IQIFSDGSKSESKDGATGGGFVISQFDIQIAHHSFSLGTNAEVFDAEATAAVAGAAKALT 1036
Query: 168 LPSTKFLLVTDSMSSLQ----AITSKSCNNALLSKIYSTWLDLVAC------------GK 211
L STK L TD L A+ S N +++ +L L GK
Sbjct: 1037 LASTK--LATDLWIFLDNHEAALRLGSHFNGSSQRVFEDFLKLTQAWAVRPRLPHTSPGK 1094
Query: 212 EISFMWCPSHCGISGNEAVDVAAKNPSP-SFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
I W P H I GNE D AAK + FP +C + K +I+ + + WN+
Sbjct: 1095 -IRVRWVPGHLDIPGNEIADKAAKEGTKLPFPLNPICMLASLKRMIRTRANKADEQLWNT 1153
Query: 271 V 271
V
Sbjct: 1154 V 1154
>gi|12407063|emb|CAC24829.1| pol [Human immunodeficiency virus 1]
Length = 225
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKS--CNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++S + L+++I ++ + +
Sbjct: 149 ELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQSDKSESELVNQI----IEQLIKKE 200
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 201 KVYLSWVPAHKGIGGNEQVD 220
>gi|339507300|gb|AEJ81062.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 574 ELQAIHLALQD----SGAEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLINKEKV 627
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 628 YLAWVPAHKGIGGNEQVD 645
>gi|327458293|gb|AEA76586.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 478 ELQAIXLALQD----SGSEVNIVTDSQYALGIIQAQPDRSESELVSQI----IEQLIKKE 529
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 530 KVYLSWVPAHKGIGGNEQVDKLVSN 554
>gi|344311806|gb|AEN04425.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 24/161 (14%)
Query: 73 IPPWSSV-VPSIDTSLHSGKKDNVSPS-VFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + + +K+ ++ + F V N +TK G T+
Sbjct: 411 IPEWEFVNTPPLVKLWYQLEKEPIAGAETFYVDGAANRDTKMGKA------GYVTDKGRQ 464
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKS 190
T+N+ N AEL AI L LQ+ + +VTDS +L I ++
Sbjct: 465 KIVTLNETTNQ----------KAELQAIQLALQD----SGLEVNIVTDSQYALGIIQAQP 510
Query: 191 CNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ S++ + ++ + + I W P+H GI GNE VD
Sbjct: 511 DKSE--SELVNQIIEQLINKERIYLSWVPAHKGIGGNEQVD 549
>gi|255984310|gb|ACU46227.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ K +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGLKVNIVTDSQYALGIIQAQPDKSESQLVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|37221434|gb|AAQ89846.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 119 FTDGS--KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + S Y ++ + EL AI L LQ+ ++ +V
Sbjct: 540 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQD----SGSEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
TDS +L I ++ + S++ S ++ + + + W P+H GI GNE VD N
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLINKERVYLAWVPAHKGIGGNEQVDKLVSN 653
>gi|13891902|gb|AAG50330.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 478 ELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 529
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 530 KVYLAWVPAHKGIGGNEQVDKLVSN 554
>gi|255984750|gb|ACU46447.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIXLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|432107368|gb|ELK32771.1| Ribonuclease H1 [Myotis davidii]
Length = 228
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 171 TKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYSTWLDLVACGKEISFMWCP 219
TK +L TDSM ++ ITS S A+ +K LD + G +I +M P
Sbjct: 145 TKLVLYTDSMFTIHGITSWVQGWKENGWRTSAGKAVTNKEDFMELDRLVQGVDIQWMHVP 204
Query: 220 SHCGISGNEAVDVAAKN 236
H G +GNE D A+
Sbjct: 205 GHSGFAGNEEADRLARE 221
>gi|344311802|gb|AEN04423.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + ++
Sbjct: 477 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSD--SEIVNQIIEQLIKKEK 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 531 VYLSWVPAHKGIGGNEQID 549
>gi|344311844|gb|AEN04444.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ + +VTDS +L I ++ + S+I + ++ + +
Sbjct: 477 AELQAIQLALQD----SEXEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLINKER 530
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 531 VYLSWVPAHKGIGGNEQVD 549
>gi|339507465|gb|AEJ81144.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL A+ L LQ+ ++ +VTDS +L I ++ + S+I + ++ + +
Sbjct: 573 AELQAVQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLIKKER 626
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 627 VYLSWVPAHKGIGGNEQVD 645
>gi|302594686|gb|ADL59531.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ +K +VTDS SL I ++ + S++ + ++ + ++
Sbjct: 38 ELHAIYLALQD----SGSKVNIVTDSQYSLGIIQAQPDRSE--SELVNQIIEELIKKDQV 91
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 92 YLSWVPAHKGIGGNEQVD 109
>gi|42592292|emb|CAF29007.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 568
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ N S+I S ++ + + +
Sbjct: 462 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQP--NKSESEIVSQIIEQLINKERV 515
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 516 YLAWVPAHKGIGGNEQVD 533
>gi|339507629|gb|AEJ81226.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 574 ELQAIXLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLINKEKV 627
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 628 YLAWVPAHKGIGGNEQVD 645
>gi|339507196|gb|AEJ81010.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 574 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 625
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 626 KVYLAWVPAHKGIGGNEQVD 645
>gi|226348514|gb|ACO50576.1| pol protein [Human immunodeficiency virus 1]
Length = 757
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 411 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 462
Query: 212 EISFMWCPSHCGISGNEAVD 231
+I W P+H GI GNE VD
Sbjct: 463 KIYLAWVPAHKGIGGNEQVD 482
>gi|37221526|gb|AAQ89891.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI+L LQ+ + +VTDS +L I ++ + S++ S ++ + + +
Sbjct: 577 ELQAIILALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLINKERV 630
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 631 YLAWVPAHKGIGGNEQVD 648
>gi|13891866|gb|AAG50312.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 478 ELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 529
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 530 KVYLAWVPAHKGIGGNEQVDKLVSN 554
>gi|288187813|gb|ADC42394.1| pol protein [Human immunodeficiency virus 1]
Length = 672
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ ++ Y +K + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRDTKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQD----SGLEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGVIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|19335964|emb|CAC38430.2| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1445
Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AELMA+LL LQ+ K + +V DS L I+S+ + S + ++ + ++
Sbjct: 1064 AELMAVLLALQDSKETVN----IVQDSQYVLGIISSQPTQSE--SSLVQQIIEELTKKEQ 1117
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 1118 VYLTWVPAHKGIGGNEKID 1136
>gi|306478245|gb|ADM89497.1| pol protein [Human immunodeficiency virus 1]
Length = 709
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ +
Sbjct: 338 AELQAIQLALQD----SGSEVNIVTDSQYALGVIQAQPDKSESELVNQI----IEQLIKK 389
Query: 211 KEISFMWCPSHCGISGNEAVD 231
++I W P+H GI GNE VD
Sbjct: 390 EKIYLSWVPAHKGIGGNEQVD 410
>gi|12657810|gb|AAK01033.1|AF301156_2 pol protein [Simian immunodeficiency virus]
Length = 990
Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACG-- 210
AEL +LL L K+ P + LVTDS+ +L IT + + ++ S+ +++ G
Sbjct: 612 AELTGVLLAL---KHGPK-RMNLVTDSLYALGIITGQPYD-----QLPSSRGEIIQAGMA 662
Query: 211 -KEISFMWCPSHCGISGNEAVD 231
+ I WCP+H GI GNE +D
Sbjct: 663 KEAIHVAWCPAHKGIGGNELID 684
>gi|339507296|gb|AEJ81060.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 574 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEZLIKKE 625
Query: 212 EISFMWCPSHCGISGNEAVD 231
+I W P+H GI GNE VD
Sbjct: 626 KIYLAWVPAHKGIGGNEQVD 645
>gi|327458383|gb|AEA76631.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + ++I
Sbjct: 478 ELQAIYLALQD----SGSEVNIVTDSQYALGIIHAQPDRSE--SEIVNQIIEQLIKKEKI 531
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 532 YLAWVPAHKGIGGNEQVD 549
>gi|228483801|gb|ACQ42713.1| pol protein [Human immunodeficiency virus 1]
Length = 711
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 24/166 (14%)
Query: 73 IPPWSSV--VPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + K+ + F V N TK + TDG + + S
Sbjct: 566 IPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKL-GKAGYVTDGGR-QKVVS 623
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKS 190
T N+ EL AI L LQ+ ++ +VTDS +L I ++
Sbjct: 624 LTDTTNQK--------------TELQAIYLALQD----SGSEVNIVTDSPYALGIIQAQP 665
Query: 191 CNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
+ S+I S ++ + + + W P+H GI GNE VD N
Sbjct: 666 DKSE--SEIVSQIIEQLINKERVYLAWVPAHKGIGGNEQVDKLVSN 709
>gi|344311862|gb|AEN04453.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ +
Sbjct: 477 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLIKK 528
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+ + W P+H GI GNE VD
Sbjct: 529 ERVYLSWVPAHKGIGGNEQVD 549
>gi|119176827|ref|XP_001240277.1| hypothetical protein CIMG_07440 [Coccidioides immitis RS]
Length = 188
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 116 ILCFTDGSKTENST---SCAYTINKNVN-SFRLNVVNSVFSAELMAILLCLQ------NL 165
++ ++DGSK E S + Y + N+ S+ L VF AEL AI +
Sbjct: 36 LILYSDGSKGEESQYAGAGVYNLQDNIRFSWNLGKYLEVFDAELFAIDKAFKLASSISQS 95
Query: 166 KYLPSTKFLLVTDSMSSLQAITSKSCNNAL--LSKIYSTWLDLVACGKEISFMWCPSHCG 223
+ + + +DS +++Q + + N+ L L I T + + W P+H
Sbjct: 96 QSRSISDIWVFSDSEAAIQRLMKQDLNSGLYYLQSIRKTAKSIKNQQINLHLHWIPAHVN 155
Query: 224 ISGNEAVDVAAKNPSPSFPPLKLCS 248
I NE D+A K + ++ S
Sbjct: 156 IHENEEADLAVKKATELNQIFQILS 180
>gi|255984510|gb|ACU46327.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
+I W P+H GI GNE VD
Sbjct: 130 KIYLAWVPAHKGIGGNEQVD 149
>gi|339507379|gb|AEJ81101.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 12/81 (14%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSL---QAITSKSCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ ++ +VTDS +L QA+ KS + L+S+I ++ +
Sbjct: 574 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQALPDKS-ESELVSQI----IEQLINK 624
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+++ W P+H GI GNE VD
Sbjct: 625 EKVYLAWVPAHKGIGGNEQVD 645
>gi|327458385|gb|AEA76632.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + ++I
Sbjct: 478 ELQAIYLALQD----SGSEVNIVTDSQYALGIIHAQPDRSE--SEIVNQIIEQLIKKEKI 531
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 532 YLAWVPAHKGIGGNEQVD 549
>gi|302393244|dbj|BAJ14327.1| pol protein [Simian immunodeficiency virus]
Length = 454
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGS--KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+TDGS K Y ++ + ++ + AEL A L+ L + K ++
Sbjct: 271 YTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALTD----SGPKANII 326
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
DS + IT C S++ + ++ + EI W P+H GI GN+ +D
Sbjct: 327 VDSQYVMGIITG--CPTESESRLVNQIIEEMIKKSEIYVAWVPAHKGIGGNQEID 379
>gi|255984930|gb|ACU46537.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
+I W P+H GI GNE VD
Sbjct: 130 KIYLAWVPAHKGIGGNEQVD 149
>gi|344311870|gb|AEN04457.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 20/112 (17%)
Query: 122 GSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMS 181
G T+ T+N+ N EL AI L LQ+ +K +VTDS
Sbjct: 456 GYVTDRGRQKIITLNETTNQ----------KTELQAIHLALQD----SGSKVNIVTDSQY 501
Query: 182 SLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+L J ++ + L+++I ++ + ++I W P+H GI GNE VD
Sbjct: 502 ALGIJQAQPDKSESELVNQI----IEQLIKKEKIYLSWVPAHKGIGGNEQVD 549
>gi|339507375|gb|AEJ81099.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ +
Sbjct: 573 TELQAIXLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLIXK 624
Query: 211 KEISFMWCPSHCGISGNEAVD 231
++I W P+H GI GNE VD
Sbjct: 625 EKIYLAWVPAHKGIGGNEQVD 645
>gi|255984856|gb|ACU46500.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
+I W P+H GI GNE VD
Sbjct: 130 KIYLAWVPAHKGIGGNEKVD 149
>gi|242794494|ref|XP_002482386.1| hypothetical protein TSTA_121370 [Talaromyces stipitatus ATCC
10500]
gi|218718974|gb|EED18394.1| hypothetical protein TSTA_121370 [Talaromyces stipitatus ATCC
10500]
Length = 1125
Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P + D+ +++ + T AL+ + +
Sbjct: 834 HEVFDAELVGVATALEWALERQPLGPIWVFLDAQNAIDRLRSTRPGPGQALVLRAHKAAE 893
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAA-----KNPSPSFPPLKL 246
L G+ ++ W P H GI GNE D AA K +P F L L
Sbjct: 894 KLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSL 940
>gi|339507391|gb|AEJ81107.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 574 ELQAIXLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIXKE 625
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 626 KVYLAWVPAHKGIGGNEQVD 645
>gi|343475641|emb|CCD13015.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1392
Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 171 TKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
T+ + TDS+S L A+ + +A+L +I+ L LV ++F + SHCG+ NE
Sbjct: 1114 TRVVAFTDSLSLLMALGTGPSVVEDAILRRIWDLILRLVRLRVSVNFQFVFSHCGVPRNE 1173
Query: 229 AVDVAAK--NPSPSFPP 243
A D A+ N P P
Sbjct: 1174 AADKEAEQGNAKPQMYP 1190
>gi|339507689|gb|AEJ81256.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ +
Sbjct: 573 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLINK 624
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
+ + W P+H GI GNE VD N
Sbjct: 625 ERVYLSWVPAHKGIGGNEQVDKLVSN 650
>gi|327458287|gb|AEA76583.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 152 SAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVAC 209
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ +
Sbjct: 476 QTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEXLIN 527
Query: 210 GKEISFMWCPSHCGISGNEAVD 231
+++ W P+H GI GNE VD
Sbjct: 528 KEKVYLAWVPAHKGIGGNEQVD 549
>gi|212541462|ref|XP_002150886.1| hypothetical protein PMAA_060570 [Talaromyces marneffei ATCC 18224]
gi|210068185|gb|EEA22277.1| hypothetical protein PMAA_060570 [Talaromyces marneffei ATCC 18224]
Length = 423
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 149 SVFSAELMAILLCLQNL--KYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
VF AEL+ + L+ ++LP +L+ D+ ++++ + T +L + + T
Sbjct: 162 EVFDAELVGVASALEWALERHLPGPIHVLL-DAQNAIKRLQSTEPGAGQSLALRPHMTAS 220
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFP 242
L G+ ++ W P H + GNE D AAK P+ S P
Sbjct: 221 RLRLSGRPVTIQWVPGHNRVEGNEQADQAAK-PTASKP 257
>gi|344311894|gb|AEN04469.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 478 ELQAIWLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEELIKKE 529
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
+ W P+H GI GNE VD N
Sbjct: 530 RVYLSWVPAHKGIGGNEQVDKLVSN 554
>gi|344311657|gb|AEN04351.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y ++ + EL AIL+ LQ+ ++ +V
Sbjct: 441 YVDGAAXRETKMGKAGYVTDRGRQKIVSQSETTNQKTELQAILIALQD----SGSEVNIV 496
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+++I ++ + + + W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSESELVNQI----IEQLIKKERVYLSWVPAHKGIGGNEQVD 549
>gi|327458277|gb|AEA76578.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + +++
Sbjct: 478 ELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLIXKEKV 531
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 532 YLSWVPAHKGIGGNEQVDKLVSN 554
>gi|339507473|gb|AEJ81148.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ +
Sbjct: 573 TELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEELIKK 624
Query: 211 KEISFMWCPSHCGISGNEAVD 231
++I W P+H GI GNE VD
Sbjct: 625 EKIYLAWVPAHKGIGGNEQVD 645
>gi|242825408|ref|XP_002488434.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712252|gb|EED11678.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 906
Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 148 NSVFSAELMAILLCLQ-NLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWL 204
+ VF AEL+ + L+ L+ P ++ D+ +++ + S AL+ + +
Sbjct: 615 HEVFDAELVGVATALEWALERQPLGPIWILLDAQNAIDRLKSARPGPGQALVLRAHRAVE 674
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAA-----KNPSPSFPPLKL 246
L G+ ++ W P H G+ GNE D AA K +P F L L
Sbjct: 675 KLAMRGQPVTIQWVPGHSGVVGNEQADQAAKRAASKQTAPGFEHLSL 721
>gi|167833025|gb|ACA02121.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
EL AI L LQ+ ++ +VTDS +L I ++ + S++ + ++L+ +
Sbjct: 576 TELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVNQIIELLINKER 629
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 630 VYLSWVPAHKGIGGNEQVD 648
>gi|386642406|emb|CCD41788.1| pol protein, partial [Simian immunodeficiency virus]
Length = 658
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 119 FTDGSKTENSTS--CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ NS Y N+ + + AEL A+LL L++ K +V
Sbjct: 351 YVDGAANRNSKQGKAGYVTNRGKEKVKELEETTNQKAELEAVLLALKD----SGPKVNIV 406
Query: 177 TDSMSSLQAITSKS--CNNALLSKIYSTWLDLVACGKEISFM-WCPSHCGISGNEAVD 231
TDS + ++ ++ ++++I + + GKE ++ W P+H GI GNE VD
Sbjct: 407 TDSQYVYGILEAQPEFSDSPIVTEIINQLI-----GKEAVYLSWVPAHKGIGGNEEVD 459
>gi|327458369|gb|AEA76624.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 478 ELQAIQLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 529
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 530 KVYLAWVPAHKGIGGNEQVDKLVSN 554
>gi|327458367|gb|AEA76623.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 478 ELQAIQLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 529
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 530 KVYLAWVPAHKGIGGNEQVDKLVSN 554
>gi|302594714|gb|ADL59545.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I + + S+I + ++L+ +++
Sbjct: 38 ELQAIHLALQD----SGSAVNIVTDSQYALGIIQAHPDKSE--SEIVNQIIELLIQKEKV 91
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 92 YLSWVPAHKGIGGNEQVD 109
>gi|13891906|gb|AAG50332.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 560
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 478 ELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 529
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 530 KVYLAWVPAHKGIGGNEQVDKLVSN 554
>gi|344311816|gb|AEN04430.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 28/168 (16%)
Query: 73 IPPWSSV-VPSIDTSLHSGKKDNVSPS-VFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + + +KD ++ + F V N TK G T+
Sbjct: 411 IPEWEFVNTPPLVKLWYQLEKDPIAGAETFYVDGAANRETK------MGKAGYVTDRGRQ 464
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK- 189
TI++ N EL AI L LQ+ ++ +VTDS +L I ++
Sbjct: 465 KVVTISETTNQ----------KTELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQP 510
Query: 190 -SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
+ L+++I ++ + + + W P+H GI GNE VD N
Sbjct: 511 DKSESELVNQI----IEQLIKKERVYLSWVPAHKGIGGNEQVDKLVSN 554
>gi|339507246|gb|AEJ81035.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ +
Sbjct: 573 TELQAIRLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLINK 624
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 625 DKVYLAWVPAHKGIGGNEQVDKLVSN 650
>gi|255984842|gb|ACU46493.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIXKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|339507298|gb|AEJ81061.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 574 ELQAIXLALQD----SGAEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 625
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 626 KVYLAWVPAHKGIGGNEKVD 645
>gi|326416856|gb|ADZ73281.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I + ++ + + I
Sbjct: 577 ELHAILLALQD----SGPEVNIVTDSQYALGIIQAQPDKSE--SEIVNNIIEQLIKKERI 630
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 631 YLSWVPAHKGIGGNEQVD 648
>gi|321453396|gb|EFX64636.1| hypothetical protein DAPPUDRAFT_333996 [Daphnia pulex]
Length = 292
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 116 ILCFTDGSKT--ENSTSCAYTI---NKNVNSFRLNVVNSVFSAELMAILLCLQ---NLKY 167
I +TD SK+ + +T+CA I NK +++ L +S+F+A++ AI L+ ++
Sbjct: 137 IRAYTDRSKSSSQETTTCAIFIPVLNKE-HAWTLTKGSSIFTAKVTAIYQALKLFYDMDD 195
Query: 168 LPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGN 227
P + S + + ++ N ++ L + G W PSH GI GN
Sbjct: 196 CPPEAIIYSDSSSAIIAISSNSLSENEAITATREIIASLKSSGTRTRLTWIPSHTGIEGN 255
Query: 228 EAVDVAA 234
E D A
Sbjct: 256 ERTDRLA 262
>gi|226348618|gb|ACO50628.1| pol protein [Human immunodeficiency virus 1]
Length = 445
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ ++ +V
Sbjct: 84 YVDGAANRETKLGKAGYVTNKGRQKVVSLTDTTNQKTELQAIYLALQD----SGSEVNIV 139
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 140 TDSQYALGIIQAQPDKSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 192
>gi|327458245|gb|AEA76562.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 63/163 (38%), Gaps = 28/163 (17%)
Query: 73 IPPWSSV--VPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + K+ V F V N TK G T+
Sbjct: 411 IPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETK------LGKAGYVTDRGRQ 464
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK- 189
A +I N EL AI L LQ+ + +VTDS +L I ++
Sbjct: 465 KAVSITDTTNQ----------KTELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQP 510
Query: 190 -SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 511 DKSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|294934891|ref|XP_002781258.1| hypothetical protein Pmar_PMAR013589 [Perkinsus marinus ATCC 50983]
gi|239891662|gb|EER13053.1| hypothetical protein Pmar_PMAR013589 [Perkinsus marinus ATCC 50983]
Length = 181
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 21/150 (14%)
Query: 119 FTDGSKT--------ENSTSCAY-TINKNVNSFR----LNVVNSVFSAELMAILLCLQNL 165
+TDGSK ST CA+ +N R L+ NSV+ AE++AI L+
Sbjct: 26 YTDGSKVPRDMRRGIAESTGCAFVAVNPRGGEVRRLFCLDPANSVYQAEVVAIREALRYA 85
Query: 166 --KYLPST-----KFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWC 218
+ +P + + +DS ++L++I S L +I + G + F W
Sbjct: 86 LEELIPGEGSHHRRIEIFSDSEAALKSINSTR-RTKLTEEIELLYRKCDELGASVRFNWI 144
Query: 219 PSHCGISGNEAVDVAAKNPSPSFPPLKLCS 248
SH + NE D A P + P L +
Sbjct: 145 CSHSNVYYNEVADRLAXXGLPLYDPEALVA 174
>gi|306478231|gb|ADM89490.1| pol protein [Human immunodeficiency virus 1]
Length = 757
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 12/120 (10%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AILL LQ+ + +V
Sbjct: 350 YVDGAANRETKVGKAGYVTNKGKQKVVSLTDTTNQKTELQAILLALQD----SGLEVNIV 405
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAA 234
TDS +L I ++ + L+++I ++ + + + W P+H GI GNE VD A
Sbjct: 406 TDSQYALGIIQAQPDKSESELVNQI----IEQLINKERVYLSWVPAHKGIGGNEQVDKLA 461
>gi|255984426|gb|ACU46285.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y NK + EL AI L LQ+ T+ +V
Sbjct: 41 YVDGAANRETKLGKAGYVTNKGRQKVXTLTDTTNQKTELQAIHLALQD----SGTEVNIV 96
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +J I ++ + L+++I ++ + + W P+H GI GNE VD
Sbjct: 97 TDSQYAJGIIQAQPDKSESELVNQI----IEQLIXKXRVYLAWVPAHKGIGGNEQVD 149
>gi|255984912|gb|ACU46528.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 78 ELQAINLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLXKKEKV 131
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 132 YLAWVPAHKGIGGNEQVD 149
>gi|339507358|gb|AEJ81091.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 63/166 (37%), Gaps = 24/166 (14%)
Query: 73 IPPWSSV--VPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + K+ V F V N TK G T+
Sbjct: 507 IPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETK------LGKAGYITDKGRQ 560
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKS 190
++N N EL AI L LQ+ + +VTDS +L I ++
Sbjct: 561 KVVSLNDTTNQ----------KTELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQP 606
Query: 191 CNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
+ S++ S ++ + +++ W P+H GI GNE VD N
Sbjct: 607 DKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNERVDKLVSN 650
>gi|339507342|gb|AEJ81083.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 574 ELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDXSESELVSQI----IEQLIKKE 625
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 626 KVYLAWVPAHKGIGGNEQVDKLVSN 650
>gi|339507268|gb|AEJ81046.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 24/161 (14%)
Query: 73 IPPWSSV--VPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + K+ V F V N TK G T+
Sbjct: 507 IPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETK------LGKAGYVTDRGRQ 560
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKS 190
+IN N EL AI L LQ+ + +VTDS +L I ++
Sbjct: 561 KVVSINDTTNQ----------KTELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQP 606
Query: 191 CNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ S+I + ++ + +++ W P+H GI GNE VD
Sbjct: 607 DKSE--SEIVNQIIEQLIKKEKVYLAWVPAHKGIGGNEKVD 645
>gi|156052491|ref|XP_001592172.1| hypothetical protein SS1G_06411 [Sclerotinia sclerotiorum 1980]
gi|154704191|gb|EDO03930.1| hypothetical protein SS1G_06411 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1114
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 76/214 (35%), Gaps = 36/214 (16%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK++ + N+ KY + I +TD S T
Sbjct: 762 YFPPWKKEVPYRVNISKLGKEE--------AAMIHNLAFKYRCKNTITIYTDASSTLEGI 813
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
S TIN VN V++ EL+ + ++ N P K
Sbjct: 814 GVGIGIVVILPNGRNSYQETINIGVNQL-------VYNGELLGVTKAIEYANSIAQPGNK 866
Query: 173 FLLVTDSMSSLQAIT--SKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAV 230
F + +D+ + L + S S + K + G EIS W P H + GNE
Sbjct: 867 FKIYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNKGAEISLNWVPGHTSVQGNELA 926
Query: 231 DVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
D AK + S + IK++ NW
Sbjct: 927 DSLAKEATKIPSSSHETSYASIGMDIKRMKSENW 960
>gi|126360750|gb|ABO09896.1| pol protein [Simian immunodeficiency virus]
Length = 661
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACG 210
AEL AIL+ L + K +VTDS +L IT+ ++ + L+ KI L A
Sbjct: 397 AELQAILMALTD----GPPKMNIVTDSQYALGIITTAPETSESPLVEKIIQQLLTKEA-- 450
Query: 211 KEISFMWCPSHCGISGNEAVD 231
I W P+H GI GN+ VD
Sbjct: 451 --IYLSWVPAHKGIGGNQEVD 469
>gi|326416826|gb|ADZ73266.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I + ++ + + I
Sbjct: 577 ELHAILLALQD----SGPEVNIVTDSQYALGIIQAQPDKSE--SEIVNNIIEQLIKKERI 630
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 631 YLSWVPAHKGIGGNEQVD 648
>gi|322702767|gb|EFY94393.1| reverse transcriptase, RNaseH [Metarhizium anisopliae ARSEF 23]
Length = 553
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 82/202 (40%), Gaps = 30/202 (14%)
Query: 44 PKPLLMRAREITDFIANIDSSEFA-PYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQV 102
P PLL+ AR I F A + S + A P + P I T+L D P+V +
Sbjct: 277 PVPLLLEARRIR-FAARLKSLDLAHPLAQRTAP-----TPIRTALF--LSDCPRPTVEGI 328
Query: 103 QFLVNINTKYHDRILCFTDGSKT-ENSTSCAYTINKN-----VNSFRLNVVNSVFSAELM 156
D ++ ++DGS+ +T Y +++N S RL VF AE
Sbjct: 329 S---------PDELVVYSDGSQLPGGATGYGYAVHQNSVTICEGSGRLGPAE-VFDAEAA 378
Query: 157 AILLCLQNLKYLPSTK---FLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
L L+ +P ++ D++++ + + +++ + + ++ A I
Sbjct: 379 GALEGLRAAVKIPDASDNPIVVCLDNLAAATCLRGTALDSS--QSAFLKFQEIAAAHGSI 436
Query: 214 SFMWCPSHCGISGNEAVDVAAK 235
W P H I GNE D AK
Sbjct: 437 HVRWIPGHTDIPGNEQADSLAK 458
>gi|156717518|ref|NP_001096299.1| ribonuclease H1 [Xenopus (Silurana) tropicalis]
gi|134023904|gb|AAI35623.1| LOC100124876 protein [Xenopus (Silurana) tropicalis]
Length = 299
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 19/137 (13%)
Query: 114 DRILCFTDGSKTENSTSCA-------YTINKNVN-SFRLNVVNSVFSAELMAILLCLQNL 165
D ++ +TDG ++N A + +N +N + +L + AE+ A L+
Sbjct: 149 DSVVVYTDGCCSQNGRLKARAGIGVYWGLNHPLNLAEKLEGRQTNQRAEIQAACRALELA 208
Query: 166 KYLPSTKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYSTWLDLVACGKEIS 214
K +K +L TDSM ++ IT + ++++ LD + G +I
Sbjct: 209 KSQNISKLVLYTDSMFTINGITKWIHSWKRNGWKLTTGKKVINREDFEKLDKLTQGLDIK 268
Query: 215 FMWCPSHCGISGNEAVD 231
+M P H G GNEA D
Sbjct: 269 WMHIPGHAGFEGNEAAD 285
>gi|255984758|gb|ACU46451.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|344311659|gb|AEN04352.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 560
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y ++ + EL AIL+ LQ+ ++ +V
Sbjct: 441 YVDGAANRETKMGKAGYVTDRGRQKIVSQSETTNQKTELQAILIALQD----SGSEVNIV 496
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+++I ++ + + + W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSESELVNQI----IEQLIKKERVYLSWVPAHKGIGGNEQVD 549
>gi|255984680|gb|ACU46412.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|255984468|gb|ACU46306.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|344311719|gb|AEN04382.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ T+ +VTDS +L I ++ + L+++I ++ + +
Sbjct: 478 ELQAIQLALQD----SGTEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLIKKE 529
Query: 212 EISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 530 RVYLSWVPAHKGIGGNEQVD 549
>gi|255984756|gb|ACU46450.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIQKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|427798873|gb|JAA64888.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1158
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
Query: 94 NVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSF--RLNVVNSVF 151
NV +FQ L I T ++ TD S+ E ++ SF RL +F
Sbjct: 910 NVLNGIFQ-DHLNQIGTT----VVIATDASQCEEKAGVGIFSSQLDWSFSVRLPDYTQIF 964
Query: 152 SAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACG- 210
AE +A++L L+ L + T +VTDS+S A+ + + ++ L L L+
Sbjct: 965 LAEFLAVILALRKLPF-SITSVAIVTDSLSLCSALITPTESHIL------RLLRLLVPHH 1017
Query: 211 -KEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDY 252
+ + +W P H GI NE D AK S + P L L + +
Sbjct: 1018 LRNLRLIWVPGHRGIVLNEVADTLAK-ASLAGPVLALLPVTAF 1059
>gi|344311804|gb|AEN04424.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 122 GSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMS 181
G T+ T+N+ N AEL AI L LQ+ + +VTDS
Sbjct: 456 GYVTDKGRQKIVTLNETTNQ----------KAELQAIQLALQD----SGLEVNIVTDSQY 501
Query: 182 SLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+L I ++ + S++ + ++ + + I W P+H GI GNE VD
Sbjct: 502 ALGIIQAQPDKSE--SELVNQIIEQLINKERIYLSWVPAHKGIGGNEQVD 549
>gi|306416280|gb|ADM86987.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ + ++ + K++
Sbjct: 478 ELHAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEVVNQIIEELIKKKKV 531
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 532 YLSWVPAHKGIGGNEQVD 549
>gi|255984496|gb|ACU46320.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AILL LQ+ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAILLALQD----SGLDVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE +D
Sbjct: 130 KVYLAWVPAHKGIGGNEQID 149
>gi|226348576|gb|ACO50607.1| pol protein [Human immunodeficiency virus 1]
Length = 682
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S++ S ++ + ++I
Sbjct: 411 ELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKI 464
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 465 YLAWVPAHKGIGGNEQVD 482
>gi|256010803|gb|ACU55258.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + + Y NK + EL AILL LQ+ K +V
Sbjct: 601 YVDGAASRETKLGKAGYVTNKGRQKVVTLADTTNQKTELQAILLALQD----SGAKVNIV 656
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 657 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 709
>gi|339507555|gb|AEJ81189.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
EL AI L LQ+ ++ +VTDS +L I ++ + S++ S ++ + ++
Sbjct: 573 TELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEK 626
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 627 VYLSWVPAHKGIGGNEQVD 645
>gi|341571887|gb|AEK79578.1| pol protein [Simian immunodeficiency virus]
Length = 297
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 152 SAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVAC 209
AEL AILL LQ+ +K +VTDS L + + L+ +I +
Sbjct: 30 QAELQAILLALQD----SGSKVNIVTDSQYVLGVLQGSPDQSESPLVEEIIENLIQ---- 81
Query: 210 GKEISFMWCPSHCGISGNEAVD 231
EI W P+H GI GNE VD
Sbjct: 82 KDEIYLNWVPAHKGIGGNEEVD 103
>gi|339507535|gb|AEJ81179.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 574 ELQAIXLALQD----SESEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEELIKKE 625
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 626 KVYLAWVPAHKGIGGNEQVD 645
>gi|226348582|gb|ACO50610.1| pol protein [Human immunodeficiency virus 1]
Length = 736
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I +K + L+++I ++ + +
Sbjct: 411 ELQAIQLALQD----SGSEVNIVTDSQYALGIIQAKPDKSESELVNQI----IEQLIKKE 462
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 463 KVYLAWVPAHKGIGGNEQVD 482
>gi|344311874|gb|AEN04459.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ N+ S++ + ++ + + +
Sbjct: 478 ELQAIKLALQD----SGAEVNIVTDSQYALGIIQAQPDNSE--SELVNQIIEQLIKKERV 531
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 532 YLSWVPAHKGIGGNEQVD 549
>gi|255984606|gb|ACU46375.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|319444194|gb|ADV58205.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ ++ +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLTWVPAHKGIGGNEQVD 707
>gi|288558531|dbj|BAI68322.1| polyprotein [Human immunodeficiency virus 1]
Length = 326
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ S + ++S+I ++ + +
Sbjct: 229 ELHAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDSSESEVVSQI----IEELIKKE 280
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 281 KVYLSWVPAHKGIGGNEQVD 300
>gi|344311661|gb|AEN04353.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y ++ + EL AIL+ LQ+ ++ +V
Sbjct: 441 YVDGAANRETKMGKAGYVTDRGRQKIVSQSETTNQKTELQAILIALQD----SGSEVNIV 496
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+++I ++ + + + W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSESELVNQI----IEQLIKKERVYLSWVPAHKGIGGNEQVD 549
>gi|367465214|gb|AEX15401.1| pol protein [Human immunodeficiency virus 1]
Length = 401
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + SK+ S ++ + +++
Sbjct: 31 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SKVVSQIIEELIKKEKV 84
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 85 YLAWVPAHKGIGGNEHVD 102
>gi|255984276|gb|ACU46210.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 78 ELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 131
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 132 YLAWVPAHKGIGGNEQVD 149
>gi|255984768|gb|ACU46456.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 78 ELQAIXLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 131
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 132 YLAWVPAHKGIGGNEQVD 149
>gi|288187549|gb|ADC42269.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 122 GSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMS 181
G T+ T+N N EL AI L LQ+ + +VTDS
Sbjct: 555 GYVTDKGRQKVVTLNDTTNQ----------KTELQAIYLALQD----SGVEVNIVTDSQY 600
Query: 182 SLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+L I ++ + S++ S ++ + + + W P+H GI GNE VD
Sbjct: 601 ALGIIQAQPDKSE--SELVSQIIEQLINKERVYLAWVPAHKGIGGNEQVD 648
>gi|255984256|gb|ACU46200.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|427781821|gb|JAA56362.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 1134
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 17/163 (10%)
Query: 94 NVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSF--RLNVVNSVF 151
NV +FQ L I T ++ TD S+ E ++ SF RL +F
Sbjct: 830 NVLNGIFQ-DHLNQIGTT----VVIATDASQCEEKAGVGIFSSQLDWSFSVRLPDYTQIF 884
Query: 152 SAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACG- 210
AE +A++L L+ L + T +VTDS+S A+ + + ++ L L L+
Sbjct: 885 LAEFLAVILALRKLPF-SITSVAIVTDSLSLCSALITPTESHIL------RLLRLLVPHH 937
Query: 211 -KEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDY 252
+ + +W P H GI NE D AK S + P L L + +
Sbjct: 938 LRNLRLIWVPGHRGIVLNEVADTLAK-ASLAGPVLALLPVTAF 979
>gi|344311872|gb|AEN04458.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ N+ S++ + ++ + + +
Sbjct: 478 ELQAIKLALQD----SGAEVNIVTDSQYALGIIQAQPDNSE--SELVNQIIEQLIKKERV 531
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 532 YLSWVPAHKGIGGNEQVD 549
>gi|344311697|gb|AEN04371.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ +
Sbjct: 477 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLINK 528
Query: 211 KEISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 529 DRIYLSWVPAHKGIGGNEQVD 549
>gi|11385953|gb|AAG35040.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ +K +VTDS +L I ++ + S++ + ++ + +
Sbjct: 576 AELHAIQLALQD----SGSKVNIVTDSQYALGIIQAQPDKSE--SELVNQIIEQLIKKEN 629
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 630 VYLSWVPAHKGIGGNEQVD 648
>gi|226348560|gb|ACO50599.1| pol protein [Human immunodeficiency virus 1]
Length = 370
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S++ + ++ + +
Sbjct: 57 AELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVNQIIEQLIQKER 110
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 111 IYLTWVPAHKGIGGNEQVD 129
>gi|339507370|gb|AEJ81097.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 22/113 (19%)
Query: 122 GSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMS 181
G T TIN N EL AI L LQ+ ++ +VTDS
Sbjct: 552 GYVTNRGRQKVVTINDTTNQ----------KTELQAIHLALQD----SGSEVNIVTDSQY 597
Query: 182 SL---QAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+L QAI KS + L+++I ++ + ++ W P+H GI GNE VD
Sbjct: 598 ALGIIQAIPDKS-ESELVNQI----IEQLIKKDKVYLAWVPAHKGIGGNEQVD 645
>gi|319429306|gb|ADV56926.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + + +
Sbjct: 577 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLIQKERV 630
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 631 YLSWVPAHKGIGGNEQVDKLVSN 653
>gi|55139291|gb|AAV41311.1| truncated pol protein [Human immunodeficiency virus 1]
Length = 842
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ N+ S++ + ++ + + +
Sbjct: 641 ELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDNSE--SELVNQIIEELIKKERV 694
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 695 YLSWVPAHKGIGGNEQVD 712
>gi|17025732|gb|AAK96029.1| pol protein [Human immunodeficiency virus 1]
Length = 559
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ K +VTDS +L I ++ + L+++I ++ + +
Sbjct: 468 ELQAIHLALQD----SGLKVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLIKKE 519
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 520 KVYLAWVPAHKGIGGNEQVDKLVSN 544
>gi|373881390|gb|AEY78030.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ S ++ + + +
Sbjct: 577 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIRKERV 630
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 631 YLSWVPAHKGIGGNEQVD 648
>gi|307189101|gb|EFN73572.1| hypothetical protein EAG_08495 [Camponotus floridanus]
Length = 246
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 142 FRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNN-------A 194
++L+ S+FSAE +AI+ + + + + TDS S ++ +++ + A
Sbjct: 22 YKLDRYFSIFSAECIAIMCAMDYILEEGIKRSAIFTDSRSMVETLSNGLLDRDLSYLILA 81
Query: 195 LLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
L +K+ S ++ ++ +W PSH GI GNE D+ A +
Sbjct: 82 LKNKLRSAYVQ----NLDVVIVWVPSHVGILGNETADLLAGEAA 121
>gi|49574383|gb|AAT66861.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + +++
Sbjct: 478 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLIKKEKV 531
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 532 YLAWVPAHKGIGGNEQVD 549
>gi|327458253|gb|AEA76566.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 478 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 529
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 530 KVYLAWVPAHKGIGGNEQVDKLVSN 554
>gi|339507521|gb|AEJ81172.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 63/163 (38%), Gaps = 28/163 (17%)
Query: 73 IPPWSSV--VPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + K+ V F V N TK G T+
Sbjct: 507 IPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETK------LGKAGYVTDRGRQ 560
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK- 189
+IN N EL AI L LQ+ + +VTDS +L I ++
Sbjct: 561 KVVSINDTTNQ----------KTELQAINLALQD----SGLEVNIVTDSQYALGIIQAQP 606
Query: 190 -SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ L+S+I ++ + +++ W P+H GI GNE VD
Sbjct: 607 DKSESELVSQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 645
>gi|327458255|gb|AEA76567.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 478 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 529
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 530 KVYLAWVPAHKGIGGNEQVDKLVSN 554
>gi|306478255|gb|ADM89502.1| pol protein [Human immunodeficiency virus 1]
Length = 809
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+ S ++ + +++
Sbjct: 439 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDQSE--SETVSQIIEQLIKKEKV 492
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 493 YLAWVPAHKGIGGNEQVD 510
>gi|339507284|gb|AEJ81054.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 574 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEELIKKE 625
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 626 KVYLAWVPAHKGIGGNEQVD 645
>gi|306478257|gb|ADM89503.1| pol protein [Human immunodeficiency virus 1]
Length = 639
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 152 SAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + S+I S ++ + +
Sbjct: 267 QTELQAIYLALQD----SGPEVNIVTDSQYALGIIQAQPDRSE--SEIVSQIIEQLIKKE 320
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 321 KVYLTWIPAHKGIGGNEQVD 340
>gi|255984018|gb|ACU46081.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y +K + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQRTELQAIYLALQD----SGLEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|49574387|gb|AAT66863.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ + +
Sbjct: 478 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLITKE 529
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 530 KVYLAWVPAHKGIGGNEQVD 549
>gi|255984046|gb|ACU46095.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 577 ELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEXLINKEKV 630
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 631 YLAWVPAHKGIGGNEQVD 648
>gi|327458279|gb|AEA76579.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + + +
Sbjct: 478 ELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLIXKEXV 531
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 532 YLSWVPAHKGIGGNEQVDKLVSN 554
>gi|304347439|gb|ADM25282.1| pol protein [Human immunodeficiency virus 1]
Length = 542
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 460 ELXAIXLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEELIKKE 511
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 512 KVYLAWVPAHKGIGGNEQVDKLVSN 536
>gi|156061383|ref|XP_001596614.1| hypothetical protein SS1G_02835 [Sclerotinia sclerotiorum 1980]
gi|154700238|gb|EDN99976.1| hypothetical protein SS1G_02835 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 735
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 80/217 (36%), Gaps = 30/217 (13%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKTENST 129
+ PPW VP GK+ + + N+ KY + I +TD S T
Sbjct: 383 YFPPWKKEVPYKVNISKLGKE--------EAAMIHNLAFKYRCKNTIAIYTDASSTLEGI 434
Query: 130 SCAYTI-----NKNV---NSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTKFLLVTDS 179
I N + + + V V++ EL+ + ++ N P KF + +D+
Sbjct: 435 RIGIGIAVILPNGRISHQETINIGVNQLVYNDELLGVTKAIEYTNSIAQPGNKFKIYSDN 494
Query: 180 MSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN- 236
+ L + + S + K + G EIS W P H + GNE D AK
Sbjct: 495 QAGLFRLKTPSDLPGQSCQIKAIKVAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEA 554
Query: 237 ---PSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
PS S D IK++ NW + N+
Sbjct: 555 TKIPSSSHETSYAFIGMD----IKRMKSENWIAILNT 587
>gi|307186892|gb|EFN72292.1| hypothetical protein EAG_00351 [Camponotus floridanus]
Length = 182
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 80 VPSID--TSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCF-TDGSKTENSTSCAYTIN 136
+P ID T L+ K N + +F+ F +NT Y CF TDGSKT N+ ++I
Sbjct: 100 IPEIDLTTGLNFDKNSNNNEKLFREIFQDTLNTSY-----CFFTDGSKTTNAEFTGFSIY 154
Query: 137 KNVNSFRLNV----VNSVFSAELMAIL 159
+F+L +S+FS E MAIL
Sbjct: 155 SLDQTFKLEFRSTGYSSIFSLEAMAIL 181
>gi|156379280|ref|XP_001631386.1| predicted protein [Nematostella vectensis]
gi|156218425|gb|EDO39323.1| predicted protein [Nematostella vectensis]
Length = 272
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 21/149 (14%)
Query: 114 DRILCFTDGSKTENSTSCA-------YTINKNVN-SFRLNVVNSVFSAELMAILLCLQNL 165
DR + +TDG T N S A + N N S RL + AE++A + L++
Sbjct: 124 DRPVVYTDGCCTRNGFSGAKAGVGVYWGPNHKRNISERLPGRQTNQRAEIVAATMALESA 183
Query: 166 KYLPSTKFLLVTDSMSSLQAITS----------KSCNNALLSKIYSTWLDLVACGKEISF 215
K + TK + TDS ++ +TS K+ +N + + + L EI
Sbjct: 184 KEMGFTKVEIRTDSKYTINGMTSWIRSWKKNGWKTADNKDVKNL-EDFQKLDKLCSEIDV 242
Query: 216 MWC--PSHCGISGNEAVDVAAKNPSPSFP 242
W H GI GNE D AK + P
Sbjct: 243 HWTHVAGHAGIEGNEIADQLAKGGADKSP 271
>gi|339507667|gb|AEJ81245.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ +
Sbjct: 573 TELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKK 624
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
+++ W P+H GI GNE VD N
Sbjct: 625 EKVYLAWVPAHKGIGGNEXVDKLVSN 650
>gi|288187567|gb|ADC42277.1| pol protein [Human immunodeficiency virus 1]
Length = 669
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 62/161 (38%), Gaps = 24/161 (14%)
Query: 73 IPPW--SSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W ++ P + H K+ F V N TK G T
Sbjct: 510 IPEWEFTNTPPLVKLWYHLEKEPIEGAETFYVDGAANRETKLGKA------GYVTNKGRQ 563
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKS 190
T+N N EL AI L LQ+ + +VTDS +L I ++
Sbjct: 564 KVVTLNDTTNQ----------KTELQAIHLALQD----SGAEVNIVTDSQYALGIIQAQP 609
Query: 191 CNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+ S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 610 DKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 648
>gi|229661922|gb|ACQ84376.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 41.2 bits (95), Expect = 0.51, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I S ++ + ++
Sbjct: 632 AELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIIKEK 685
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 686 VYLAWVPAHKGIGGNEQVD 704
>gi|159031771|dbj|BAF91857.1| polyprotein [Human immunodeficiency virus 1]
Length = 539
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 449 ELQAINLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIXKE 500
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 501 KVYLSWVPAHKGIGGNEQVDKLVSN 525
>gi|159031787|dbj|BAF91865.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 447 ELQAINLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIXKE 498
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 499 KVYLSWVPAHKGIGGNEQVDKLVSN 523
>gi|344311840|gb|AEN04442.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ + +VTDS +L I ++ + L+++I ++ +
Sbjct: 477 AELQAIQLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLINK 528
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+ I W P+H GI GNE VD
Sbjct: 529 ERIYLSWVPAHKGIGGNEQVD 549
>gi|343476744|emb|CCD12245.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 909
Score = 41.2 bits (95), Expect = 0.53, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 171 TKFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
T+ + TDS+ L A+++ +A+L +I+ LV ++F + SHCG+ NE
Sbjct: 622 TRVVAFTDSLLLLMALSTGPAVVEDAILRRIWDLIFRLVRLRVSVNFQFVFSHCGVPRNE 681
Query: 229 AVDVAAK--NPSPSFPP 243
A D +AK N P P
Sbjct: 682 AADKSAKQGNAKPQMYP 698
>gi|256011464|gb|ACU55588.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 41.2 bits (95), Expect = 0.53, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ ++ +VTDS +L I ++ + S+I S ++ + + +
Sbjct: 637 ELQAILLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVSXIIEQLINKEXV 690
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 691 YLTWVPAHKGIGGNEKVD 708
>gi|226348534|gb|ACO50586.1| pol protein [Human immunodeficiency virus 1]
Length = 464
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 119 FTDGS--KTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + S Y NK + EL AI L LQ+ + +V
Sbjct: 81 YVDGAANRETKSGKAGYVTNKGRQKIISLTDTTNQKTELQAIYLALQD----SGLEVNIV 136
Query: 177 TDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + L+++I ++ + +++ W P+H GI GNE VD
Sbjct: 137 TDSQYALGIIQAQPDRSESELVNQI----IEQLIKKEKVYLAWVPAHKGIGGNEQVD 189
>gi|344311778|gb|AEN04411.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
+EL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ +
Sbjct: 477 SELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESDLVNQI----IEQLIXK 528
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
+ I W P+H GI GNE VD N
Sbjct: 529 ERIYLSWVPAHKGIGGNEQVDKLVSN 554
>gi|255984940|gb|ACU46542.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIXLALQD----SELEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|339507679|gb|AEJ81251.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ +
Sbjct: 573 TELQAINLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKK 624
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
+++ W P+H GI GNE VD N
Sbjct: 625 EKVYLAWVPAHKGIGGNEQVDKLVSN 650
>gi|156045854|ref|XP_001589482.1| hypothetical protein SS1G_09203 [Sclerotinia sclerotiorum 1980]
gi|154693599|gb|EDN93337.1| hypothetical protein SS1G_09203 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 778
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 77/218 (35%), Gaps = 44/218 (20%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK++ + N+ KY + I +TD S T
Sbjct: 184 YFPPWKKEVPYKVNISKLGKEE--------AAMIHNLAFKYRCKNTITIYTDASSTLEGI 235
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
S TIN VN V++ EL+ + ++ N P K
Sbjct: 236 GIGIGIAVILPNGRISHQETINIGVNQL-------VYNGELLGVTKAIEYANSIAQPGNK 288
Query: 173 FLLVTDSMSSL------QAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226
F + +D+ + L + +SC + + + G EIS W P H + G
Sbjct: 289 FKIYSDNQAGLFRLKTPSDLPGQSCQIKAIKAAEA----IQNKGAEISLNWVPGHTSVQG 344
Query: 227 NEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
NE D AK + S + IK++ NW
Sbjct: 345 NELADSLAKEATKIPSSSHETSYASIGMDIKRMKSENW 382
>gi|226348538|gb|ACO50588.1| pol protein [Human immunodeficiency virus 1]
Length = 584
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I S+ + L+S+I ++ + +
Sbjct: 411 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQSQPDKSESELVSQI----IEQLIKKE 462
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 463 KVYLAWVPAHKGIGGNEQVD 482
>gi|425771876|gb|EKV10308.1| hypothetical protein PDIG_57410 [Penicillium digitatum PHI26]
Length = 124
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 138 NVNSFRLNVVNSVFSAELMAILLCLQNLKYL--PSTKFLLVTDSMSSLQAITSKSCNNAL 195
+ + +N + VF AE + L+ + P +K L DS S + I + N+
Sbjct: 8 DTGAGAINSRSHVFDAEAIGAWRGLEWAIVVAPPRSKIWLCIDSTSVIWCIRGNASNS-- 65
Query: 196 LSKIYSTWLDLVACGKE-----ISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSAS 250
S W +AC + IS W P H GI GNEA D A + + +
Sbjct: 66 -----SQWA-FLACHRAMEQHNISLRWAPGHTGIEGNEAADTLAGEGALRGSAIGM---- 115
Query: 251 DYKPLIKKI 259
+ +P+I I
Sbjct: 116 EAEPMISGI 124
>gi|344311842|gb|AEN04443.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 560
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ + +VTDS +L I ++ + L+++I ++ +
Sbjct: 477 AELQAIQLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLINK 528
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+ I W P+H GI GNE VD
Sbjct: 529 ERIYLSWVPAHKGIGGNEQVD 549
>gi|289187223|gb|ADC92191.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + Y +K + EL AI L LQ+ + +V
Sbjct: 540 YVDGAANRETKLGKAGYVTDKGRQKVVTLTDTTNQKTELQAIHLALQD----SGAEVNIV 595
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 596 TDSQYALGIIQAQPDKSE--SELVSQIIEQLINKEKVYLAWVPAHKGIGGNEQVD 648
>gi|283362103|dbj|BAI65906.1| polyprotein [Human immunodeficiency virus 1]
Length = 535
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ +
Sbjct: 445 TELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLINK 496
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
+++ W P+H GI GNE VD N
Sbjct: 497 EKVYLAWVPAHKGIGGNEQVDKLVSN 522
>gi|380486847|emb|CCF38429.1| hypothetical protein CH063_09515 [Colletotrichum higginsianum]
Length = 402
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 140 NSFRLNVVNSVFSAELMAILLCLQNLKYL----PSTKFLLV-TDSMSSLQAITSKSCN-- 192
+F++ AE+ A++ L+ L P + + V TD +++ + + + N
Sbjct: 112 RAFQVLACQDFCEAEVFAVVAALETAALLSHLMPELRQVTVFTDCKDAIRKLIAAAENAS 171
Query: 193 NALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
+ L+ + + L L A G WCP H GI GN D AK
Sbjct: 172 DTLVKRAVAASLALDAKGVRALVRWCPGHVGIEGNSKADELAKE 215
>gi|36365435|gb|AAQ86651.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 41.2 bits (95), Expect = 0.57, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ + ++ + K+I
Sbjct: 632 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEVVNQIIEQLIKKKKI 685
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 686 YLAWVPAHKGIGGNEQVDKLVSN 708
>gi|339507328|gb|AEJ81076.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ +
Sbjct: 573 TELQAINLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKK 624
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
+++ W P+H GI GNE VD N
Sbjct: 625 EKVYLSWVPAHKGIGGNEQVDKLVSN 650
>gi|341571634|gb|AEK79444.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.8 bits (94), Expect = 0.59, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AILL LQ+ ++ +VTDS +L I ++ + S++ + ++ + ++
Sbjct: 632 AELQAILLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVNQIIEQLIKKEK 685
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 686 IYLSWVPAHKGIGGNEQVD 704
>gi|283362101|dbj|BAI65905.1| polyprotein [Human immunodeficiency virus 1]
Length = 534
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ +
Sbjct: 445 TELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLINK 496
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
+++ W P+H GI GNE VD N
Sbjct: 497 EKVYLAWVPAHKGIGGNEQVDKLVSN 522
>gi|449283665|gb|EMC90270.1| Ribonuclease H1, partial [Columba livia]
Length = 256
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYS 201
AE+ A ++ K K ++ TDS ++ ITS S ++++K
Sbjct: 155 AEIHAACKAIEQAKSQNIKKLIIYTDSKFTINGITSWVDNWKTNGWRTSSGGSVINKEDF 214
Query: 202 TWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK 235
LD ++ G EI +M P H G GNE D A+
Sbjct: 215 ERLDNLSKGIEIQWMHVPGHAGFQGNEEADRLAR 248
>gi|343887422|ref|NP_001230610.1| ribonuclease H1 [Sus scrofa]
Length = 287
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYS 201
AE+ A L+ K +K +L TDSM ++ ITS S + +++K
Sbjct: 186 AEIHAACKALELAKAQNISKLVLYTDSMFTINGITSWVPGWKKNGWRTSTHKEVVNKEDF 245
Query: 202 TWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
L+ +A G ++ +M P H G GNE D A+ +
Sbjct: 246 QELERLAQGMDVQWMHVPGHAGFIGNEEADRLAREGA 282
>gi|307206121|gb|EFN84201.1| hypothetical protein EAI_09989 [Harpegnathos saltator]
Length = 101
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 142 FRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYS 201
F L+ + +F AE+ A+L L+ K ++ TDS S++ +I S +K
Sbjct: 3 FSLSSLIFIFGAEITALLHALRISDERNLNKAIIATDSRSAVSSILKVSD-----AKYTH 57
Query: 202 TWLDLVA--------CGKEISFMWCPSHCGISGNEAVDVAAKNP 237
W+ L+ G + +W PSHC I GNE D K
Sbjct: 58 PWIILIKDILYQLHRRGTIVKLLWIPSHCDIVGNERTDALTKKA 101
>gi|288558569|dbj|BAI68341.1| polyprotein [Human immunodeficiency virus 1]
Length = 326
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + + Y N+ + EL AI L LQ+ ++ +V
Sbjct: 192 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD----SGSEVNIV 247
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I + ++ + +++ W P+H GI GNE VD
Sbjct: 248 TDSQYALGIIQAQPDRSE--SEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQVD 300
>gi|315272203|gb|ADU02660.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 40.8 bits (94), Expect = 0.60, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 116 ILCFTDGSKTENSTSCAY-TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
I +TDG K + AY T N RL V +AE MAI + L++ + T
Sbjct: 609 ITIYTDGGKQDEEGVAAYVTSNGKTKQKRLGPVTHQ-TAERMAIQMALEDTE---ETLVN 664
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVA---CGKEISFMWCPSHCGISGNEAVD 231
+VTDS + IT L S W ++ + + F W P H GI GN+ D
Sbjct: 665 IVTDSYYCWKNITE----GLGLEGPDSPWWPIIQNIRAKEMVYFAWVPGHKGIYGNQLAD 720
Query: 232 VAAK 235
A K
Sbjct: 721 EATK 724
>gi|159031775|dbj|BAF91859.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ +
Sbjct: 446 TELQAINLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKK 497
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
+++ W P+H GI GNE VD N
Sbjct: 498 EKVYLSWVPAHKGIGGNEQVDKLVSN 523
>gi|156062764|ref|XP_001597304.1| hypothetical protein SS1G_01498 [Sclerotinia sclerotiorum 1980]
gi|154696834|gb|EDN96572.1| hypothetical protein SS1G_01498 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1387
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 77/218 (35%), Gaps = 44/218 (20%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK++ + N+ KY + I +TD S T
Sbjct: 1035 YFPPWKKEVPYKVNISKLGKEE--------AAMIHNLAFKYRCKNTITIYTDASSTLEGI 1086
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
S TIN VN V++ EL+ + ++ N P K
Sbjct: 1087 GIGIGIAVILPNGRISHQETINIGVNQL-------VYNGELLGVTKAIEYANSIAQPGNK 1139
Query: 173 FLLVTDSMSSL------QAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226
F + +D+ + L + +SC + + + G EIS W P H + G
Sbjct: 1140 FKIYSDNQAGLFRLKTPSDLPGQSCQIKAIKAAEA----IQNKGAEISLNWVPGHTSVQG 1195
Query: 227 NEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
NE D AK + S + IK++ NW
Sbjct: 1196 NELADSLAKEATKIPSSSHETSYASIGMDIKRMKSENW 1233
>gi|212541120|ref|XP_002150715.1| reverse transcriptase, putative [Talaromyces marneffei ATCC 18224]
gi|210068014|gb|EEA22106.1| reverse transcriptase, putative [Talaromyces marneffei ATCC 18224]
Length = 992
Score = 40.8 bits (94), Expect = 0.62, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 150 VFSAELMAILLCLQNL--KYLPSTKFLLV--TDSMSSLQAITSKSCNN-ALLSKIYSTWL 204
VF ELM + L+ ++LP +L+ +++ LQ+ + + AL +++ ++ L
Sbjct: 732 VFDVELMGVASALEWALERHLPGPIHVLLDAQNAIKRLQSTEPGAGQSLALRARMAASRL 791
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS-----PSFPPLKLCSASDYKPLIKKI 259
L G+ ++ W P H G+ GNE D AAK + P F L L ++
Sbjct: 792 RL--SGRPVTIQWVPGHNGVEGNEQADQAAKRAASKPAGPGFEGLSLAYVRRACTEARRA 849
Query: 260 VQRNW 264
NW
Sbjct: 850 AVENW 854
>gi|306478155|gb|ADM89452.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.8 bits (94), Expect = 0.63, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 119 FTDGSKTENSTS--CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + S Y NK + EL AILL LQ+ + +V
Sbjct: 441 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELHAILLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
TDS +L I ++ + S++ S ++ + ++I W P+H GI GNE VD N
Sbjct: 497 TDSQYALGVIHAQPDKSE--SELVSEIIEQLIKKEKIYLTWVPAHKGIGGNEQVDKLVSN 554
>gi|156039259|ref|XP_001586737.1| hypothetical protein SS1G_11766 [Sclerotinia sclerotiorum 1980]
gi|154697503|gb|EDN97241.1| hypothetical protein SS1G_11766 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1232
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 77/218 (35%), Gaps = 44/218 (20%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK++ + N+ KY + I +TD S T
Sbjct: 880 YFPPWKKEVPYKVNISKLGKEE--------AAMIHNLAFKYRCKNTITIYTDASSTLEGI 931
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
S TIN VN V++ EL+ + ++ N P K
Sbjct: 932 GIGIGIAVILPNGRISHQETINIGVNQL-------VYNGELLGVTKAIEYANSIAQPGNK 984
Query: 173 FLLVTDSMSSL------QAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226
F + +D+ + L + +SC + + + G EIS W P H + G
Sbjct: 985 FKIYSDNQAGLFRLKTPSDLPGQSCQIKAIKAAEA----IQNKGAEISLNWVPGHTSVQG 1040
Query: 227 NEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
NE D AK + S + IK++ NW
Sbjct: 1041 NELADSLAKEATKIPSSSHETSYASIGMDIKRMKSENW 1078
>gi|344311812|gb|AEN04428.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 122 GSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMS 181
G T+ T+N+ N EL AI L LQ+ ++ +VTDS
Sbjct: 456 GYVTDRGRQKVITLNETTNQ----------KTELQAIQLALQD----SGSEVNIVTDSQY 501
Query: 182 SLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
+L I ++ + S+I + ++ + + + W P+H GI GNE VD
Sbjct: 502 ALGIIQAQPDKSE--SEIVNQIIEELIKKEXVYLSWVPAHKGIGGNEQVD 549
>gi|148233804|ref|NP_001090055.1| ribonuclease H1 [Xenopus laevis]
gi|66911791|gb|AAH97857.1| MGC115609 protein [Xenopus laevis]
Length = 292
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 143 RLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS------------KS 190
RL + AE+ A L+ + TK +L TDSM ++ IT +
Sbjct: 180 RLEGRQTNQRAEIQAACRALEQAQAKNITKLVLYTDSMFTINGITKWIHSWKRKGWKLSN 239
Query: 191 CNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
N + + + LD + G +I++M P H G GNEA D
Sbjct: 240 GQNVINREDFEK-LDKLTRGLDINWMHIPGHAGFEGNEAAD 279
>gi|158935175|emb|CAM90426.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ + +VTDS +L I S+ + S I + ++ + ++
Sbjct: 31 AELQAIYLALQD----SEVEVNIVTDSQYALGIIQSQP--DISESDIVNQIIEQLVKKEK 84
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE +D
Sbjct: 85 IYLSWVPAHKGIGGNEQID 103
>gi|344311866|gb|AEN04455.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ + +
Sbjct: 478 ELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLIXKE 529
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
+ W P+H GI GNE VD N
Sbjct: 530 RVYLSWVPAHKGIGGNEQVDKLVSN 554
>gi|159031759|dbj|BAF91851.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ +
Sbjct: 446 TELQAINLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKK 497
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
+++ W P+H GI GNE VD N
Sbjct: 498 EKVYLSWVPAHKGIGGNEQVDKLVSN 523
>gi|344311890|gb|AEN04467.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+++I ++ + +
Sbjct: 478 ELQAIXLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLIXKE 529
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 530 KVYLSWVPAHKGIGGNEQVD 549
>gi|159031769|dbj|BAF91856.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ +
Sbjct: 446 TELQAINLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKK 497
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
+++ W P+H GI GNE VD N
Sbjct: 498 EKVYLSWVPAHKGIGGNEQVDKLVSN 523
>gi|159031767|dbj|BAF91855.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 447 ELQAINLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 498
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 499 KVYLSWVPAHKGIGGNEQVDKLVSN 523
>gi|159031763|dbj|BAF91853.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 447 ELQAINLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 498
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 499 KVYLSWVPAHKGIGGNEQVDKLVSN 523
>gi|159031761|dbj|BAF91852.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 447 ELQAINLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 498
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 499 KVYLSWVPAHKGIGGNEQVDKLVSN 523
>gi|451168897|gb|AGF31520.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 40.8 bits (94), Expect = 0.66, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ + +VTDS +L I ++ + S+I + ++L+ +
Sbjct: 631 AELQAIQLALQD----SGPEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIELLINKER 684
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 685 IYLSWVPAHKGIGGNEQVD 703
>gi|159031757|dbj|BAF91850.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ +
Sbjct: 446 TELQAINLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKK 497
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
+++ W P+H GI GNE VD N
Sbjct: 498 EKVYLSWVPAHKGIGGNEQVDKLVSN 523
>gi|226348626|gb|ACO50632.1| pol protein [Human immunodeficiency virus 1]
Length = 738
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 152 SAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + S+I S ++ + +
Sbjct: 406 QTELQAINLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKE 459
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 460 KVYLAWVPAHKGIGGNEQVD 479
>gi|147898893|ref|NP_001084684.1| ribonuclease H1 [Xenopus laevis]
gi|46249528|gb|AAH68735.1| MGC81203 protein [Xenopus laevis]
Length = 300
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS------------KSCNNALLSKIY 200
AE+ A L+ K TK +L TDSM ++ IT + N + + +
Sbjct: 197 AEIQAACRALEQAKAQNLTKLVLYTDSMFTINGITKWIHSWKRNGWKLSTGKNVINREDF 256
Query: 201 STWLDLVACGKEISFMWCPSHCGISGNEAVD 231
L+ + G +I +M P H G +GNEA D
Sbjct: 257 EN-LEKMTQGLDIKWMHIPGHAGFAGNEAAD 286
>gi|339507441|gb|AEJ81132.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDS---MSSLQAITSKSCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ + +VTDS + LQA KS + L+S+I ++ +
Sbjct: 574 ELQAIXLALQD----SGLEVNIVTDSQYALGILQAQPDKS-ESELVSQI----IEQLIKK 624
Query: 211 KEISFMWCPSHCGISGNEAVDVAAKN 236
+++ W P+H GI GNE VD N
Sbjct: 625 EKVYLAWVPAHKGIGGNEQVDKLVSN 650
>gi|4324847|gb|AAD17111.1| gag-pol polyprotein [Human immunodeficiency virus 1]
Length = 1429
Score = 40.8 bits (94), Expect = 0.69, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ + ++ + C + +
Sbjct: 1059 ELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVNQIIEQLICKERV 1112
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 1113 YLSWVPAHKGIGGNEQVD 1130
>gi|2454622|gb|AAB71689.1| reverse transcriptase [Magnaporthe grisea]
Length = 1295
Score = 40.8 bits (94), Expect = 0.69, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 114 DRILCFTDGSKTENSTSCAYTINKNVNSFR-----------LNVVNSVFSAELMAILLCL 162
D I+ +TDGS+ ++ +C I +FR + + VF AE + L L
Sbjct: 963 DDIVVYTDGSE-KHENNCV-QIGYGWAAFRAGLEFAARAASITPESHVFDAEAIGALKGL 1020
Query: 163 QNL-KYLPSTKFLLVTDSMS---SLQAITSKSCNNALLSKIYSTWLDLV-ACGKEISFMW 217
Q K P + + DS S L+ +S A L + +DL+ E+ W
Sbjct: 1021 QAAAKAQPGARIWICVDSTSVIWGLRGDAPRSSQWAFLE--FHNLVDLLRKQSTEVRVRW 1078
Query: 218 CPSHCGISGNEAVDVAAKNPSPSFP 242
CP H GI GN+ D AK S P
Sbjct: 1079 CPGHQGIPGNDRADELAKAGSAGPP 1103
>gi|328710861|ref|XP_003244383.1| PREDICTED: hypothetical protein LOC100570071 [Acyrthosiphon pisum]
Length = 90
Score = 40.8 bits (94), Expect = 0.69, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 216 MWCPSHCGISGNEAVDVAAKNPSPSFPPLK--LCSASDYKPLIKKIVQRNWQSSW 268
MW P HC I GNE D AAK + PL + + D K +I Q W++ W
Sbjct: 1 MWIPGHCNIEGNELADKAAKQAHLANNPLTSPVFTYQDVKRIIAIEAQNQWENKW 55
>gi|255984504|gb|ACU46324.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEELIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
+I W P+H GI GNE VD
Sbjct: 130 KIYLAWVPAHKGIGGNEQVD 149
>gi|353244976|emb|CCA76093.1| hypothetical protein PIIN_10093 [Piriformospora indica DSM 11827]
Length = 1335
Score = 40.8 bits (94), Expect = 0.70, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 213 ISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
I W P H GI GNE D AK PP + S+Y + + +W + W S
Sbjct: 1146 IMIQWVPGHTGIPGNERADEIAKAACSLAPPNPRTTLSNYLRTARNKLSEDWTNQWTS 1203
>gi|339507198|gb|AEJ81011.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L + ++ + S+I S ++ + +++
Sbjct: 574 ELQAIHLALQD----SGLEVNIVTDSQYALGILQAQPDKSE--SEIVSQIIEQLIKKEKV 627
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 628 YLAWVPAHKGIGGNEKVDKLVSN 650
>gi|255984852|gb|ACU46498.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSXSELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|407915598|gb|EKG09164.1| hypothetical protein MPH_13848 [Macrophomina phaseolina MS6]
Length = 275
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 149 SVFSAELMAILLCLQ----NLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYST 202
VF AE+ L N + L +T +L D+ S +Q I + + + +++ ST
Sbjct: 29 EVFDAEIRGAAEGLTWAATNAEALQATNVVLCIDNTSVIQGIDGHTPASSQSQFTRLKST 88
Query: 203 WLDLVACGKEISFMWCPSHCGISGNEAVDVAAK 235
+L + WCP H GI+GNE D AK
Sbjct: 89 RQELRI---PVETRWCPGHMGITGNEEADQLAK 118
>gi|255984022|gb|ACU46083.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
EL AI L LQ+ + +VTDS +L I ++ + S++ S ++ + ++
Sbjct: 576 TELQAIHLALQD----SGLEVNIVTDSQYALGIIXAQPDKSE--SELVSQIIEQLIKKEK 629
Query: 213 ISFMWCPSHCGISGNEAVDVAAKN 236
+ W P+H GI GNE VD N
Sbjct: 630 VYLAWVPAHKGIGGNEQVDKLVSN 653
>gi|130596|sp|P03371.1|POL_EIAVY RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Integrase; Short=IN
Length = 1145
Score = 40.8 bits (94), Expect = 0.71, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 116 ILCFTDGSKTENSTSCAY-TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
I +TDG K AY T N RL V AE MAI + L++ + +
Sbjct: 620 ITIYTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALEDTR---DKQVN 675
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE---ISFMWCPSHCGISGNEAVD 231
+VTDS + IT L + W ++ +E + F W P H GI GN+ D
Sbjct: 676 IVTDSYYCWKNITE----GLGLEGPQNPWWPIIQNIREKEIVYFAWVPGHKGIYGNQLAD 731
Query: 232 VAAK 235
AAK
Sbjct: 732 EAAK 735
>gi|395507260|ref|XP_003757945.1| PREDICTED: ribonuclease H1 [Sarcophilus harrisii]
Length = 206
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYS 201
AE+ A ++ K +K +L TDSM ++ ITS S +++K
Sbjct: 103 AEIHAACKAIEQAKNQNISKLVLYTDSMFTINGITSWVKDWKKNGWKTSTGKEVINKEDF 162
Query: 202 TWLDLVACGKEISFMWCPSHCGISGNEAVD----VAAKNPSPS 240
LD + G +I ++ P H G +GNE D AK P S
Sbjct: 163 VKLDTLIQGIDIKWIHVPGHSGFAGNEEADRLAREGAKKPQES 205
>gi|288558515|dbj|BAI68315.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + + Y N+ + EL AI L LQ+ ++ +V
Sbjct: 192 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD----SGSEVNIV 247
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S+I + ++ + +++ W P+H GI GNE VD
Sbjct: 248 TDSQYALGIIQAQPDRSE--SEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQVD 300
>gi|159031773|dbj|BAF91858.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 447 ELQAINLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLINKE 498
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 499 KVYLSWVPAHKGIGGNEQVDKLVSN 523
>gi|194220992|ref|XP_001502934.2| PREDICTED: ribonuclease H1-like [Equus caballus]
Length = 359
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYS 201
AE+ A ++ K K +L TDSM ++ IT+ S + +K
Sbjct: 253 AEIHAACKAIEQAKAQNINKLVLYTDSMFTINGITNWVQGWKKNGWRTSTGKEVTNKEDF 312
Query: 202 TWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
LD + G +I +M P H G +GNE D A+
Sbjct: 313 VELDRLTQGMDIQWMHVPGHSGFAGNEEADRLARE 347
>gi|306478251|gb|ADM89500.1| pol protein [Human immunodeficiency virus 1]
Length = 771
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 401 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVSLIIEQLIKKEKV 454
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 455 YLAWVPAHKGIGGNEQVD 472
>gi|226348590|gb|ACO50614.1| pol protein [Human immunodeficiency virus 1]
Length = 748
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 406 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDQSESELVSQI----IEQLIKKE 457
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 458 KVYMAWVPAHKGIGGNEQVDKLVSN 482
>gi|156032517|ref|XP_001585096.1| hypothetical protein SS1G_13956 [Sclerotinia sclerotiorum 1980]
gi|154699358|gb|EDN99096.1| hypothetical protein SS1G_13956 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1326
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 77/218 (35%), Gaps = 44/218 (20%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK++ + N+ KY + I +TD S T
Sbjct: 974 YFPPWKKEVPYKVNISKLGKEE--------AAMIHNLAFKYRCKNTITIYTDASSTLEGI 1025
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
S TIN VN V++ EL+ + ++ N P K
Sbjct: 1026 GIGIGIAVILPNGRISHQETINIGVNQL-------VYNGELLGVTKAIEYANSIAQPGNK 1078
Query: 173 FLLVTDSMSSL------QAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226
F + +D+ + L + +SC + + + G EIS W P H + G
Sbjct: 1079 FKIYSDNQAGLFRLKTPSDLPGQSCQIKAIKAAEA----IQNKGAEISLNWVPGHTSVQG 1134
Query: 227 NEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
NE D AK + S + IK++ NW
Sbjct: 1135 NELADSLAKEATKIPSSSHETSYASIGMDIKRMKSENW 1172
>gi|334312524|ref|XP_001381337.2| PREDICTED: ribonuclease H1-like [Monodelphis domestica]
Length = 342
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 144 LNVVNSVFS------AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS--------- 188
LNV + + AE+ A ++ K K +L TDSM ++ ITS
Sbjct: 224 LNVADRLLGRQTNQRAEIHAACKAIEQAKNQNINKLVLYTDSMFTINGITSWIKDWKKNG 283
Query: 189 --KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
S +++K LD + G +I ++ P H G +GNE D A+
Sbjct: 284 WKTSTGKEVINKEDFVKLDTLTQGIDIKWIHVPGHSGFAGNEEADRLARE 333
>gi|256010972|gb|ACU55342.1| pol protein [Human immunodeficiency virus 1]
Length = 881
Score = 40.8 bits (94), Expect = 0.74, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AILL LQ+ ++ +VTDS +L I ++ + S++ + ++ + ++
Sbjct: 632 AELQAILLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVNQIIEQLIKKEK 685
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 686 IYLSWVPAHKGIGGNEQVD 704
>gi|159031765|dbj|BAF91854.1| polyprotein [Human immunodeficiency virus 1]
Length = 537
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ ++ +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 447 ELQAINLALQD----SGSEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 498
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 499 KVYLSWIPAHKGIGGNEQVDKLVSN 523
>gi|344311814|gb|AEN04429.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 68/168 (40%), Gaps = 28/168 (16%)
Query: 73 IPPWSSV-VPSIDTSLHSGKKDNVS-PSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
IP W V P + + +KD ++ F V N TK G T+
Sbjct: 411 IPEWEFVNTPPLVKLWYQLEKDPIAGXETFYVDGAANRXTK------MGKAGYVTDRGRQ 464
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK- 189
TI++ N EL AI L LQ+ ++ +VTDS +L I ++
Sbjct: 465 KVVTISETTNQ----------KTELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQP 510
Query: 190 -SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
+ L+++I ++ + + + W P+H GI GNE VD N
Sbjct: 511 DKSESELVNQI----IEQLIKKERVYLSWVPAHKGIGGNEQVDKLVSN 554
>gi|255984234|gb|ACU46189.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 78 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 131
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 132 YLAWVPAHKGIGGNEQVD 149
>gi|113171663|gb|ABI30934.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.4 bits (93), Expect = 0.77, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLTWVPAHKGIGGNEQVD 704
>gi|373881399|gb|AEY78036.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ T+ +VTDS +L I ++ + S++ + ++ + + +
Sbjct: 577 ELHAIYLALQD----SGTEVNIVTDSQYALGIIQAQPDKSE--SELVNQIIEQLIRKERV 630
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 631 YLSWVPAHKGIGGNEQVDKLVSN 653
>gi|373881378|gb|AEY78022.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ ++ + +++
Sbjct: 577 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVXQIIEQLIXKEKV 630
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 631 YLSWVPAHKGIGGNEQVDKLVSN 653
>gi|315655565|ref|ZP_07908464.1| ribonuclease H [Mobiluncus curtisii ATCC 51333]
gi|315490220|gb|EFU79846.1| ribonuclease H [Mobiluncus curtisii ATCC 51333]
Length = 198
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Query: 115 RILCFTDGSKTENS--TSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTK 172
I DGS N A+ +++N S +++ ELMA+L L+ +P+
Sbjct: 5 EITVAADGSALGNPGPAGWAWYVDENCWSAGGWTMSTNNRGELMAVLDFLEETSSIPNLT 64
Query: 173 FLLVTDSMSSLQAITS-----------KSCNNALLSKIYSTWLDLVACGKEISFMWCPSH 221
+ DS + ++T K+ A+L+ LD G+ + F W H
Sbjct: 65 IHFLCDSQYVINSVTKWMPGWKRRGWRKADGKAVLNDDLMKRLDAELSGRAVDFRWVKGH 124
Query: 222 CGISGNEAVDVAAKNPSPSF 241
G + NE VD A+ + ++
Sbjct: 125 AGHTLNEKVDQLARGAATAY 144
>gi|293573192|gb|ADE45276.1| pol protein [Human immunodeficiency virus 1]
gi|293573202|gb|ADE45285.1| pol protein [Human immunodeficiency virus 1]
gi|293573212|gb|ADE45294.1| pol protein [Human immunodeficiency virus 1]
gi|293573226|gb|ADE45307.1| pol protein [Human immunodeficiency virus 1]
gi|293573236|gb|ADE45316.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 40.4 bits (93), Expect = 0.78, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 25/126 (19%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ + ++L+ ++I
Sbjct: 635 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVNQIIELLINKEKI 688
Query: 214 SFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQR------NWQSS 267
W P+H GI GNE VD KL SA K L + R + S+
Sbjct: 689 YLAWVPAHKGIGGNEQVD-------------KLVSAGIRKVLFLDGIDRAQEDHEKYHSN 735
Query: 268 WNSVPN 273
W ++ N
Sbjct: 736 WRAMAN 741
>gi|281341314|gb|EFB16898.1| hypothetical protein PANDA_019509 [Ailuropoda melanoleuca]
Length = 241
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYS 201
AE+ A ++ K K +L TDSM ++ IT+ S +++K
Sbjct: 140 AEIHAACKAIEQAKAQNIKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDF 199
Query: 202 TWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
L+ + G +I +M P H G +GNE D A+ +
Sbjct: 200 VALEQLTQGMDIQWMHVPGHSGFTGNEEADRLAREGA 236
>gi|351714605|gb|EHB17524.1| Ribonuclease H1 [Heterocephalus glaber]
Length = 308
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 19/142 (13%)
Query: 114 DRILCFTDGSKTENSTSCA-------YTINKNVN-SFRLNVVNSVFSAELMAILLCLQNL 165
D I+ +TDG + N A + + +N RL + AE+ A ++
Sbjct: 136 DSIIVYTDGCCSSNGRRRARAGIGVYWGPSHPLNVGIRLPGRQTNQRAEIHAACKAIEQA 195
Query: 166 KYLPSTKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYSTWLDLVACGKEIS 214
+ +K +L TDSM ++ ITS S +++K L+ + G +I
Sbjct: 196 RAQNISKLVLYTDSMFTINGITSWVPGWKKNGWRTSTGKEVINKEDFMRLEGLTRGMDIQ 255
Query: 215 FMWCPSHCGISGNEAVDVAAKN 236
+M P H G +GNE D A+
Sbjct: 256 WMHIPGHSGFTGNEEADRLARE 277
>gi|255984548|gb|ACU46346.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|156056779|ref|XP_001594313.1| hypothetical protein SS1G_04120 [Sclerotinia sclerotiorum 1980]
gi|154701906|gb|EDO01645.1| hypothetical protein SS1G_04120 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1114
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 77/218 (35%), Gaps = 44/218 (20%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK++ + N+ KY + I +TD S T
Sbjct: 762 YFPPWKKEVPYKVNISKLGKEE--------AAMIHNLAFKYRCKNTITIYTDASSTLEGI 813
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
S TIN VN V++ EL+ + ++ N P K
Sbjct: 814 GIGIGIAVILPNGRISHQETINIGVNQL-------VYNGELLGVTKAIEYANSIAQPGNK 866
Query: 173 FLLVTDSMSSL------QAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226
F + +D+ + L + +SC + + + G EIS W P H + G
Sbjct: 867 FKIYSDNQAGLFRLKTPSDLPGQSCQIKAIKAAEA----IQNKGAEISLNWVPGHTSVQG 922
Query: 227 NEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
NE D AK + S + IK++ NW
Sbjct: 923 NELADSLAKEATKIPSSSHETSYASIGMDIKRMKSENW 960
>gi|343413761|emb|CCD21213.1| reverse transcriptase (RNA-dependent DNA polymerase) [Trypanosoma
vivax Y486]
Length = 556
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 151 FSAELMAILLCLQ------NLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYST 202
+ AE +A+ L+ L T+ + TDS+ L A+ + +A+LS+I+
Sbjct: 53 YRAECVAMEAVLKRLVNVIELSKTHRTRVVAFTDSLVVLMALNTGPAGVEDAMLSRIWDL 112
Query: 203 WLDLVACGKEISFMWCPSHCGISGNEAVDVAAK--NPSP-SFP 242
L V ++F + SHCG+ NEA D AA+ N P S+P
Sbjct: 113 ILRYVRLRVPVNFQFVFSHCGVPRNEASDTAAEQGNEKPQSYP 155
>gi|302594726|gb|ADL59551.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 38 ELQAINLALQD----SGPEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKV 91
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 92 YLAWVPAHKGIGGNEQVD 109
>gi|255984574|gb|ACU46359.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|400593545|gb|EJP61480.1| reverse transcriptase [Beauveria bassiana ARSEF 2860]
Length = 171
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 14/126 (11%)
Query: 116 ILCFTDGSKTENSTSCAY------TIN-KNVNSFRLNVVNSVFSAELMAILLCLQNLKYL 168
I +TDGS C TI+ K + + V++V++AEL ++L LQ + +
Sbjct: 6 IRIYTDGSGINRWCGCVCSGLQFDTISTKWIQYMGTSDVSTVYTAELRGLVLALQLVLNV 65
Query: 169 PST-----KFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSH 221
T + + TD+ ++LQA+ + C +L + +L I F W P+H
Sbjct: 66 HKTGDNPGRCAIFTDNQAALQALQNPKCPSGQYILIEAVQALDELRRLKLSIQFRWIPAH 125
Query: 222 CGISGN 227
G+ GN
Sbjct: 126 VGVPGN 131
>gi|255984518|gb|ACU46331.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|29243009|emb|CAD70671.1| Pol protein [Simian immunodeficiency virus - mon]
Length = 936
Score = 40.4 bits (93), Expect = 0.82, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKS--CNNALLSKIYSTWLDLVACG 210
AEL A+LL LQN +VTDS + + SK + ++ KI L
Sbjct: 558 AELEAVLLALQN----GPASMNIVTDSQYVMGILASKPEVSESPIVEKIIQQLLG----K 609
Query: 211 KEISFMWCPSHCGISGNEAVD 231
K++ W P+H GI GNE VD
Sbjct: 610 KQVYLSWVPAHKGIGGNEEVD 630
>gi|74273452|gb|ABA01435.1| pol protein [Human immunodeficiency virus 1]
gi|74273461|gb|ABA01443.1| pol protein [Human immunodeficiency virus 1]
gi|74273471|gb|ABA01452.1| pol protein [Human immunodeficiency virus 1]
gi|74273481|gb|ABA01461.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.4 bits (93), Expect = 0.83, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS SL I ++ + S+I S ++ + +++
Sbjct: 633 ELQAIYLALQD----SGSEVNIVTDSQYSLGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLAWVPAHKGIGGNEQVD 704
>gi|343415410|emb|CCD20677.1| hypothetical protein, conserved in T.vivax [Trypanosoma vivax Y486]
Length = 303
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 170 STKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGN 227
T+ TDS+ L A+++ +A+L +I+ L +V ++F + SHCG+ N
Sbjct: 19 GTRAAAFTDSLLPLMALSAGPAGVEDAMLRRIWDLILRIVQLRVSVNFQFVFSHCGVPRN 78
Query: 228 EAVDVAAK--NPSPSFPPLKLCSASDYKPLIKKIVQ 261
EA D AA+ N P P + A+D +++ V+
Sbjct: 79 EAADKAAEQGNVKPQSRPAR---ATDIVAGVERKVR 111
>gi|156034873|ref|XP_001585855.1| hypothetical protein SS1G_13372 [Sclerotinia sclerotiorum 1980]
gi|154698775|gb|EDN98513.1| hypothetical protein SS1G_13372 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 731
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 80/224 (35%), Gaps = 44/224 (19%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK++ + N+ KY + I +TD S T
Sbjct: 380 YFPPWKKEVPYKVNISKLGKEE--------AAMIHNLAFKYRCKNTITIYTDASSTLEGI 431
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
S TIN VN V++ EL+ + ++ N P K
Sbjct: 432 GIGIGIAVILPNGRISHQETINIGVNQL-------VYNGELLGVTKAIEYANSIAQPGNK 484
Query: 173 FLLVTDSMSSL------QAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226
F + +D+ + L + +SC + + + G EIS W P H + G
Sbjct: 485 FKIYSDNQAGLFRLKTPSDLPGQSCQIKAIKAAEA----IQNKGAEISLNWVPGHTSVQG 540
Query: 227 NEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
NE D AK + S + IK++ NW + N+
Sbjct: 541 NELADSLAKEATKIPSSSHETSYASIGMDIKRMKSENWIAILNT 584
>gi|36365543|gb|AAQ86747.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.4 bits (93), Expect = 0.83, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL+AILL LQ+ + +VTDS +L I ++ + S++ + ++ + ++I
Sbjct: 633 ELLAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEVVNQIIEQLIKKEKI 686
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 687 YLAWVPAHKGIGGNEQVDKLVSN 709
>gi|255984562|gb|ACU46353.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|326916464|ref|XP_003204527.1| PREDICTED: ribonuclease H1-like [Meleagris gallopavo]
Length = 253
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 141 SFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----------K 189
S RL + AE+ A ++ K K ++ TDS ++ ITS
Sbjct: 140 SERLPGRQTNQRAEIHAACKAIEQAKSQNIKKLIIYTDSKFTINGITSWVENWKTNGWKT 199
Query: 190 SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
S ++++K LD ++ G EI +M P H G GNE D A+ +
Sbjct: 200 SSGGSVINKEDFQKLDSLSKGIEIQWMHIPGHAGFQGNEEADRLAREGA 248
>gi|255984358|gb|ACU46251.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|238734177|gb|ACR55413.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.4 bits (93), Expect = 0.85, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ T+ +VTDS +L I ++ + S++ S ++ + ++
Sbjct: 632 AELQAIHLALQD----SGTEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEHLIKKEK 685
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 686 VYLAWVPAHKGIGGNEQVD 704
>gi|186940883|dbj|BAG31025.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.4 bits (93), Expect = 0.85, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ N+ S++ S ++ + +++
Sbjct: 633 ELQAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDNSE--SEVVSQIIEQLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLAWVPAHKGIGGNEQVD 704
>gi|407925622|gb|EKG18611.1| hypothetical protein MPH_04146, partial [Macrophomina phaseolina
MS6]
Length = 303
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%)
Query: 210 GKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWN 269
G + W P H + GNE D+ AK + P S Y +K + W++ W
Sbjct: 3 GNRVVIKWVPGHVNVHGNEEADLLAKKAATLPPDTDRPSLVYYGMQVKGRLYDEWENRWK 62
Query: 270 SVPNGNKLKTY 280
S P+ KT+
Sbjct: 63 STPSSAYSKTF 73
>gi|289469888|gb|ADC96599.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.4 bits (93), Expect = 0.85, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS SL I ++ + S+I S ++ + +++
Sbjct: 478 ELQAIYLALQD----SGSEVNIVTDSQYSLGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 531
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 532 YLAWVPAHKGIGGNEQVD 549
>gi|255984728|gb|ACU46436.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|339507447|gb|AEJ81135.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 574 ELQAINLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 625
Query: 212 EISFMWCPSHCGISGNEAVDVAAKN 236
++ W P+H GI GNE VD N
Sbjct: 626 KVYLAWVPAHKGIGGNEQVDKLVSN 650
>gi|113171671|gb|ABI30941.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.4 bits (93), Expect = 0.86, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLTWVPAHKGIGGNEQVD 704
>gi|3163931|emb|CAA06947.1| pol polyprotein precursor [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.86, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLTWVPAHKGIGGNEQVD 707
>gi|294892079|ref|XP_002773884.1| hypothetical protein Pmar_PMAR011746 [Perkinsus marinus ATCC 50983]
gi|239879088|gb|EER05700.1| hypothetical protein Pmar_PMAR011746 [Perkinsus marinus ATCC 50983]
Length = 1178
Score = 40.4 bits (93), Expect = 0.87, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 24/149 (16%)
Query: 106 VNINTKYHDRILCFTDGSKTENSTSCAYTI----------NKNVNSFRLNVVNSVFSAEL 155
+ + + + +TDGS+ + + ++ NK + FRL +++ AE
Sbjct: 881 IKLEQSLREGVRVYTDGSRKDPDEAGTCSVGAAAIIYKHSNKEAHRFRLPPFATIYQAEQ 940
Query: 156 MAILLCLQNLK----YLPSTKFLLVTDSMSSLQAITSKSCN---NALLSKIYSTWLDLVA 208
AI+ L+ LK ++ L +D S LQ I + N +L S ++ +
Sbjct: 941 YAIIGALEALKKDKEVADGSRVLFFSDCRSVLQRILGGGGDHWSNRILEIASSMRVEGIT 1000
Query: 209 CGKEISFMWCPSH---CGISGNEAVDVAA 234
C F+W PSH I GNE D+ A
Sbjct: 1001 C----CFIWIPSHQQDGTIPGNEEADLEA 1025
>gi|10436122|gb|AAG16802.1| pol protein [Human immunodeficiency virus 1]
gi|10436132|gb|AAG16811.1| pol protein [Human immunodeficiency virus 1]
gi|300431893|gb|ADK12794.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.87, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLTWVPAHKGIGGNEQVD 707
>gi|425778854|gb|EKV16957.1| hypothetical protein PDIG_17630 [Penicillium digitatum PHI26]
Length = 872
Score = 40.4 bits (93), Expect = 0.88, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 56/135 (41%), Gaps = 24/135 (17%)
Query: 116 ILCFTDGSKT--ENSTSCAYTINKNVNSFRLNV----VNS---VFSAELMAILLCLQNLK 166
I F+DGS+ E Y VN +++ +NS VF AE + L+
Sbjct: 581 ICVFSDGSEQWQEGIKYVGYGFVLMVNGTQIDTGAGAINSRSHVFDAEAIGAWRGLERAI 640
Query: 167 YL--PSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGK-----EISFMWCP 219
+ P +K L DS S + I + N+ S W +AC + IS W P
Sbjct: 641 AVAPPRSKIWLCIDSTSVIWCIRGNASNS-------SQWA-FLACHRAMEQHNISLRWAP 692
Query: 220 SHCGISGNEAVDVAA 234
H GI GNEA D A
Sbjct: 693 GHTGIEGNEAADTLA 707
>gi|319444174|gb|ADV58187.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.88, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLTWVPAHKGIGGNEQVD 707
>gi|300431863|gb|ADK12767.1| pol protein [Human immunodeficiency virus 1]
gi|300431873|gb|ADK12776.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.88, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLTWVPAHKGIGGNEQVD 707
>gi|87137490|gb|ABD27960.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + +
Sbjct: 31 AELQAIQLALQD----SESEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIENLIKKER 84
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 85 IYLSWVPAHKGIGGNEQVD 103
>gi|300431883|gb|ADK12785.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.89, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLTWVPAHKGIGGNEQVD 707
>gi|319444203|gb|ADV58213.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.90, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLAWVPAHKGIGGNEQVD 707
>gi|319444184|gb|ADV58196.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.90, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLTWVPAHKGIGGNEQVD 707
>gi|300431903|gb|ADK12803.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.90, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLTWVPAHKGIGGNEQVD 707
>gi|158935167|emb|CAM90422.1| pol protein [Simian immunodeficiency virus]
Length = 293
Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ T+ +VTDS +L I ++ + S++ + ++ + +
Sbjct: 31 AELQAIQLALQD----SETEVNIVTDSQYALGIIQAQPDKSE--SELVNQIIEHMIKKDK 84
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 85 VYLSWVPAHRGIGGNEQVD 103
>gi|93210626|gb|ABF00608.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 40.4 bits (93), Expect = 0.90, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 14/83 (16%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSL---QAITSKSCNNALLSKIYSTWLDLVAC 209
AEL AI L LQ+ ++ +VTDS +L QA T KS + L+++I ++
Sbjct: 628 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQTDKS-ESELVNQIIEQLIN---- 678
Query: 210 GKEISFM-WCPSHCGISGNEAVD 231
KE +++ W P+H GI GNE VD
Sbjct: 679 -KERTYLSWVPAHKGIGGNEQVD 700
>gi|291409767|ref|XP_002721174.1| PREDICTED: ribonuclease H1 [Oryctolagus cuniculus]
Length = 286
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 11/109 (10%)
Query: 141 SFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----------K 189
S RL + AE+ A ++ K K +L TDSM ++ IT+
Sbjct: 173 SIRLPGRQTNQRAEIHAACKAIEQAKAQNIHKLVLYTDSMFTINGITNWVEGWKKNGWRT 232
Query: 190 SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
S +++K L+ + G +I +M P H G +GNE D A+ +
Sbjct: 233 SAGKEVINKEDFMQLESLTQGMDIQWMHVPGHSGFTGNEEADRLAREGA 281
>gi|255984744|gb|ACU46444.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 160
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQ+ + +VTDS +L I ++ + L+S+I ++ + +
Sbjct: 78 ELQAIHLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVSQI----IEQLIKKE 129
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 130 KVYLAWVPAHKGIGGNEQVD 149
>gi|319444137|gb|ADV58154.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.4 bits (93), Expect = 0.93, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLAWVPAHKGIGGNEQVD 704
>gi|158935163|emb|CAM90420.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + +
Sbjct: 31 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIESLINKER 84
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 85 VYLSWVPAHKGIGGNEEVD 103
>gi|10436141|gb|AAG16819.1| pol protein [Human immunodeficiency virus 1]
gi|300431913|gb|ADK12812.1| pol protein [Human immunodeficiency virus 1]
gi|300431923|gb|ADK12821.1| pol protein [Human immunodeficiency virus 1]
gi|300431933|gb|ADK12830.1| pol protein [Human immunodeficiency virus 1]
gi|300431943|gb|ADK12839.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.94, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLAWVPAHKGIGGNEQVD 707
>gi|10436103|gb|AAG16785.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.94, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLAWVPAHKGIGGNEQVD 707
>gi|10436170|gb|AAG16844.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.4 bits (93), Expect = 0.94, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLAWVPAHKGIGGNEQVD 704
>gi|10436113|gb|AAG16794.1| pol protein [Human immunodeficiency virus 1]
gi|300431818|gb|ADK12727.1| pol protein [Human immunodeficiency virus 1]
gi|300431827|gb|ADK12735.1| pol protein [Human immunodeficiency virus 1]
gi|300431836|gb|ADK12743.1| pol protein [Human immunodeficiency virus 1]
gi|300431845|gb|ADK12751.1| pol protein [Human immunodeficiency virus 1]
gi|300431854|gb|ADK12759.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.4 bits (93), Expect = 0.94, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLAWVPAHKGIGGNEQVD 704
>gi|319444232|gb|ADV58239.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.94, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLAWVPAHKGIGGNEQVD 707
>gi|319444223|gb|ADV58231.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.94, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLAWVPAHKGIGGNEQVD 707
>gi|319444213|gb|ADV58222.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.94, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLAWVPAHKGIGGNEQVD 707
>gi|319444164|gb|ADV58178.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.94, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLAWVPAHKGIGGNEQVD 707
>gi|319444154|gb|ADV58169.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.4 bits (93), Expect = 0.94, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLAWVPAHKGIGGNEQVD 704
>gi|319444146|gb|ADV58162.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.4 bits (93), Expect = 0.94, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLAWVPAHKGIGGNEQVD 704
>gi|113171655|gb|ABI30927.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.4 bits (93), Expect = 0.94, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLAWVPAHKGIGGNEQVD 704
>gi|10436151|gb|AAG16828.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.94, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLAWVPAHKGIGGNEQVD 707
>gi|10436160|gb|AAG16836.1| pol protein [Human immunodeficiency virus 1]
gi|300431953|gb|ADK12848.1| pol protein [Human immunodeficiency virus 1]
gi|300431962|gb|ADK12856.1| pol protein [Human immunodeficiency virus 1]
gi|300431971|gb|ADK12864.1| pol protein [Human immunodeficiency virus 1]
gi|300431980|gb|ADK12872.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.94, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLAWVPAHKGIGGNEQVD 707
>gi|300432009|gb|ADK12898.1| pol protein [Human immunodeficiency virus 1]
gi|300432018|gb|ADK12906.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.94, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLAWVPAHKGIGGNEQVD 707
>gi|319444241|gb|ADV58247.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.95, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLAWVPAHKGIGGNEQVD 707
>gi|212528742|ref|XP_002144528.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
gi|210073926|gb|EEA28013.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
Length = 431
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 149 SVFSAELMAILLCLQNL--KYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWL 204
VF AEL+ + L+ ++LP +L+ D+ ++++ + T +L + +
Sbjct: 140 EVFDAELVGVASALEWALERHLPGPIHVLL-DAQNAIKRLQSTEPGAGQSLALRAHMAAS 198
Query: 205 DLVACGKEISFMWCPSHCGISGNEAVD 231
L G+ ++ W P H G+ GNE D
Sbjct: 199 RLRLSGRPVTIQWVPGHNGVEGNEQAD 225
>gi|373881375|gb|AEY78020.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S++ + ++ + + +
Sbjct: 577 ELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVNQIIEQLIXKEXV 630
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 631 YLAWVPAHKGIGGNEQVDKLVSN 653
>gi|119197373|ref|XP_001249288.1| hypothetical protein CIMG_10450 [Coccidioides immitis RS]
Length = 207
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 116 ILCFTDGSKTENST---SCAYTINKNVN-SFRLNVVNSVFSAELMAILLCLQ------NL 165
++ ++D SK E S + Y + N+ S+ L VF+AEL I +
Sbjct: 46 LILYSDRSKAEESQYAGAGVYDLQDNIRFSWNLGKYLEVFNAELFTIDKAFKLASSISQS 105
Query: 166 KYLPSTKFLLVTDSMSSLQAITSKSCNNAL--LSKIYSTWLDLVACGKEISFMWCPSHCG 223
+ + + +DS +++Q + ++ N+ L L I T + + W P+H
Sbjct: 106 QSRSISDIWVFSDSQAAIQRLINQDLNSGLYYLQSIRKTAKSIKNQQINLHLHWVPAHVN 165
Query: 224 ISGNEAVDVAAKNPSP 239
I GNE D+A K +
Sbjct: 166 IHGNEEPDLAVKKATE 181
>gi|300431989|gb|ADK12880.1| pol protein [Human immunodeficiency virus 1]
gi|300431999|gb|ADK12889.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.4 bits (93), Expect = 0.97, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 636 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKV 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLAWVPAHKGIGGNEQVD 707
>gi|391379752|gb|AFM44376.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 823
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 453 ELQAINLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEVVSQIIEQLIKKEKV 506
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 507 YLAWVPAHKGIGGNEQVDKLVSN 529
>gi|378343872|gb|AFB81975.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 385
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 30 ELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKV 83
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE +D
Sbjct: 84 YLAWVPAHKGIGGNEQID 101
>gi|322692284|gb|EFY84212.1| reverse transcriptase, putative [Metarhizium acridum CQMa 102]
Length = 1736
Score = 40.4 bits (93), Expect = 0.98, Method: Composition-based stats.
Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 19/167 (11%)
Query: 116 ILCFTDGSKTENSTS-CAYTINKNVNSF-----RLNVVNSVFSAELMAILLCLQNLKYLP 169
++ ++DGS + + + Y +++N S RL VF AE L L+ LP
Sbjct: 1424 LIVYSDGSLSPSGAAGYGYVVHQNRRSVCQGAGRLGPA-EVFDAEAKGALEGLKAALRLP 1482
Query: 170 ST---KFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226
+ + ++ D++++ + + K +++ +++ T+ L ++ W P H I G
Sbjct: 1483 QSATQRIVVCLDNIAAAKCLRGKPPDSS--QRVFLTFQALAKTHRKTEVRWIPGHTKIPG 1540
Query: 227 NEAVDVAAKN------PSPSFPPLKLCSASDYKPLIKKIVQRNWQSS 267
NE D+ AK P+ + P L + + K +VQ W +S
Sbjct: 1541 NEQADILAKTGCAQPEPADAVPTLAFLRKT-ARQRSKTVVQAWWDAS 1586
>gi|156044024|ref|XP_001588568.1| hypothetical protein SS1G_10115 [Sclerotinia sclerotiorum 1980]
gi|154694504|gb|EDN94242.1| hypothetical protein SS1G_10115 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 650
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 76/218 (34%), Gaps = 44/218 (20%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYH--DRILCFTDGSKT---- 125
+ PPW VP GK+ + + N+ KY + I +TD T
Sbjct: 445 YFPPWKKEVPYKVNISKLGKE--------EAAMIHNLAFKYRCKNTITIYTDALSTLEGI 496
Query: 126 -----------ENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTK 172
S TIN VN V++ EL+ + ++ N P K
Sbjct: 497 GIGIGIAIILPNGRISHQETINIGVNQL-------VYNGELLGVTKAIEYANSIAQPGNK 549
Query: 173 FLLVTDSMSSL------QAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226
F + +D+ + L + +SC + + + G EIS W P H + G
Sbjct: 550 FKIYSDNQAGLFRSKTPSDLPGQSCQIKAIKAAEA----IQNKGAEISLNWVPGHTSVQG 605
Query: 227 NEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNW 264
NE D AK + S + IK++ NW
Sbjct: 606 NELADSLAKEATKIPSSSHETSYASIGMDIKRMKSENW 643
>gi|341571479|gb|AEK79338.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.0 bits (92), Expect = 0.99, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL AI L LQ+ ++ +VTDS +L I ++ + N+ L+++I ++
Sbjct: 632 AELHAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDTSNSELVNQIIEQLIN----K 683
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+++ W P+H GI GNE VD
Sbjct: 684 EKVYLSWVPAHKGIGGNEQVD 704
>gi|306478153|gb|ADM89451.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.0 bits (92), Expect = 1.00, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 119 FTDGSKTENSTS--CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + S Y NK + EL AILL LQ+ + +V
Sbjct: 441 YVDGAANRETKSGKAGYVTNKGKQKVISLTDTTNQKTELHAILLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD N
Sbjct: 497 TDSQYALGVIHAQPDKSE--SELVSEIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSN 554
>gi|156039980|ref|XP_001587097.1| hypothetical protein SS1G_12126 [Sclerotinia sclerotiorum 1980]
gi|154696183|gb|EDN95921.1| hypothetical protein SS1G_12126 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 455
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 18/176 (10%)
Query: 74 PPW--SSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTEN-STS 130
P W S + +H K N + S V F N D I+ F+DGSK N ST
Sbjct: 259 PKWTESETREEVLDRIHGPK--NRTKSTTAVDFNNFYNLLPRDDIVIFSDGSKQANGSTG 316
Query: 131 CAYTINKN-----VNSFRLNVVNSVFSAELMAILLCLQ----NLKYLPSTKFLLVTDSMS 181
+ +N SF L + V++ + +A L L+ +++ +T + D++
Sbjct: 317 YGFVEYQNNYKICEGSFALEKMKEVYNTKAIAALEGLRAAIVSIEARIATDIWICLDNIE 376
Query: 182 SLQAITSKSCNNALLSKIYSTWLDLVA--CGKEISFMWCPSHCGISGNEAVDVAAK 235
+ S S ++ KI++++ L + + W P H I+GNEA + K
Sbjct: 377 VATRLLSNSIGSS--QKIFTSFRQLASSWLNGTVRIRWVPGHKDIAGNEAANKVIK 430
>gi|402534193|dbj|BAM37396.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 40.0 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ N+ S+I + ++ + +I
Sbjct: 632 ELHAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDNSE--SEIVNQIIEKLVGKDKI 685
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 686 YLSWVPAHKGIGGNEQVDKLVSN 708
>gi|353241646|emb|CCA73447.1| hypothetical protein PIIN_07401 [Piriformospora indica DSM 11827]
Length = 1244
Score = 40.0 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 31/147 (21%)
Query: 119 FTDGSKTENSTSCAYTINKN---VNSFR----LNVVNSVFSAELMAILLCLQNLKYLPS- 170
+TDGS E S A + +N V + R + ++V EL+ I L + K +P+
Sbjct: 923 YTDGSGMEGMISAAAVLYRNGRRVKTVRCLLGTDTQHTVHEGELVGIALGVHLAKSIPAK 982
Query: 171 -TKFLLVTDSMSSLQAITSKSCNNA--LLSKIYSTWLDLVACGK---------------- 211
K + D+ +++Q+IT N ++++I L+ + G+
Sbjct: 983 VAKVNISLDNQAAIQSITHLGANAGQHVVARIVKE-LESLRAGRNRRNATKSSKDQLSVQ 1041
Query: 212 ---EISFMWCPSHCGISGNEAVDVAAK 235
I F W P H G+ GNEA D AK
Sbjct: 1042 RALRIEFTWVPGHEGVQGNEAADEEAK 1068
>gi|306478205|gb|ADM89477.1| pol protein [Human immunodeficiency virus 1]
gi|306478213|gb|ADM89481.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.0 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 119 FTDGSKTENSTS--CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + S Y NK + EL AILL LQ+ + +V
Sbjct: 441 YVDGAANRETKSGKAGYVTNKGKQKVISLTDTTNQKTELHAILLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD N
Sbjct: 497 TDSQYALGVIHAQPDKSE--SELVSEIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSN 554
>gi|301787875|ref|XP_002929354.1| PREDICTED: ribonuclease H1-like [Ailuropoda melanoleuca]
Length = 285
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYS 201
AE+ A ++ K K +L TDSM ++ IT+ S +++K
Sbjct: 184 AEIHAACKAIEQAKAQNIKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDF 243
Query: 202 TWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
L+ + G +I +M P H G +GNE D A+ +
Sbjct: 244 VALEQLTQGMDIQWMHVPGHSGFTGNEEADRLAREGA 280
>gi|255984038|gb|ACU46091.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
EL AI L LQ+ + +VTDS +L I ++ + S++ S ++ + ++
Sbjct: 576 TELQAINLALQD----SGLEVNIVTDSQYALGIIQAQPDKSX--SELVSQIIEQLIKKEK 629
Query: 213 ISFMWCPSHCGISGNEAVDVAAKN 236
+ W P+H GI GNE VD N
Sbjct: 630 VYLAWVPAHKGIGGNEQVDKLVSN 653
>gi|343420424|emb|CCD19110.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 263
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 171 TKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNE 228
T+ + TDS+S L+A+ + +A+L +I+ L +V ++F + S CG+ NE
Sbjct: 20 TRVVACTDSLSLLKALNTGPAGVEDAILRRIWDLILRIVRSRVSVNFQFVFSRCGVPRNE 79
Query: 229 AVDVAAK--NPSPSFPP 243
A D AA+ N P P
Sbjct: 80 AADKAAEQGNAKPQSHP 96
>gi|343413869|emb|CCD21183.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 284
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 17/141 (12%)
Query: 119 FTDGSKTENSTSCAYTINKNVNSFRLNVVNS------VFSAELMAILLCLQ------NLK 166
+TDGS S A + + R VV ++ AE +A+ L+ L
Sbjct: 15 WTDGSVVLGVLSGAGALVQPKVGRREKVVLGAGSLACIYRAERVAMEAGLKRLVDVIELS 74
Query: 167 YLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGI 224
T+ + TDS+S L A+ + +A+L +I+ L +V ++F SHCG+
Sbjct: 75 KTRRTRVVAFTDSLSLLMALGAVPAVVEDAMLRRIWDLILHIVRRHVSVNFQSVFSHCGL 134
Query: 225 SGNEAVDVAAKN---PSPSFP 242
NEA D AA+ + S+P
Sbjct: 135 PRNEAGDKAAERGNAGTQSYP 155
>gi|319429324|gb|ADV56938.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I + + S++ + ++ + +
Sbjct: 576 AELQAICLALQD----SGSEXNIVTDSQYALGIIQXQPDKSE--SELVNQIIEQLIXKER 629
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 630 VYLSWVPAHKGIGGNEQVD 648
>gi|260179760|gb|ACX34546.1| pol protein [Human immunodeficiency virus 1]
Length = 517
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L+ I ++ + S++ S+ ++ + ++
Sbjct: 147 ELQAIHLALQD----SGLEVNIVTDSQYALEIIQAQPDKSE--SELVSSIIEELIKKDKV 200
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 201 YMAWVPAHKGIGGNEQVD 218
>gi|417398338|gb|JAA46202.1| Putative ribonuclease h1-like protein [Desmodus rotundus]
Length = 284
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYS 201
AE+ A ++ + K +L TDSM ++ IT+ S ++++
Sbjct: 183 AEIHAACRAIEQARAQDIDKLVLYTDSMFTINGITNWLQGWKENGWRTSTGKEVINREDF 242
Query: 202 TWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
LD + G +I +M P H G+ GNE D AK +
Sbjct: 243 LELDRLVQGMDIRWMHVPGHSGLVGNEEADRLAKEGA 279
>gi|238734018|gb|ACR55272.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ + +VTDS +L I ++ + S++ S ++ + ++
Sbjct: 632 AELQAIYLALQD----SGVEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEK 685
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 686 IYLAWVPAHKGIGGNEQVD 704
>gi|391379702|gb|AFM44332.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1007
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 637 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLINKEKV 690
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 691 YLAWVPAHKGIGGNEQVDKLVSN 713
>gi|254728701|gb|ACT79529.1| pol protein [Simian immunodeficiency virus]
Length = 287
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 152 SAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWLDLVAC 209
AEL AILL L++ K K +VTDS L + T ++ L+ I ++
Sbjct: 24 QAELQAILLALKDAK----EKVNIVTDSQYVLGILQGTPDQSDSPLVEXIIQELMN---- 75
Query: 210 GKEISFM-WCPSHCGISGNEAVD 231
KE ++ W P+H GI GNE VD
Sbjct: 76 -KEAVYLNWVPAHKGIGGNEEVD 97
>gi|36365534|gb|AAQ86739.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I + ++ + ++I
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEIVNQIIEQLIKKEKI 686
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 687 YLAWVPAHKGIGGNEQVDKLVSN 709
>gi|363583851|gb|AEW27430.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + +
Sbjct: 635 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLISKER 688
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 689 IYLSWVPAHKGIGGNEQVD 707
>gi|363583815|gb|AEW27400.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + +
Sbjct: 635 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLISKER 688
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 689 IYLSWVPAHKGIGGNEQVD 707
>gi|363583803|gb|AEW27390.1| pol protein [Human immunodeficiency virus 1]
gi|363583809|gb|AEW27395.1| pol protein [Human immunodeficiency virus 1]
gi|363583821|gb|AEW27405.1| pol protein [Human immunodeficiency virus 1]
gi|363583827|gb|AEW27410.1| pol protein [Human immunodeficiency virus 1]
gi|363583833|gb|AEW27415.1| pol protein [Human immunodeficiency virus 1]
gi|363583839|gb|AEW27420.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + +
Sbjct: 635 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLISKER 688
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 689 IYLSWVPAHKGIGGNEQVD 707
>gi|371940413|dbj|BAL45629.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 687 YLAWVPAHKGIGGNEQVDKLVSN 709
>gi|363583857|gb|AEW27435.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + +
Sbjct: 635 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLISKER 688
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 689 IYLSWVPAHKGIGGNEQVD 707
>gi|363583845|gb|AEW27425.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + +
Sbjct: 635 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLISKER 688
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 689 IYLSWVPAHKGIGGNEQVD 707
>gi|317031342|ref|XP_003188764.1| reverse transcriptase [Aspergillus niger CBS 513.88]
Length = 1016
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 19/146 (13%)
Query: 149 SVFSAELMAILLCLQNLKYL----------PSTKFLLVTDSMSSLQAIT---SKSCNNAL 195
SV +AEL+ IL + + + + +++DS S+L AI SKS +
Sbjct: 743 SVHAAELIGILYAINLINRIVLQQRRAGQKRARTVTILSDSTSALLAIQKPGSKS-GQQI 801
Query: 196 LSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN---PSPSFPPLKLCSASDY 252
+ I + G I W P H I GN+A D AK P + P L S
Sbjct: 802 IYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDAADRLAKEAAIPGKTHPFSPLLSRE-- 859
Query: 253 KPLIKKIVQRNWQSSWNSVPNGNKLK 278
+ I++ + W+ W +G L+
Sbjct: 860 RAYIRQGILTQWEKEWKESRDGGHLR 885
>gi|36365489|gb|AAQ86699.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I + ++ + ++I
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEIVNQIIEQLIKKEKI 686
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 687 YLAWVPAHKGIGGNEQVDKLVSN 709
>gi|36365525|gb|AAQ86731.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I + ++ + ++I
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEIVNQIIEQLIKKEKI 686
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 687 YLAWVPAHKGIGGNEQVDKLVSN 709
>gi|373249009|dbj|BAL46015.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 687 YLAWVPAHKGIGGNEQVDKLVSN 709
>gi|156043837|ref|XP_001588475.1| hypothetical protein SS1G_10922 [Sclerotinia sclerotiorum 1980]
gi|154695309|gb|EDN95047.1| hypothetical protein SS1G_10922 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 824
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 69/195 (35%), Gaps = 30/195 (15%)
Query: 74 PPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDR--ILCFTDGSKTENSTSC 131
PPW P +S K+D L NI K+ D+ +TD S TE
Sbjct: 482 PPWKRETPFRVNISNSSKED--------AAILHNIVFKHRDKDTTYIYTDASSTEKGIGI 533
Query: 132 AYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSC 191
+ V ++ A +A KF + +D+ + L + + S
Sbjct: 534 EVEL--------FGVTRAIEYASSIA----------YTGQKFKIYSDNQAGLYRLKTPSD 575
Query: 192 NNALLSKIYSTWLDLV--ACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSA 249
+ ++I + V A G EIS W P H + GNE D AK + P S
Sbjct: 576 HPGQANQIRAIKAAEVIRAKGAEISLNWVPGHTSVEGNELADKLAKEATTIQPTSNETSF 635
Query: 250 SDYKPLIKKIVQRNW 264
++K+ W
Sbjct: 636 GLLGMIVKEYASDQW 650
>gi|158935165|emb|CAM90421.1| pol protein [Simian immunodeficiency virus]
Length = 296
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I + + S+I + ++ + +
Sbjct: 31 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQGQPDKSE--SEIVNQIIESLINKER 84
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 85 VYLSWVPAHKGIGGNEEVD 103
>gi|36365480|gb|AAQ86691.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I + ++ + ++I
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEIVNQIIEQLIKKEKI 686
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 687 YLAWVPAHKGIGGNEQVDKLVSN 709
>gi|343470348|emb|CCD16930.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 1289
Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 165 LKYLPSTKFLLVTDSMSSLQAITSKSC--NNALLSKIYSTWLDLVACGKEISFMWCPSHC 222
L + T+ + +T+S+S L A+++ +A+L +++ L LV ++F + SH
Sbjct: 919 LNQMHRTRVVALTNSLSLLMALSTGPAVVEDAILRRVWDLILQLVRLRVSVNFQFVFSHG 978
Query: 223 GISGNEAVDVAAK--NPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNSVPNGNKLKTY 280
G+ NEA D AA+ N P P + +D +++ V+ S+ G L+T+
Sbjct: 979 GVPRNEAADKAAEQGNAKPQMYPAWI---TDIVTGVERQVRNEMHRSFEE---GRMLRTH 1032
Query: 281 R 281
R
Sbjct: 1033 R 1033
>gi|315272224|gb|ADU02678.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 116 ILCFTDGSKTENSTSCAY-TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
I +TDG K AY T N RL V +AE +AI + L++ K T
Sbjct: 609 ITIYTDGGKQNEEGVAAYVTSNGKTKQKRLGPVTHQ-TAERIAIQMALEDTK---ETLVN 664
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVA---CGKEISFMWCPSHCGISGNEAVD 231
+VTDS + IT L S W ++ + + F W P H GI GN+ D
Sbjct: 665 IVTDSYYCWKNITE----GLGLEGPDSPWWPIIQNIRAKEMVYFAWVPGHKGIYGNQLAD 720
Query: 232 VAAK 235
A K
Sbjct: 721 EATK 724
>gi|425773357|gb|EKV11713.1| hypothetical protein PDIG_48450 [Penicillium digitatum PHI26]
Length = 1136
Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 56/135 (41%), Gaps = 24/135 (17%)
Query: 116 ILCFTDGSKT--ENSTSCAYTINKNVNSFRLNV----VNS---VFSAELMAILLCLQNLK 166
I F+DGS+ E Y VN +++ +NS VF AE + L+
Sbjct: 845 ICVFSDGSEQWQEGIKYVGYGFVLMVNGTQIDTGAGAINSRSHVFDAEAIGAWRGLERAI 904
Query: 167 YL--PSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGK-----EISFMWCP 219
+ P +K L DS S + I + N+ S W +AC + IS W P
Sbjct: 905 AVAPPRSKIWLCIDSTSVIWCIRGNASNS-------SQWA-FLACHRAMEQHNISLRWAP 956
Query: 220 SHCGISGNEAVDVAA 234
H GI GNEA D A
Sbjct: 957 GHTGIEGNEAADTLA 971
>gi|31559690|dbj|BAC77511.1| Gag-Pol fusion protein [Human immunodeficiency virus 1]
Length = 1438
Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + + Y NK + EL AILL LQ+ + +V
Sbjct: 1031 YVDGAASRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAILLALQD----SGVEVNIV 1086
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE +D
Sbjct: 1087 TDSQYALGIIQAQPGKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQID 1139
>gi|192335060|gb|ACF04047.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I +K + S++ S ++ + ++I
Sbjct: 636 ELQAIYLALQD----SGSEVNIVTDSQYALGIIQAKPDKSE--SELVSQIIEELIKKEKI 689
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 690 YLTWVPAHKGIGGNEQVD 707
>gi|156060559|ref|XP_001596202.1| hypothetical protein SS1G_02418 [Sclerotinia sclerotiorum 1980]
gi|154699826|gb|EDN99564.1| hypothetical protein SS1G_02418 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 487
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 83/218 (38%), Gaps = 32/218 (14%)
Query: 72 HIPPWSSVVPSIDTSLHSGKKDNVSP-SVFQVQFLVNINTKYH--DRILCFTDGSKTENS 128
+ PPW V LH K N+S + + N+ KY + I+ +TD S T
Sbjct: 135 YFPPWKKEV------LH---KVNISKLGKEEAAMIHNLAFKYRCKNTIIIYTDASFTLEG 185
Query: 129 TSCAYTIN--------KNVNSFRLNVVNSVFSAELMAILLCLQ--NLKYLPSTKFLLVTD 178
I + + ++V V++ EL+ + ++ N P KF + +D
Sbjct: 186 IGVGIGIAVILPNGRISHQETINIDVNQLVYNGELLEVTKAIEYTNSIAQPGNKFKIYSD 245
Query: 179 SMSSL------QAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDV 232
+ + L + +SC + + + G EIS W P H + GNE D
Sbjct: 246 NQAGLFRLKTPSDLPGQSCQIKAIKAAEA----IQNKGAEISLNWVPGHTSVQGNELADS 301
Query: 233 AAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
AK + S + IK++ NW + N+
Sbjct: 302 LAKEATKIPSSSHETSYASIGMDIKRMKSENWIAILNT 339
>gi|306478015|gb|ADM89382.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENST--SCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ S Y NK + EL AILL LQ+ + +V
Sbjct: 441 YVDGAANRESKLGKAGYVTNKGRQKVVSLTDTTNQQTELQAILLALQD----SGVEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 549
>gi|222428291|gb|ACM49963.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 634 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEVVSQIIEQLINKEKV 687
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 688 YLAWVPAHKGIGGNEQVD 705
>gi|157004996|gb|ABV00705.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 633 ELQAILLALQD----SGVEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLAWVPAHKGIGGNEQVD 704
>gi|29367081|gb|AAO22475.1| pol protein [Simian immunodeficiency virus]
Length = 1011
Score = 40.0 bits (92), Expect = 1.2, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACG 210
AEL AI + LQ+ + +VTDS +L +++ +N ++ +I ++L+
Sbjct: 645 AELTAIKMALQD----SGPRVNIVTDSQYALGILSAAPDQSDNPIVREI----IELMIGK 696
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+EI W P+H GI GNE +D
Sbjct: 697 EEIYLSWVPAHKGIGGNEQID 717
>gi|328859869|gb|EGG08977.1| hypothetical protein MELLADRAFT_61520 [Melampsora larici-populina
98AG31]
Length = 268
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 23/200 (11%)
Query: 87 LHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNV 146
+HS K++ V +F +Q NI + + ++ +DGS A + + NS L +
Sbjct: 72 IHSSKEEAV---IFTLQ---NITERPANTVISSSDGSHIPGKGVGAAALTLDANSLPLRI 125
Query: 147 V------NSVFSAELMAILLCLQNLKYLP--STKFL-LVTDSMSSLQAITSKSCNNALLS 197
++ + A+L I L + N++ T+F +TD +++Q IT +S
Sbjct: 126 RIGEAENHTPYDAKLAGIQLAIANVRNTAPGDTQFFWFITDCQNAIQNITKPLKTQPGMS 185
Query: 198 ---KIYSTWLDLVAC--GKEISFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDY 252
+I + L+ +I+ +WC S G+ D AAK + L SA
Sbjct: 186 TCIQIRKSLNKLLTIFPRSKITIIWCLSSSGVQATIITDEAAKTATTLH--QILTSAPST 243
Query: 253 KPLIKKIVQRNWQSSWNSVP 272
P I+K ++ N Q++ + P
Sbjct: 244 AP-IQKTIKANLQAAADQPP 262
>gi|306478099|gb|ADM89424.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 119 FTDGSKTENSTS--CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + S Y NK + EL AILL LQ+ + +V
Sbjct: 441 YVDGAANRETKSGKAGYVTNKGKQKVTSLTDTTNQKTELHAILLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD
Sbjct: 497 TDSQYALGIIHAQPDKSE--SELVSEIIEQLIKKEKVYLTWVPAHKGIGGNEQVD 549
>gi|238733889|gb|ACR55158.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S++ S ++ + +
Sbjct: 633 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLINKER 686
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 687 IYLAWVPAHKGIGGNEQVD 705
>gi|119507248|dbj|BAF42488.1| Pol [Human immunodeficiency virus 1]
gi|119507258|dbj|BAF42497.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ K ++ +VTDS +L I ++ + S++ + ++ + ++
Sbjct: 632 AELQAIQLALQDSK----SEVNIVTDSQYALGIIQAQPDRSE--SELVNQIIEQLIKKEK 685
Query: 213 ISFMWCPSHCGISGNEAVDVAAKN 236
+ W P+H GI GNE VD N
Sbjct: 686 VYLSWVPAHKGIGGNEQVDKLVSN 709
>gi|108860396|dbj|BAE95918.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ K ++ +VTDS +L I ++ + S++ + ++ + ++
Sbjct: 632 AELQAIQLALQDSK----SEVNIVTDSQYALGIIQAQPDRSE--SELVNQIIEQLIKKEK 685
Query: 213 ISFMWCPSHCGISGNEAVDVAAKN 236
+ W P+H GI GNE VD N
Sbjct: 686 VYLSWVPAHKGIGGNEQVDKLVSN 709
>gi|363583980|gb|AEW27537.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I +K + S + + ++L+ ++
Sbjct: 634 ELQAIYLALQD----SGSEVNIVTDSQYALGLIQAKPDRSE--SDLVNQIIELLIQKDKV 687
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 688 YLSWVPAHKGIGGNEQVDKLVSN 710
>gi|290466019|gb|ADD25361.1| pol protein [Human immunodeficiency virus 1]
Length = 1009
Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AILL LQ+ + +VTDS ++ I S+ + S++ S ++ + +
Sbjct: 634 AELQAILLALQD----SGQEVNIVTDSQYAMGIIHSQPDKSE--SELVSQIIEELIKKER 687
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE +D
Sbjct: 688 VYLSWVPAHKGIGGNEQID 706
>gi|110809906|gb|ABG91338.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 40.0 bits (92), Expect = 1.3, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ N+ S+I + ++ + +++
Sbjct: 632 ELHAIYLALQD----SGSEVNIVTDSQYALGIIQAQPDNSE--SEIVNQIIEQLIKKEKV 685
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 686 YLSWVPAHKGIGGNEQVD 703
>gi|222428399|gb|ACM50049.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACGK 211
EL AI L LQN + +VTDS +L I ++ +AL+S+I ++ + +
Sbjct: 633 ELQAIYLALQN----SGLEVNIVTDSQYALGIIQAQPDKSESALVSQI----IEQLIKKE 684
Query: 212 EISFMWCPSHCGISGNEAVD 231
++ W P+H GI GNE VD
Sbjct: 685 KVYLAWVPAHKGIGGNEQVD 704
>gi|357395183|gb|AET76089.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + + +
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEIVSQIIEQLIKKERV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLAWVPAHKGIGGNEQVD 704
>gi|357395173|gb|AET76080.1| pol protein, partial [Human immunodeficiency virus 1]
gi|357395193|gb|AET76098.1| pol protein, partial [Human immunodeficiency virus 1]
gi|357395203|gb|AET76107.1| pol protein, partial [Human immunodeficiency virus 1]
gi|357395213|gb|AET76116.1| pol protein, partial [Human immunodeficiency virus 1]
gi|357395440|gb|AET76315.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S+I S ++ + + +
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEIVSQIIEQLIKKERV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLAWVPAHKGIGGNEQVD 704
>gi|63098401|gb|AAY32442.1| pol protein [Human immunodeficiency virus 1]
gi|212383245|gb|ACJ25912.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S++ S ++ + +
Sbjct: 629 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLINKER 682
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 683 IYLSWVPAHKGIGGNEQVD 701
>gi|387018090|gb|AFJ51163.1| Ribonuclease H1-like [Crotalus adamanteus]
Length = 294
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 19/144 (13%)
Query: 114 DRILCFTDGSKTENSTSCAYTINKNV--------NSFRLNVVNSVFSAELMAILLCLQNL 165
D + +TDG + N A NS RL+ + AE+ A ++
Sbjct: 146 DYVAVYTDGCCSSNGRQAARAGTGVYWGPDHPLNNSERLHGRQTNQRAEIHAACKAIEQA 205
Query: 166 KYLPSTKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYSTWLDLVACGKEIS 214
K K + TDS ++ +TS S + ++ L ++ G +I
Sbjct: 206 KSQNIRKLAIYTDSKFTINGVTSWIPNWKINGWKTSAGKEVTNREDFERLAKLSEGMDIQ 265
Query: 215 FMWCPSHCGISGNEAVDVAAKNPS 238
+M P H G GNEA D AK +
Sbjct: 266 WMHVPGHAGFPGNEAADRLAKEGA 289
>gi|425779685|gb|EKV17723.1| putative RNA-directed DNA polymerase from transposon X-element
[Penicillium digitatum PHI26]
Length = 1267
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 56/135 (41%), Gaps = 24/135 (17%)
Query: 116 ILCFTDGSKT--ENSTSCAYTINKNVNSFRLNV----VNS---VFSAELMAILLCLQNLK 166
I F+DGS+ E Y VN +++ +NS VF AE + L+
Sbjct: 976 ICVFSDGSEQWQEGIKYVGYGFVLMVNGTQIDTGAGAINSRSHVFDAEAIGAWRGLERAI 1035
Query: 167 YL--PSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGK-----EISFMWCP 219
+ P +K L DS S + I + N+ S W +AC + IS W P
Sbjct: 1036 AVAPPRSKIWLCIDSTSVIWCIRGNASNS-------SQWA-FLACHRAMEQHNISLRWAP 1087
Query: 220 SHCGISGNEAVDVAA 234
H GI GNEA D A
Sbjct: 1088 GHTGIEGNEAADTLA 1102
>gi|212541456|ref|XP_002150883.1| hypothetical protein PMAA_060540 [Talaromyces marneffei ATCC 18224]
gi|210068182|gb|EEA22274.1| hypothetical protein PMAA_060540 [Talaromyces marneffei ATCC 18224]
Length = 370
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 148 NSVFSAELMAILLCLQNL--KYLPSTKFLLV--TDSMSSLQAITSKSCNNALLSKIYSTW 203
+F AEL+ + L+ ++LP +L+ +++ LQ+ T +L + + T
Sbjct: 108 RQLFDAELVGVASALEWALERHLPGPIHVLLDAQNAIKRLQS-TEPGAGQSLALRPHMTA 166
Query: 204 LDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSFP 242
L G+ ++ W P H + GNE D AAK P+ S P
Sbjct: 167 SRLRLSGRPVTIQWVPGHNRVEGNEQADQAAK-PTASKP 204
>gi|392872128|gb|AFM85330.1| pol polyprotein, partial [Simian immunodeficiency virus]
Length = 1006
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 13/88 (14%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAI--TSKSCNNALLSKIYSTWLDLVACG 210
AEL AILL L++ K K +VTDS L + T ++ L+ +I ++
Sbjct: 635 AELQAILLALKDAK----EKVNIVTDSQYVLGILQGTPDQSDSPLVEEIIQELMN----- 685
Query: 211 KEISFM-WCPSHCGISGNEAVD-VAAKN 236
KE ++ W P+H GI GNE VD + +KN
Sbjct: 686 KEAVYLNWVPAHKGIGGNEEVDKLVSKN 713
>gi|403411627|emb|CCL98327.1| predicted protein [Fibroporia radiculosa]
Length = 766
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 19/163 (11%)
Query: 94 NVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENST--SCAY---TINKNVNSFRLNVVN 148
N+ +FQ Q + + N +Y FTDGS N + CA+ + + +NS +
Sbjct: 233 NIWVLIFQ-QVVRDENARY-----LFTDGSLVPNGSRSGCAWLTMSGHNYLNSGKFGAGR 286
Query: 149 -SVFSAELMAILLCLQN-LKYLPS--TKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWL 204
++F AE+MA+ + + L+ P T +L D+ +L I + + L I +
Sbjct: 287 CAIFDAEMMALARGIHSALQGAPQDCTHLVLCVDNAGALSKILNCEMGPSQLVSILAAEK 346
Query: 205 DLVACGK----EISFMWCPSHCGISGNEAVDVAAKNPSPSFPP 243
+ + IS +W PSH + NE VD AK+ S P
Sbjct: 347 VMEFLQRSERHHISLLWVPSHKDVPPNEFVDELAKSALESEQP 389
>gi|36365408|gb|AAQ86627.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ + ++ + ++I
Sbjct: 632 ELQAILLALQD----SGLEINIVTDSQYALGIIQAQPDRSE--SEVVNQIIEQLIKKEKI 685
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 686 YLAWVPAHKGIGGNEQVDKLVSN 708
>gi|36365390|gb|AAQ86611.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ + ++ + ++I
Sbjct: 632 ELQAILLALQD----SGLEINIVTDSQYALGIIQAQPDRSE--SEVVNQIIEQLIKKEKI 685
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 686 YLAWVPAHKGIGGNEQVDKLVSN 708
>gi|299745166|ref|XP_001831512.2| hypothetical protein CC1G_09041 [Coprinopsis cinerea okayama7#130]
gi|298406463|gb|EAU90359.2| hypothetical protein CC1G_09041 [Coprinopsis cinerea okayama7#130]
Length = 289
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 213 ISFMWCPSHCGISGNEAVDVAAKNPS--PSFPPLKLCSASDYKPLIKKIVQRNWQSSWNS 270
I WCPSH GI GNE VD AK + P+ + + + K Q+ W W+
Sbjct: 64 IHLTWCPSHHGIPGNERVDRLAKQATNLAHNAPITISRTNAIR-RAKLAAQKEWTQEWSK 122
Query: 271 VP 272
P
Sbjct: 123 AP 124
>gi|425776684|gb|EKV14892.1| Reverse transcriptase, putative [Penicillium digitatum PHI26]
Length = 994
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 22/143 (15%)
Query: 119 FTDGSKTENSTSCA-YTINKNV-NSFRLNVVNS-----VFSAELMAILLCLQNLKY---- 167
+TDGS + A Y +V N RL + S V++AEL AI + L+ ++Y
Sbjct: 756 YTDGSGYQGGIGAAVYPAYPSVQNESRLCNMGSDDDATVYAAELHAIEMALEVIQYQFTS 815
Query: 168 -------LPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGK---EISFMW 217
L ++ TD+ ++L+AI + + + + + L C K ++ W
Sbjct: 816 NDDWRERLAERGAVIFTDNQAALKAIKNPKMPSGQVY-LEGSLRVLDWCSKSKIQVELRW 874
Query: 218 CPSHCGISGNEAVDVAAKNPSPS 240
P+H GI GNE VD+ AK+ + +
Sbjct: 875 IPAHEGIPGNEHVDMLAKSAATT 897
>gi|407840617|gb|EKG00530.1| hypothetical protein TCSYLVIO_008518, partial [Trypanosoma cruzi]
Length = 426
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 151 FSAELMAILLCLQNLKYLPSTK-----FLLVTDSMSSLQAITSKSCNNALLS--KIYSTW 203
+ E A+LL L+ L +P + L+ TDS S L A+ S + + +I+
Sbjct: 145 YRTESRALLLALEKL-MIPRIQHRRKTLLVFTDSQSLLAALNKGSLSQTDWTEDQIWQRL 203
Query: 204 LDLVACGKEISFMWCPSHCGISGNEAVDVAA 234
L L G + +C HCG+ NE VD A
Sbjct: 204 LTLTCAGWSVHLQFCYGHCGVHANELVDQYA 234
>gi|407227208|emb|CCA61251.1| Pol polyprotein, partial [Human immunodeficiency virus 1]
Length = 952
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ K P +VTDS +L I ++ + S+I + ++ + ++
Sbjct: 631 AELQAIQLALQDSK--PEVN--IVTDSQYALGIIQAQPDRSE--SEIVNQIIEQLIKKEK 684
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 685 VYLSWVPAHKGIGGNEQVD 703
>gi|256011290|gb|ACU55501.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S++ S ++L+ +++
Sbjct: 633 ELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIELLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLAWVPAHKGIGGNEQVD 704
>gi|282598042|gb|ADA83286.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ K +VTDS +L I ++ + S+I + ++ + +
Sbjct: 629 AELQAIHLALQD----SGAKVNIVTDSQYTLGIIQAQPDRSE--SEIVNNIIEELIKKDK 682
Query: 213 ISFMWCPSHCGISGNEAVDVAAKN 236
+ W P+H GI GNE VD N
Sbjct: 683 VYLSWVPAHKGIGGNEQVDKLVSN 706
>gi|45384532|ref|NP_990329.1| ribonuclease H1 precursor [Gallus gallus]
gi|516686|dbj|BAA05382.1| unnamed protein product [Gallus gallus]
Length = 293
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYS 201
AE+ A ++ K K ++ TDS ++ ITS S ++++K
Sbjct: 192 AEIHAACKAIEQAKSQNIKKLIIYTDSKFTINGITSWVENWKTNGWRTSSGGSVINKEDF 251
Query: 202 TWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
LD ++ G EI +M P H G GNE D A+ +
Sbjct: 252 QKLDSLSKGIEIQWMHIPGHAGFQGNEEADRLAREGA 288
>gi|306478013|gb|ADM89381.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 478 ELQAILLALQD----SGVEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKV 531
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 532 YLAWVPAHKGIGGNEQVD 549
>gi|57869609|gb|AAW57655.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + ++
Sbjct: 629 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLINKEK 682
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 683 IYLSWVPAHKGIGGNEQVD 701
>gi|306478217|gb|ADM89483.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 119 FTDGSKTENSTS--CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + S Y NK + EL AILL LQ+ + +V
Sbjct: 441 YVDGAANRETKSGRAGYVTNKGKQKVISLTDTTNQKTELHAILLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD N
Sbjct: 497 TDSQYALGIIHAQPDKSE--SELVSEIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSN 554
>gi|402889986|ref|XP_003908276.1| PREDICTED: ribonuclease H1 [Papio anubis]
Length = 286
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYS 201
AE+ A ++ K +K +L TDSM ++ IT+ S +++K
Sbjct: 185 AEIHAACKAIEQAKAQNISKLVLYTDSMFTINGITNWVQSWKENGWKTSAGKEVINKEDF 244
Query: 202 TWLDLVACGKEISFMWCPSHCGISGNEAVDVAAK 235
L+ + G +I +M P H G GNE D AK
Sbjct: 245 VALERLTQGMDIQWMHIPGHSGFIGNEEADRLAK 278
>gi|373881363|gb|AEY78012.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L L + ++ +VTDS +L I ++ + S++ + ++L+ + +
Sbjct: 577 ELQAICLALXD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVNQIIELLIXKERV 630
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 631 YLSWVPAHKGIGGNEQVDKLVSN 653
>gi|306478197|gb|ADM89473.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 119 FTDGSKTENSTS--CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + S Y NK + EL AILL LQ+ + +V
Sbjct: 441 YVDGAANRETKSGKAGYVTNKGKQKVISLTDTTNQKTELHAILLALQD----SGLEVNIV 496
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
TDS +L I ++ + S++ S ++ + +++ W P+H GI GNE VD N
Sbjct: 497 TDSQYALGIIHAQPDKSE--SELVSEIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSN 554
>gi|86277638|gb|ABC88355.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ + +VTDS +L I ++ + S+I S ++ + ++
Sbjct: 632 AELQAIWLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEK 685
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 686 VYLAWVPAHKGIGGNEQVD 704
>gi|339507206|gb|AEJ81015.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
EL AI L LQ+ + +VTDS +L I ++ + L+++I ++ +
Sbjct: 573 TELQAIYLALQD----SGLEVNIVTDSQYALGIIQAQPDKSESELVNQI----IEQLINK 624
Query: 211 KEISFMWCPSHCGISGNEAVD 231
+++ W P+H GI GNE VD
Sbjct: 625 EKVYLSWVPAHKGIGGNEQVD 645
>gi|242276486|gb|ACS91467.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S++ + +D + ++
Sbjct: 632 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVNQIIDQLIKKEK 685
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 686 VYLSWVPAHKGIGGNEQVD 704
>gi|407739344|gb|AFU32140.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ N S+I S ++ + +++
Sbjct: 633 ELHAIHLALQD----SGSEVNIVTDSQYALGIIQAQPDRNE--SEIVSQIIEELIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLSWVPAHKGIGGNEQVD 704
>gi|45360190|gb|AAS59223.1| pol protein [Human immunodeficiency virus 1]
Length = 947
Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S+I + ++ + ++
Sbjct: 576 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SEIVNQIIEQLIQKEK 629
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 630 IYLSWVPAHKGIGGNEQVD 648
>gi|263200996|gb|ACY70095.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + +VTDS +L I ++ + S++ S ++L+ +++
Sbjct: 635 ELQAIKLALQD----SGLEVNVVTDSQYALGIIQAQPDKSE--SELVSQIIELLINKEKV 688
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 689 YLAWVPAHKGIGGNEQVDKLVSN 711
>gi|36365462|gb|AAQ86675.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ + ++ + ++I
Sbjct: 632 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEVVNQIIEQLIKKEKI 685
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 686 YLAWVPAHKGIGGNEQVDKLVSN 708
>gi|289469870|gb|ADC96590.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 478 ELXAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEVVSQIIEQLINKEKV 531
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 532 YLAWVPAHKGIGGNEQVD 549
>gi|256011074|gb|ACU55393.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 39.7 bits (91), Expect = 1.6, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 119 FTDGSKTENSTS--CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLV 176
+ DG+ + S Y NK + +EL AI L LQ+ + +V
Sbjct: 600 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKSELQAIHLALQD----SGLEVNIV 655
Query: 177 TDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
TDS +L I ++ + S+I S ++ + +++ W P+H GI GNE VD N
Sbjct: 656 TDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEKVYLAWVPAHKGIGGNEKVDKLVSN 713
>gi|73979924|ref|XP_532858.2| PREDICTED: ribonuclease H1 [Canis lupus familiaris]
Length = 285
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYS 201
AE+ A ++ K K +L TDSM ++ IT+ S +++K
Sbjct: 184 AEIHAACKAIEQAKAQNIKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINKEDF 243
Query: 202 TWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
L+ + G +I +M P H G +GNE D A+ +
Sbjct: 244 VALEQLTQGMDIQWMHVPGHSGFTGNEEADRLAREGA 280
>gi|355716669|gb|AES05685.1| ribonuclease H1 [Mustela putorius furo]
Length = 284
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----------KSCNNALLSKIYS 201
AE+ A ++ K K +L TDSM ++ IT+ S ++++
Sbjct: 184 AEIHAACKAIEQAKAQNIKKLVLYTDSMFTINGITNWVQGWKKNGWKTSTGKEVINREDF 243
Query: 202 TWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238
L+ +A G +I +M P H G GNE D A+ +
Sbjct: 244 VALEQLAQGMDIQWMHVPGHSGFVGNEEADRLAREGA 280
>gi|387119182|gb|AFJ52171.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1011
Score = 39.7 bits (91), Expect = 1.6, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ + +VTDS +L I S+ + S I + ++ + ++
Sbjct: 640 AELQAIYLALQD----SEVEVNIVTDSQYALGIIQSQP--DISESDIVNQIIEQLVKKEK 693
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE +D
Sbjct: 694 IYLSWVPAHKGIGGNEQID 712
>gi|156144946|gb|ABU53017.1| pol protein [Simian immunodeficiency virus]
Length = 1011
Score = 39.7 bits (91), Expect = 1.6, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ + +VTDS +L I S+ + S I + ++ + ++
Sbjct: 640 AELQAIYLALQD----SEVEVNIVTDSQYALGIIQSQP--DISESDIVNQIIEQLVKKEK 693
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE +D
Sbjct: 694 IYLSWVPAHKGIGGNEQID 712
>gi|256011622|gb|ACU55667.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 39.7 bits (91), Expect = 1.6, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ S ++ + + +
Sbjct: 632 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEVVSQIIEQLIKKERV 685
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 686 YLAWVPAHKGIGGNEQVD 703
>gi|36365498|gb|AAQ86707.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 1.6, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ + ++ + ++I
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEVVNQIIEQLIKKEKI 686
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 687 YLAWVPAHKGIGGNEQVDKLVSN 709
>gi|313228039|emb|CBY23189.1| unnamed protein product [Oikopleura dioica]
Length = 619
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 22/90 (24%)
Query: 161 CLQNLKYLPSTKFLLVTDS------MSSLQAIT-SKSCNNALLSKIYSTWLDLVACGKEI 213
CL K L KF L T SSLQ +T S+S +++L+SK S W DL E
Sbjct: 432 CLDREKELARVKFHLETIQSTGVLPQSSLQELTGSRSKDDSLISKARSRWADLEGTKNET 491
Query: 214 SFMWCPSHCGISGNEAVDVAAKNPSPSFPP 243
SF+ G+ D PS PP
Sbjct: 492 SFL---------GDRQTD------RPSHPP 506
>gi|37682411|gb|AAQ98110.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I ++ + S++ S ++ + +
Sbjct: 635 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIQKER 688
Query: 213 ISFMWCPSHCGISGNEAVD 231
I W P+H GI GNE VD
Sbjct: 689 IYLSWVPAHKGIGGNEQVD 707
>gi|341571490|gb|AEK79346.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ K +VTDS +L I ++ + S+I S ++ + +++
Sbjct: 633 ELQAINLALQD----SGLKVNIVTDSQYALGIIQAQPDKSE--SEIVSQIIEQLIKKEQV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLAWVPAHKGIGGNEQVD 704
>gi|36365399|gb|AAQ86619.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ + ++ + ++I
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEVVNQIIEQLIKKEKI 686
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 687 YLAWVPAHKGIGGNEQVDKLVSN 709
>gi|36365507|gb|AAQ86715.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ + ++ + ++I
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEVVNQIIEQLIKKEKI 686
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 687 YLAWVPAHKGIGGNEQVDKLVSN 709
>gi|36365453|gb|AAQ86667.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ + ++ + ++I
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEVVNQIIEQLIKKEKI 686
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 687 YLAWVPAHKGIGGNEQVDKLVSN 709
>gi|256011404|gb|ACU55558.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 633 ELQAILLALQD----AGLEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEZLIXKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLSWVPAHKGIGGNEQVD 704
>gi|36365381|gb|AAQ86603.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ + ++ + ++I
Sbjct: 632 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEVVNQIIEQLIKKEKI 685
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 686 YLAWVPAHKGIGGNEQVDKLVSN 708
>gi|36365471|gb|AAQ86683.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ + ++ + ++I
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEVVNQIIEQLIKKEKI 686
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 687 YLAWVPAHKGIGGNEQVDKLVSN 709
>gi|256011614|gb|ACU55663.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIQKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLTWVPAHKGIGGNEQVD 704
>gi|157005074|gb|ABV00775.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 633 ELQAILLALQD----SGVEVNVVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLAWVPAHKGIGGNEQVD 704
>gi|134140582|gb|ABO61054.1| pol protein [Simian immunodeficiency virus]
Length = 1013
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS--KSCNNALLSKIYSTWLDLVACG 210
AEL AIL+ L + K +VTDS +L IT+ ++ + L+ KI L A
Sbjct: 637 AELQAILMALTD----GPPKMNIVTDSQYALGIITAAPETSESPLVEKIIQQLLTKEA-- 690
Query: 211 KEISFMWCPSHCGISGNEAVD 231
I W P+H GI GN+ VD
Sbjct: 691 --IYLSWVPAHKGIGGNQEVD 709
>gi|60544778|gb|AAX22724.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKV 686
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 687 YLAWVPAHKGIGGNEQVD 704
>gi|341494588|gb|AEK79318.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI L LQ+ ++ +VTDS +L I +K + S++ + ++ + ++
Sbjct: 632 AELQAIQLALQD----SGSEVNIVTDSQYALGIIQAKPDRSE--SELVNQIIEQLINKEK 685
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 686 VYLSWVPAHKGIGGNEQVD 704
>gi|164415872|gb|AAU14940.2| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 629 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKEKV 682
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 683 YLAWVPAHKGIGGNEQVD 700
>gi|36365516|gb|AAQ86723.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ + ++ + ++I
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEVVNQIIEQLIKKEKI 686
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 687 YLAWVPAHKGIGGNEQVDKLVSN 709
>gi|315272231|gb|ADU02684.1| pol polyprotein [Equine infectious anemia virus]
Length = 1134
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 116 ILCFTDGSKTENSTSCAY-TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
I +TDG K + AY T N RL V +AE +AI + L++ + T
Sbjct: 609 ITIYTDGGKQDEEGVAAYVTSNGKTKQKRLGPVTHQ-TAERIAIQMALEDTE---ETLIN 664
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVA---CGKEISFMWCPSHCGISGNEAVD 231
+VTDS + IT L S W ++ + + F W P H GI GN+ D
Sbjct: 665 IVTDSYYCWKNITE----GLGLEGPDSPWWPIIQNIRAKEMVYFAWVPGHKGIYGNQLAD 720
Query: 232 VAAK 235
A K
Sbjct: 721 EATK 724
>gi|283444901|gb|ADB20366.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL AI+L LQ+ ++ +VTDS +L I ++ + S++ + ++ + +
Sbjct: 628 AELQAIMLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVNQIIEQLIKKER 681
Query: 213 ISFMWCPSHCGISGNEAVD 231
+ W P+H GI GNE VD
Sbjct: 682 VYLSWVPAHKGIGGNEQVD 700
>gi|256011258|gb|ACU55485.1| pol protein [Human immunodeficiency virus 1]
Length = 1011
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 641 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDKSE--SEVVSQIIEELIKKEKV 694
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 695 YLAWVPAHKGIGGNEQVD 712
>gi|300811070|gb|ADK35805.1| pol polyprotein [Equine infectious anemia virus]
Length = 1135
Score = 39.3 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 116 ILCFTDGSKTENSTSCAY-TINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFL 174
I +TDG K + AY T N RL V +AE +AI + L++ + T
Sbjct: 609 ITIYTDGGKQDEEGVAAYVTSNGKTKQKRLGPVTHQ-TAERIAIQMALEDTE---ETLVN 664
Query: 175 LVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVA---CGKEISFMWCPSHCGISGNEAVD 231
+VTDS + IT L S W ++ + + F W P H GI GN+ D
Sbjct: 665 IVTDSYYCWKNITE----GLGLEGPDSPWWPIIQNIRAKEMVYFAWVPGHKGIYGNQLTD 720
Query: 232 VAAK 235
A K
Sbjct: 721 EATK 724
>gi|36365552|gb|AAQ86755.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 39.3 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AILL LQ+ + +VTDS +L I ++ + S++ + ++ + ++I
Sbjct: 633 ELQAILLALQD----SGLEVNIVTDSQYALGIIQAQPDRSE--SEVVNQIIEQLIKKEKI 686
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 687 YLAWVPAHKGIGGNEQVDKLVSN 709
>gi|22596273|gb|AAN03061.1|AF457056_2 pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 39.3 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ K +VTDS +L I ++ + S++ S ++ + +++
Sbjct: 632 ELQAIKLALQD----SGQKVNIVTDSQYALGIIQAQPDKSE--SELVSQIIEELIKKEQV 685
Query: 214 SFMWCPSHCGISGNEAVDVAAKN 236
W P+H GI GNE VD N
Sbjct: 686 YLAWVPAHKGIGGNEQVDKLVSN 708
>gi|61102529|gb|AAX37676.1| pol protein [Human immunodeficiency virus 1]
gi|61102537|gb|AAX37683.1| pol protein [Human immunodeficiency virus 1]
Length = 427
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ + ++TDS +L I ++ + S++ S ++ + K +
Sbjct: 57 ELQAINLALQD----SGLEVNIITDSQYALGIIQAQPDKSE--SELVSQIIEQLIKKKRV 110
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 111 YLSWVPAHKGIGGNEQVD 128
>gi|212383238|gb|ACJ25909.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 39.3 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKE 212
AEL+AI L LQ+ ++ +VTDS +L I ++ + S++ + ++ + +
Sbjct: 628 AELLAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDKSE--SELVTQIIEELIKKER 681
Query: 213 ISFMWCPSHCGISGNEAVDVAAKN 236
+ W P+H GI GNE VD N
Sbjct: 682 VYLSWVPAHKGIGGNEQVDKLVSN 705
>gi|407741491|gb|AFU33908.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 39.3 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEI 213
EL AI L LQ+ ++ +VTDS +L I ++ + S+I S ++ + K++
Sbjct: 632 ELHAIQLALQD----SGSEVNIVTDSQYALGIIQAQPDRSE--SEIVSQIIEELIKKKKV 685
Query: 214 SFMWCPSHCGISGNEAVD 231
W P+H GI GNE VD
Sbjct: 686 YLSWVPAHKGIGGNEQVD 703
>gi|389738069|gb|EIM79273.1| hypothetical protein STEHIDRAFT_163799 [Stereum hirsutum FP-91666
SS1]
Length = 656
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 23/115 (20%)
Query: 169 PSTKFLLVTD--SMSSLQAITSKSCNNALLSK-------------IYSTWLDLVACGKEI 213
P T+F ++D S + A T K N+++L IYS +L L + G+
Sbjct: 145 PDTRFWAISDWNSFTKPAAQTKKGGNHSVLYTELSHQQADDMRVCIYSLFLSLASTGQ-- 202
Query: 214 SFMWCPSHCGISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSW 268
PS G G+EA++ N + +FPPL C +K I K++ + + + W
Sbjct: 203 ----APSQSGSLGHEALEYIHGNLATAFPPLLRCEGGHWK--IDKLISQLYSNWW 251
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.131 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,423,019,158
Number of Sequences: 23463169
Number of extensions: 175669127
Number of successful extensions: 390093
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 2042
Number of HSP's that attempted gapping in prelim test: 389610
Number of HSP's gapped (non-prelim): 2177
length of query: 282
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 141
effective length of database: 9,050,888,538
effective search space: 1276175283858
effective search space used: 1276175283858
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)