Query psy16967
Match_columns 282
No_of_seqs 240 out of 1182
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 18:16:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00075 RNase_H: RNase H; In 99.9 4.5E-24 9.8E-29 170.4 8.5 117 114-238 2-131 (132)
2 PRK06548 ribonuclease H; Provi 99.9 2.3E-23 4.9E-28 171.7 12.6 123 113-238 3-140 (161)
3 PRK08719 ribonuclease H; Revie 99.9 3E-23 6.5E-28 169.3 13.2 120 114-238 3-145 (147)
4 COG0328 RnhA Ribonuclease HI [ 99.9 6E-23 1.3E-27 166.6 12.3 124 114-238 2-143 (154)
5 PRK00203 rnhA ribonuclease H; 99.9 2.7E-22 5.8E-27 164.5 11.7 122 115-239 3-141 (150)
6 cd06222 RnaseH RNase H (RNase 99.8 4.5E-19 9.8E-24 138.1 14.1 122 117-238 1-130 (130)
7 KOG3752|consensus 99.8 3.1E-18 6.7E-23 154.9 12.0 126 113-238 210-363 (371)
8 PRK13907 rnhA ribonuclease H; 99.8 5.9E-18 1.3E-22 135.0 11.5 119 116-238 2-125 (128)
9 PRK07708 hypothetical protein; 99.7 1.4E-15 3.1E-20 131.6 13.5 127 112-242 70-210 (219)
10 PRK07238 bifunctional RNase H/ 99.5 5.7E-14 1.2E-18 131.4 13.3 118 116-238 3-130 (372)
11 PF13456 RVT_3: Reverse transc 99.3 4.4E-12 9.5E-17 93.4 8.2 84 150-237 1-84 (87)
12 PF00336 DNA_pol_viral_C: DNA 81.3 2.2 4.9E-05 36.4 4.0 90 114-221 93-183 (245)
13 PF05380 Peptidase_A17: Pao re 79.7 6.6 0.00014 32.1 6.3 52 114-167 80-143 (159)
14 KOG1812|consensus 71.5 13 0.00027 35.3 6.6 89 147-238 46-136 (384)
15 COG0296 GlgB 1,4-alpha-glucan 54.8 17 0.00037 36.6 4.3 35 196-230 213-247 (628)
16 PRK10933 trehalose-6-phosphate 48.4 41 0.00089 33.4 5.9 71 154-224 31-108 (551)
17 smart00642 Aamy Alpha-amylase 41.1 89 0.0019 25.7 6.0 30 195-224 68-97 (166)
18 COG1244 Predicted Fe-S oxidore 33.4 63 0.0014 29.9 4.1 34 94-127 78-115 (358)
19 COG3341 Predicted double-stran 32.5 39 0.00084 29.3 2.5 87 148-238 106-199 (225)
20 TIGR02403 trehalose_treC alpha 29.5 1.2E+02 0.0025 30.1 5.7 73 153-225 24-103 (543)
21 PRK14828 undecaprenyl pyrophos 27.1 3.8E+02 0.0083 23.8 8.0 87 131-224 30-123 (256)
22 TIGR02402 trehalose_TreZ malto 24.0 1.7E+02 0.0036 29.1 5.7 73 153-227 108-190 (542)
23 COG0590 CumB Cytosine/adenosin 23.6 2.1E+02 0.0046 23.2 5.3 37 150-186 56-92 (152)
24 PRK10860 tRNA-specific adenosi 21.4 2.7E+02 0.0059 23.1 5.6 32 150-181 60-91 (172)
25 KOG2212|consensus 20.0 1.2E+02 0.0026 28.5 3.4 56 62-125 63-118 (504)
No 1
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=99.90 E-value=4.5e-24 Score=170.42 Aligned_cols=117 Identities=33% Similarity=0.471 Sum_probs=89.9
Q ss_pred CceEEecCCCCCCC--CceEEEEEcCCe-eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhc--
Q psy16967 114 DRILCFTDGSKTEN--STSCAYTINKNV-NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-- 188 (282)
Q Consensus 114 ~~~~iyTDGS~~~~--~~G~gvv~~~~~-~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~-- 188 (282)
+.+.||||||+... ..|+|+++..+. .+..++ ..+++.|||.||..||+.+ . ...++|+|||++++..+..
T Consensus 2 ~~~~iytDgS~~~~~~~~~~g~v~~~~~~~~~~~~-~~s~~~aEl~Ai~~AL~~~-~--~~~v~I~tDS~~v~~~l~~~~ 77 (132)
T PF00075_consen 2 KAIIIYTDGSCRPNPGKGGAGYVVWGGRNFSFRLG-GQSNNRAELQAIIEALKAL-E--HRKVTIYTDSQYVLNALNKWL 77 (132)
T ss_dssp TSEEEEEEEEECTTTTEEEEEEEEETTEEEEEEEE-SECHHHHHHHHHHHHHHTH-S--TSEEEEEES-HHHHHHHHTHH
T ss_pred CcEEEEEeCCccCCCCceEEEEEEECCeEEEeccc-ccchhhhheehHHHHHHHh-h--cccccccccHHHHHHHHHHhc
Confidence 46899999998753 367776555444 555565 8899999999999999944 3 4999999999999998877
Q ss_pred ---CCCCc----hHHHHHHHHHHHHHhCCCceEEEecCCcCCC-cccHHHHHHhcCCC
Q psy16967 189 ---KSCNN----ALLSKIYSTWLDLVACGKEISFMWCPSHCGI-SGNEAVDVAAKNPS 238 (282)
Q Consensus 189 ---~~~~~----~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi-~gNe~AD~lAk~a~ 238 (282)
.+... ++..+|.+. + ..+..|.|+|||||+|+ .||+.||+|||+|+
T Consensus 78 ~~~~~~~~~~~~~i~~~i~~~---~-~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~a~ 131 (132)
T PF00075_consen 78 HGNGWKKTSNGRPIKNEIWEL---L-SRGIKVRFRWVPGHSGVPQGNERADRLAKEAA 131 (132)
T ss_dssp HHTTSBSCTSSSBHTHHHHHH---H-HHSSEEEEEESSSSSSSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhheeec---c-ccceEEeeeeccCcCCCchhHHHHHHHHHHhc
Confidence 33222 244555555 3 45789999999999999 69999999999763
No 2
>PRK06548 ribonuclease H; Provisional
Probab=99.90 E-value=2.3e-23 Score=171.66 Aligned_cols=123 Identities=24% Similarity=0.302 Sum_probs=94.2
Q ss_pred CCceEEecCCCCCCC--CceEEEEEcCCe-eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhc-
Q psy16967 113 HDRILCFTDGSKTEN--STSCAYTINKNV-NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS- 188 (282)
Q Consensus 113 ~~~~~iyTDGS~~~~--~~G~gvv~~~~~-~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~- 188 (282)
+..+.||||||+.++ ..|+|+++.++. .+.. ....|++.|||.|++.||+.+.. ....|.|+|||++|++++..
T Consensus 3 ~~~~~IytDGa~~gnpg~~G~g~~~~~~~~~~g~-~~~~TNnraEl~Aii~aL~~~~~-~~~~v~I~TDS~yvi~~i~~W 80 (161)
T PRK06548 3 NNEIIAATDGSSLANPGPSGWAWYVDENTWDSGG-WDIATNNIAELTAVRELLIATRH-TDRPILILSDSKYVINSLTKW 80 (161)
T ss_pred CCEEEEEEeeccCCCCCceEEEEEEeCCcEEccC-CCCCCHHHHHHHHHHHHHHhhhc-CCceEEEEeChHHHHHHHHHH
Confidence 455999999999874 378886654332 2212 24579999999999999986643 34679999999999999984
Q ss_pred --------CCCCch--H-HHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCC
Q psy16967 189 --------KSCNNA--L-LSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238 (282)
Q Consensus 189 --------~~~~~~--~-~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~ 238 (282)
+...++ + -+++++.+..+... ..|+|.||+||+|++|||.||+||++|+
T Consensus 81 ~~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~-~~v~~~wVkgHsg~~gNe~aD~LA~~aa 140 (161)
T PRK06548 81 VYSWKMRKWRKADGKPVLNQEIIQEIDSLMEN-RNIRMSWVNAHTGHPLNEAADSLARQAA 140 (161)
T ss_pred HHHHHHCCCcccCCCccccHHHHHHHHHHHhc-CceEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 222333 3 26676666666655 4799999999999999999999999988
No 3
>PRK08719 ribonuclease H; Reviewed
Probab=99.90 E-value=3e-23 Score=169.26 Aligned_cols=120 Identities=19% Similarity=0.253 Sum_probs=91.7
Q ss_pred CceEEecCCCCCCCC-----ceEEEE-EcC--Ce---eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHH
Q psy16967 114 DRILCFTDGSKTENS-----TSCAYT-INK--NV---NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSS 182 (282)
Q Consensus 114 ~~~~iyTDGS~~~~~-----~G~gvv-~~~--~~---~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~a 182 (282)
..++||||||+.+++ +|+|++ ... .. .+..+....|++.|||.|++.||+.+... ..|+|||+++
T Consensus 3 ~~~~iYtDGs~~~n~~~~~~~G~G~vv~~~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~aL~~~~~~----~~i~tDS~yv 78 (147)
T PRK08719 3 ASYSIYIDGAAPNNQHGCVRGGIGLVVYDEAGEIVDEQSITVNRYTDNAELELLALIEALEYARDG----DVIYSDSDYC 78 (147)
T ss_pred ceEEEEEecccCCCCCCCCCcEEEEEEEeCCCCeeEEEEecCCCCccHHHHHHHHHHHHHHHcCCC----CEEEechHHH
Confidence 468999999997654 489954 332 21 33345556799999999999999998653 3799999999
Q ss_pred HHHHh--------cCCCCc-h--H-HHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCC
Q psy16967 183 LQAIT--------SKSCNN-A--L-LSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238 (282)
Q Consensus 183 l~~l~--------~~~~~~-~--~-~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~ 238 (282)
+++++ +.+..+ + + -..+++.+..+.. ...|+|.|||||+|++|||.||+||++|+
T Consensus 79 i~~i~~~~~~W~~~~w~~s~g~~v~n~dl~~~i~~l~~-~~~i~~~~VkgH~g~~~Ne~aD~lA~~a~ 145 (147)
T PRK08719 79 VRGFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELRA-RKYVEVEKVTAHSGIEGNEAADMLAQAAA 145 (147)
T ss_pred HHHHHHHHHHHHhCCcccCCCcccccHHHHHHHHHHhC-CCcEEEEEecCCCCChhHHHHHHHHHHHh
Confidence 99994 444332 2 1 2556666666655 46799999999999999999999999886
No 4
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=99.89 E-value=6e-23 Score=166.64 Aligned_cols=124 Identities=23% Similarity=0.244 Sum_probs=100.5
Q ss_pred CceEEecCCCCCCC--CceEEEEEc-CCe---eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHh
Q psy16967 114 DRILCFTDGSKTEN--STSCAYTIN-KNV---NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAIT 187 (282)
Q Consensus 114 ~~~~iyTDGS~~~~--~~G~gvv~~-~~~---~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~ 187 (282)
..+.||||||+..+ ..|+|+++. +.. .+..+. .+|++.+|++|++.||+.+...+...|.|+|||++++++|.
T Consensus 2 ~~v~if~DGa~~gNpG~gG~g~vl~~~~~~~~~s~~~~-~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~i~ 80 (154)
T COG0328 2 KKVEIFTDGACLGNPGPGGWGAVLRYGDGEKELSGGEG-RTTNNRAELRALIEALEALKELGACEVTLYTDSKYVVEGIT 80 (154)
T ss_pred CceEEEecCccCCCCCCceEEEEEEcCCceEEEeeeee-cccChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHH
Confidence 35899999999874 388995543 322 333344 88999999999999999999888999999999999999998
Q ss_pred cC---CCCc--------h-HHHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCC
Q psy16967 188 SK---SCNN--------A-LLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238 (282)
Q Consensus 188 ~~---~~~~--------~-~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~ 238 (282)
.+ +... + ....+++.+.++......|.+.|||||+|.++||.||+||+.|+
T Consensus 81 ~w~~~w~~~~w~~~~~~pvkn~dl~~~~~~~~~~~~~v~~~WVkgH~g~~~NeraD~LA~~~~ 143 (154)
T COG0328 81 RWIVKWKKNGWKTADKKPVKNKDLWEELDELLKRHELVFWEWVKGHAGHPENERADQLAREAA 143 (154)
T ss_pred HHHhhccccCccccccCccccHHHHHHHHHHHhhCCeEEEEEeeCCCCChHHHHHHHHHHHHH
Confidence 43 1111 1 24577777777877777999999999999999999999999987
No 5
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=99.88 E-value=2.7e-22 Score=164.53 Aligned_cols=122 Identities=22% Similarity=0.238 Sum_probs=89.7
Q ss_pred ceEEecCCCCCCC--CceEEEE-EcCCe-eee-ecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcC
Q psy16967 115 RILCFTDGSKTEN--STSCAYT-INKNV-NSF-RLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK 189 (282)
Q Consensus 115 ~~~iyTDGS~~~~--~~G~gvv-~~~~~-~~~-~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~~ 189 (282)
.+.||||||+.++ ..|+|++ ...+. ..+ ......|++.|||.|++.||+.+.. ...+.|+|||++++++|..+
T Consensus 3 ~v~iytDGs~~~n~~~~g~g~v~~~~~~~~~~~~~~~~~TN~~aEL~Ai~~AL~~~~~--~~~v~I~tDS~yvi~~i~~w 80 (150)
T PRK00203 3 QVEIYTDGACLGNPGPGGWGAILRYKGHEKELSGGEALTTNNRMELMAAIEALEALKE--PCEVTLYTDSQYVRQGITEW 80 (150)
T ss_pred eEEEEEEecccCCCCceEEEEEEEECCeeEEEecCCCCCcHHHHHHHHHHHHHHHcCC--CCeEEEEECHHHHHHHHHHH
Confidence 4899999999864 3788854 33333 222 2234678999999999999998864 46799999999999999862
Q ss_pred --------CC-Cch--H-HHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCCC
Q psy16967 190 --------SC-NNA--L-LSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSP 239 (282)
Q Consensus 190 --------~~-~~~--~-~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~ 239 (282)
+. .++ + -..+++.+.++.. ...|.|.|||||+|++||+.||+||++|+.
T Consensus 81 ~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~~-~~~v~~~wV~~H~~~~~N~~AD~lA~~a~~ 141 (150)
T PRK00203 81 IHGWKKNGWKTADKKPVKNVDLWQRLDAALK-RHQIKWHWVKGHAGHPENERCDELARAGAE 141 (150)
T ss_pred HHHHHHcCCcccCCCccccHHHHHHHHHHhc-cCceEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 21 121 2 1344444444443 378999999999999999999999998873
No 6
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=99.81 E-value=4.5e-19 Score=138.07 Aligned_cols=122 Identities=26% Similarity=0.325 Sum_probs=95.2
Q ss_pred EEecCCCCCCC--CceEEEEE-cCCe----eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcC
Q psy16967 117 LCFTDGSKTEN--STSCAYTI-NKNV----NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK 189 (282)
Q Consensus 117 ~iyTDGS~~~~--~~G~gvv~-~~~~----~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~~ 189 (282)
.+|||||...+ ++|+|++. +.+. .........+++.+|+.|++.||+.+...+..++.|++||+.++..+.+.
T Consensus 1 ~~~~Dgs~~~~~~~~g~g~v~~~~~~~~~~~~~~~~~~~s~~~aEl~al~~al~~~~~~~~~~i~i~~Ds~~~~~~~~~~ 80 (130)
T cd06222 1 VIYTDGSCRGNPGPAGAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALELALELGGKKVNIYTDSQYVINALTGW 80 (130)
T ss_pred CEEecccCCCCCCceEEEEEEEeCCCeEEEeccccCCCCcHHHHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHhhcc
Confidence 48999999875 58888654 3322 11122257799999999999999999888899999999999999999987
Q ss_pred CCC-chHHHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCC
Q psy16967 190 SCN-NALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238 (282)
Q Consensus 190 ~~~-~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~ 238 (282)
... ......++..+..+...+..+.|.|||+|+|..+|+.||.||++|.
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~~~~ 130 (130)
T cd06222 81 YEGKPVKNVDLWQRLLALLKRFHKVRFEWVPGHSGIEGNERADALAKEAA 130 (130)
T ss_pred ccCCChhhHHHHHHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHHhhC
Confidence 652 2223344444444556788999999999999999999999999874
No 7
>KOG3752|consensus
Probab=99.77 E-value=3.1e-18 Score=154.87 Aligned_cols=126 Identities=22% Similarity=0.225 Sum_probs=97.2
Q ss_pred CCceEEecCCCCCCCC-----ceEEEE-EcCCe--eeeecC-CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHH
Q psy16967 113 HDRILCFTDGSKTENS-----TSCAYT-INKNV--NSFRLN-VVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSL 183 (282)
Q Consensus 113 ~~~~~iyTDGS~~~~~-----~G~gvv-~~~~~--~~~~l~-~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al 183 (282)
.+.+++|||||+..+| +|+||. .++.. .+.++. ..+++|.|||.||..||+.+.+....+++|.|||++++
T Consensus 210 ~~~~vvytDGS~~~ng~~~~~AGyGvywg~~~e~N~s~pv~~g~qtNnrAEl~Av~~ALkka~~~~~~kv~I~TDS~~~i 289 (371)
T KOG3752|consen 210 IEIQVVYTDGSSSGNGRKSSRAGYGVYWGPGHELNVSGPLAGGRQTNNRAELIAAIEALKKARSKNINKVVIRTDSEYFI 289 (371)
T ss_pred ccceEEEecCccccCCCCCCcceeEEeeCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhcCCCcEEEEechHHHH
Confidence 3448999999998754 799954 44444 666764 78999999999999999999988888999999999999
Q ss_pred HHHhcCCCC-----------ch----HH--HHHHHHHHHHHh--CCCceEEEecCCcCCCcccHHHHHHhcCCC
Q psy16967 184 QAITSKSCN-----------NA----LL--SKIYSTWLDLVA--CGKEISFMWCPSHCGISGNEAVDVAAKNPS 238 (282)
Q Consensus 184 ~~l~~~~~~-----------~~----~~--~~i~~~~~~l~~--~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~ 238 (282)
++|+.+.+. ++ ++ ...+..+.+|.+ .+.+|.+.||+||.|+.||+.||.||+++.
T Consensus 290 ~~l~~wv~~~k~~~~k~~~~~~~i~~~v~n~~~~~e~~~l~q~~~~~~vq~~~V~Gh~gi~gne~Ad~lARkgs 363 (371)
T KOG3752|consen 290 NSLTLWVQGWKKNGWKTSNGSDRICAYVKNQDFFNELDELEQEISNKKVQQEYVGGHSGILGNEMADALARKGS 363 (371)
T ss_pred HHHHHHHhhhccCccccccCCCccceeeecchHHHHHHHHHhhhccCceEEEEecCcCCcchHHHHHHHHhhhh
Confidence 999865221 11 01 122222233332 468999999999999999999999999875
No 8
>PRK13907 rnhA ribonuclease H; Provisional
Probab=99.76 E-value=5.9e-18 Score=134.97 Aligned_cols=119 Identities=20% Similarity=0.194 Sum_probs=92.9
Q ss_pred eEEecCCCCCCC--CceEEEEEc-CCe-eeee-cCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcCC
Q psy16967 116 ILCFTDGSKTEN--STSCAYTIN-KNV-NSFR-LNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKS 190 (282)
Q Consensus 116 ~~iyTDGS~~~~--~~G~gvv~~-~~~-~~~~-l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~~~ 190 (282)
+.||||||+..+ ..|+|+++. ... ...+ .....+++.||+.|++.||+.+...+..++.|+|||+.++..+++.+
T Consensus 2 ~~iy~DGa~~~~~g~~G~G~vi~~~~~~~~~~~~~~~~tn~~AE~~All~aL~~a~~~g~~~v~i~sDS~~vi~~~~~~~ 81 (128)
T PRK13907 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKEY 81 (128)
T ss_pred EEEEEeeCCCCCCCccEEEEEEEECCeeEEEEecccccCCcHHHHHHHHHHHHHHHhCCCCEEEEEechHHHHHHHhHHH
Confidence 689999999874 489996643 322 2222 22457999999999999999999988889999999999999999876
Q ss_pred CCchHHHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCC
Q psy16967 191 CNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238 (282)
Q Consensus 191 ~~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~ 238 (282)
..+.-...+.+.+..+......+.|.|||+ ++|+.||.||+.|.
T Consensus 82 ~~~~~~~~l~~~~~~l~~~f~~~~~~~v~r----~~N~~Ad~LA~~a~ 125 (128)
T PRK13907 82 AKNKMFAPLLEEALQYIKSFDLFFIKWIPS----SQNKVADELARKAI 125 (128)
T ss_pred hcChhHHHHHHHHHHHHhcCCceEEEEcCc----hhchhHHHHHHHHH
Confidence 543334555555555667778889999996 59999999999875
No 9
>PRK07708 hypothetical protein; Validated
Probab=99.66 E-value=1.4e-15 Score=131.64 Aligned_cols=127 Identities=15% Similarity=0.070 Sum_probs=94.2
Q ss_pred CCCceEEecCCCCCC--CCceEEEEE-cC-C-e-ee----eecCCCCchHHHHHHHHHHHHHHhhcCCCCe--EEEEeCc
Q psy16967 112 YHDRILCFTDGSKTE--NSTSCAYTI-NK-N-V-NS----FRLNVVNSVFSAELMAILLCLQNLKYLPSTK--FLLVTDS 179 (282)
Q Consensus 112 ~~~~~~iyTDGS~~~--~~~G~gvv~-~~-~-~-~~----~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~--i~I~sDS 179 (282)
.++.+++|+|||+.. +++|+|+++ +. + . .. ..++...+++.||+.|++.||+.+...+.+. |.|++||
T Consensus 70 ep~~~~vY~DGs~~~n~g~aG~GvVI~~~~g~~~~~~~~~~~l~~~~TNN~AEy~Ali~aL~~A~e~g~~~~~V~I~~DS 149 (219)
T PRK07708 70 EPHEILVYFDGGFDKETKLAGLGIVIYYKQGNKRYRIRRNAYIEGIYDNNEAEYAALYYAMQELEELGVKHEPVTFRGDS 149 (219)
T ss_pred CCCcEEEEEeeccCCCCCCcEEEEEEEECCCCEEEEEEeeccccccccCcHHHHHHHHHHHHHHHHcCCCcceEEEEecc
Confidence 466799999999864 458889543 32 2 2 11 2355567999999999999999999887654 8999999
Q ss_pred HHHHHHHhcCCCC-chHHHHHHHHHHHHHhC-CCceEEEecCCcCCCcccHHHHHHhcCCCCCCC
Q psy16967 180 MSSLQAITSKSCN-NALLSKIYSTWLDLVAC-GKEISFMWCPSHCGISGNEAVDVAAKNPSPSFP 242 (282)
Q Consensus 180 ~~al~~l~~~~~~-~~~~~~i~~~~~~l~~~-~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~~p 242 (282)
+.+++.+++.+.. ++....+.+.+..+.+. ...+.|.||| +..|+.||+||+.|+...|
T Consensus 150 qlVi~qi~g~wk~~~~~l~~y~~~i~~l~~~~~l~~~~~~Vp----R~~N~~AD~LAk~Al~~~~ 210 (219)
T PRK07708 150 QVVLNQLAGEWPCYDEHLNHWLDRIEQKLKQLKLTPVYEPIS----RKQNKEADQLATQALEGTV 210 (219)
T ss_pred HHHHHHhCCCceeCChhHHHHHHHHHHHHhhCCceEEEEECC----chhhhHHHHHHHHHHhcCC
Confidence 9999999998654 33444454544444333 3458889998 6789999999999995444
No 10
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.55 E-value=5.7e-14 Score=131.44 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=93.5
Q ss_pred eEEecCCCCCCC--CceEEEEE-cC--Ce--ee--eecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHH
Q psy16967 116 ILCFTDGSKTEN--STSCAYTI-NK--NV--NS--FRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAI 186 (282)
Q Consensus 116 ~~iyTDGS~~~~--~~G~gvv~-~~--~~--~~--~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l 186 (282)
+.||||||+..+ ..|+|+++ +. +. .. ..++ .+|++.||+.|++.||+.+...+.+.+.|++||+.+++.+
T Consensus 3 ~~i~~DGa~~~n~g~aG~G~vi~~~~~~~~~~~~~~~~~-~~tnn~AE~~All~gL~~a~~~g~~~v~i~~DS~lvi~~i 81 (372)
T PRK07238 3 VVVEADGGSRGNPGPAGYGAVVWDADRGEVLAERAEAIG-RATNNVAEYRGLIAGLEAAAELGATEVEVRMDSKLVVEQM 81 (372)
T ss_pred EEEEecCCCCCCCCceEEEEEEEeCCCCcEEEEeecccC-CCCchHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 689999999975 47899553 32 21 12 2233 6788999999999999999998889999999999999999
Q ss_pred hcCCC-CchHHHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCC
Q psy16967 187 TSKSC-NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238 (282)
Q Consensus 187 ~~~~~-~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~ 238 (282)
.+.+. .+.-...+.+.+..+.+.+..+.|.|||. .+|+.||.||+.|.
T Consensus 82 ~~~~~~~~~~l~~~~~~i~~l~~~f~~~~i~~v~r----~~N~~AD~LA~~a~ 130 (372)
T PRK07238 82 SGRWKVKHPDMKPLAAQARELASQFGRVTYTWIPR----ARNAHADRLANEAM 130 (372)
T ss_pred CCCCccCChHHHHHHHHHHHHHhcCCceEEEECCc----hhhhHHHHHHHHHH
Confidence 88764 34434455555566777788999999995 78999999999886
No 11
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=99.34 E-value=4.4e-12 Score=93.36 Aligned_cols=84 Identities=25% Similarity=0.212 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcCCCCchHHHHHHHHHHHHHhCCCceEEEecCCcCCCcccHH
Q psy16967 150 VFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEA 229 (282)
Q Consensus 150 ~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~~~~~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~ 229 (282)
+..||+.|+..||+.+...+..+|.|+|||+.++..+++..........+...+..+.+....+.|.||| .++|..
T Consensus 1 ~~~aE~~al~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~----r~~N~~ 76 (87)
T PF13456_consen 1 PLEAEALALLEALQLAWELGIRKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDRFWNVSVSHIP----REQNKV 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHCCT-SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCCCSCEEEEE------GGGSHH
T ss_pred CcHHHHHHHHHHHHHHHHCCCCEEEEEecCccccccccccccccccccccchhhhhhhccccceEEEEEC----hHHhHH
Confidence 4689999999999999999999999999999999999988543334455555556677778999999999 789999
Q ss_pred HHHHhcCC
Q psy16967 230 VDVAAKNP 237 (282)
Q Consensus 230 AD~lAk~a 237 (282)
||.|||.|
T Consensus 77 A~~LA~~a 84 (87)
T PF13456_consen 77 ADALAKFA 84 (87)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999975
No 12
>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein. The domain is always associated with IPR000201 from INTERPRO and .; GO: 0004523 ribonuclease H activity
Probab=81.29 E-value=2.2 Score=36.42 Aligned_cols=90 Identities=22% Similarity=0.214 Sum_probs=50.2
Q ss_pred CceEEecCCCCCCCCceEEEEEcCCeeeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcCCCCc
Q psy16967 114 DRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNN 193 (282)
Q Consensus 114 ~~~~iyTDGS~~~~~~G~gvv~~~~~~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~~~~~~ 193 (282)
.--.||+|+.-. |+|+.+.++...+.....-.+..+||.|...|.-+.. .++ |.|||-.|+.. ....-
T Consensus 93 ~lc~VfaDATpT----gwgi~i~~~~~~~Tfs~~l~IhtaELlaaClAr~~~~----~r~-l~tDnt~Vlsr---kyts~ 160 (245)
T PF00336_consen 93 GLCQVFADATPT----GWGISITGQRMRGTFSKPLPIHTAELLAACLARLMSG----ARC-LGTDNTVVLSR---KYTSF 160 (245)
T ss_pred CCCceeccCCCC----cceeeecCceeeeeecccccchHHHHHHHHHHHhccC----CcE-EeecCcEEEec---ccccC
Confidence 345789998754 4443333333222222344789999999988876552 233 89999876532 12222
Q ss_pred h-HHHHHHHHHHHHHhCCCceEEEecCCc
Q psy16967 194 A-LLSKIYSTWLDLVACGKEISFMWCPSH 221 (282)
Q Consensus 194 ~-~~~~i~~~~~~l~~~~~~v~~~WVpgH 221 (282)
+ .....-+. +. ..+.|..||+-
T Consensus 161 PW~lac~A~w---iL---rgts~~yVPS~ 183 (245)
T PF00336_consen 161 PWLLACAANW---IL---RGTSFYYVPSK 183 (245)
T ss_pred cHHHHHHHHH---hh---cCceEEEeccc
Confidence 2 22222222 21 34788889964
No 13
>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family.
Probab=79.73 E-value=6.6 Score=32.13 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=31.8
Q ss_pred CceEEecCCCCCCCCceEE-EE-Ec--CCe-----eee-ec--CCCCchHHHHHHHHHHHHHHhhc
Q psy16967 114 DRILCFTDGSKTENSTSCA-YT-IN--KNV-----NSF-RL--NVVNSVFSAELMAILLCLQNLKY 167 (282)
Q Consensus 114 ~~~~iyTDGS~~~~~~G~g-vv-~~--~~~-----~~~-~l--~~~~s~~~AEl~AI~~AL~~~~~ 167 (282)
..+++|+|||.. +.|+. |+ .. +.. .+. ++ -...|+=.-||.|+..|.+++..
T Consensus 80 ~~L~~F~DAS~~--aygavvYlr~~~~~~~~~~ll~aKsrv~P~k~~tIPRlEL~a~~l~~~l~~~ 143 (159)
T PF05380_consen 80 VELHVFCDASES--AYGAVVYLRSYSDGSVQVRLLFAKSRVAPLKTVTIPRLELLAALLGVRLANT 143 (159)
T ss_pred eeeeEeeccccc--ceeeEeEeeeccCCceeeeeeeecccccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 468999999954 23333 22 11 121 111 12 13459999999999999888753
No 14
>KOG1812|consensus
Probab=71.54 E-value=13 Score=35.26 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=54.3
Q ss_pred CCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcCCCCch--HHHHHHHHHHHHHhCCCceEEEecCCcCCC
Q psy16967 147 VNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNA--LLSKIYSTWLDLVACGKEISFMWCPSHCGI 224 (282)
Q Consensus 147 ~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~~~~~~~--~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi 224 (282)
..+...||++|+..+|..+...+...+.+++|+......+.....+.- .+..+.+....++.......-.-||.-
T Consensus 46 ~~~~~~ae~~al~~~l~ea~~~~~~~~~~~~d~~~~~~~v~~~~~~~~~~~~~~l~~~v~~~r~~l~~~~~i~~~~~--- 122 (384)
T KOG1812|consen 46 SITPLEAELMALKRGLTEALELGLNHIVIYCDDELIYESVAGREKPEQHRKIVLLVELVQRIREQLTSSEPILVPKN--- 122 (384)
T ss_pred ccchhhHHHHHHhhccHHHHhhccccceEecccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhcccceecccc---
Confidence 368999999999999999999999999999997666665544433221 244445554444443322222223210
Q ss_pred cccHHHHHHhcCCC
Q psy16967 225 SGNEAVDVAAKNPS 238 (282)
Q Consensus 225 ~gNe~AD~lAk~a~ 238 (282)
.-..-|=.||+++.
T Consensus 123 ~d~~~~~~lA~e~i 136 (384)
T KOG1812|consen 123 ADIKFAYKLAREAI 136 (384)
T ss_pred hhhHHHHHHHHHhh
Confidence 01123556666665
No 15
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=54.80 E-value=17 Score=36.59 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHH
Q psy16967 196 LSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAV 230 (282)
Q Consensus 196 ~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~A 230 (282)
-..+...+..+.+.|..|-+-|||+|.+..||-.+
T Consensus 213 Pedfk~fVD~aH~~GIgViLD~V~~HF~~d~~~L~ 247 (628)
T COG0296 213 PEDFKALVDAAHQAGIGVILDWVPNHFPPDGNYLA 247 (628)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCcCCCCcchhh
Confidence 46777777779999999999999999999888754
No 16
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=48.40 E-value=41 Score=33.40 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEe-------CcHHHHHHHhcCCCCchHHHHHHHHHHHHHhCCCceEEEecCCcCCC
Q psy16967 154 ELMAILLCLQNLKYLPSTKFLLVT-------DSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGI 224 (282)
Q Consensus 154 El~AI~~AL~~~~~~~~~~i~I~s-------DS~~al~~l~~~~~~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi 224 (282)
.+.+|...|..+..++...|.+-- |+-+.+.-.......-|....+..++.++.++|..|-+-.|+-|++.
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s~ 108 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTST 108 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCccC
Confidence 578888889998888777666522 22111111111111112356778888889999999999999999976
No 17
>smart00642 Aamy Alpha-amylase domain.
Probab=41.07 E-value=89 Score=25.67 Aligned_cols=30 Identities=10% Similarity=-0.065 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhCCCceEEEecCCcCCC
Q psy16967 195 LLSKIYSTWLDLVACGKEISFMWCPSHCGI 224 (282)
Q Consensus 195 ~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi 224 (282)
-..++.+++.++.++|..|-+-.|+.|++.
T Consensus 68 t~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 68 TMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 457888888889999999999999999877
No 18
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=33.43 E-value=63 Score=29.91 Aligned_cols=34 Identities=24% Similarity=0.160 Sum_probs=26.0
Q ss_pred CCChHHHHHHHHHHHhhcC---CC-ceEEecCCCCCCC
Q psy16967 94 NVSPSVFQVQFLVNINTKY---HD-RILCFTDGSKTEN 127 (282)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~---~~-~~~iyTDGS~~~~ 127 (282)
....+.+.++|.+.++... .+ .+.|||.||..+.
T Consensus 78 ~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~ 115 (358)
T COG1244 78 PVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDP 115 (358)
T ss_pred CCCHHHHHHHHHHHHHHhcccCCCceEEEEcccccCCh
Confidence 3456778889999887644 44 5999999999863
No 19
>COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein [General function prediction only]
Probab=32.53 E-value=39 Score=29.30 Aligned_cols=87 Identities=17% Similarity=0.074 Sum_probs=58.4
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCeEEE-E----eCcHHHHHHHhcCCCCchHHHHHHHHHHHHHhC--CCceEEEecCC
Q psy16967 148 NSVFSAELMAILLCLQNLKYLPSTKFLL-V----TDSMSSLQAITSKSCNNALLSKIYSTWLDLVAC--GKEISFMWCPS 220 (282)
Q Consensus 148 ~s~~~AEl~AI~~AL~~~~~~~~~~i~I-~----sDS~~al~~l~~~~~~~~~~~~i~~~~~~l~~~--~~~v~~~WVpg 220 (282)
.++..+|.+|++.+|+.+...+.++..| + .||++...-+.+-.... +....+ .+.-.. +....+.|+--
T Consensus 106 ~~n~s~d~la~ly~~~~~~~~~nrk~~i~y~~~~~ds~a~~k~~k~~~~~k--~~~~~~--~e~~~~~~~v~h~~k~i~~ 181 (225)
T COG3341 106 KSNDSGDVLAKLYGLRYEVPLDNRKSVINYLTPGNDSWAYFKYVKDKCETK--VNLLKD--REFFSIGKGVFHDEKDINI 181 (225)
T ss_pred ccCchHHHHHHhccccccccccCccceeeccCCcchhHHHHHHHhhhhhhH--HHHHHh--HHhhhccchhhhhhhhccc
Confidence 4677899999999999887765555545 6 79998888776643111 000000 111122 24556788999
Q ss_pred cCCCcccHHHHHHhcCCC
Q psy16967 221 HCGISGNEAVDVAAKNPS 238 (282)
Q Consensus 221 H~gi~gNe~AD~lAk~a~ 238 (282)
|.++.-+..++.++..+.
T Consensus 182 ~~~~~~~~~~~s~~~~~~ 199 (225)
T COG3341 182 HIWIFESKKGNSHVYNTS 199 (225)
T ss_pred ccccchhhhhhhhhhchh
Confidence 999988888888887766
No 20
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=29.52 E-value=1.2e+02 Score=30.13 Aligned_cols=73 Identities=14% Similarity=0.020 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEe-------CcHHHHHHHhcCCCCchHHHHHHHHHHHHHhCCCceEEEecCCcCCCc
Q psy16967 153 AELMAILLCLQNLKYLPSTKFLLVT-------DSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGIS 225 (282)
Q Consensus 153 AEl~AI~~AL~~~~~~~~~~i~I~s-------DS~~al~~l~~~~~~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~ 225 (282)
+-+.+|..-|.++..++...|.+.- |+-+.+.-.......-|-...+..++.++.++|..|-+-+|+-|++..
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~~~ 103 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTSTE 103 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccccccc
Confidence 3467788888888887766665532 111211111111112234577888888899999999999999999754
No 21
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.06 E-value=3.8e+02 Score=23.83 Aligned_cols=87 Identities=14% Similarity=-0.078 Sum_probs=50.6
Q ss_pred EEEEEcCCe---eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcCCCCch----HHHHHHHHH
Q psy16967 131 CAYTINKNV---NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNA----LLSKIYSTW 203 (282)
Q Consensus 131 ~gvv~~~~~---~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~~~~~~~----~~~~i~~~~ 203 (282)
+|+|.|||. ..-+++....=+.+=..++...++++...+.+.+++|.=|. .|+..+.. +..-+.+.+
T Consensus 30 vAiImDGNrRwA~~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS~------eN~~R~~~Ev~~Lm~L~~~~l 103 (256)
T PRK14828 30 VGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLST------DNLGRPSEELNPLLDIIEDVV 103 (256)
T ss_pred EEEEecCChHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEh------hhcCCCHHHHHHHHHHHHHHH
Confidence 566778876 22233322134566777788888999999999999998874 45443322 222223333
Q ss_pred HHHHhCCCceEEEecCCcCCC
Q psy16967 204 LDLVACGKEISFMWCPSHCGI 224 (282)
Q Consensus 204 ~~l~~~~~~v~~~WVpgH~gi 224 (282)
..+. ....|.+++|-.....
T Consensus 104 ~~~~-~~~~irv~~iG~~~~l 123 (256)
T PRK14828 104 RQLA-PDGRWRVRHVGSLDLL 123 (256)
T ss_pred HHHH-HhCCeEEEEECChhhC
Confidence 3332 2356777776444333
No 22
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=24.03 E-value=1.7e+02 Score=29.07 Aligned_cols=73 Identities=15% Similarity=-0.002 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcC----------CCCchHHHHHHHHHHHHHhCCCceEEEecCCcC
Q psy16967 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK----------SCNNALLSKIYSTWLDLVACGKEISFMWCPSHC 222 (282)
Q Consensus 153 AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~~----------~~~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~ 222 (282)
+=+.||..-|.++.+++...|.+.-=.... .-.++ ...-|-...+.+++..+.++|..|-+-+|+.|+
T Consensus 108 G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~--~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~ 185 (542)
T TIGR02402 108 GTFDAAIEKLPYLADLGITAIELMPVAQFP--GTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHF 185 (542)
T ss_pred CCHHHHHHhhHHHHHcCCCEEEeCccccCC--CCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCC
Confidence 446778888999888877666543211000 00111 011123567888888899999999999999999
Q ss_pred CCccc
Q psy16967 223 GISGN 227 (282)
Q Consensus 223 gi~gN 227 (282)
|..++
T Consensus 186 ~~~~~ 190 (542)
T TIGR02402 186 GPEGN 190 (542)
T ss_pred CCccc
Confidence 87664
No 23
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=23.58 E-value=2.1e+02 Score=23.15 Aligned_cols=37 Identities=16% Similarity=0.059 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHH
Q psy16967 150 VFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAI 186 (282)
Q Consensus 150 ~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l 186 (282)
.-.||..||-.|.+.+........++|+--....++.
T Consensus 56 taHAEi~air~a~~~~~~~~l~~~tlyvT~EPC~MCa 92 (152)
T COG0590 56 TAHAEILAIRAAAETLGNYRLKDCTLYVTLEPCPMCA 92 (152)
T ss_pred cccHHHHHHHHHHHhhCCCCcCCcEEEEecCCHHHHH
Confidence 4479999999999998766667777777655444433
No 24
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=21.40 E-value=2.7e+02 Score=23.09 Aligned_cols=32 Identities=19% Similarity=-0.021 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHH
Q psy16967 150 VFSAELMAILLCLQNLKYLPSTKFLLVTDSMS 181 (282)
Q Consensus 150 ~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~ 181 (282)
...||..||..|.+.+........++|+--..
T Consensus 60 ~~HAEi~Ai~~a~~~~~~~~l~g~tlY~TlEP 91 (172)
T PRK10860 60 TAHAEIMALRQGGLVLQNYRLLDATLYVTLEP 91 (172)
T ss_pred ccCHHHHHHHHHHHhcCCCCcCCcEEEeeCCC
Confidence 45799999999887665444456677765443
No 25
>KOG2212|consensus
Probab=20.05 E-value=1.2e+02 Score=28.52 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccccccCCCCCCChHHHHHHHHHHHhhcCCCceEEecCCCCC
Q psy16967 62 DSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKT 125 (282)
Q Consensus 62 ~~e~i~p~~~~~pPW~~~~~~i~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~iyTDGS~~ 125 (282)
.+|.+.. +.+.-||=.|.+||...+..... +. ++|.++...-..-.+.||+|.=..
T Consensus 63 ~nEn~~~-~~~~rPWWeRYQPvSYKL~tRSG---NE----~eF~dMV~RCN~VGVRiyVDvv~N 118 (504)
T KOG2212|consen 63 PNENVAI-HNPFRPWWERYQPVSYKLCTRSG---NE----DEFRDMVTRCNNVGVRIYVDAVIN 118 (504)
T ss_pred cchhhhh-cCCCCCceeecccceEEeeccCC---CH----HHHHHHHHHhhccceEEEehhhhh
Confidence 4566533 22345554466666665543322 22 467777765456679999997543
Done!