Query psy16967
Match_columns 282
No_of_seqs 240 out of 1182
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 18:16:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 5.6E-25 1.9E-29 179.9 11.3 127 112-239 4-150 (154)
2 3qio_A GAG-POL polyprotein; RN 99.9 3.2E-24 1.1E-28 174.7 12.8 123 112-239 9-146 (150)
3 2kq2_A Ribonuclease H-related 99.9 1.5E-25 5E-30 182.1 4.3 126 112-241 3-138 (147)
4 3h08_A RNH (ribonuclease H); R 99.9 1.5E-24 5.1E-29 175.8 8.2 121 114-238 3-142 (146)
5 1jl1_A Ribonuclease HI; RNAse 99.9 2E-23 6.8E-28 171.0 9.9 121 115-239 4-142 (155)
6 2e4l_A Ribonuclease HI, RNAse 99.9 2.2E-23 7.4E-28 171.3 9.7 123 114-240 5-145 (158)
7 3p1g_A Xenotropic murine leuke 99.9 3.4E-23 1.2E-27 171.1 9.7 121 114-238 22-154 (165)
8 1ril_A Ribonuclease H; hydrola 99.9 2.4E-23 8.3E-28 172.4 6.5 122 114-239 7-147 (166)
9 2lsn_A Reverse transcriptase; 99.8 1.7E-21 5.9E-26 160.7 9.0 125 113-238 5-161 (165)
10 3u3g_D Ribonuclease H, RNAse H 99.8 7.2E-21 2.5E-25 152.0 9.4 119 115-238 3-135 (140)
11 3hst_B Protein RV2228C/MT2287; 99.8 1.6E-20 5.3E-25 150.5 10.7 119 115-238 3-131 (141)
12 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 6.8E-20 2.3E-24 178.2 12.6 117 113-238 434-555 (555)
13 2ehg_A Ribonuclease HI; RNAse 99.8 7.3E-20 2.5E-24 148.4 9.3 118 116-238 2-132 (149)
14 2zd1_A Reverse transcriptase/r 99.8 7.8E-20 2.7E-24 177.9 10.8 116 113-237 437-557 (557)
15 1zbf_A Ribonuclease H-related 99.4 9.9E-14 3.4E-18 111.4 4.2 116 112-231 8-138 (142)
16 4htu_A Ribonuclease H, RNAse H 99.2 1.8E-11 6E-16 96.8 8.0 75 113-189 3-83 (134)
17 1rw3_A POL polyprotein; RNA an 85.1 0.18 6.3E-06 47.0 0.2 72 114-189 345-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 59.2 8.5 0.00029 35.4 4.4 69 113-184 322-401 (428)
19 1ea9_C Cyclomaltodextrinase; h 36.6 27 0.00093 33.2 4.0 75 154-233 170-255 (583)
20 1ht6_A AMY1, alpha-amylase iso 30.8 30 0.001 31.2 3.1 72 155-226 20-98 (405)
21 3fxd_A Protein ICMQ; helix bun 30.7 1.1E+02 0.0037 19.7 5.0 36 154-208 9-44 (57)
22 1j0h_A Neopullulanase; beta-al 30.5 32 0.0011 32.8 3.4 75 154-233 174-259 (588)
23 1wzl_A Alpha-amylase II; pullu 30.4 30 0.001 32.9 3.2 70 154-228 171-251 (585)
24 4aef_A Neopullulanase (alpha-a 29.4 26 0.0009 33.8 2.6 76 153-232 236-321 (645)
25 4h8e_A Undecaprenyl pyrophosph 26.6 93 0.0032 26.5 5.2 79 131-218 28-117 (256)
26 1lwj_A 4-alpha-glucanotransfer 26.4 38 0.0013 30.8 3.0 68 155-227 22-100 (441)
27 2fr5_A Cytidine deaminase; tet 26.1 90 0.0031 24.1 4.7 53 127-180 36-92 (146)
28 1zja_A Trehalulose synthase; s 24.1 36 0.0012 32.2 2.4 71 155-225 31-108 (557)
29 1gcy_A Glucan 1,4-alpha-maltot 23.9 1.5E+02 0.0051 27.6 6.7 70 155-227 35-123 (527)
30 1m53_A Isomaltulose synthase; 23.6 32 0.0011 32.7 1.9 68 155-226 44-122 (570)
31 2z3g_A Blasticidin-S deaminase 23.5 1E+02 0.0035 23.2 4.5 51 128-179 28-80 (130)
32 2guy_A Alpha-amylase A; (beta- 21.9 46 0.0016 30.5 2.7 73 155-227 42-128 (478)
33 2wc7_A Alpha amylase, catalyti 21.4 40 0.0014 31.1 2.2 68 155-227 55-133 (488)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.92 E-value=5.6e-25 Score=179.94 Aligned_cols=127 Identities=24% Similarity=0.295 Sum_probs=97.8
Q ss_pred CCCceEEecCCCCCCCC-----ceEEEEEc-CCe--eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHH
Q psy16967 112 YHDRILCFTDGSKTENS-----TSCAYTIN-KNV--NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSL 183 (282)
Q Consensus 112 ~~~~~~iyTDGS~~~~~-----~G~gvv~~-~~~--~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al 183 (282)
..+.+.||||||+..++ +|+||++. ++. .+..+...+|++.|||.|++.||+.+...+..+|.|+|||++++
T Consensus 4 ~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi 83 (154)
T 2qkb_A 4 MGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTI 83 (154)
T ss_dssp ETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHH
T ss_pred CCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHH
Confidence 35679999999998643 68886653 322 45556557899999999999999999887789999999999999
Q ss_pred HHHhcC--------CC-Cch---HHHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCCC
Q psy16967 184 QAITSK--------SC-NNA---LLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSP 239 (282)
Q Consensus 184 ~~l~~~--------~~-~~~---~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~ 239 (282)
+.|..+ +. .++ ....+++.+..+.. +..|.|.|||||+|++||+.||+||++|+.
T Consensus 84 ~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~ 150 (154)
T 2qkb_A 84 NGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAK 150 (154)
T ss_dssp HHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHT
T ss_pred hhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHH
Confidence 999873 11 111 12344444444444 467999999999999999999999998863
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.91 E-value=3.2e-24 Score=174.70 Aligned_cols=123 Identities=24% Similarity=0.318 Sum_probs=92.7
Q ss_pred CCCceEEecCCCCCCCC--ceEEEEEcCCe-eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhc
Q psy16967 112 YHDRILCFTDGSKTENS--TSCAYTINKNV-NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS 188 (282)
Q Consensus 112 ~~~~~~iyTDGS~~~~~--~G~gvv~~~~~-~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~ 188 (282)
..+.+.||||||+..++ .|+|+++..+. ....+ ..+|++.||+.|++.||+.+ ..+|.|+|||++++++|..
T Consensus 9 ~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~~ 83 (150)
T 3qio_A 9 IVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIITQ 83 (150)
T ss_dssp CTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHHH
Confidence 46779999999997643 78887654433 33344 46899999999999999985 4899999999999999987
Q ss_pred CC---CCc------h--H-HHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCCC
Q psy16967 189 KS---CNN------A--L-LSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSP 239 (282)
Q Consensus 189 ~~---~~~------~--~-~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~ 239 (282)
+. ..+ + + -..+++.+..+...+..|.|.|||||+|++|||.||+||++|+.
T Consensus 84 w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~ 146 (150)
T 3qio_A 84 WIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIR 146 (150)
T ss_dssp HHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTS
T ss_pred HHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHH
Confidence 51 111 1 1 12333333333346789999999999999999999999999984
No 3
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.91 E-value=1.5e-25 Score=182.11 Aligned_cols=126 Identities=17% Similarity=0.092 Sum_probs=98.8
Q ss_pred CCCceEEecCCCCCCCCceEEEEE-cCCe---eee-ec--CC--CCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHH
Q psy16967 112 YHDRILCFTDGSKTENSTSCAYTI-NKNV---NSF-RL--NV--VNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSS 182 (282)
Q Consensus 112 ~~~~~~iyTDGS~~~~~~G~gvv~-~~~~---~~~-~l--~~--~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~a 182 (282)
+++.+.||||||+.++.+|+|+++ +.+. .+. .. +. .+|++.|||.|++.||+.+...+. +|.|+|||+.+
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i 81 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGI 81 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTH
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHH
Confidence 457799999999999669999654 3332 333 22 22 369999999999999998877666 99999999999
Q ss_pred HHHHhcCCCCc-hHHHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCCCCC
Q psy16967 183 LQAITSKSCNN-ALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPSF 241 (282)
Q Consensus 183 l~~l~~~~~~~-~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~~ 241 (282)
...+.+.+..+ +....+.+++++|.. .|.|.|||||+|++|||.||+||++|+...
T Consensus 82 ~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~ 138 (147)
T 2kq2_A 82 AFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIR 138 (147)
T ss_dssp HHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhcc
Confidence 88888766544 355666666665543 899999999999999999999999998433
No 4
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.91 E-value=1.5e-24 Score=175.77 Aligned_cols=121 Identities=20% Similarity=0.150 Sum_probs=89.0
Q ss_pred CceEEecCCCCCCCC--ceEEEE-EcCCe---eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHh
Q psy16967 114 DRILCFTDGSKTENS--TSCAYT-INKNV---NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAIT 187 (282)
Q Consensus 114 ~~~~iyTDGS~~~~~--~G~gvv-~~~~~---~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~ 187 (282)
..++||||||+..++ +|+|++ .+++. .+..+ ..+|++.|||.|++.||+.+.. ..+|.|+|||+++++.|.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 468999999998754 788855 34433 22333 3579999999999999999876 589999999999999998
Q ss_pred cCC---------C-Cch---HHHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCC
Q psy16967 188 SKS---------C-NNA---LLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238 (282)
Q Consensus 188 ~~~---------~-~~~---~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~ 238 (282)
..+ . .++ ....+++.+..+... ..|.|.|||||+|++|||.||+|||+|+
T Consensus 80 ~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~-~~v~~~~V~gH~g~~~N~~AD~LA~~a~ 142 (146)
T 3h08_A 80 EGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL-HRVTFHKVKGHSDNPYNSRADELARLAI 142 (146)
T ss_dssp SSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH-SEEEEEECCC-CCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh-CceEEEEcCCcCCcHhHHHHHHHHHHHH
Confidence 721 1 111 113333333333332 4699999999999999999999999886
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.89 E-value=2e-23 Score=170.95 Aligned_cols=121 Identities=23% Similarity=0.266 Sum_probs=91.6
Q ss_pred ceEEecCCCCCCCC--ceEEEEE-cCCe---eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhc
Q psy16967 115 RILCFTDGSKTENS--TSCAYTI-NKNV---NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS 188 (282)
Q Consensus 115 ~~~iyTDGS~~~~~--~G~gvv~-~~~~---~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~ 188 (282)
.+.||||||+..++ +|+|+++ +.+. .+..+ ..+|++.|||.|++.||+.+.. ..+|.|+|||+++++.|..
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~~ 80 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGITQ 80 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHHT
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHHH
Confidence 58999999998653 7888654 3332 33333 3568999999999999999875 3899999999999999987
Q ss_pred C--------CC-Cc--hH-HHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCCC
Q psy16967 189 K--------SC-NN--AL-LSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSP 239 (282)
Q Consensus 189 ~--------~~-~~--~~-~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~ 239 (282)
+ +. .+ ++ ...+++.+..+.. ...|.|.|||||+|++||+.||+||++|+.
T Consensus 81 w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~ 142 (155)
T 1jl1_A 81 WIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAM 142 (155)
T ss_dssp THHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccCCccCCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 2 21 11 11 1344444444544 368999999999999999999999999983
No 6
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.89 E-value=2.2e-23 Score=171.28 Aligned_cols=123 Identities=24% Similarity=0.289 Sum_probs=91.9
Q ss_pred CceEEecCCCCCCCC--ceEEEEE-cCCe---eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHh
Q psy16967 114 DRILCFTDGSKTENS--TSCAYTI-NKNV---NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAIT 187 (282)
Q Consensus 114 ~~~~iyTDGS~~~~~--~G~gvv~-~~~~---~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~ 187 (282)
..+.||||||+..++ +|+|+++ +++. .+..+ ..+|++.|||.|++.||+.+.. ..+|.|+|||+++++.|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHH
Confidence 458999999998643 7888654 3333 23333 3578999999999999999865 389999999999999998
Q ss_pred c--------CCCC-c--hH-HHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCCCC
Q psy16967 188 S--------KSCN-N--AL-LSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSPS 240 (282)
Q Consensus 188 ~--------~~~~-~--~~-~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~~ 240 (282)
. .+.. . ++ -..+++.+..+.. ...|.|.|||||+|++||+.||+||++|+..
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 8 2221 1 11 1334444444444 3689999999999999999999999999843
No 7
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.89 E-value=3.4e-23 Score=171.12 Aligned_cols=121 Identities=22% Similarity=0.218 Sum_probs=89.3
Q ss_pred CceEEecCCCCCC--CCceEEEE-EcCCe--eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhc
Q psy16967 114 DRILCFTDGSKTE--NSTSCAYT-INKNV--NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS 188 (282)
Q Consensus 114 ~~~~iyTDGS~~~--~~~G~gvv-~~~~~--~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~ 188 (282)
..+.||||||+.. |..|+|++ ..++. ....+...+|++.||+.|++.||+.+ ...++.|+|||+++++.+-.
T Consensus 22 ~~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~ 98 (165)
T 3p1g_A 22 ADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHV 98 (165)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHS
T ss_pred CCEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhc
Confidence 4589999999984 33788864 34333 22245567899999999999999998 36899999999999999832
Q ss_pred CCCCchH-HHHHHH-HHHHHHhCCCceEEEecCCcCC-----CcccHHHHHHhcCCC
Q psy16967 189 KSCNNAL-LSKIYS-TWLDLVACGKEISFMWCPSHCG-----ISGNEAVDVAAKNPS 238 (282)
Q Consensus 189 ~~~~~~~-~~~i~~-~~~~l~~~~~~v~~~WVpgH~g-----i~gNe~AD~lAk~a~ 238 (282)
.....++ -..+++ ++..+ ..+..|.|+|||||+| ++|||.||+||++|+
T Consensus 99 ~~~g~~v~n~dl~~~l~~~l-~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa 154 (165)
T 3p1g_A 99 HSEGREIKNKNEILALLKAL-FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAA 154 (165)
T ss_dssp CCCSCCCSSHHHHHHHHHHT-TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccCHHHHHHHHHHH-hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHH
Confidence 1111221 122222 22223 3578999999999999 999999999999988
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.88 E-value=2.4e-23 Score=172.35 Aligned_cols=122 Identities=25% Similarity=0.206 Sum_probs=91.8
Q ss_pred CceEEecCCCCCCCC--ceEEEEE-cCCe---eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHh
Q psy16967 114 DRILCFTDGSKTENS--TSCAYTI-NKNV---NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAIT 187 (282)
Q Consensus 114 ~~~~iyTDGS~~~~~--~G~gvv~-~~~~---~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~ 187 (282)
..+.||||||+..++ +|+|+++ +.+. .+... ..+|++.|||.|++.||+.+... .+|.|+|||+++++.|.
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~ 83 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFT 83 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHh
Confidence 568999999998753 7888664 3332 22222 35789999999999999988653 58999999999999998
Q ss_pred c----------CCCCch--H-HHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCCC
Q psy16967 188 S----------KSCNNA--L-LSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPSP 239 (282)
Q Consensus 188 ~----------~~~~~~--~-~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~~ 239 (282)
. +...++ + ...+++.+..+... ..|.|.|||||+|++||+.||+||++|+.
T Consensus 84 ~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~ 147 (166)
T 1ril_A 84 EGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP-HRVRFHFVKGHTGHPENERVDREARRQAQ 147 (166)
T ss_dssp SSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTT-SEEECCCCCGGGSCTHHHHHHHHHHHHHT
T ss_pred hhHHHHHHhcccccccCCccCcHHHHHHHHHHHhc-CeEEEEEeeCCCCchhHHHHHHHHHHHHH
Confidence 8 222221 1 13344444444443 58999999999999999999999999984
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.85 E-value=1.7e-21 Score=160.73 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=88.4
Q ss_pred CCceEEecCCCCCCC--C-----ceEEEEE-cC-Ce----eeeec-CCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeC
Q psy16967 113 HDRILCFTDGSKTEN--S-----TSCAYTI-NK-NV----NSFRL-NVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTD 178 (282)
Q Consensus 113 ~~~~~iyTDGS~~~~--~-----~G~gvv~-~~-~~----~~~~l-~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sD 178 (282)
.-.++||||||+..+ + .|+||++ .. .. ..+.. ....+++.||+.|+..||+.+... ..+|.|+||
T Consensus 5 ~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~-~~~v~I~TD 83 (165)
T 2lsn_A 5 QYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI-PGPVLVITD 83 (165)
T ss_dssp CCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS-SSCEEEEES
T ss_pred CceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEeC
Confidence 345899999999764 2 6888654 22 21 22233 356789999999999999887664 357999999
Q ss_pred cHHHHHHHhcC--------CCC-c--hH-HHHHHHHHHHHHhCCCceEEEecCCcCCC------cccHHHHHHhcCCC
Q psy16967 179 SMSSLQAITSK--------SCN-N--AL-LSKIYSTWLDLVACGKEISFMWCPSHCGI------SGNEAVDVAAKNPS 238 (282)
Q Consensus 179 S~~al~~l~~~--------~~~-~--~~-~~~i~~~~~~l~~~~~~v~~~WVpgH~gi------~gNe~AD~lAk~a~ 238 (282)
|++++++|..+ +.. . ++ -..+++.+.++......|.|.|||||+|+ +|||.||+||++|+
T Consensus 84 S~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA 161 (165)
T 2lsn_A 84 SFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGS 161 (165)
T ss_dssp CHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhh
Confidence 99999999753 111 1 11 13344444444444568999999999994 68999999999875
No 10
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.84 E-value=7.2e-21 Score=151.98 Aligned_cols=119 Identities=16% Similarity=0.220 Sum_probs=91.9
Q ss_pred ceEEecCCCCCCC--CceEEEEE-cCC--e---eeeecCCCCchHHHHHHHHHHHHHHhhcCCCC----eEEEEeCcHHH
Q psy16967 115 RILCFTDGSKTEN--STSCAYTI-NKN--V---NSFRLNVVNSVFSAELMAILLCLQNLKYLPST----KFLLVTDSMSS 182 (282)
Q Consensus 115 ~~~iyTDGS~~~~--~~G~gvv~-~~~--~---~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~----~i~I~sDS~~a 182 (282)
.+.||||||+..+ .+|+|+++ +.+ . .+..+ ..+|++.||+.|++.||+.+...+.. +|.|+|||+++
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~v 81 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELI 81 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHH
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHH
Confidence 5899999999865 37888654 422 2 22223 34799999999999999999887767 99999999999
Q ss_pred HHHHhcCCC-CchHHHHHHHHHHHH-HhCCCceEEEecCCcCCCcccHHHHHHhcCCC
Q psy16967 183 LQAITSKSC-NNALLSKIYSTWLDL-VACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238 (282)
Q Consensus 183 l~~l~~~~~-~~~~~~~i~~~~~~l-~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~ 238 (282)
++.+.+.+. .+.-...+++.+..+ ......|.|.||| .++|+.||+||++|+
T Consensus 82 i~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~----~~~N~~AD~LA~~a~ 135 (140)
T 3u3g_D 82 VRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIP----REKNARADELVNEAI 135 (140)
T ss_dssp HHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECC----GGGGHHHHHHHHHHH
T ss_pred HHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcC----chhhHHHHHHHHHHH
Confidence 999999764 344344455555555 5666799999999 489999999999875
No 11
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.83 E-value=1.6e-20 Score=150.52 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=95.3
Q ss_pred ceEEecCCCCCCC--CceEEEE-EcCC---e---eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHH
Q psy16967 115 RILCFTDGSKTEN--STSCAYT-INKN---V---NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQA 185 (282)
Q Consensus 115 ~~~iyTDGS~~~~--~~G~gvv-~~~~---~---~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~ 185 (282)
.++||||||+..+ .+|+|++ .+.+ . .+..+ ..+|++.||+.|++.||+.+...+..+|.|+|||+++++.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 4799999999865 3788855 3432 2 22223 3679999999999999999988888999999999999999
Q ss_pred HhcCCC-CchHHHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCC
Q psy16967 186 ITSKSC-NNALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238 (282)
Q Consensus 186 l~~~~~-~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~ 238 (282)
+.+.+. .+.....+++.+..+...+..|.|.|||+ ++|+.||+||++|+
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~ 131 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAM 131 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHH
T ss_pred HhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHH
Confidence 998653 44445566666667777788999999994 89999999999887
No 12
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.81 E-value=6.8e-20 Score=178.24 Aligned_cols=117 Identities=23% Similarity=0.369 Sum_probs=92.2
Q ss_pred CCceEEecCCCCCCCC--ceEEEEEcC-CeeeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcC
Q psy16967 113 HDRILCFTDGSKTENS--TSCAYTINK-NVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK 189 (282)
Q Consensus 113 ~~~~~iyTDGS~~~~~--~G~gvv~~~-~~~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~~ 189 (282)
.+.+.||||||+..++ +|+|+++.. +.....+ ..+||+.||+.|++.||+. ...++.|+|||++|+++++++
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~ 508 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQ 508 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTC
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhcc
Confidence 4569999999998654 788876543 3333333 4679999999999999998 468999999999999999986
Q ss_pred CCC--chHHHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCC
Q psy16967 190 SCN--NALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238 (282)
Q Consensus 190 ~~~--~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~ 238 (282)
... .++..++.+. +. .+..|.|.|||||+|++|||.||+||++|+
T Consensus 509 ~~~~~~~l~~~~~~~---~~-~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 509 PTESESKIVNQIIEE---MI-KKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CSEESCHHHHHHHHH---HH-HCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHH---hc-cCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 533 2355544443 33 357899999999999999999999999985
No 13
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.81 E-value=7.3e-20 Score=148.43 Aligned_cols=118 Identities=13% Similarity=0.220 Sum_probs=89.0
Q ss_pred eEEecCCCCC-C--CCceE-EEE-EcCCe--eee--ecC---CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHH
Q psy16967 116 ILCFTDGSKT-E--NSTSC-AYT-INKNV--NSF--RLN---VVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSL 183 (282)
Q Consensus 116 ~~iyTDGS~~-~--~~~G~-gvv-~~~~~--~~~--~l~---~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al 183 (282)
+.||||||+. . +.+|+ |++ .+.+. ..+ .++ ..+|++.||+.|++.||+.+...+..+|.|+|||++++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 6899999998 3 44785 854 44322 222 222 37899999999999999999887888999999999999
Q ss_pred HHHhcCCCC-chHHHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCCC
Q psy16967 184 QAITSKSCN-NALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNPS 238 (282)
Q Consensus 184 ~~l~~~~~~-~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a~ 238 (282)
+.+.+++.. ++....+.+.+..+.... .|.|.|||+ ++|+.||+||++|+
T Consensus 82 ~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~ 132 (149)
T 2ehg_A 82 KQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAY 132 (149)
T ss_dssp HHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHH
T ss_pred HHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHH
Confidence 999998653 233344444444444433 599999998 59999999999988
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.80 E-value=7.8e-20 Score=177.92 Aligned_cols=116 Identities=28% Similarity=0.415 Sum_probs=89.5
Q ss_pred CCceEEecCCCCCCCC--ceEEEEEcCCe-eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcC
Q psy16967 113 HDRILCFTDGSKTENS--TSCAYTINKNV-NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK 189 (282)
Q Consensus 113 ~~~~~iyTDGS~~~~~--~G~gvv~~~~~-~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~~ 189 (282)
.+.+.||||||+..++ +|+|+++..+. ..... ..+||+.||+.|++.||+.+ ..++.|+|||++|++++.++
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~ 511 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQ 511 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTC
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcC
Confidence 4569999999997643 78887655333 33333 46799999999999999998 57999999999999999997
Q ss_pred CCCc--hHHHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHHHHhcCC
Q psy16967 190 SCNN--ALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVDVAAKNP 237 (282)
Q Consensus 190 ~~~~--~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD~lAk~a 237 (282)
...+ ++..++.+. +.. ...|.|.|||||+|++|||.||+||++|
T Consensus 512 ~~~~~~~l~~~~~~~---l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 512 PDKSESELVNQIIEQ---LIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CSEESSHHHHHHHHH---HHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred CccCCHHHHHHHHHH---Hhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 6542 355554443 433 4689999999999999999999999986
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.41 E-value=9.9e-14 Score=111.38 Aligned_cols=116 Identities=14% Similarity=-0.006 Sum_probs=81.8
Q ss_pred CCCceEEecCCCCCCC--CceEEEEEcC--Ce--eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHH
Q psy16967 112 YHDRILCFTDGSKTEN--STSCAYTINK--NV--NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQA 185 (282)
Q Consensus 112 ~~~~~~iyTDGS~~~~--~~G~gvv~~~--~~--~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~ 185 (282)
..+.+.||||||+..+ .+|+|+++.. .. .+..++ .+|++.||++|++.||+.+...+. ++.|+|||+++++.
T Consensus 8 ~~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w 85 (142)
T 1zbf_A 8 EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKW 85 (142)
T ss_dssp CCCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHH
T ss_pred CCCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHH
Confidence 3567899999999864 3788866532 22 222232 578999999999999999988766 99999999999999
Q ss_pred HhcCCCC-c--------hHHHHHHHHHHHHHhCCCceEEEecCCcCCCcccHHHH
Q psy16967 186 ITSKSCN-N--------ALLSKIYSTWLDLVACGKEISFMWCPSHCGISGNEAVD 231 (282)
Q Consensus 186 l~~~~~~-~--------~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~gNe~AD 231 (282)
+.+.+.. + .+.+.|..+..-+..+ .+....|.-|++.-||..||
T Consensus 86 ~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~--~~~~~~~kw~~~~~ge~pad 138 (142)
T 1zbf_A 86 VKDKKAKSTLVRNEETALIWKLVDEAEEWLNTH--TYETPILKWQTDKWGEIKAD 138 (142)
T ss_dssp HHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHC--CCCCCEEECCHHHHCSCTTC
T ss_pred HHcCCccCCCCCCcccHHHHHHHHHHHHHHhhC--CCceeEEEeccCccCcCccc
Confidence 9987632 1 1334444443334444 34555566688788888887
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.24 E-value=1.8e-11 Score=96.80 Aligned_cols=75 Identities=15% Similarity=0.059 Sum_probs=58.2
Q ss_pred CCceEEecCCCCCCCC--ceEE-EEEcCCe---eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHH
Q psy16967 113 HDRILCFTDGSKTENS--TSCA-YTINKNV---NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAI 186 (282)
Q Consensus 113 ~~~~~iyTDGS~~~~~--~G~g-vv~~~~~---~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l 186 (282)
+....||||||+..+. .|+| |+...+. .+..+ ..+||+.||++|++.||+.+.+.+.. +.|+|||++|+..+
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi 80 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWV 80 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHH
Confidence 5667899999998754 7885 5544322 22233 36799999999999999999876544 89999999999999
Q ss_pred hcC
Q psy16967 187 TSK 189 (282)
Q Consensus 187 ~~~ 189 (282)
.+.
T Consensus 81 ~~~ 83 (134)
T 4htu_A 81 KDK 83 (134)
T ss_dssp HHT
T ss_pred HcC
Confidence 875
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=85.06 E-value=0.18 Score=47.02 Aligned_cols=72 Identities=11% Similarity=-0.005 Sum_probs=47.1
Q ss_pred CceEEecCCCCCCCCceEEEEEcC---Ce-----eeeec---CCCCchHHHHHHHHHHHHHHhhcC-CCCeEEEEeCcHH
Q psy16967 114 DRILCFTDGSKTENSTSCAYTINK---NV-----NSFRL---NVVNSVFSAELMAILLCLQNLKYL-PSTKFLLVTDSMS 181 (282)
Q Consensus 114 ~~~~iyTDGS~~~~~~G~gvv~~~---~~-----~~~~l---~~~~s~~~AEl~AI~~AL~~~~~~-~~~~i~I~sDS~~ 181 (282)
..+.+|||+|.. ++| ||.... .. .+..+ ....+++..|+.||..|++..... ....++|+||+.
T Consensus 345 ~~~~l~~DAS~~--~~g-avL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~- 420 (455)
T 1rw3_A 345 KPFELFVDEKQG--YAK-GVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA- 420 (455)
T ss_dssp CTTSCEEEEEEC--SSS-BEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-
T ss_pred CcEEEEEeccCC--cce-eEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-
Confidence 447899999853 333 344321 11 22233 234578899999999999877543 457999999996
Q ss_pred HHHHHhcC
Q psy16967 182 SLQAITSK 189 (282)
Q Consensus 182 al~~l~~~ 189 (282)
++..+.+.
T Consensus 421 ~~~~l~~~ 428 (455)
T 1rw3_A 421 VEALVKQP 428 (455)
T ss_dssp TTTTSSST
T ss_pred HHHHhCCC
Confidence 66555554
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=59.20 E-value=8.5 Score=35.41 Aligned_cols=69 Identities=1% Similarity=-0.097 Sum_probs=40.5
Q ss_pred CCceEEecCCCCCCCCceEE-EEEcCC-e--eeeec--CCCCchHHHHHHH-HHHHHHHhhcC----CCCeEEEEeCcHH
Q psy16967 113 HDRILCFTDGSKTENSTSCA-YTINKN-V--NSFRL--NVVNSVFSAELMA-ILLCLQNLKYL----PSTKFLLVTDSMS 181 (282)
Q Consensus 113 ~~~~~iyTDGS~~~~~~G~g-vv~~~~-~--~~~~l--~~~~s~~~AEl~A-I~~AL~~~~~~----~~~~i~I~sDS~~ 181 (282)
...+.++||+|.. | ++| |+.+++ . .+.++ ......+.-|+.| +..||+..... ....++++||++.
T Consensus 322 ~~~~~l~~das~~--g-~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~ 398 (428)
T 2zd1_B 322 SKDLIAEIQKQGQ--G-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW 398 (428)
T ss_dssp TSCCEEEEEEEET--T-EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHH
T ss_pred CCCEEEEEecCCC--C-cEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHH
Confidence 3447999999943 2 335 344433 2 33333 2333455566666 99999865432 2456788899986
Q ss_pred HHH
Q psy16967 182 SLQ 184 (282)
Q Consensus 182 al~ 184 (282)
...
T Consensus 399 ~~~ 401 (428)
T 2zd1_B 399 ETW 401 (428)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 19
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=36.64 E-value=27 Score=33.25 Aligned_cols=75 Identities=15% Similarity=0.033 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEe--CcHHHHHHHhcCCC---------CchHHHHHHHHHHHHHhCCCceEEEecCCcC
Q psy16967 154 ELMAILLCLQNLKYLPSTKFLLVT--DSMSSLQAITSKSC---------NNALLSKIYSTWLDLVACGKEISFMWCPSHC 222 (282)
Q Consensus 154 El~AI~~AL~~~~~~~~~~i~I~s--DS~~al~~l~~~~~---------~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~ 222 (282)
-+.+|...|.++..++...|.+.- ++.+ ..... .-|-...+.++++++.++|..|-+-||+.|+
T Consensus 170 d~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~ 244 (583)
T 1ea9_C 170 DLQGVIDHLDHLSKLGVNAVYFTPLFKATT-----NHKYDTEDYFQIDPQFGDKDTLKKLVDLCHERGIRVLLDAVFNHS 244 (583)
T ss_dssp CHHHHHHTHHHHHHHTCSEEEECCCSSCSS-----SSTTSCSCTTCCCTTTCCHHHHHHHHHHHTTTTCEEEEECCCSBC
T ss_pred CHHHHHHhhHHHHHcCCCEEEECCCccCCC-----CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEccccC
Confidence 367788888999888877776651 2110 11111 1124678888888899999999999999999
Q ss_pred CCcccHHHHHH
Q psy16967 223 GISGNEAVDVA 233 (282)
Q Consensus 223 gi~gNe~AD~l 233 (282)
+....---|.+
T Consensus 245 ~~~~~~f~~~~ 255 (583)
T 1ea9_C 245 GRTFPPFVDVL 255 (583)
T ss_dssp CTTTHHHHHHH
T ss_pred CCccHHHHHHH
Confidence 97654333333
No 20
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=30.83 E-value=30 Score=31.16 Aligned_cols=72 Identities=8% Similarity=-0.091 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhcCCCCeEEEE------eCcHHHHHHHhcCC-CCchHHHHHHHHHHHHHhCCCceEEEecCCcCCCcc
Q psy16967 155 LMAILLCLQNLKYLPSTKFLLV------TDSMSSLQAITSKS-CNNALLSKIYSTWLDLVACGKEISFMWCPSHCGISG 226 (282)
Q Consensus 155 l~AI~~AL~~~~~~~~~~i~I~------sDS~~al~~l~~~~-~~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~g 226 (282)
+.+|...|..+..++...|.|. ++.-+...-..... ..-|-...+.+++.++.++|..|-+-+|+.|++...
T Consensus 20 ~~gi~~~ldyl~~lGv~~i~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~~ 98 (405)
T 1ht6_A 20 YNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADY 98 (405)
T ss_dssp HHHHHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCCSE
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCccccccCCCccCCCHHHHHHHHHHHHHCCCEEEEEECcCcccCCC
Confidence 5677777888888777766654 11111100000001 112346778888888999999999999999998754
No 21
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=30.75 E-value=1.1e+02 Score=19.68 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcCCCCchHHHHHHHHHHHHHh
Q psy16967 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVA 208 (282)
Q Consensus 154 El~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~~~~~~~~~~~i~~~~~~l~~ 208 (282)
...||+.||..+.. .+||..|.+.+-|-+-+.+++.
T Consensus 9 q~~aILkaLdeaIe-------------------~GPWe~SNFLRvIGKnL~eIRd 44 (57)
T 3fxd_A 9 QKETILKALNDAIE-------------------KGPWDKSNFLRVIGKKLIAIRD 44 (57)
T ss_dssp HHHHHHHHHHHHHH-------------------HSCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------------cCCchHHHHHHHHHHhHHHHHH
Confidence 35688999988765 5678888777777666666654
No 22
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=30.46 E-value=32 Score=32.79 Aligned_cols=75 Identities=21% Similarity=0.063 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEE--eCcHHHHHHHhcCCCC---------chHHHHHHHHHHHHHhCCCceEEEecCCcC
Q psy16967 154 ELMAILLCLQNLKYLPSTKFLLV--TDSMSSLQAITSKSCN---------NALLSKIYSTWLDLVACGKEISFMWCPSHC 222 (282)
Q Consensus 154 El~AI~~AL~~~~~~~~~~i~I~--sDS~~al~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~ 222 (282)
-+.+|...|.++..++...|.+. .++.+ ...... -|-...+.++++++.++|..|-+-||+.|+
T Consensus 174 ~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~ 248 (588)
T 1j0h_A 174 DLQGIIDHLDYLVDLGITGIYLTPIFRSPS-----NHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVFNHC 248 (588)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcccCCC-----CCCcCccccCccCccCCCHHHHHHHHHHHHHCCCEEEEEECcCcC
Confidence 46788888999988887776654 11110 111111 123678888888899999999999999999
Q ss_pred CCcccHHHHHH
Q psy16967 223 GISGNEAVDVA 233 (282)
Q Consensus 223 gi~gNe~AD~l 233 (282)
+.....-.|.+
T Consensus 249 ~~~~~~f~~~~ 259 (588)
T 1j0h_A 249 GYEFAPFQDVW 259 (588)
T ss_dssp CTTCHHHHHHH
T ss_pred cccchhHHHHH
Confidence 97665444433
No 23
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=30.40 E-value=30 Score=32.92 Aligned_cols=70 Identities=19% Similarity=0.016 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEE--eCcHHHHHHHhcCCCC---------chHHHHHHHHHHHHHhCCCceEEEecCCcC
Q psy16967 154 ELMAILLCLQNLKYLPSTKFLLV--TDSMSSLQAITSKSCN---------NALLSKIYSTWLDLVACGKEISFMWCPSHC 222 (282)
Q Consensus 154 El~AI~~AL~~~~~~~~~~i~I~--sDS~~al~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~ 222 (282)
-+.+|...|.++..++...|.+. .++.+ ...... -|....+.++++++.++|..|-+-||+.|+
T Consensus 171 ~~~gi~~~LdyLk~LGvt~I~L~Pi~~~~~-----~~GYd~~dy~~id~~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~ 245 (585)
T 1wzl_A 171 DLKGVIDRLPYLEELGVTALYFTPIFASPS-----HHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFNHA 245 (585)
T ss_dssp CHHHHHHTHHHHHHHTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCSBC
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCcccCCC-----CCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEcCCcC
Confidence 36778888888888877766654 11110 111111 124678888888899999999999999999
Q ss_pred CCcccH
Q psy16967 223 GISGNE 228 (282)
Q Consensus 223 gi~gNe 228 (282)
+....-
T Consensus 246 ~~~~~~ 251 (585)
T 1wzl_A 246 GDQFFA 251 (585)
T ss_dssp CTTSHH
T ss_pred CCccHH
Confidence 976543
No 24
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=29.43 E-value=26 Score=33.78 Aligned_cols=76 Identities=13% Similarity=-0.032 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhc-CCC---------CchHHHHHHHHHHHHHhCCCceEEEecCCcC
Q psy16967 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-KSC---------NNALLSKIYSTWLDLVACGKEISFMWCPSHC 222 (282)
Q Consensus 153 AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~-~~~---------~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~ 222 (282)
+=+.||..-|.++..++...|.|.-=.. +..+ ... .-|-...+.+++.++.++|..|-+=+|+.|+
T Consensus 236 Gdl~Gi~~kLdYLk~LGvt~I~L~Pif~----s~~~~GYd~~dy~~idp~~Gt~~df~~LV~~aH~~GI~VIlD~V~NHt 311 (645)
T 4aef_A 236 GDLIGIKEKIDHLVNLGINAIYLTPIFS----SLTYHGYDIVDYFHVARRLGGDRAFVDLLSELKRFDIKVILDGVFHHT 311 (645)
T ss_dssp CCHHHHHHTHHHHHHHTCCEEEECCCEE----ESSTTCSSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEECCSBC
T ss_pred cCHHHHHHhhHHHHHcCCCEEEECCCCC----CCCCCCcCccCCCccCcccCCHHHHHHHHHHhhhcCCEEEEEeccccc
Confidence 4478899999999988877666531000 0011 111 1123577888888899999999999999999
Q ss_pred CCcccHHHHH
Q psy16967 223 GISGNEAVDV 232 (282)
Q Consensus 223 gi~gNe~AD~ 232 (282)
|....-.-|.
T Consensus 312 s~~h~wf~~~ 321 (645)
T 4aef_A 312 SFFHPYFQDV 321 (645)
T ss_dssp CTTSHHHHHH
T ss_pred ccCCchhhhH
Confidence 8765443333
No 25
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=26.59 E-value=93 Score=26.52 Aligned_cols=79 Identities=9% Similarity=-0.029 Sum_probs=49.1
Q ss_pred EEEEEcCCe---eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcHHHHHHHhcCCCCch----HH----HHH
Q psy16967 131 CAYTINKNV---NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSKSCNNA----LL----SKI 199 (282)
Q Consensus 131 ~gvv~~~~~---~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~~al~~l~~~~~~~~----~~----~~i 199 (282)
+|++.|||. ...+++ ...=+.+-..++...++++.+.+.+.+++|.-|. .|+..+.. +. ..+
T Consensus 28 VAiIMDGN~RwAk~rgl~-r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFSt------ENwkRp~~EV~~Lm~L~~~~l 100 (256)
T 4h8e_A 28 IAIIMDGNGRWAKKRKMP-RIKGHYEGMQTIKKITRIASDIGVKYLTLYAFST------ENWSRPESEVNYIMNLPVNFL 100 (256)
T ss_dssp EEEECCCHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEET------TGGGSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEch------hhhCCCHHHHHHHHHHHHHHH
Confidence 556777766 222342 2345667777888889999989999999999984 56544322 11 222
Q ss_pred HHHHHHHHhCCCceEEEec
Q psy16967 200 YSTWLDLVACGKEISFMWC 218 (282)
Q Consensus 200 ~~~~~~l~~~~~~v~~~WV 218 (282)
.+.+..+...+ |.+++|
T Consensus 101 ~~~~~~l~~~~--vrvr~i 117 (256)
T 4h8e_A 101 KTFLPELIEKN--VKVETI 117 (256)
T ss_dssp HHHHHHHHHTT--CEEEEE
T ss_pred HHHHHHHHHcC--eEEEEe
Confidence 23334455544 667666
No 26
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=26.44 E-value=38 Score=30.80 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEe--CcHHHHHHHhcCCC---------CchHHHHHHHHHHHHHhCCCceEEEecCCcCC
Q psy16967 155 LMAILLCLQNLKYLPSTKFLLVT--DSMSSLQAITSKSC---------NNALLSKIYSTWLDLVACGKEISFMWCPSHCG 223 (282)
Q Consensus 155 l~AI~~AL~~~~~~~~~~i~I~s--DS~~al~~l~~~~~---------~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~g 223 (282)
+.+|..-|.++..++...|.+.- .+.+ ..+.. .-|-...+.+++.++.++|..|-+=+|+.|++
T Consensus 22 ~~gi~~~LdyL~~LGv~~I~L~Pi~~~~~-----~~GY~~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~ 96 (441)
T 1lwj_A 22 FRGLKNAVSYLKELGIDFVWLMPVFSSIS-----FHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIKVVLDLPIHHTG 96 (441)
T ss_dssp HHHHHHTHHHHHHTTCCEEEECCCEECSS-----SSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTBCC
T ss_pred HHHHHHhhHHHHHcCCCEEEeCCCcCCCC-----CCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCccc
Confidence 56777778888887776665421 1110 01111 11346788888888999999999999999999
Q ss_pred Cccc
Q psy16967 224 ISGN 227 (282)
Q Consensus 224 i~gN 227 (282)
....
T Consensus 97 ~~~~ 100 (441)
T 1lwj_A 97 FLHT 100 (441)
T ss_dssp TTCH
T ss_pred CchH
Confidence 8654
No 27
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=26.07 E-value=90 Score=24.08 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=33.3
Q ss_pred CCceEEEEEc-CCe-eeeecC--CCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCcH
Q psy16967 127 NSTSCAYTIN-KNV-NSFRLN--VVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSM 180 (282)
Q Consensus 127 ~~~G~gvv~~-~~~-~~~~l~--~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS~ 180 (282)
..+|++++.. +.. ...... ...-..-||..||..|... -......+.|++|..
T Consensus 36 f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 36 FPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDLQ 92 (146)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred CCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCCC
Confidence 3588886644 333 322222 1222456999999999976 334568899998863
No 28
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=24.13 E-value=36 Score=32.16 Aligned_cols=71 Identities=10% Similarity=0.000 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhcCCCCeEEEE----eCc---HHHHHHHhcCCCCchHHHHHHHHHHHHHhCCCceEEEecCCcCCCc
Q psy16967 155 LMAILLCLQNLKYLPSTKFLLV----TDS---MSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCGIS 225 (282)
Q Consensus 155 l~AI~~AL~~~~~~~~~~i~I~----sDS---~~al~~l~~~~~~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~gi~ 225 (282)
+.+|..-|.++..++...|.|. +.+ -+.+.-.......-|....+.+++.++.++|..|-+-+|+.|++..
T Consensus 31 l~gi~~~Ldyl~~LGv~~I~L~Pi~~~~~~~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NHts~~ 108 (557)
T 1zja_A 31 FKGLTEKLDYLKGLGIDAIWINPHYASPNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKRGMRLMVDVVINHSSDQ 108 (557)
T ss_dssp HHHHHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECCSBCCTT
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCccCCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence 5567777777777766666543 111 0000000000011134678888888899999999999999999875
No 29
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=23.91 E-value=1.5e+02 Score=27.58 Aligned_cols=70 Identities=6% Similarity=-0.100 Sum_probs=49.0
Q ss_pred H-HHHHHHHHHhhcCCCCeEEEE----------------eCcHHHHHHHhcCC--CCchHHHHHHHHHHHHHhCCCceEE
Q psy16967 155 L-MAILLCLQNLKYLPSTKFLLV----------------TDSMSSLQAITSKS--CNNALLSKIYSTWLDLVACGKEISF 215 (282)
Q Consensus 155 l-~AI~~AL~~~~~~~~~~i~I~----------------sDS~~al~~l~~~~--~~~~~~~~i~~~~~~l~~~~~~v~~ 215 (282)
+ .+|..-|.++..++...|.|. +|.-+. ..... ..-|-..++.+++.++.++|..|-+
T Consensus 35 ~~~gi~~~LdyLk~LGvt~IwL~Pi~e~~~~~~~~~~~~~~~GY~---~~~id~~p~~Gt~~dfk~Lv~~aH~~GI~Vil 111 (527)
T 1gcy_A 35 WYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYF---WHDFNKNGRYGSDAQLRQAASALGGAGVKVLY 111 (527)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTT---CSSSCSCSSSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCccccccccccCCCCCCCCCcc---cccCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 6 888888999988877666653 111111 11111 2224577888888889999999999
Q ss_pred EecCCcCCCccc
Q psy16967 216 MWCPSHCGISGN 227 (282)
Q Consensus 216 ~WVpgH~gi~gN 227 (282)
=+|+-|++....
T Consensus 112 D~V~NHt~~~~~ 123 (527)
T 1gcy_A 112 DVVPNHMNRGYP 123 (527)
T ss_dssp EECCSBCCTTCS
T ss_pred EEeecCcCCCCC
Confidence 999999987653
No 30
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=23.62 E-value=32 Score=32.66 Aligned_cols=68 Identities=13% Similarity=0.006 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCCCCeEEEE--eCcHHHHHHHhcCCCC---------chHHHHHHHHHHHHHhCCCceEEEecCCcCC
Q psy16967 155 LMAILLCLQNLKYLPSTKFLLV--TDSMSSLQAITSKSCN---------NALLSKIYSTWLDLVACGKEISFMWCPSHCG 223 (282)
Q Consensus 155 l~AI~~AL~~~~~~~~~~i~I~--sDS~~al~~l~~~~~~---------~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~g 223 (282)
+.+|..-|.++..++...|.|. ..|-. -..+... -|....+.+++.++.++|..|-+-+|+.|++
T Consensus 44 l~gi~~~LdyL~~LGv~~I~l~Pi~~~~~----~~~GYd~~dy~~idp~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~s 119 (570)
T 1m53_A 44 IRGIIEKLDYLKSLGIDAIWINPHYDSPN----TDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINHTS 119 (570)
T ss_dssp HHHHHHTHHHHHHHTCCEEEECCCEECCC----TTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCC----CCCCCCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEeccccc
Confidence 5566777777777776666553 11100 0111111 1346788888888999999999999999998
Q ss_pred Ccc
Q psy16967 224 ISG 226 (282)
Q Consensus 224 i~g 226 (282)
...
T Consensus 120 ~~~ 122 (570)
T 1m53_A 120 DQH 122 (570)
T ss_dssp TTS
T ss_pred ccc
Confidence 743
No 31
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=23.48 E-value=1e+02 Score=23.16 Aligned_cols=51 Identities=12% Similarity=0.007 Sum_probs=31.8
Q ss_pred CceEEEEEc-CCe-eeeecCCCCchHHHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q psy16967 128 STSCAYTIN-KNV-NSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDS 179 (282)
Q Consensus 128 ~~G~gvv~~-~~~-~~~~l~~~~s~~~AEl~AI~~AL~~~~~~~~~~i~I~sDS 179 (282)
.+|+++... +.. ............-||..||..|... -......+.+++|.
T Consensus 28 ~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 28 SVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 588886544 333 2222322333566999999999875 23356788888875
No 32
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=21.93 E-value=46 Score=30.53 Aligned_cols=73 Identities=14% Similarity=0.096 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEe--CcHHHHHHH--h-cC---------CCCchHHHHHHHHHHHHHhCCCceEEEecCC
Q psy16967 155 LMAILLCLQNLKYLPSTKFLLVT--DSMSSLQAI--T-SK---------SCNNALLSKIYSTWLDLVACGKEISFMWCPS 220 (282)
Q Consensus 155 l~AI~~AL~~~~~~~~~~i~I~s--DS~~al~~l--~-~~---------~~~~~~~~~i~~~~~~l~~~~~~v~~~WVpg 220 (282)
+.+|..-|.++..++...|.|.- ++...-... . .. ...-|-..++.++++++.++|..|-+=+|+.
T Consensus 42 ~~gi~~~LdyL~~lGvt~I~l~Pi~~~~~~~~~~~~~~~GY~~~d~~~idp~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 121 (478)
T 2guy_A 42 WQGIIDKLDYIQGMGFTAIWITPVTAQLPQTTAYGDAYHGYWQQDIYSLNENYGTADDLKALSSALHERGMYLMVDVVAN 121 (478)
T ss_dssp HHHHHHTHHHHHTTTCCEEEECCCEEECCCCBTTBCCTTSCSEEEEEEECTTSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCcccCCccccCCCCCCCCCCcccccccCccCCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 56777778888888766665521 110000000 0 00 0111346788888888999999999999999
Q ss_pred cCCCccc
Q psy16967 221 HCGISGN 227 (282)
Q Consensus 221 H~gi~gN 227 (282)
|++..+.
T Consensus 122 H~~~~~~ 128 (478)
T 2guy_A 122 HMGYDGA 128 (478)
T ss_dssp BCCEEBC
T ss_pred cCCCCCC
Confidence 9987543
No 33
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=21.43 E-value=40 Score=31.06 Aligned_cols=68 Identities=10% Similarity=-0.088 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhhcCCCCeEEEE--eCcHHHHHHHhcCCC---------CchHHHHHHHHHHHHHhCCCceEEEecCCcCC
Q psy16967 155 LMAILLCLQNLKYLPSTKFLLV--TDSMSSLQAITSKSC---------NNALLSKIYSTWLDLVACGKEISFMWCPSHCG 223 (282)
Q Consensus 155 l~AI~~AL~~~~~~~~~~i~I~--sDS~~al~~l~~~~~---------~~~~~~~i~~~~~~l~~~~~~v~~~WVpgH~g 223 (282)
+.+|...|.++..++...|.+. .+|.+ ..... .-|....+.+++.++.++|..|-+-+|+.|++
T Consensus 55 l~gi~~~LdyL~~LGv~~I~L~Pi~~~~~-----~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~s 129 (488)
T 2wc7_A 55 LWGIMEDLDYIQNLGINAIYFTPIFQSAS-----NHRYHTHDYYQVDPMLGGNEAFKELLDAAHQRNIKVVLDGVFNHSS 129 (488)
T ss_dssp HHHHHHTHHHHHHHTCCEEEESCCEEECT-----TCTTSEEEEEEECGGGTHHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred HHHHHHhhHHHHHcCCCEEEECCCCCCCC-----CCCCCCcCccccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCcCC
Confidence 6778888888888777666553 11110 11111 11346788888888999999999999999998
Q ss_pred Cccc
Q psy16967 224 ISGN 227 (282)
Q Consensus 224 i~gN 227 (282)
....
T Consensus 130 ~~~~ 133 (488)
T 2wc7_A 130 RGFF 133 (488)
T ss_dssp SSSH
T ss_pred CcCH
Confidence 7643
Done!