RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16967
(282 letters)
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 51.8 bits (124), Expect = 2e-08
Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 18/130 (13%)
Query: 119 FTDGSKTENS--TSCAYTI---NKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKF 173
+TDGS + + + + L S AEL+A+ L+ + K
Sbjct: 27 YTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMAE---GKKL 83
Query: 174 LLVTDSMSSLQAITSKSCNNALLSKIYSTW---LDLVACGKEISFMWCPSHCG-----IS 225
+ TDS + S K + L + K +S + CP H
Sbjct: 84 NVYTDSRYAFATAHVHSEGRE--IKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEAR 141
Query: 226 GNEAVDVAAK 235
GN D AA+
Sbjct: 142 GNRMADQAAR 151
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 46.4 bits (111), Expect = 1e-06
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 23/101 (22%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----KSCN----------NALLS 197
AE+ A ++ K K +L T+SM ++ IT+ K N
Sbjct: 53 AEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKED- 111
Query: 198 KIYSTW--LDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
+ L+ + G +I +M P H G GNE D A+
Sbjct: 112 -----FVALERLTQGMDIQWMHVPGHSGFIGNEEADRLARE 147
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 42.7 bits (101), Expect = 2e-05
Identities = 24/137 (17%), Positives = 38/137 (27%), Gaps = 24/137 (17%)
Query: 114 DRILCFTDGSKTENSTSCAY-TINKNVNSFRL--------NVVNSVFSAELMAILLCLQN 164
+TDGS + AY + + + E+ A L ++
Sbjct: 5 TEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKK 64
Query: 165 LKYLPSTKFLLVTDSMSSLQAITS------KSCNNALLSKIYSTWLDLVACGKEISFMWC 218
L K ++ D I K+ N SF
Sbjct: 65 ASQLGV-KIRILHDY----AGIAFWATGEWKA-KNEFTQAYAKLMNQY---RGIYSFEKV 115
Query: 219 PSHCGISGNEAVDVAAK 235
+H G N+ VD+ AK
Sbjct: 116 KAHSGNEFNDYVDMKAK 132
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 4e-05
Identities = 47/320 (14%), Positives = 85/320 (26%), Gaps = 108/320 (33%)
Query: 28 NEFFNRNYDF-----ANHPNTPKPLLMRAREITDFIANIDSSEFAPYDKHIPPW------ 76
E NY F P + E D + N D+ FA Y+
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQ 142
Query: 77 --SSVVPSIDTSLH----SGKKDNVSPSVFQVQFLVNINTKYHDRILCFTDGSKTENSTS 130
+ P+ + + SGK + + +
Sbjct: 143 ALLELRPAKNVLIDGVLGSGK------TW-----VALDVCLSYKVQCKMDFK-------- 183
Query: 131 CAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQA----- 185
+ +N + + S E +L LQ L Y + +D S+++
Sbjct: 184 -IFWLN----------LKNCNSPE--TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 186 -------ITSKSCNNALLSKIYSTWLDLVACGKEI--SFMWCPSHC-------------G 223
+ SK N LL + L V + +F C
Sbjct: 231 QAELRRLLKSKPYENCLL--V----LLNV-QNAKAWNAF---NLSCKILLTTRFKQVTDF 280
Query: 224 ISGNEAVDVAAKNPSPSFPP---LKL------CSASDYKPLIKKI----------VQRNW 264
+S ++ + S + P L C D + R+
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 265 QSSWNSVP--NGNKLKTYRK 282
++W++ N +KL T +
Sbjct: 341 LATWDNWKHVNCDKLTTIIE 360
Score = 38.3 bits (88), Expect = 0.003
Identities = 36/225 (16%), Positives = 70/225 (31%), Gaps = 52/225 (23%)
Query: 12 MNY-VSKIGSCHRN--PIHNEFFNRNYDFANHPNTPKPLLMRAREITDFIANIDSSEFAP 68
M++ + +++ + + F N+D + + PK +L EI D I +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL-SKEEI-DHIIMSKDAVSGT 64
Query: 69 Y-------DKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVN-INTKYHDRILCFT 120
K V ++ L + N FL++ I T+ +
Sbjct: 65 LRLFWTLLSK---QEEMVQKFVEEVL----RINYK-------FLMSPIKTEQRQPSM--- 107
Query: 121 DGSKTENSTSCAYTINKNVNSFR-LNVVNSVFSAELMAIL-LCLQNLKYLPSTKFLLVTD 178
T + + F NV + L L L+ K +L+ D
Sbjct: 108 ---MTRMYIEQRDRLYNDNQVFAKYNVS----RLQPYLKLRQALLELR---PAKNVLI-D 156
Query: 179 SM-----SSL--QAITSKSCNNALLSKIYSTWLDLVACGKEISFM 216
+ + + S + KI+ WL+L C + +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVL 199
Score = 38.3 bits (88), Expect = 0.003
Identities = 51/303 (16%), Positives = 107/303 (35%), Gaps = 70/303 (23%)
Query: 7 RSKMIMNYVSKIGSCHRNPIHNEF-FNRNYD---FANHPNT-----PK------PLL--M 49
R K + +++S + H + H+ + + + P+ P +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 50 RAREITDFIANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGKKDNVSPSVFQVQFLVNIN 109
A I D +A D+ + DK +++ I++SL + + P+ ++
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKL----TTI---IESSL-----NVLEPAEYR-------- 372
Query: 110 TKYHDRILCFTDGSKTENSTSCAYTINKNVNSFRLNVVNSVFSAELMAILLCLQNLK--- 166
K DR+ F + + + + VVN +L L + K
Sbjct: 373 -KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV-VVN-----KLHKYSLVEKQPKEST 425
Query: 167 -YLPSTKFLLVTDSMSSLQAITSKSCNNALLSKIYSTWLDLVACGKEISFMWCPSHCG-- 223
+PS +L + + + A+ ++ + K + + + SH G
Sbjct: 426 ISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSD----DLIPPYLDQYFYSHIGHH 480
Query: 224 ISGNEAVDVAAKNPSPSFPPLKLCSASDYKPLIKKIVQRNWQSSWN---SVPNG-NKLKT 279
+ E + F + L D++ L +KI R+ ++WN S+ N +LK
Sbjct: 481 LKNIEHPERMT-----LFRMVFL----DFRFLEQKI--RHDSTAWNASGSILNTLQQLKF 529
Query: 280 YRK 282
Y+
Sbjct: 530 YKP 532
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 43.2 bits (102), Expect = 6e-05
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 12/82 (14%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDS---MSSLQAITSKSCNNALLSKIYSTWLDLVAC 209
EL AI L LQ+ + +VTDS + +QA KS + L+++I ++ +
Sbjct: 479 TELQAIYLALQDSG----LEVNIVTDSQYALGIIQAQPDKS-ESELVNQI----IEQLIK 529
Query: 210 GKEISFMWCPSHCGISGNEAVD 231
+++ W P+H GI GNE VD
Sbjct: 530 KEKVYLAWVPAHKGIGGNEQVD 551
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 40.9 bits (96), Expect = 3e-04
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK--SCNNALLSKIYSTWLDLVACG 210
AEL A + L + K ++ DS + + S+ + ++++I +
Sbjct: 476 AELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMI-----K 526
Query: 211 KEISFM-WCPSHCGISGNEAVD 231
KE ++ W P+H GI GN+ VD
Sbjct: 527 KEAIYVAWVPAHKGIGGNQEVD 548
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 38.7 bits (91), Expect = 4e-04
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 28/102 (27%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS-----KSCN----------NALLS 197
EL AI L LQ+ + +VTDS +L IT K N L
Sbjct: 52 TELQAIYLALQDSG----LEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDL- 106
Query: 198 KIYSTW---LDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
++ + +++ W P+H GI GNE VD
Sbjct: 107 -----VNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 143
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain,
fusion protein, maltose binding protein, HYDR; HET: MLR
TAR; 2.25A {Mycobacterium tuberculosis}
Length = 141
Score = 36.9 bits (86), Expect = 0.002
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 153 AELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITSK-SCNNALLSKIYSTWLDLVACGK 211
AE ++ L + L +T+ ++ DS ++ ++ + + L K+Y L + +
Sbjct: 49 AEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFR 108
Query: 212 EISFMWCP----SHCGISGNEAVDVAAKNPS 238
I++ W P ++ N+A+D AA++ +
Sbjct: 109 RINYEWVPRARNTYADRLANDAMDAAAQSAA 139
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.010
Identities = 28/137 (20%), Positives = 45/137 (32%), Gaps = 43/137 (31%)
Query: 3 LSLRRSKMIMNY-VSKIGSCHRNP-IHNEF------FNRNYDFANHPNTPKPLLMRAREI 54
L+LR++K S+I R N F F H LL+ A ++
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF--------H----SHLLVPASDL 438
Query: 55 TDFIANIDSSEFAPYDKHIPPWSSVVPSIDTSLHSGK-----KDNVSPSVFQVQFLVNIN 109
+ ++ F D IP V DT G ++S + + +
Sbjct: 439 INKDLVKNNVSFNAKDIQIP----V---YDT--FDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 110 ----TKY---HDRILCF 119
T++ H IL F
Sbjct: 490 WETTTQFKATH--ILDF 504
Score = 32.7 bits (74), Expect = 0.14
Identities = 43/260 (16%), Positives = 79/260 (30%), Gaps = 63/260 (24%)
Query: 39 NHPNT------PKPLLMRAREITD-FIANI--DSSEFAPYDKHIPPWSSV---------V 80
+H + P A ++ + F + + FA D P + V
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD---EPTTPAELVGKFLGYV 68
Query: 81 PSIDTSLHSGKKDNVSPSV---FQVQFLVNINTKYHDRILCFTDGSKTENSTSCAYTINK 137
S+ G+ D V F+ +L + H + T T+ K
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQENDT--------TLVK 118
Query: 138 NVNSFRLNVVNSVFSAELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAI-----TSKSCN 192
++ + +A I+ K S F V + + L AI +
Sbjct: 119 -----TKELIKNYITA---RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY- 169
Query: 193 NAL--LSKIYSTWLDLVA-----CGKEI-SFMWCPSHCGISGNEAVDVAA--KNPSPSFP 242
L +Y T+ LV + + + + +++ +NPS + P
Sbjct: 170 --FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT-P 226
Query: 243 PLK-LCSASDYKPLIKKIVQ 261
L S PLI ++Q
Sbjct: 227 DKDYLLSIPISCPLI-GVIQ 245
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase;
2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Length = 524
Score = 33.9 bits (78), Expect = 0.056
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 107 NINTKYHDRILCFTDGSKTENSTSCAYTINKNVNS 141
N + F D S +N T AY ++ +
Sbjct: 284 NCVLDKRTGEIDFYDESICKN-TRVAYPLSHIEGA 317
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability,
hydrogen exchange, cooperativity, hydrolase; 1.30A
{Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A
1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A
1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A
3aa5_X 1rbv_A ...
Length = 155
Score = 32.5 bits (75), Expect = 0.058
Identities = 31/106 (29%), Positives = 39/106 (36%), Gaps = 29/106 (27%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS---------------KSCNNALLSK 198
ELMA ++ L+ LK + +L TDS Q IT K N L
Sbjct: 48 ELMAAIVALEALK--EHAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDL-- 103
Query: 199 IYSTW--LDLVACGKEISFMWCPSHCGISGNEAVDV----AAKNPS 238
W LD +I + W H G NE D AA NP+
Sbjct: 104 ----WQRLDAALGQHQIKWEWVKGHAGHPENERADELARAAAMNPT 145
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine
triphosphate, T thermophilus; 2.00A {Thermus
thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A*
2pc9_A*
Length = 529
Score = 32.7 bits (75), Expect = 0.12
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 107 NINTKYHDRILCFTDGSKTENSTSCAYTINKNVNS 141
N+ R + + D SKTEN T +Y I N
Sbjct: 297 NVVVNPESRRVQWDDDSKTEN-TRSSYPIAHLENV 330
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 30.1 bits (69), Expect = 0.34
Identities = 22/107 (20%), Positives = 32/107 (29%), Gaps = 30/107 (28%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS----------------KSCNNALLS 197
ELMA + L+ LK + L +DS + A+ K N L
Sbjct: 48 ELMAAIKGLEALKE--PARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDL- 104
Query: 198 KIYSTW--LDLVACGKEISFMWCPSHCGISGNEAVDV----AAKNPS 238
W + + ++F H N D A K S
Sbjct: 105 -----WQEILKLTTLHRVTFHKVKGHSDNPYNSRADELARLAIKENS 146
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A
{Shewanella oneidensis} PDB: 2zqb_A
Length = 158
Score = 30.2 bits (69), Expect = 0.40
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 25/100 (25%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS---------------KSCNNALLSK 198
EL+A ++ L+ LK K +L +DS Q I + N L
Sbjct: 50 ELLAPIVALEALKE--PCKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDL-- 105
Query: 199 IYSTW--LDLVACGKEISFMWCPSHCGISGNEAVDVAAKN 236
W LD A +I + W H G + NE D A+
Sbjct: 106 ----WKRLDKAAQLHQIDWRWVKGHAGHAENERCDQLARA 141
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP;
1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1
PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X*
1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Length = 540
Score = 30.9 bits (70), Expect = 0.51
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 106 VNINTKY-HDRILCFTDGSKTENSTSCAYTINKNVNS 141
+ N D + F DGSKTEN T +Y I N
Sbjct: 309 LLENVTVREDGTIDFDDGSKTEN-TRVSYPIYHIDNI 344
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 29.9 bits (68), Expect = 0.56
Identities = 27/112 (24%), Positives = 37/112 (33%), Gaps = 30/112 (26%)
Query: 154 ELMAILLCLQNLKYLPSTKFLLVTDSMSSLQAITS----------------KSCNNALLS 197
EL A + L+ LK + L TDS +A T K N L
Sbjct: 52 ELKAAIEGLKALKE--PCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDL- 108
Query: 198 KIYSTW--LDLVACGKEISFMWCPSHCGISGNEAVDV----AAKNPSPSFPP 243
W L L + F + H G NE VD A++ + + P
Sbjct: 109 -----WEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQAKTPCP 155
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.93
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 163 QNLKYLPSTKFLLVTDSMSSLQAITS 188
Q LK L ++ L DS +L AI +
Sbjct: 20 QALKKLQASLKLYADDSAPAL-AIKA 44
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate;
domain closure, nucleotide binding; HET: ATP; 2.20A
{Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Length = 532
Score = 29.3 bits (66), Expect = 1.6
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 109 NTKYH-DRILCFTDGSKTENSTSCAYTIN 136
N + + F D S TEN T +Y I
Sbjct: 306 NVTVDANGKVDFADKSVTEN-TRVSYPIF 333
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.403
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,124,782
Number of extensions: 221793
Number of successful extensions: 410
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 22
Length of query: 282
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 190
Effective length of database: 4,133,061
Effective search space: 785281590
Effective search space used: 785281590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)