BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16969
(77 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54219|VMAT1_HUMAN Chromaffin granule amine transporter OS=Homo sapiens GN=SLC18A1
PE=2 SV=1
Length = 525
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 42/54 (77%)
Query: 3 GLIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLG 56
GLIGP+ GLGL IG++DS+++P++ +VD RHT+ YGS+YA+ A + +++G
Sbjct: 391 GLIGPNAGLGLAIGMVDSSMMPIMGHLVDLRHTSVYGSVYAIADVAFCMGFAIG 444
>sp|Q01818|VMAT1_RAT Chromaffin granule amine transporter OS=Rattus norvegicus
GN=Slc18a1 PE=2 SV=1
Length = 521
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%)
Query: 3 GLIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLG 56
GLIGP+ GLG IG++DS+L+P++ +VD RHT+ YGS+YA+ A + +++G
Sbjct: 388 GLIGPNAGLGFAIGMVDSSLMPIMGYLVDLRHTSVYGSVYAIADVAFCVGFAIG 441
>sp|Q8R090|VMAT1_MOUSE Chromaffin granule amine transporter OS=Mus musculus GN=Slc18a1
PE=2 SV=1
Length = 521
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 41/54 (75%)
Query: 3 GLIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLG 56
GLIGP+ GLG IG++DS+L+P++ +VD RHT+ YGS+YA+ A + +++G
Sbjct: 388 GLIGPNAGLGFAIGMVDSSLMPIMGYLVDLRHTSVYGSVYAIADVAFCVGFAIG 441
>sp|Q05940|VMAT2_HUMAN Synaptic vesicular amine transporter OS=Homo sapiens GN=SLC18A2
PE=1 SV=2
Length = 514
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 39/54 (72%)
Query: 3 GLIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLG 56
GLI P+ G+G IG++DS+++P++ +VD RH + YGS+YA+ A + Y++G
Sbjct: 383 GLIAPNFGVGFAIGMVDSSMMPIMGYLVDLRHVSVYGSVYAIADVAFCMGYAIG 436
>sp|Q8BRU6|VMAT2_MOUSE Synaptic vesicular amine transporter OS=Mus musculus GN=Slc18a2
PE=1 SV=1
Length = 517
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 39/54 (72%)
Query: 3 GLIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLG 56
GLI P+ G+G IG++DS+++P++ +VD RH + YGS+YA+ A + Y++G
Sbjct: 386 GLIAPNFGVGFAIGMVDSSMMPIMGYLVDLRHVSVYGSVYAIADVAFCMGYAIG 439
>sp|Q01827|VMAT2_RAT Synaptic vesicular amine transporter OS=Rattus norvegicus
GN=Slc18a2 PE=1 SV=2
Length = 515
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 39/54 (72%)
Query: 3 GLIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLG 56
GLI P+ G+G IG++DS+++P++ +VD RH + YGS+YA+ A + Y++G
Sbjct: 384 GLIAPNFGVGFAIGMVDSSMMPIMGYLVDLRHVSVYGSVYAIADVAFCMGYAIG 437
>sp|Q27963|VMAT2_BOVIN Synaptic vesicular amine transporter OS=Bos taurus GN=SLC18A2 PE=1
SV=1
Length = 517
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 39/54 (72%)
Query: 3 GLIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLG 56
GLI P+ G+G IG++DS+++P++ +VD RH + YGS+YA+ A + Y++G
Sbjct: 386 GLIAPNFGVGFAIGMVDSSMMPIMGYLVDLRHVSVYGSVYAIADVAFCMGYAIG 439
>sp|Q08C75|VACHA_DANRE Probable vesicular acetylcholine transporter-A OS=Danio rerio
GN=slc18a3a PE=2 SV=1
Length = 513
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTK 63
LI P G+ GI ++D+AL+P LA +VD RH + YGS+YA+ + +AY+LG V
Sbjct: 354 LIIPLCGVCFGIALVDTALLPTLAFLVDVRHVSVYGSVYAIADISYCVAYALGPIVAGKI 413
Query: 64 IMDL 67
+ DL
Sbjct: 414 VHDL 417
>sp|P59845|VACHB_DANRE Probable vesicular acetylcholine transporter-B OS=Danio rerio
GN=slc18a3b PE=2 SV=1
Length = 493
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 39/56 (69%)
Query: 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFV 59
L+ P G+ GI ++D+AL+P LA +VD RH + YGS+YA+ + S+AY++G V
Sbjct: 342 LVFPLCGICFGIALVDTALLPTLAFLVDVRHVSVYGSVYAIADISYSVAYAMGPVV 397
>sp|Q16572|VACHT_HUMAN Vesicular acetylcholine transporter OS=Homo sapiens GN=SLC18A3 PE=1
SV=2
Length = 532
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 10 GLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFV 59
GL GI ++D+AL+P LA +VD RH + YGS+YA+ + S+AY+LG V
Sbjct: 389 GLCFGIALVDTALLPTLAFLVDVRHVSVYGSVYAIADISYSVAYALGPIV 438
>sp|O35304|VACHT_MOUSE Vesicular acetylcholine transporter OS=Mus musculus GN=Slc18a3 PE=2
SV=1
Length = 530
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 10 GLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFV 59
GL GI ++D+AL+P LA +VD RH + YGS+YA+ + S+AY+LG V
Sbjct: 389 GLCFGIALVDTALLPTLAFLVDVRHVSVYGSVYAIADISYSVAYALGPIV 438
>sp|Q62666|VACHT_RAT Vesicular acetylcholine transporter OS=Rattus norvegicus GN=Slc18a3
PE=2 SV=2
Length = 530
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 10 GLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFV 59
GL GI ++D+AL+P LA +VD RH + YGS+YA+ + S+AY+LG V
Sbjct: 389 GLCFGIALVDTALLPTLAFLVDVRHVSVYGSVYAIADISYSVAYALGPIV 438
>sp|P81721|VACHT_TORCA Vesicular acetylcholine transporter OS=Torpedo californica PE=2
SV=2
Length = 515
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTK 63
LI P L GI ++D+AL+P LA +VD R+ + YGS+YA+ + S+AY+LG +
Sbjct: 368 LIIPLCALCFGIALVDTALLPTLAFLVDIRYVSVYGSVYAIADISYSVAYALGPIMAGQI 427
Query: 64 IMDL 67
+ DL
Sbjct: 428 VHDL 431
>sp|Q91498|VACHT_TORMA Vesicular acetylcholine transporter OS=Torpedo marmorata PE=2 SV=2
Length = 511
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTK 63
LI P L GI ++D+AL+P LA +VD R+ + YGS+YA+ + S+AY+LG +
Sbjct: 364 LIIPLCALCFGIALVDTALLPTLAFLVDIRYVSVYGSVYAIADISYSVAYALGPIMAGQI 423
Query: 64 IMDL 67
+ DL
Sbjct: 424 VHDL 427
>sp|Q91514|VACHT_TORTO Vesicular acetylcholine transporter OS=Torpedo torpedo PE=2 SV=1
Length = 511
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTK 63
LI P L GI ++D+AL+P LA +VD R+ + YGS+YA+ + S+AY+LG +
Sbjct: 364 LIIPLCALCFGIALVDTALLPTLAFLVDIRYVSVYGSVYAIADISYSVAYALGPIMAGQI 423
Query: 64 IMDL 67
+ DL
Sbjct: 424 VHDL 427
>sp|P34711|UNC17_CAEEL Vesicular acetylcholine transporter unc-17 OS=Caenorhabditis
elegans GN=unc-17 PE=2 SV=1
Length = 532
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFV 59
L+ P + GI ++D++L+P+L +VD+RH + YGS+YA+ + SLAY+ G +
Sbjct: 362 LVIPLSFVCFGIALIDTSLLPMLGHLVDTRHVSVYGSVYAIADISYSLAYAFGPII 417
>sp|O17444|VACHT_DROME Vesicular acetylcholine transporter OS=Drosophila melanogaster
GN=VAChT PE=2 SV=2
Length = 578
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFV 59
L+ P + GI ++D+AL+P L +VD R+ + YGSIYA+ + S+AY++G +
Sbjct: 357 LMLPICVICFGIALIDTALLPTLGYLVDVRYVSVYGSIYAIADISYSIAYAVGPII 412
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,267,853
Number of Sequences: 539616
Number of extensions: 911363
Number of successful extensions: 2301
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2284
Number of HSP's gapped (non-prelim): 21
length of query: 77
length of database: 191,569,459
effective HSP length: 48
effective length of query: 29
effective length of database: 165,667,891
effective search space: 4804368839
effective search space used: 4804368839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)