Query psy16969
Match_columns 77
No_of_seqs 81 out of 83
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 18:19:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3764|consensus 99.9 8.8E-23 1.9E-27 163.4 3.3 72 2-73 362-436 (464)
2 TIGR00792 gph sugar (Glycoside 97.1 0.0014 3.1E-08 47.9 5.5 70 6-75 316-389 (437)
3 TIGR00880 2_A_01_02 Multidrug 96.7 0.0039 8.5E-08 37.2 4.4 64 6-72 56-119 (141)
4 TIGR00900 2A0121 H+ Antiporter 96.6 0.0031 6.8E-08 43.8 4.1 60 6-68 306-365 (365)
5 TIGR00900 2A0121 H+ Antiporter 96.4 0.003 6.6E-08 43.8 2.9 65 5-72 96-160 (365)
6 PRK09669 putative symporter Ya 96.4 0.01 2.2E-07 44.6 5.8 69 8-76 326-399 (444)
7 PRK09874 drug efflux system pr 96.3 0.0049 1.1E-07 44.4 3.7 43 30-72 337-379 (408)
8 PF07690 MFS_1: Major Facilita 96.3 0.008 1.7E-07 41.7 4.6 66 4-72 88-153 (352)
9 TIGR00924 yjdL_sub1_fam amino 96.3 0.0027 5.9E-08 49.2 2.5 68 5-72 106-173 (475)
10 TIGR00711 efflux_EmrB drug res 96.0 0.0082 1.8E-07 44.4 3.6 67 4-73 93-159 (485)
11 PRK12382 putative transporter; 96.0 0.012 2.6E-07 42.8 4.2 61 9-72 310-370 (392)
12 PRK10504 putative transporter; 95.9 0.0087 1.9E-07 44.7 3.5 66 4-72 101-166 (471)
13 PRK03633 putative MFS family t 95.9 0.014 3.1E-07 42.6 4.4 47 26-72 307-353 (381)
14 PRK03545 putative arabinose tr 95.7 0.03 6.5E-07 40.9 5.3 37 36-72 325-361 (390)
15 TIGR00892 2A0113 monocarboxyla 95.6 0.013 2.8E-07 44.7 3.4 61 5-68 337-397 (455)
16 PRK05122 major facilitator sup 95.6 0.021 4.6E-07 41.5 4.2 62 8-72 309-370 (399)
17 TIGR00889 2A0110 nucleoside tr 95.6 0.018 3.8E-07 43.6 3.9 59 7-68 314-373 (418)
18 PRK09848 glucuronide transport 95.6 0.038 8.3E-07 41.5 5.7 68 5-72 323-394 (448)
19 PRK10207 dipeptide/tripeptide 95.5 0.011 2.5E-07 46.3 2.9 66 6-72 110-175 (489)
20 PRK11646 multidrug resistance 95.4 0.026 5.6E-07 42.2 4.3 56 9-67 305-360 (400)
21 PRK11128 putative 3-phenylprop 95.4 0.028 6.2E-07 41.2 4.4 61 5-69 297-358 (382)
22 TIGR00890 2A0111 Oxalate/Forma 95.4 0.027 5.8E-07 39.2 3.9 61 9-72 303-363 (377)
23 PRK10429 melibiose:sodium symp 95.4 0.044 9.6E-07 41.9 5.5 68 9-76 332-403 (473)
24 PRK10489 enterobactin exporter 95.3 0.013 2.8E-07 43.3 2.3 59 11-72 120-178 (417)
25 TIGR00902 2A0127 phenyl propri 95.3 0.031 6.7E-07 41.1 4.3 61 5-69 297-358 (382)
26 PF05977 MFS_3: Transmembrane 95.2 0.018 3.8E-07 46.5 3.1 67 4-73 106-172 (524)
27 PRK10213 nepI ribonucleoside t 95.2 0.026 5.6E-07 42.1 3.7 66 4-72 111-176 (394)
28 TIGR00881 2A0104 phosphoglycer 95.2 0.06 1.3E-06 37.5 5.3 44 29-72 335-378 (379)
29 TIGR02718 sider_RhtX_FptX side 95.1 0.056 1.2E-06 39.5 5.2 36 36-71 336-371 (390)
30 TIGR00899 2A0120 sugar efflux 95.1 0.054 1.2E-06 38.3 5.0 59 10-72 297-355 (375)
31 TIGR00710 efflux_Bcr_CflA drug 95.1 0.027 5.9E-07 39.9 3.4 65 5-72 97-161 (385)
32 PRK10504 putative transporter; 95.1 0.034 7.5E-07 41.5 4.1 61 8-71 360-420 (471)
33 PRK03545 putative arabinose tr 95.0 0.034 7.3E-07 40.7 3.8 61 9-72 105-165 (390)
34 TIGR00893 2A0114 d-galactonate 94.9 0.03 6.4E-07 38.7 3.0 65 5-72 86-150 (399)
35 PRK10489 enterobactin exporter 94.9 0.042 9E-07 40.5 4.0 45 27-71 335-379 (417)
36 TIGR00891 2A0112 putative sial 94.9 0.046 9.9E-07 38.8 4.0 65 4-71 103-167 (405)
37 TIGR00895 2A0115 benzoate tran 94.8 0.019 4E-07 40.4 2.0 66 4-72 108-173 (398)
38 PRK11646 multidrug resistance 94.8 0.035 7.5E-07 41.5 3.5 64 5-72 103-166 (400)
39 PRK11102 bicyclomycin/multidru 94.8 0.046 1E-06 39.1 3.9 63 7-72 85-147 (377)
40 PRK05122 major facilitator sup 94.7 0.027 5.8E-07 41.0 2.5 60 9-71 120-179 (399)
41 cd06174 MFS The Major Facilita 94.7 0.047 1E-06 37.3 3.6 65 5-72 269-333 (352)
42 PRK09584 tppB putative tripept 94.6 0.037 8.1E-07 43.3 3.3 65 7-72 118-182 (500)
43 TIGR00891 2A0112 putative sial 94.5 0.068 1.5E-06 37.9 4.1 42 31-72 355-397 (405)
44 TIGR00897 2A0118 polyol permea 94.4 0.13 2.8E-06 38.1 5.5 36 36-71 346-381 (402)
45 PRK06814 acylglycerophosphoeth 94.4 0.047 1E-06 45.8 3.6 67 3-72 110-176 (1140)
46 PRK12382 putative transporter; 94.3 0.083 1.8E-06 38.4 4.4 59 10-71 121-179 (392)
47 TIGR00902 2A0127 phenyl propri 94.3 0.047 1E-06 40.1 3.1 56 15-71 104-159 (382)
48 PRK10091 MFS transport protein 94.2 0.081 1.8E-06 38.8 4.1 63 7-72 97-159 (382)
49 PRK14995 methyl viologen resis 94.1 0.066 1.4E-06 41.2 3.6 67 4-72 97-163 (495)
50 PRK11128 putative 3-phenylprop 94.0 0.046 1E-06 40.1 2.6 57 15-72 104-160 (382)
51 cd06174 MFS The Major Facilita 94.0 0.04 8.7E-07 37.7 2.1 63 7-72 93-155 (352)
52 PRK11663 regulatory protein Uh 94.0 0.069 1.5E-06 40.1 3.5 62 9-73 119-180 (434)
53 PRK11195 lysophospholipid tran 94.0 0.086 1.9E-06 39.3 4.0 55 9-66 96-150 (393)
54 PRK15011 sugar efflux transpor 93.9 0.13 2.8E-06 37.9 4.8 36 37-72 337-372 (393)
55 TIGR00893 2A0114 d-galactonate 93.8 0.1 2.2E-06 36.1 3.9 45 28-72 335-380 (399)
56 PRK10054 putative transporter; 93.7 0.13 2.8E-06 38.4 4.5 42 26-71 323-364 (395)
57 PRK11010 ampG muropeptide tran 93.6 0.19 4.2E-06 39.1 5.4 57 12-71 327-383 (491)
58 TIGR00788 fbt folate/biopterin 93.5 0.18 3.8E-06 39.2 5.2 60 8-70 358-417 (468)
59 PF13347 MFS_2: MFS/sugar tran 93.5 0.037 8.1E-07 41.4 1.4 73 4-76 318-395 (428)
60 PRK11551 putative 3-hydroxyphe 93.5 0.17 3.6E-06 36.8 4.6 55 10-67 317-371 (406)
61 PRK10213 nepI ribonucleoside t 93.3 0.17 3.6E-06 37.8 4.6 61 7-71 311-371 (394)
62 PRK15403 multidrug efflux syst 93.3 0.11 2.3E-06 39.2 3.5 66 4-72 107-172 (413)
63 TIGR00895 2A0115 benzoate tran 93.1 0.18 3.9E-06 35.4 4.2 55 7-64 344-398 (398)
64 TIGR01272 gluP glucose/galacto 93.1 0.18 3.9E-06 37.1 4.3 60 4-66 13-72 (310)
65 TIGR00883 2A0106 metabolite-pr 92.9 0.12 2.6E-06 36.1 3.0 58 8-68 319-377 (394)
66 TIGR00885 fucP L-fucose:H+ sym 92.8 0.15 3.4E-06 38.6 3.7 60 4-66 97-156 (410)
67 PRK03893 putative sialic acid 92.7 0.14 2.9E-06 38.4 3.2 65 5-72 112-176 (496)
68 TIGR00711 efflux_EmrB drug res 92.6 0.19 4.2E-06 37.2 4.0 60 4-66 351-410 (485)
69 PRK10473 multidrug efflux syst 92.5 0.21 4.7E-06 36.3 4.1 62 8-72 98-159 (392)
70 TIGR00882 2A0105 oligosacchari 92.5 0.17 3.7E-06 37.1 3.5 34 39-72 342-376 (396)
71 PRK06814 acylglycerophosphoeth 91.8 0.19 4.2E-06 42.2 3.5 55 8-65 341-395 (1140)
72 PRK15011 sugar efflux transpor 91.8 0.53 1.2E-05 34.7 5.5 62 11-72 111-175 (393)
73 PRK10054 putative transporter; 91.8 0.31 6.8E-06 36.3 4.3 44 27-71 119-162 (395)
74 KOG2615|consensus 91.8 0.063 1.4E-06 44.1 0.6 41 25-65 141-181 (451)
75 PRK11043 putative transporter; 91.7 0.26 5.6E-06 36.0 3.7 63 7-72 100-162 (401)
76 PRK09528 lacY galactoside perm 91.6 0.19 4.1E-06 37.2 2.9 46 27-72 338-384 (420)
77 TIGR00879 SP MFS transporter, 91.6 0.29 6.2E-06 35.0 3.7 66 4-72 130-198 (481)
78 PRK15402 multidrug efflux syst 91.2 0.37 7.9E-06 35.3 4.1 63 7-72 107-169 (406)
79 PRK08633 2-acyl-glycerophospho 90.9 0.28 6.2E-06 40.7 3.6 59 5-66 107-165 (1146)
80 PRK14995 methyl viologen resis 90.8 0.37 7.9E-06 37.2 3.9 59 5-66 355-413 (495)
81 PF00854 PTR2: POT family; In 90.8 0.36 7.7E-06 35.9 3.7 69 4-72 36-104 (372)
82 PRK11663 regulatory protein Uh 90.6 0.75 1.6E-05 34.6 5.3 44 29-72 362-405 (434)
83 PRK03893 putative sialic acid 90.5 0.18 3.9E-06 37.7 2.0 43 30-72 392-434 (496)
84 PRK11551 putative 3-hydroxyphe 90.5 0.42 9.2E-06 34.7 3.8 65 4-71 106-170 (406)
85 PRK11462 putative transporter; 90.3 0.97 2.1E-05 34.9 5.9 64 9-72 326-393 (460)
86 PRK03699 putative transporter; 90.3 0.84 1.8E-05 33.6 5.3 36 37-72 326-361 (394)
87 TIGR00899 2A0120 sugar efflux 90.0 0.7 1.5E-05 32.7 4.5 31 42-72 127-157 (375)
88 PF05977 MFS_3: Transmembrane 90.0 0.45 9.7E-06 38.5 3.9 64 7-73 313-376 (524)
89 PRK12307 putative sialic acid 89.7 0.46 1E-05 34.7 3.5 64 6-72 111-174 (426)
90 TIGR00896 CynX cyanate transpo 89.4 0.59 1.3E-05 33.5 3.8 34 35-68 317-350 (355)
91 TIGR00892 2A0113 monocarboxyla 89.3 0.31 6.7E-06 37.2 2.4 59 11-73 118-176 (455)
92 PRK11652 emrD multidrug resist 89.1 0.67 1.5E-05 33.7 3.9 63 7-72 102-164 (394)
93 TIGR00881 2A0104 phosphoglycer 89.0 0.087 1.9E-06 36.6 -0.7 66 4-72 86-152 (379)
94 TIGR00894 2A0114euk Na(+)-depe 88.9 0.84 1.8E-05 34.3 4.5 64 9-72 135-200 (465)
95 PRK03633 putative MFS family t 88.7 0.71 1.5E-05 33.7 3.9 59 5-66 98-156 (381)
96 PRK15402 multidrug efflux syst 88.3 1.3 2.8E-05 32.5 5.0 59 6-68 314-372 (406)
97 TIGR00901 2A0125 AmpG-related 88.0 0.97 2.1E-05 32.3 4.1 56 10-68 92-147 (356)
98 TIGR00896 CynX cyanate transpo 87.8 1 2.2E-05 32.3 4.1 60 5-68 91-150 (355)
99 PF07690 MFS_1: Major Facilita 87.6 1.1 2.4E-05 31.0 4.1 49 6-57 304-352 (352)
100 KOG4686|consensus 87.5 0.67 1.5E-05 37.9 3.4 60 6-68 357-416 (459)
101 TIGR01299 synapt_SV2 synaptic 87.0 0.73 1.6E-05 39.1 3.4 63 4-69 258-320 (742)
102 TIGR02332 HpaX 4-hydroxyphenyl 86.7 0.9 2E-05 34.1 3.5 57 6-65 101-157 (412)
103 PRK09874 drug efflux system pr 86.5 1.7 3.7E-05 31.3 4.7 43 30-72 132-174 (408)
104 PRK11902 ampG muropeptide tran 86.5 2.1 4.5E-05 31.6 5.2 54 15-71 317-370 (402)
105 PRK11652 emrD multidrug resist 86.5 1.6 3.6E-05 31.7 4.7 61 5-69 303-363 (394)
106 TIGR00712 glpT glycerol-3-phos 86.4 0.87 1.9E-05 34.2 3.2 45 29-73 370-415 (438)
107 PRK15462 dipeptide/tripeptide 86.1 0.85 1.8E-05 36.9 3.3 59 10-72 109-170 (493)
108 TIGR00897 2A0118 polyol permea 85.9 0.82 1.8E-05 33.9 2.8 44 27-70 128-172 (402)
109 PRK10133 L-fucose transporter; 84.8 0.84 1.8E-05 35.0 2.6 58 4-64 120-177 (438)
110 PRK11195 lysophospholipid tran 84.5 1.8 3.8E-05 32.3 4.1 64 6-73 298-362 (393)
111 COG0738 FucP Fucose permease [ 84.3 1.2 2.6E-05 36.4 3.4 59 5-66 108-166 (422)
112 TIGR00890 2A0111 Oxalate/Forma 84.1 1.5 3.3E-05 30.4 3.4 63 5-71 95-157 (377)
113 PRK08633 2-acyl-glycerophospho 83.8 2.3 4.9E-05 35.5 4.8 57 6-65 327-383 (1146)
114 KOG3764|consensus 83.2 1.6 3.4E-05 36.2 3.6 59 10-70 168-226 (464)
115 PRK12307 putative sialic acid 83.1 1.3 2.9E-05 32.4 2.9 42 30-71 347-388 (426)
116 PRK09952 shikimate transporter 82.7 2.3 5E-05 32.2 4.1 55 10-67 352-407 (438)
117 PRK10133 L-fucose transporter; 82.7 3.8 8.3E-05 31.4 5.4 66 7-74 30-95 (438)
118 PRK09528 lacY galactoside perm 82.6 1 2.3E-05 33.3 2.2 45 20-65 122-166 (420)
119 PRK11273 glpT sn-glycerol-3-ph 82.3 3.9 8.5E-05 30.9 5.3 45 28-72 371-416 (452)
120 TIGR00885 fucP L-fucose:H+ sym 82.2 4.7 0.0001 30.6 5.7 65 7-73 7-71 (410)
121 TIGR02332 HpaX 4-hydroxyphenyl 81.7 2 4.4E-05 32.2 3.5 40 34-73 363-403 (412)
122 TIGR00882 2A0105 oligosacchari 80.6 1.4 3.1E-05 32.2 2.3 53 12-65 106-158 (396)
123 PRK03699 putative transporter; 80.6 2.5 5.5E-05 31.1 3.6 65 5-72 99-164 (394)
124 TIGR00879 SP MFS transporter, 80.5 2 4.4E-05 30.6 3.0 42 30-71 409-450 (481)
125 TIGR00712 glpT glycerol-3-phos 78.5 3.3 7.1E-05 31.1 3.7 60 8-70 125-185 (438)
126 TIGR00805 oat sodium-independe 78.4 1.5 3.2E-05 36.0 1.9 60 5-67 176-235 (633)
127 TIGR00903 2A0129 major facilit 77.3 3.5 7.7E-05 31.0 3.6 62 7-72 85-146 (368)
128 PRK10091 MFS transport protein 77.1 6 0.00013 29.0 4.7 66 6-73 6-71 (382)
129 PRK11010 ampG muropeptide tran 76.6 4.1 8.8E-05 31.8 3.9 59 9-70 115-174 (491)
130 PRK11273 glpT sn-glycerol-3-ph 75.7 11 0.00024 28.5 5.9 44 27-73 53-96 (452)
131 PRK09705 cynX putative cyanate 75.5 3.8 8.1E-05 30.4 3.3 33 36-68 325-357 (393)
132 TIGR00710 efflux_Bcr_CflA drug 75.4 6.7 0.00014 27.8 4.4 55 17-73 19-73 (385)
133 TIGR00886 2A0108 nitrite extru 73.7 8.1 0.00018 27.3 4.5 55 8-66 98-152 (366)
134 TIGR01272 gluP glucose/galacto 73.1 5.4 0.00012 29.3 3.6 58 15-73 240-297 (310)
135 TIGR00788 fbt folate/biopterin 73.1 7.5 0.00016 30.3 4.5 64 7-71 126-189 (468)
136 PRK11043 putative transporter; 72.1 13 0.00028 27.1 5.4 51 21-73 24-74 (401)
137 TIGR00883 2A0106 metabolite-pr 71.9 5.5 0.00012 27.8 3.2 55 8-65 103-157 (394)
138 TIGR01299 synapt_SV2 synaptic 71.7 6.5 0.00014 33.5 4.2 55 9-66 656-710 (742)
139 PRK11902 ampG muropeptide tran 71.5 5.4 0.00012 29.4 3.3 53 11-66 104-156 (402)
140 PRK15075 citrate-proton sympor 71.2 9.2 0.0002 28.7 4.5 58 10-70 340-398 (434)
141 TIGR00898 2A0119 cation transp 71.0 2.1 4.5E-05 32.4 1.0 58 5-65 184-241 (505)
142 KOG2504|consensus 70.8 7.5 0.00016 31.5 4.2 59 7-68 394-452 (509)
143 COG0477 ProP Permeases of the 70.0 8.9 0.00019 24.3 3.6 54 11-66 104-158 (338)
144 PRK15075 citrate-proton sympor 68.1 8.2 0.00018 28.9 3.7 54 9-65 125-178 (434)
145 PRK09556 uhpT sugar phosphate 67.9 16 0.00035 27.7 5.3 39 27-65 372-411 (467)
146 TIGR00924 yjdL_sub1_fam amino 67.4 7.6 0.00017 30.2 3.5 64 3-69 383-446 (475)
147 PRK10077 xylE D-xylose transpo 67.1 13 0.00029 27.6 4.6 53 9-64 128-180 (479)
148 TIGR02718 sider_RhtX_FptX side 65.7 18 0.00039 26.4 5.0 41 31-71 124-164 (390)
149 PRK09705 cynX putative cyanate 63.9 14 0.0003 27.4 4.2 59 5-67 101-159 (393)
150 PRK09556 uhpT sugar phosphate 63.2 27 0.00058 26.6 5.7 63 6-73 31-97 (467)
151 PRK15403 multidrug efflux syst 60.0 35 0.00076 25.7 5.8 58 5-66 316-373 (413)
152 PRK10473 multidrug efflux syst 57.4 34 0.00074 24.8 5.2 45 26-72 26-70 (392)
153 TIGR00887 2A0109 phosphate:H+ 55.6 21 0.00045 27.5 4.0 58 5-65 119-176 (502)
154 PF03825 Nuc_H_symport: Nucleo 55.1 19 0.00042 27.9 3.8 59 12-73 312-371 (400)
155 TIGR00886 2A0108 nitrite extru 54.4 20 0.00044 25.2 3.5 32 42-73 39-70 (366)
156 PRK09952 shikimate transporter 54.3 31 0.00066 26.1 4.7 55 8-65 132-186 (438)
157 PF01306 LacY_symp: LacY proto 53.5 9.2 0.0002 30.7 1.8 57 12-71 323-380 (412)
158 PF11700 ATG22: Vacuole efflux 52.6 31 0.00066 27.7 4.6 58 8-68 387-444 (477)
159 COG2211 MelB Na+/melibiose sym 51.6 18 0.0004 29.7 3.3 69 8-76 334-407 (467)
160 PRK10642 proline/glycine betai 49.3 43 0.00094 25.7 4.8 58 4-64 121-178 (490)
161 PF03092 BT1: BT1 family; Int 48.5 32 0.0007 26.8 4.1 50 21-70 335-384 (433)
162 TIGR00901 2A0125 AmpG-related 46.4 45 0.00098 23.8 4.3 41 7-50 315-355 (356)
163 KOG0255|consensus 45.3 15 0.00033 28.2 1.8 29 43-71 121-149 (521)
164 KOG2816|consensus 45.2 11 0.00023 30.5 1.0 49 25-73 133-181 (463)
165 PRK10406 alpha-ketoglutarate t 43.8 60 0.0013 24.3 4.8 57 5-64 128-184 (432)
166 KOG0569|consensus 42.5 19 0.00042 29.6 2.1 62 11-73 23-93 (485)
167 TIGR00898 2A0119 cation transp 41.9 39 0.00085 25.5 3.5 35 27-61 433-467 (505)
168 KOG2533|consensus 41.3 23 0.00051 28.8 2.4 38 34-71 75-112 (495)
169 PRK10077 xylE D-xylose transpo 40.9 49 0.0011 24.6 3.9 38 34-71 394-437 (479)
170 TIGR00894 2A0114euk Na(+)-depe 40.5 43 0.00093 25.1 3.6 30 37-66 393-422 (465)
171 COG2814 AraJ Arabinose efflux 40.5 81 0.0017 25.4 5.3 37 35-71 330-366 (394)
172 TIGR01301 GPH_sucrose GPH fami 40.2 61 0.0013 26.2 4.6 64 4-68 383-446 (477)
173 PF03209 PUCC: PUCC protein; 39.3 63 0.0014 26.3 4.5 60 6-68 94-153 (403)
174 PRK11102 bicyclomycin/multidru 38.8 47 0.001 23.7 3.4 46 21-71 12-57 (377)
175 TIGR00806 rfc RFC reduced fola 37.9 74 0.0016 26.8 4.8 55 9-68 123-177 (511)
176 PRK09584 tppB putative tripept 37.5 23 0.00049 27.9 1.7 58 4-68 385-442 (500)
177 COG2814 AraJ Arabinose efflux 36.9 89 0.0019 25.2 5.0 61 9-72 109-169 (394)
178 KOG2615|consensus 36.3 53 0.0012 27.4 3.7 45 20-64 367-412 (451)
179 PLN00028 nitrate transmembrane 36.3 1.2E+02 0.0025 23.5 5.4 49 22-72 55-103 (476)
180 PTZ00207 hypothetical protein; 35.5 47 0.001 27.8 3.3 56 6-65 125-181 (591)
181 TIGR01301 GPH_sucrose GPH fami 35.2 83 0.0018 25.5 4.6 54 14-70 127-184 (477)
182 PLN00028 nitrate transmembrane 34.9 1E+02 0.0022 23.8 4.9 52 9-64 132-183 (476)
183 PRK10207 dipeptide/tripeptide 31.4 62 0.0014 25.5 3.3 55 4-61 382-436 (489)
184 PF15103 G0-G1_switch_2: G0/G1 27.7 39 0.00085 23.0 1.4 22 4-25 29-50 (102)
185 PRK04164 hypothetical protein; 27.1 30 0.00066 24.7 0.8 22 46-67 67-88 (181)
186 PF06779 DUF1228: Protein of u 26.9 1.3E+02 0.0029 19.2 3.7 45 17-66 9-53 (85)
187 PRK10642 proline/glycine betai 25.6 2.2E+02 0.0048 21.9 5.3 34 34-68 372-406 (490)
188 PF01554 MatE: MatE; InterPro 25.4 1.2E+02 0.0025 19.1 3.3 43 25-68 19-61 (162)
189 COG2807 CynX Cyanate permease 22.2 1.4E+02 0.0031 24.5 3.9 56 8-68 303-361 (395)
190 COG0785 CcdA Cytochrome c biog 22.0 2.1E+02 0.0046 21.0 4.5 47 6-55 127-177 (220)
191 PRK10406 alpha-ketoglutarate t 21.3 1.9E+02 0.0041 21.6 4.2 64 9-73 27-96 (432)
192 PF15179 Myc_target_1: Myc tar 21.2 52 0.0011 24.7 1.1 18 46-63 22-39 (197)
193 KOG1330|consensus 20.9 32 0.00069 28.9 -0.1 59 7-68 127-185 (493)
No 1
>KOG3764|consensus
Probab=99.86 E-value=8.8e-23 Score=163.43 Aligned_cols=72 Identities=38% Similarity=0.701 Sum_probs=70.6
Q ss_pred CccchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCC---cchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 2 SGLIGPHLGLGLGIGILDSALVPLLASVVDSRHTA---HYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 2 ~~li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~---~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
.||++|++++|++++++||+++|+|+++||.||++ +||+||||+|++||+||++||.++|.+++++||+|.+
T Consensus 362 ~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~ 436 (464)
T KOG3764|consen 362 AQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLM 436 (464)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHH
Confidence 57999999999999999999999999999999999 9999999999999999999999999999999999987
No 2
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.09 E-value=0.0014 Score=47.87 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcC----CCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchhcc
Q psy16969 6 GPHLGLGLGIGILDSALVPLLASVVDSR----HTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSRQQ 75 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~lP~la~lvD~r----~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~~~ 75 (77)
+..++.|++.+...+.....+++.+|.. +...-|.++++.+.+..+|..+||.++|.+.+..|+....+|
T Consensus 316 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~ 389 (437)
T TIGR00792 316 VLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQ 389 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcC
Confidence 3446667777777766667788888732 244579999999999999999999999999999999765444
No 3
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=96.72 E-value=0.0039 Score=37.24 Aligned_cols=64 Identities=17% Similarity=0.101 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 6 GPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
...++.|++.+...+.....+.+.+|. ...+.++++.+...+++..+||.++|.+.+..|..+.
T Consensus 56 ~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 119 (141)
T TIGR00880 56 IARFLQGFGAAFALVAGAALIADIYPP---EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAP 119 (141)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHCCh---hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHH
Confidence 345677777777776655555555544 4578899999999999999999999999988776543
No 4
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=96.64 E-value=0.0031 Score=43.77 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 6 GPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
...++.|++.+...+.....+.+.+ .....|.++++.+...+++..+||.++|.+.+.+|
T Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 306 VLWFAIGVGYGPINVPQGTLLQRRV---PAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455667766666555444444444 45567999999999999999999999999999876
No 5
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=96.43 E-value=0.003 Score=43.84 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=49.9
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
+.-.++.|++.+...++....+.+.+ .....+.++++.+...++|..+||.+++.+.+.+|..|.
T Consensus 96 ~~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~ 160 (365)
T TIGR00900 96 YVLAGILAIAQAFFTPAYQAMLPDLV---PEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWA 160 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33455667777777666555555554 444789999999999999999999999999998887654
No 6
>PRK09669 putative symporter YagG; Provisional
Probab=96.40 E-value=0.01 Score=44.64 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHh--cC--CCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch-hccc
Q psy16969 8 HLGLGLGIGILDSALVPLLASVVD--SR--HTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS-RQQS 76 (77)
Q Consensus 8 ~~~lG~~ig~vds~~lP~la~lvD--~r--~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~-~~~~ 76 (77)
.++.|++.+..-....-.+++.+| .+ +...-|..|++...+..+|.++||.++|.+.+..|+... -+|+
T Consensus 326 ~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~~~~~~q~ 399 (444)
T PRK09669 326 NILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYVGGAAVQS 399 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 345566666655444446778887 22 344678999999999999999999999999999999632 2454
No 7
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=96.34 E-value=0.0049 Score=44.42 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=35.9
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 30 VDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 30 vD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
.|.......|.++++.+....+|..+||.++|.+.+.+|..+.
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~ 379 (408)
T PRK09874 337 VYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAV 379 (408)
T ss_pred HHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHH
Confidence 3434455789999999999999999999999999999887654
No 8
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=96.33 E-value=0.008 Score=41.68 Aligned_cols=66 Identities=21% Similarity=0.302 Sum_probs=51.8
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
++.-.++.|++.+...+.....+.+.. .....+.++++.+...++|..+||.+++.+.+.+|..|.
T Consensus 88 ~~~~~~l~g~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~ 153 (352)
T PF07690_consen 88 LLIARFLLGIGSGFFSPASNALIADWF---PPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWA 153 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC---CTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCH
T ss_pred Hhhhccccccccccccccccccccccc---hhhhhhhccccccchhhhhhhcccchhhhhhhccccccc
Confidence 344556777777777777555554444 556889999999999999999999999999998887665
No 9
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=96.33 E-value=0.0027 Score=49.19 Aligned_cols=68 Identities=4% Similarity=0.096 Sum_probs=55.9
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
....+++|++.|+......+..++..|.++.+.-+.++++.+.+.++|..+||.++|.+.+.+|+.+.
T Consensus 106 ~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~ 173 (475)
T TIGR00924 106 FYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVG 173 (475)
T ss_pred HHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 34556778888888777778889998866555677789999999999999999999999998887664
No 10
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=96.02 E-value=0.0082 Score=44.39 Aligned_cols=67 Identities=19% Similarity=0.105 Sum_probs=52.5
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
++.-.++.|++.+...+.....+.+.++.+ ..|.+.++......+|..+||.++|.+.+++|..|..
T Consensus 93 l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f 159 (485)
T TIGR00711 93 MIIFRVIQGFGGGPLIPLSFSTLLNIYPPE---KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIF 159 (485)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehh
Confidence 344556778888887777666666666433 4688999999999999999999999999998877653
No 11
>PRK12382 putative transporter; Provisional
Probab=95.96 E-value=0.012 Score=42.78 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=43.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
++.|++.+..... ......|.-.....|.++++.+....+|.++||.++|.+.+..|+.+.
T Consensus 310 ~l~g~~~~~~~~~---~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~ 370 (392)
T PRK12382 310 ALTGAGCSLIFPA---LGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSV 370 (392)
T ss_pred HHHHHHHHhHHHH---HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH
Confidence 3445555443332 223344443456689999999999999999999999999999987654
No 12
>PRK10504 putative transporter; Provisional
Probab=95.95 E-value=0.0087 Score=44.69 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=48.5
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
++.-.++.|++.+..-....-.+.+.+ ....++.++++.+...++|..+||.++|.+++..|..|.
T Consensus 101 l~~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~ 166 (471)
T PRK10504 101 LLLARVLQGVGGAMMVPVGRLTVMKIV---PREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWI 166 (471)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHH
Confidence 445566777777765444323333333 445678999999999999999999999999999886654
No 13
>PRK03633 putative MFS family transporter protein; Provisional
Probab=95.92 E-value=0.014 Score=42.64 Aligned_cols=47 Identities=9% Similarity=0.003 Sum_probs=37.6
Q ss_pred HHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 26 LASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 26 la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
++...|..+....+..+...+..+++|.++||.++|.+.+..|..|.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~ 353 (381)
T PRK03633 307 MAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLL 353 (381)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence 44455555555667888888999999999999999999999987654
No 14
>PRK03545 putative arabinose transporter; Provisional
Probab=95.68 E-value=0.03 Score=40.95 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=33.6
Q ss_pred CcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 36 AHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 36 ~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
...|.+.++++..+.+|..+||+++|.+++++|++..
T Consensus 325 ~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~ 361 (390)
T PRK03545 325 DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSI 361 (390)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHH
Confidence 4679999999999999999999999999999998754
No 15
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=95.63 E-value=0.013 Score=44.70 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=47.5
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
++-.++.|++.++..+.....+.+.++ ....|.++++.+.+.++|..+||.++|.+.+..|
T Consensus 337 ~i~~~~~G~~~g~~~~~~~~~~~~~~~---~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g 397 (455)
T TIGR00892 337 VIYCIFFGLSFGSVGALLFEVLMDLVG---AQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK 397 (455)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhh---HHHHhhHHhHHHHHHHHHHHccccceeeeehhcC
Confidence 344556777777776665555666664 4467899999999999999999999999998875
No 16
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=95.59 E-value=0.021 Score=41.51 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 8 HLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 8 ~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
..+.|++.+..-..+ .....|.-.....|.++++++....+|..+||.+.|.+.+.+|..+.
T Consensus 309 ~~l~G~~~~~~~~~~---~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 370 (399)
T PRK05122 309 AALTGFGFSLVFPAL---GVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSI 370 (399)
T ss_pred HHHHHHhHHHHHHHH---HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 345566665544322 23344444567789999999999999999999999999999887654
No 17
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=95.58 E-value=0.018 Score=43.62 Aligned_cols=59 Identities=10% Similarity=0.023 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHH-HHHHHHHhhcccchhhhhhccC
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQ-TAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~-~a~slg~~iGP~~~G~Lv~~ig 68 (77)
..++.|++.+....+.. ..+.|.-....+|.++++.+ ..+++|..+||.++|.+.+..|
T Consensus 314 ~~~l~g~~~~~~~~~~~---~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g 373 (418)
T TIGR00889 314 SMIVYGCAFDFFNISGS---VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF 373 (418)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 34455666665544322 33444445667899999998 6789999999999999999865
No 18
>PRK09848 glucuronide transporter; Provisional
Probab=95.58 E-value=0.038 Score=41.46 Aligned_cols=68 Identities=13% Similarity=0.041 Sum_probs=54.8
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcC--C--CCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSR--H--TAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r--~--~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
+..+++.|++.++..+......++.+|.. + ...-|..+++.+...-+|.++|+.+.|.+.+..|+...
T Consensus 323 ~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~ 394 (448)
T PRK09848 323 LVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIAN 394 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34566778888888887777888888743 2 23568899999999999999999999999999998643
No 19
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=95.54 E-value=0.011 Score=46.34 Aligned_cols=66 Identities=9% Similarity=0.175 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 6 GPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
.-.+.+|++-|+.-....+.+++..+.++ ...+.+|.+......+|-.+||.++|.+.+.+|..|.
T Consensus 110 ~~~~l~~ig~g~~~~~~~~li~~~~p~~~-~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~ 175 (489)
T PRK10207 110 IALGTIAVGNGLFKANPASLLSKCYPPKD-PRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVT 175 (489)
T ss_pred HHHHHHHhccccccCCHHHHHHHhcCCCc-hhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHH
Confidence 45667788888888777889999997544 2456678888889999999999999999999986553
No 20
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=95.43 E-value=0.026 Score=42.17 Aligned_cols=56 Identities=18% Similarity=0.036 Sum_probs=39.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhcc
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDL 67 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~i 67 (77)
++.|++.+....+..-.+.+.+ .....|+++++.+..+++|..+||.++|.+.+..
T Consensus 305 ~l~~~g~~~~~p~~~~~~~~~~---p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 305 CLFYIGSIIAEPARETLSASLA---DARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred HHHHHHHHHHHccHHHHHHhcC---CcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 3345555544444332333333 4567889999999999999999999999999874
No 21
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=95.40 E-value=0.028 Score=41.17 Aligned_cols=61 Identities=11% Similarity=-0.039 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHH-HHHHHHHhhcccchhhhhhccCc
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQ-TAVSLAYSLGKFVVPTKIMDLSM 69 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~-~a~slg~~iGP~~~G~Lv~~igf 69 (77)
++..++.|++.++.-.+ +-..++++..+.+|.+.++++ ...++|..+||.++|.+.+.+|.
T Consensus 297 ~~~~~l~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~ 358 (382)
T PRK11128 297 IVIQILHCGTFTVCHLA----AMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA 358 (382)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 34455556666654333 334455556667788888886 66788999999999999999874
No 22
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=95.37 E-value=0.027 Score=39.18 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
++.|+..|..-+.....+.+.++ ....|.++++.+.+..+|..+||.++|.+.+..|..+.
T Consensus 303 ~~~g~~~g~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 363 (377)
T TIGR00890 303 ALVFFTWGGTISLFPSLVSDIFG---PANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYT 363 (377)
T ss_pred HHHHHHhccchhccHHHHHHHhh---hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhH
Confidence 34555555554433334555554 45678999999999999999999999999999987654
No 23
>PRK10429 melibiose:sodium symporter; Provisional
Probab=95.37 E-value=0.044 Score=41.93 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhc----CCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchhccc
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDS----RHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSRQQS 76 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~----r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~~~~ 76 (77)
.+.|++.+..-....-.+++.+|. .+...-|..|+......-+|.++||.+.|.+.+..|+....+|+
T Consensus 332 ~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~~~~~q~ 403 (473)
T PRK10429 332 ILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYVPNVEQS 403 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCC
Confidence 344555555554444568888883 23344788999999999999999999999999999997655665
No 24
>PRK10489 enterobactin exporter EntS; Provisional
Probab=95.31 E-value=0.013 Score=43.26 Aligned_cols=59 Identities=14% Similarity=0.036 Sum_probs=43.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 11 LGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 11 lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
.|+..+...++....+.+.++. ...+.+.++.+...++|..+||.++|.+.+..|..|.
T Consensus 120 ~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~ 178 (417)
T PRK10489 120 DGFFGSLGVTALLAATPALVGR---ENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWN 178 (417)
T ss_pred HHHHHHHHHHHHhhhhhhccCH---HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHH
Confidence 3555555555544445555543 4567888999999999999999999999998887664
No 25
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=95.30 E-value=0.031 Score=41.10 Aligned_cols=61 Identities=8% Similarity=-0.083 Sum_probs=47.5
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHH-HHHHHHHhhcccchhhhhhccCc
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQ-TAVSLAYSLGKFVVPTKIMDLSM 69 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~-~a~slg~~iGP~~~G~Lv~~igf 69 (77)
+.-.+.-|++.|+.-.+ .+.++-|. ....++...++++ +++.+|..+||.++|.+.+.+|.
T Consensus 297 ~~~q~l~g~~~~~~~~~---~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~ 358 (382)
T TIGR00902 297 FLLQILHCGTFAVCHLA---AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA 358 (382)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 34456778888887777 44555554 5667788899987 57899999999999999999885
No 26
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=95.24 E-value=0.018 Score=46.51 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=52.0
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
|++-.+++|++.++.+.+.--.+.++|++. ....+-++.++.++++-.+||.+||.|+..+|..++.
T Consensus 106 Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~---~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f 172 (524)
T PF05977_consen 106 LLILTFLLGIGSAFFNPAWQAIIPELVPKE---DLPAANALNSISFNIARIIGPALGGILVAFFGAAAAF 172 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHh---hHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 344456666666666666666677778654 4778889999999999999999999999999987753
No 27
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=95.20 E-value=0.026 Score=42.11 Aligned_cols=66 Identities=17% Similarity=0.038 Sum_probs=47.9
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
+++.-+..|++.|..-........+.+ +....|.+.++.....++|..+||.+++.+.+.+|..|.
T Consensus 111 l~~~r~l~G~~~g~~~~~~~~~i~~~~---~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~ 176 (394)
T PRK10213 111 LLIGRACLGLALGGFWAMSASLTMRLV---PPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNV 176 (394)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHc---CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 334445667776665443333344444 455688899999999999999999999999999887654
No 28
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=95.19 E-value=0.06 Score=37.46 Aligned_cols=44 Identities=7% Similarity=-0.095 Sum_probs=37.5
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 29 VVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 29 lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
..|.-.....|.++++.+...+++..+||.+.|.+.+.+|..+.
T Consensus 335 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 335 ASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred HHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 34444556779999999999999999999999999999998764
No 29
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=95.15 E-value=0.056 Score=39.52 Aligned_cols=36 Identities=8% Similarity=-0.038 Sum_probs=33.0
Q ss_pred CcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 36 AHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 36 ~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
...|+.+++.+...++|..+||.++|.+.+.+|...
T Consensus 336 ~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~ 371 (390)
T TIGR02718 336 DQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAG 371 (390)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 577999999999999999999999999999988754
No 30
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=95.12 E-value=0.054 Score=38.34 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=42.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 10 GLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 10 ~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
+.|+..|..-........+..+ ...|.+.++.+....+|..+||.++|.+.+..|..+.
T Consensus 297 ~~g~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~ 355 (375)
T TIGR00899 297 LNAIFIGILAGIGMLYFQDLMP----GRAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAV 355 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 3455566554433333444443 2457999999999999999999999999999886543
No 31
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=95.10 E-value=0.027 Score=39.88 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=49.3
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
+.-.++.|++.+...++....+.+.. +....|.++++.+....+|..+||.++|.+.+.+|..+.
T Consensus 97 ~~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~ 161 (385)
T TIGR00710 97 LVLRFVQAFGASAGSVISQALVRDIY---PGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAI 161 (385)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 33455677777777776555555555 345678999999999999999999999999998876553
No 32
>PRK10504 putative transporter; Provisional
Probab=95.09 E-value=0.034 Score=41.52 Aligned_cols=61 Identities=13% Similarity=-0.018 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 8 HLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 8 ~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
..+.|++.+..-++....+...++. ...|.++++.++...+|.++||.++|.+.+..|...
T Consensus 360 ~~~~g~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~~ 420 (471)
T PRK10504 360 LFLQGMVNSTRFSSMNTLTLKDLPD---NLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQH 420 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCH---HhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3445566665555555555555543 478888999999999999999999999999998853
No 33
>PRK03545 putative arabinose transporter; Provisional
Probab=95.01 E-value=0.034 Score=40.67 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=43.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
++.|++.+...+.....+.+.. ....-|.+.++.+...++|..+||.+++.+.+.+|..|.
T Consensus 105 ~~~G~~~~~~~~~~~~~i~~~~---~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~ 165 (390)
T PRK03545 105 IGIAFAHAIFWSITASLAIRVA---PAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTT 165 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---ChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHH
Confidence 4445555444333333333333 445578899999999999999999999999999887665
No 34
>TIGR00893 2A0114 d-galactonate transporter.
Probab=94.90 E-value=0.03 Score=38.73 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=49.3
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
+.-.++.|++.+...++....+.+.++ ....|.+.++.+...++|..+||.+++.+.+..|..|.
T Consensus 86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 150 (399)
T TIGR00893 86 YILRVLLGAAEAPFFPGIILIVASWFP---ASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWA 150 (399)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhCC---HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHH
Confidence 344567777777777665555555553 34568899999999999999999999999998886654
No 35
>PRK10489 enterobactin exporter EntS; Provisional
Probab=94.88 E-value=0.042 Score=40.55 Aligned_cols=45 Identities=9% Similarity=-0.019 Sum_probs=36.7
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 27 ASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 27 a~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
+...|.-.....|.++++++....+|..+||.+.|.+.+.+|...
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~ 379 (417)
T PRK10489 335 TLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVA 379 (417)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhh
Confidence 334444455678999999999999999999999999999988543
No 36
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=94.86 E-value=0.046 Score=38.76 Aligned_cols=65 Identities=9% Similarity=0.036 Sum_probs=49.0
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
++.-.++.|++.+..+.+....+.+.+ .....|.+.++.+....+|..+||.+++.+.+..|..|
T Consensus 103 l~~~~~l~G~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w 167 (405)
T TIGR00891 103 MFIARLVIGIGMGGEYGSSAAYVIESW---PKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW 167 (405)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhC---ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence 344456777887877776555555554 44556889999999999999999999999998887444
No 37
>TIGR00895 2A0115 benzoate transport.
Probab=94.84 E-value=0.019 Score=40.38 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=50.4
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
++...++.|++.+...++....+.+..+ ....|.+.++.+....+|..+||.++|.+.+..|..+.
T Consensus 108 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~ 173 (398)
T TIGR00895 108 LLILRFLAGLGLGGLMPNLNALVSEYAP---KRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSL 173 (398)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHcC---HHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceee
Confidence 3445667788878777765555555554 34567888999999999999999999999998886553
No 38
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=94.83 E-value=0.035 Score=41.49 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=45.9
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
+.-.++.|++.+....+....+.+.+ .....|.++++.+....+|..+||.++|.+. .+|+.|.
T Consensus 103 ~~~~~l~g~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~ 166 (400)
T PRK11646 103 WLSCILSGLGGTLFDPPRTALVIKLI---RPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLV 166 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHH
Confidence 34445566666665554444444444 4456899999999999999999999999998 6676553
No 39
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=94.80 E-value=0.046 Score=39.07 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
-.++.|++.+..+......+. |.......|.+.++.+....+|..+||.+++.+.+.+|..|.
T Consensus 85 ~~~l~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 147 (377)
T PRK11102 85 MRFLHGLAAAAASVVINALMR---DMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAI 147 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH
Confidence 345567777766655444444 444455678999999999999999999999999998886554
No 40
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=94.68 E-value=0.027 Score=40.99 Aligned_cols=60 Identities=17% Similarity=0.069 Sum_probs=44.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
++.|++.+.........+.+.+ .....|.+-++...+.++|..+||.+++.+.+.+|+.+
T Consensus 120 ~l~G~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~ 179 (399)
T PRK05122 120 LLLGIGESLAGTGSILWGIGRV---GALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAG 179 (399)
T ss_pred HHHHhhHHhhcchHHHHHHhhc---ChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHH
Confidence 4566666666555433344444 44456778888899999999999999999999988765
No 41
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=94.67 E-value=0.047 Score=37.31 Aligned_cols=65 Identities=23% Similarity=0.202 Sum_probs=50.3
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
+...++.|++.+...+.....+.+.+ +....|.++++.+....++..++|.++|.+.+..|..+.
T Consensus 269 ~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~ 333 (352)
T cd06174 269 LVALLLLGFGLGFAFPALLTLASELA---PPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGV 333 (352)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchH
Confidence 34556677777777766444555555 446779999999999999999999999999998877654
No 42
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=94.60 E-value=0.037 Score=43.31 Aligned_cols=65 Identities=8% Similarity=0.200 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
...+.|++.|+.-......+++..|.++ ...+.++++.+....+|-.+||.++|.+.+++|+.|.
T Consensus 118 ~~~l~gig~g~~~~~~~~l~~~~f~~~~-~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~ 182 (500)
T PRK09584 118 GMATIAVGNGLFKANPSSLLSTCYEKDD-PRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVA 182 (500)
T ss_pred HHHHHHHhhhcccCCHHHHHHHhcCCCc-hhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 3455677777666555567777776443 2334577888899999999999999999999987765
No 43
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=94.48 E-value=0.068 Score=37.90 Aligned_cols=42 Identities=10% Similarity=-0.034 Sum_probs=35.2
Q ss_pred hcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC-ccch
Q psy16969 31 DSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS-MPYS 72 (77)
Q Consensus 31 D~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig-f~~~ 72 (77)
|.-.....|.++++.+...+++..+||.++|.+++..| .+++
T Consensus 355 ~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~ 397 (405)
T TIGR00891 355 EYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTA 397 (405)
T ss_pred hhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 33345568999999999999999999999999999999 5543
No 44
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=94.37 E-value=0.13 Score=38.09 Aligned_cols=36 Identities=14% Similarity=0.022 Sum_probs=32.7
Q ss_pred CcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 36 AHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 36 ~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
...|.++++.|.+..++..+||.++|.+++..|...
T Consensus 346 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~ 381 (402)
T TIGR00897 346 KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIG 381 (402)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 368999999999999999999999999999988554
No 45
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=94.37 E-value=0.047 Score=45.77 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=49.8
Q ss_pred ccchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 3 GLIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 3 ~li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
.++.-.++.|++-++.-......+.+++ .....+.+.++.+.+.++|..+||.++|.++...|..+.
T Consensus 110 ~l~~~~~l~gi~~a~~~p~~~a~l~~~~---~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~ 176 (1140)
T PRK06814 110 LLFAALFLMGIHSALFGPIKYSILPDHL---NKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVIL 176 (1140)
T ss_pred HHHHHHHHHHHHHHhhchHHHHhhHhhc---CccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444556666666665555444555555 445688999999999999999999999999998886654
No 46
>PRK12382 putative transporter; Provisional
Probab=94.34 E-value=0.083 Score=38.42 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=42.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 10 GLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 10 ~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
+.|++.+...++.. +...|.-.....|.+.++..+..++|..+||.+++.+.+.+|+.+
T Consensus 121 l~G~~~~~~~~~~~---~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~ 179 (392)
T PRK12382 121 ILGFGESQLLTGAL---TWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAA 179 (392)
T ss_pred HHHHHHHHHHHHHH---HHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHH
Confidence 44555554444433 333344445567889999999999999999999999999888654
No 47
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=94.30 E-value=0.047 Score=40.14 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=43.0
Q ss_pred HHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 15 IGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 15 ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
.+...++..|....+++.+ ...-|..|++.....++|+.+||.++|.+.+.+|..+
T Consensus 104 ~~~~~~~~~p~~~al~~~~-~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~ 159 (382)
T TIGR00902 104 FALFFSAGMPIGDALANTW-QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQN 159 (382)
T ss_pred HHHHHccchhHHHHHHHHH-HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence 4455555667766666543 3455778899999999999999999999999988654
No 48
>PRK10091 MFS transport protein AraJ; Provisional
Probab=94.19 E-value=0.081 Score=38.77 Aligned_cols=63 Identities=16% Similarity=0.127 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
-.++.|++.|..-....-...+..|. ...+.+.++.....+++..+||.+++.+.+.+|..|.
T Consensus 97 ~r~l~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~ 159 (382)
T PRK10091 97 GRLVSGFPHGAFFGVGAIVLSKIIKP---GKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYT 159 (382)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCh---HHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHH
Confidence 34555666555433222233444433 3467788899999999999999999999998887664
No 49
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=94.07 E-value=0.066 Score=41.22 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=47.9
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
++.--++.|++.+.........+.+.. .....-|.+.++......+|..+||.++|.+.+.+|..|.
T Consensus 97 li~~r~l~G~g~~~~~~~~~~~l~~~~--~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~ 163 (495)
T PRK14995 97 LIATRALLAIGAAMIVPATLAGIRATF--TEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSV 163 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH
Confidence 444456677777765554444443332 1234567889999999999999999999999999987764
No 50
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=94.04 E-value=0.046 Score=40.06 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=37.1
Q ss_pred HHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 15 IGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 15 ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
+|...+...|....+++.. ....+..++..+..-++|+.+||.++|.+.+.+|..+.
T Consensus 104 ~g~~~~~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~ 160 (382)
T PRK11128 104 FNLFFSPLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAI 160 (382)
T ss_pred HHHHHcccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHH
Confidence 3444444445433333221 12245667777888899999999999999999887643
No 51
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=94.03 E-value=0.04 Score=37.66 Aligned_cols=63 Identities=24% Similarity=0.235 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
-.++.|++.+...++....+.+..+ ....+.++++.+...++|..+||.+++.+.+..+.++.
T Consensus 93 ~~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 155 (352)
T cd06174 93 GRFLLGLGGGALYPAAAALIAEWFP---PKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWL 155 (352)
T ss_pred HHHHHHcccccccHhHHHHHHHhCC---ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3455666777777665555555554 35678899999999999999999999999998775543
No 52
>PRK11663 regulatory protein UhpC; Provisional
Probab=93.97 E-value=0.069 Score=40.14 Aligned_cols=62 Identities=18% Similarity=0.092 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
++.|+..|..-.+....+.+.++ ....|.+.++.+....+|..+||.++|.+.+.+|..|..
T Consensus 119 ~l~g~~~g~~~~~~~~~~~~~~~---~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f 180 (434)
T PRK11663 119 VLNAFFQGWGWPVCAKLLTAWYS---RTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGM 180 (434)
T ss_pred HHHHHHHHccchHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 34566666544443334444443 345789999999999999999999999999998876653
No 53
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=93.97 E-value=0.086 Score=39.30 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=44.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhc
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ 66 (77)
++.|++-++...+....+.++++. ...+.+.++.+...+++..+||.++|.+++.
T Consensus 96 ~l~G~~~a~~~pa~~a~i~~~~~~---~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 96 GLVGIGAAAYSPAKYGILTELLPG---EKLVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777666666777753 4689999999999999999999999999874
No 54
>PRK15011 sugar efflux transporter B; Provisional
Probab=93.94 E-value=0.13 Score=37.94 Aligned_cols=36 Identities=8% Similarity=-0.007 Sum_probs=32.4
Q ss_pred cchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 37 HYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 37 ~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
..|.+.++++....+|..+||.++|.+.+.+|+++.
T Consensus 337 ~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~ 372 (393)
T PRK15011 337 QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAV 372 (393)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 479999999999999999999999999999887654
No 55
>TIGR00893 2A0114 d-galactonate transporter.
Probab=93.84 E-value=0.1 Score=36.06 Aligned_cols=45 Identities=13% Similarity=0.052 Sum_probs=36.5
Q ss_pred HHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC-ccch
Q psy16969 28 SVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS-MPYS 72 (77)
Q Consensus 28 ~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig-f~~~ 72 (77)
...|.-.....|.++++.+....+|..+||.+.|.+.+..| ..+.
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~ 380 (399)
T TIGR00893 335 LISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGA 380 (399)
T ss_pred HHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHH
Confidence 33344445567999999999999999999999999999988 5543
No 56
>PRK10054 putative transporter; Provisional
Probab=93.70 E-value=0.13 Score=38.39 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=29.9
Q ss_pred HHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 26 LASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 26 la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
+.+.++.+.. |..|+..+ ...+|.++||.++|.+.+.+|..+
T Consensus 323 ~~~~~p~~~~---~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~ 364 (395)
T PRK10054 323 IDHIAPPGMK---ASYFSAQS-LGWLGAAINPLVSGVILTTLPPWS 364 (395)
T ss_pred HHHhCCcccc---eehHhHHH-HHHHHHHHHHHHHHHHHHHcChhh
Confidence 4455555444 44466655 455899999999999999998653
No 57
>PRK11010 ampG muropeptide transporter; Validated
Probab=93.55 E-value=0.19 Score=39.10 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=44.2
Q ss_pred HHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 12 GLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 12 G~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
.+..|+.-++..+.+.++++.+.. |+.|++.|....+|..++|.++|.+++.+|.+.
T Consensus 327 ~~~~g~~~~~~~a~~~~l~~~~~~---~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~ 383 (491)
T PRK11010 327 NLCGGMGTAAFVALLMTLCNKSFS---ATQFALLSALSAVGRVYVGPVAGWFVEAHGWPT 383 (491)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 334455556667777777765543 788999999999999998889999999988654
No 58
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=93.55 E-value=0.18 Score=39.24 Aligned_cols=60 Identities=15% Similarity=0.157 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCcc
Q psy16969 8 HLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMP 70 (77)
Q Consensus 8 ~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~ 70 (77)
..+.++..++.-.+++-.+.+++ ..+.-|+.||+.+...++|..+|+.+||.+.+.+|.+
T Consensus 358 ~~l~~~~~g~~~~~~~~~~~~~~---p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~ 417 (468)
T TIGR00788 358 SIIAEVLAQLKFMPFLVLLARLC---PSGCESSVFALLASILHLGSSVSGFLGVLLMETIGIT 417 (468)
T ss_pred hHHHHHHHHHHHccHHHHHHHhC---CCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34445666666655555555555 5667799999999999999999999999999999943
No 59
>PF13347 MFS_2: MFS/sugar transport protein
Probab=93.53 E-value=0.037 Score=41.39 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=60.6
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcC----CCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh-ccc
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSR----HTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR-QQS 76 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r----~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~-~~~ 76 (77)
+++..++.|++.|..-+...+.+++++|.. +...-|..|+..+.+.-++.++++.+.|.+.+..|+.... .|+
T Consensus 318 ~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~~~~~~q~ 395 (428)
T PF13347_consen 318 VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYDANAAVQS 395 (428)
T ss_pred HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcCCCcCcCC
Confidence 345667788888888877778899999843 3456899999999999999999999999999999998776 554
No 60
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=93.45 E-value=0.17 Score=36.80 Aligned_cols=55 Identities=16% Similarity=-0.018 Sum_probs=39.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhcc
Q psy16969 10 GLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDL 67 (77)
Q Consensus 10 ~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~i 67 (77)
++|+..+...+.....+.+.+ .....|.+.++++....+|..+||.++|.+.+..
T Consensus 317 ~~g~~~~~~~~~~~~~~~~~~---p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 371 (406)
T PRK11551 317 AAGLFVVGGQSVLYALAPLFY---PTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG 371 (406)
T ss_pred HHHHHHHhHHHHHHHHHHHHc---chhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence 344444444444334444444 4455799999999999999999999999998764
No 61
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=93.35 E-value=0.17 Score=37.81 Aligned_cols=61 Identities=10% Similarity=0.134 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
..++.|++.+..-++..-.+...++ ..++.+.++....+++|..+||.++|.+.+.+|...
T Consensus 311 ~~~l~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~ 371 (394)
T PRK10213 311 VAIIWGLTFALVPVGWSTWITRSLA----DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTS 371 (394)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhh
Confidence 3455566665555443324444444 236677777778889999999999999999888643
No 62
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=93.32 E-value=0.11 Score=39.19 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=45.5
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
++.--++.|++.+...+. ....+.|......-+...++.+....++..+||.+++.+.+.+|..|.
T Consensus 107 l~~~r~l~Gi~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~ 172 (413)
T PRK15403 107 FLIARFIQGTSICFIATV---GYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVL 172 (413)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 444556667666543222 123444544445567789999999999999999999999988776554
No 63
>TIGR00895 2A0115 benzoate transport.
Probab=93.07 E-value=0.18 Score=35.42 Aligned_cols=55 Identities=16% Similarity=-0.008 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhh
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKI 64 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv 64 (77)
..++.|+..+...+.....+.+.+ .....|.++++.+....+|..+||.++|.+.
T Consensus 344 ~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ll 398 (398)
T TIGR00895 344 LGAIAGFFVNGGQSGLYALMALFY---PTAIRATGVGWAIGIGRLGAIIGPILAGYLL 398 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHHHHHHHHhHHhcC
Confidence 345666666666655444444444 5556789999999999999999999999763
No 64
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=93.06 E-value=0.18 Score=37.06 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=50.2
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhc
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ 66 (77)
.++..+++|.+.++.+++.-|.++.+-|.+. ....-.+.+.++++|-.+||++++.+..+
T Consensus 13 ~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~---~~~~l~~~~~~~~~G~~~gP~i~~~~i~~ 72 (310)
T TIGR01272 13 FLGALFVLASGLTILQVAANPYVSILGPIET---AASRLALTQAFNKLGTTVAPLFGGSLILS 72 (310)
T ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHCCcch---HHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 3567889999999999999998888875443 55667889999999999999999998854
No 65
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=92.85 E-value=0.12 Score=36.13 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHH-HHHHHHHHHhhcccchhhhhhccC
Q psy16969 8 HLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYAL-QQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 8 ~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI-~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
.++.|+..+...++....+.++++.++ .|.++++ +++...+|-.+||.++|.+.+..|
T Consensus 319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 319 VLGLALIGGMYTGPMGSFLPELFPTEV---RYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhCCccc---eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 445666666776666666667765443 3445554 456677888899999999999888
No 66
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=92.78 E-value=0.15 Score=38.63 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=49.4
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhc
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ 66 (77)
++...++.|++.|+.+++.-|....+.+.++ -+..-++.+..+++|-.+||.+++.+...
T Consensus 97 ~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 97 FLVGLFILTAGLGFLETAANPYILVMGPEST---ATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred HHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455678899999999998888888775544 45678899999999999999999988754
No 67
>PRK03893 putative sialic acid transporter; Provisional
Probab=92.65 E-value=0.14 Score=38.40 Aligned_cols=65 Identities=8% Similarity=-0.031 Sum_probs=48.7
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
+.-.++.|++.+.........+.+..+. ..-|.+.++.+....+|..+||.+++.+.+.+|..|.
T Consensus 112 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~---~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~ 176 (496)
T PRK03893 112 FIARLVIGMGMAGEYGSSATYVIESWPK---HLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRAL 176 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Confidence 3445667777777777655555555543 3457888999999999999999999999998876654
No 68
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=92.61 E-value=0.19 Score=37.16 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=46.1
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhc
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ 66 (77)
++.+.++.|++.|..-.+..... .+.-....-|.+.++.+....+|.++||.+.|.+.++
T Consensus 351 ~~~~~~l~g~g~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 351 IALPQFIRGFGMGCFFMPLTTIA---LSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888776644443 3333445678999999999999999999999999874
No 69
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=92.54 E-value=0.21 Score=36.28 Aligned_cols=62 Identities=11% Similarity=0.151 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 8 HLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 8 ~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
-++.|++.+.........+.+..| ....+.+.++.+...+++..+||.+++.+.+.+|..|.
T Consensus 98 ~~l~g~~~~~~~~~~~~~i~~~~~---~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~ 159 (392)
T PRK10473 98 RFLQGIGAGCCYVVAFAILRDTLD---DRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSL 159 (392)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHH
Confidence 345566666666654445555554 44577888889999999999999999999888876553
No 70
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=92.49 E-value=0.17 Score=37.09 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=28.5
Q ss_pred hhHHHH-HHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 39 GSIYAL-QQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 39 GsvyAI-~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
+..++. ++.+..+|..+||.++|.+.+.+|+..+
T Consensus 342 at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~ 376 (396)
T TIGR00882 342 ATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGA 376 (396)
T ss_pred EEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 455665 6789999999999999999999997654
No 71
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=91.84 E-value=0.19 Score=42.18 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhh
Q psy16969 8 HLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIM 65 (77)
Q Consensus 8 ~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~ 65 (77)
.+++|++.++.-.+ ..+.+.+.-....+|.++++.|+..+++..+||.++|.+.+
T Consensus 341 ~~~~g~~~~~~~~~---~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 341 LFGLAAAGGLYIVP---LFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHHHHHHHhHHH---HHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666655554 44455555577889999999999999999999999999874
No 72
>PRK15011 sugar efflux transporter B; Provisional
Probab=91.83 E-value=0.53 Score=34.74 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=39.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHhc--CCCCcc-hhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 11 LGLGIGILDSALVPLLASVVDS--RHTAHY-GSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 11 lG~~ig~vds~~lP~la~lvD~--r~~~~Y-GsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
+++..+..-++..|....++.. ++.+.. +..-++.+...++|..+||.++|.+.+.+|..+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~ 175 (393)
T PRK15011 111 VGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVM 175 (393)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHH
Confidence 3444444445555665554321 112222 3333688889999999999999999998887654
No 73
>PRK10054 putative transporter; Provisional
Probab=91.83 E-value=0.31 Score=36.34 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=34.1
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 27 ASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 27 a~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
++..|.-.....|.++++.+...++|..+||.++|.+.+ .|..+
T Consensus 119 ~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~ 162 (395)
T PRK10054 119 AWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINL 162 (395)
T ss_pred HHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCc
Confidence 334455455568899999999999999999999999875 55443
No 74
>KOG2615|consensus
Probab=91.78 E-value=0.063 Score=44.11 Aligned_cols=41 Identities=20% Similarity=0.097 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhh
Q psy16969 25 LLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIM 65 (77)
Q Consensus 25 ~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~ 65 (77)
..+.+-|+-..-..+-+.+..++++++|+.+||++||.|+.
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 44555565555667788899999999999999999999998
No 75
>PRK11043 putative transporter; Provisional
Probab=91.73 E-value=0.26 Score=35.97 Aligned_cols=63 Identities=10% Similarity=0.050 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
-.++.|++.+...........+.+ .....+.+++..+....++..+||.++|.+.+.+|+.+.
T Consensus 100 ~~~l~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~ 162 (401)
T PRK11043 100 LRFVQAVGVCSAAVIWQALVIDRY---PAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAI 162 (401)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 344556655544433223333433 333456778888888899999999999999999887653
No 76
>PRK09528 lacY galactoside permease; Reviewed
Probab=91.62 E-value=0.19 Score=37.25 Aligned_cols=46 Identities=11% Similarity=-0.011 Sum_probs=33.1
Q ss_pred HHHHhcCCCCcchhHHHH-HHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 27 ASVVDSRHTAHYGSIYAL-QQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 27 a~lvD~r~~~~YGsvyAI-~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
.+..|.-+....+..|.. ++....+|..+||.++|.+.+.+|+.++
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~ 384 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGT 384 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHH
Confidence 444443334445566655 6788889999999999999999986543
No 77
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=91.59 E-value=0.29 Score=34.99 Aligned_cols=66 Identities=21% Similarity=0.228 Sum_probs=47.1
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccch---hhhhhccCccch
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVV---PTKIMDLSMPYS 72 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~---G~Lv~~igf~~~ 72 (77)
++.-.++.|++.|.........+++..+ ...-|.+.++.+...++|..+||.++ +.+.+..|..|.
T Consensus 130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~ 198 (481)
T TIGR00879 130 LIVGRVLLGIGVGIASALVPMYLSEIAP---KALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIP 198 (481)
T ss_pred HHHHHHHHHhhhhHHHhHHHHHHHccCC---hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHH
Confidence 4455667788888777665455555544 34457788899999999999999999 766666665543
No 78
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=91.21 E-value=0.37 Score=35.35 Aligned_cols=63 Identities=19% Similarity=0.122 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
--++.|++.+.........+.+..+.++ -+.+.++......++..+||.+++.+.+..|..|.
T Consensus 107 ~~~l~G~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~ 169 (406)
T PRK15402 107 LRFLQGIGLCFIGAVGYAAIQESFEEAD---AIKITALMANVALLAPLLGPLVGAALIHVLPWRGM 169 (406)
T ss_pred HHHHHHhHhhhHHHHHHHHHHHHhChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHH
Confidence 3455566666665555555666665443 23555677777788999999999999998876654
No 79
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=90.88 E-value=0.28 Score=40.66 Aligned_cols=59 Identities=12% Similarity=0.047 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhc
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ 66 (77)
++-.++.|++.++...+.. +.+.|.-.....|.+.++.....++|..+||.++|.+.+.
T Consensus 107 ~~~r~l~G~~~~~~~~~~~---~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 107 FAVTFLLGAQSAIYSPAKY---GIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHhhchHHH---hhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555666666555533 3444444556789999999999999999999999999886
No 80
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=90.78 E-value=0.37 Score=37.16 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=44.5
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhc
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ 66 (77)
....++.|++.|+.-++.... ..+.-.....|.+.++.++...+|.++|+.++|.+.++
T Consensus 355 ~~~~~l~G~g~g~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 355 WGLMALLGFSAASALLASTSA---IMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHhHHHHHHHHHHH---HHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888776553333 33333455678899999999999999999999999764
No 81
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=90.76 E-value=0.36 Score=35.85 Aligned_cols=69 Identities=12% Similarity=0.116 Sum_probs=61.4
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
+.+-++++++|.|..-+.+-|..++..|..+....-+.|-++-.+.++|-.+++...+.+-++.|+.+.
T Consensus 36 ~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~ 104 (372)
T PF00854_consen 36 FYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLG 104 (372)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHH
T ss_pred HHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhh
Confidence 556788999999999999999999999977788899999999999999999999999999988887654
No 82
>PRK11663 regulatory protein UhpC; Provisional
Probab=90.62 E-value=0.75 Score=34.60 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=37.8
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 29 VVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 29 lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
..|..+...+|.+-++.+.+..+|..+||.+.|.+.+..|.+.+
T Consensus 362 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~ 405 (434)
T PRK11663 362 AAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGF 405 (434)
T ss_pred HHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHH
Confidence 34555677899999999999999999999999999999886543
No 83
>PRK03893 putative sialic acid transporter; Provisional
Probab=90.51 E-value=0.18 Score=37.72 Aligned_cols=43 Identities=9% Similarity=-0.036 Sum_probs=35.4
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 30 VDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 30 vD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
.|.-....-|+++++++....+|..+||.++|.+.+.+|..++
T Consensus 392 ~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~ 434 (496)
T PRK03893 392 GGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTA 434 (496)
T ss_pred HhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHH
Confidence 3444455678889999999999999999999999999987654
No 84
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=90.49 E-value=0.42 Score=34.72 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=48.0
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
++.-.++.|++.+...+.....+.+.++ ....|.+.++.+....+|-.++|.+++.+.+..+..+
T Consensus 106 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 170 (406)
T PRK11551 106 LLVARLLTGVGLGGALPNLIALTSEAVG---PRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRH 170 (406)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHH
Confidence 3444567778777776665555555553 3456888999999999999999999998888776554
No 85
>PRK11462 putative transporter; Provisional
Probab=90.33 E-value=0.97 Score=34.93 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=43.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhc--CCCC--cchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDS--RHTA--HYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~--r~~~--~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
++.|++.+..-...--++++.+|- .+++ .=|..|+....+.=+|.++|+.++|.+.+..|+...
T Consensus 326 ~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~~~ 393 (460)
T PRK11462 326 FVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDAA 393 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 344554444333223468888882 2222 235567777788889999999999999999999763
No 86
>PRK03699 putative transporter; Provisional
Probab=90.30 E-value=0.84 Score=33.59 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=30.4
Q ss_pred cchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 37 HYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 37 ~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
..+..++....+..+|..+||.+.|.+.+..|..++
T Consensus 326 ~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~ 361 (394)
T PRK03699 326 ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAA 361 (394)
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhh
Confidence 356677888888999999999999999999887654
No 87
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=90.04 E-value=0.7 Score=32.71 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 42 YALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 42 yAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
+++.....++|..+||.++|.+++.+|..|.
T Consensus 127 ~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~ 157 (375)
T TIGR00899 127 SSVMRAQISLAWVIGPPLAFWLALGFGFTVM 157 (375)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHhcccHHH
Confidence 6777778899999999999999998887654
No 88
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=90.03 E-value=0.45 Score=38.51 Aligned_cols=64 Identities=16% Similarity=0.092 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
-+++.|++.....+++--.+-..+ ....-|-+++++++.+..++.+|..+.|.+++.+|.+.+.
T Consensus 313 ~l~l~G~~~~~~~~~~~t~~Q~~~---P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al 376 (524)
T PF05977_consen 313 ALFLAGAAWIIANSSLNTLVQLSV---PDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTAL 376 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC---CHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 345566666666655333333333 3456899999999999999999999999999999988654
No 89
>PRK12307 putative sialic acid transporter; Provisional
Probab=89.74 E-value=0.46 Score=34.74 Aligned_cols=64 Identities=6% Similarity=0.033 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 6 GPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
.--++.|++.|...+.....+.+..+ ....|.+.++....+++|..++|.+.+.+.+.+|..|.
T Consensus 111 ~~r~l~G~g~g~~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~ 174 (426)
T PRK12307 111 LSRFIVGMGMAGEYACASTYAVESWP---KHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAA 174 (426)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhCC---HhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHH
Confidence 33456777777666664444444444 33457778888899999999999999999888776554
No 90
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=89.40 E-value=0.59 Score=33.52 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=29.0
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 35 TAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 35 ~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
....|.++++.+....++..+||.++|.+.+..|
T Consensus 317 ~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 317 AAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456888888888888888999999999999887
No 91
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=89.30 E-value=0.31 Score=37.24 Aligned_cols=59 Identities=12% Similarity=-0.026 Sum_probs=41.8
Q ss_pred HHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 11 LGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 11 lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
.|++.|..-.+..-.+...++ ..-|.+.++.+....+|..+||.++|.+.+.+|+.|..
T Consensus 118 ~G~~~~~~~~~~~~~~~~~~~----~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f 176 (455)
T TIGR00892 118 TGLGLAFNFQPSLTMLGKYFY----RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSF 176 (455)
T ss_pred HHhcchhhhhHHHHHHHHHHH----hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHH
Confidence 355555433333333333332 34589999999999999999999999999999887654
No 92
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=89.06 E-value=0.67 Score=33.72 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
..++.|++.+........... |.......+...++.+....++..+||.++|.+.+..|..+.
T Consensus 102 ~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~ 164 (394)
T PRK11652 102 ASAIQGLGTGVGGVMARTLPR---DLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRAC 164 (394)
T ss_pred HHHHHHhhhhHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHH
Confidence 344556655543322212222 322334577788899999999999999999999998876543
No 93
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=88.99 E-value=0.087 Score=36.64 Aligned_cols=66 Identities=9% Similarity=-0.072 Sum_probs=47.6
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcc-cchhhhhhccCccch
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGK-FVVPTKIMDLSMPYS 72 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP-~~~G~Lv~~igf~~~ 72 (77)
++.-.++.|++.+...+.....+.+.++.+ ..|.+.++.+....+|..+|| ++++.+.+..+..|.
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 152 (379)
T TIGR00881 86 MAALWALNGIFQGMGWPPCGRTVTKWFSRS---ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWV 152 (379)
T ss_pred HHHHHHHHHhhccccCCchHHHHHHhcCHh---hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhH
Confidence 344556677777777777666666666543 456777888999999999999 688888777765543
No 94
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=88.95 E-value=0.84 Score=34.28 Aligned_cols=64 Identities=6% Similarity=0.010 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCC-CCcchhHHHHHHHHHHHHHhhcccchhhhhhcc-Cccch
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDSRH-TAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDL-SMPYS 72 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~r~-~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~i-gf~~~ 72 (77)
.+..+-.|+..+...|.....+..+- ...-|.+.++.+....+|..+||.+++.+.+.. |..+.
T Consensus 135 ~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~ 200 (465)
T TIGR00894 135 VFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI 200 (465)
T ss_pred HHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence 34455566666666666555544443 456789999999999999999999999999884 76654
No 95
>PRK03633 putative MFS family transporter protein; Provisional
Probab=88.73 E-value=0.71 Score=33.75 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=40.2
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhc
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ 66 (77)
++-.++.|++.+..-... ...+.|.......|.+.++.+..+.+|..+||.+++.+.+.
T Consensus 98 ~~~~~l~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 98 LAWRFVAGIGCAMIWVVV---ESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 334455566665543222 23333433344579999999999999999999999999875
No 96
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=88.30 E-value=1.3 Score=32.52 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 6 GPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
...++.|++.+...+... ....+.. ....|.+.++.+....++..+||.++|.+.+..+
T Consensus 314 ~~~~~~g~g~~~~~~~~~---~~~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 314 AGLSLYAFGIGLANAGLY---RLTLFSS-DVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG 372 (406)
T ss_pred HHHHHHHHHHHHHhhhHH---HHHhhhc-cccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 345566677766654432 2222222 2568999999999999999999999998876654
No 97
>TIGR00901 2A0125 AmpG-related permease.
Probab=88.01 E-value=0.97 Score=32.34 Aligned_cols=56 Identities=9% Similarity=-0.086 Sum_probs=39.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 10 GLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 10 ~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
++++..+..|.+.-..+.+.+|. ...|.+-++....+++|..+||.+++.+.+.+|
T Consensus 92 ~~~~~~~~~~~~~~a~~~~~~~~---~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 92 LIAFFSATQDIALDAWRLEILSD---EELGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCH---hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33444444444444445555543 335677788899999999999999999998887
No 98
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=87.78 E-value=1 Score=32.30 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=42.3
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
+..-++.|++.+...+.......+. .....|.+.++.+.+..+|..+||.+++.+++..+
T Consensus 91 ~~~~~~~g~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~ 150 (355)
T TIGR00896 91 FAGTALIGVGIAIINVLLPSLIKRD----FPQRVGLMTGLYSMALMGGAALAAAATVPLAQHSG 150 (355)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHh----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444667787777665433233222 22357888999999999999999999999988764
No 99
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=87.60 E-value=1.1 Score=31.00 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcc
Q psy16969 6 GPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGK 57 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP 57 (77)
...+++|++.+.........+.+.+ .....|.++++.+...+++..+||
T Consensus 304 ~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 304 IALFLIGFGFGIVFPILFSLIQELV---PPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHCCC---HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3556678877777666544444444 446789999999999999999998
No 100
>KOG4686|consensus
Probab=87.51 E-value=0.67 Score=37.91 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 6 GPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
..++++|++-.+.-.++-|..+.+|+. ..-|++|+-.+-.-.+|+++=|++.|.+++.=|
T Consensus 357 ~~m~~lGLsysllAcslWP~va~~vpE---~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 357 TSMTFLGLSYSLLACSLWPCVASLVPE---EQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhCCH---HHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 458899999999999999999999953 344555555555566889999999999998755
No 101
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=86.96 E-value=0.73 Score=39.11 Aligned_cols=63 Identities=11% Similarity=-0.022 Sum_probs=47.2
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCc
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSM 69 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf 69 (77)
+++-.++.|++.|..-... ..++.|.-.....|.++++.+..+++|..++|.++..++..+|.
T Consensus 258 llv~R~l~G~g~g~~~p~~---~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~ 320 (742)
T TIGR01299 258 FLFCRLLSGFGIGGAIPIV---FSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW 320 (742)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445567788887766543 33444444556789999999999999999999999988877764
No 102
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=86.67 E-value=0.9 Score=34.10 Aligned_cols=57 Identities=12% Similarity=0.051 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhh
Q psy16969 6 GPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIM 65 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~ 65 (77)
.--++.|++.|..-....-.+.+..+ ....|.+.++.+...++|..+||.+++.+.+
T Consensus 101 ~~r~l~G~~~~~~~~~~~~~~~~~~~---~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 157 (412)
T TIGR02332 101 LLRILVGIAEAGFLPGILLYLTFWFP---AYFRARANALFMIAMPVTMALGLILSGYILA 157 (412)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455666666543332223344443 2346788999999999999999999999875
No 103
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=86.53 E-value=1.7 Score=31.29 Aligned_cols=43 Identities=9% Similarity=-0.096 Sum_probs=34.4
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 30 VDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 30 vD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
.|.......|.+.++.+...++|..+||.++|.+.+.+|..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 174 (408)
T PRK09874 132 ATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPV 174 (408)
T ss_pred HHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 3333444568899999999999999999999999998876553
No 104
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=86.51 E-value=2.1 Score=31.63 Aligned_cols=54 Identities=19% Similarity=0.162 Sum_probs=36.2
Q ss_pred HHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 15 IGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 15 ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
.|+.-....+.+-.++..+.. ++.++++....+++..+++.++|.+++.+|.++
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~ 370 (402)
T PRK11902 317 GGMGTAAFVALLMALCNRSFS---ATQYALLSALASVGRVYVGPTSGYLVEAYGWPG 370 (402)
T ss_pred HHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 344444444555555544433 456778777788888876778999999999764
No 105
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=86.50 E-value=1.6 Score=31.71 Aligned_cols=61 Identities=13% Similarity=0.012 Sum_probs=41.1
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCc
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSM 69 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf 69 (77)
+.+.++.|++.++.-..+.....+.++ ...|.+.++.+....+|..+||.++|.+..+-.+
T Consensus 303 ~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~ 363 (394)
T PRK11652 303 LVPAALFFFGAGMLFPLATSGAMEPFP----YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQF 363 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc----ccchHHHHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence 345566667777655443333333332 3458899999999999999999999888765433
No 106
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=86.39 E-value=0.87 Score=34.20 Aligned_cols=45 Identities=7% Similarity=-0.096 Sum_probs=35.6
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHH-HhhcccchhhhhhccCccchh
Q psy16969 29 VVDSRHTAHYGSIYALQQTAVSLA-YSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 29 lvD~r~~~~YGsvyAI~~~a~slg-~~iGP~~~G~Lv~~igf~~~~ 73 (77)
..|.-.....|.+.++.+....++ ..+||.+.|.+.+..|.+++.
T Consensus 370 ~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~ 415 (438)
T TIGR00712 370 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 415 (438)
T ss_pred HHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHH
Confidence 345445667899999999887765 678999999999999876653
No 107
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=86.10 E-value=0.85 Score=36.89 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=40.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhc---CCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 10 GLGLGIGILDSALVPLLASVVDS---RHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 10 ~lG~~ig~vds~~lP~la~lvD~---r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
.++++.|..-+..-..++++.+. |..+.++..|...| +|-.++|.+.|.+.+..|..+.
T Consensus 109 li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~n----lG~~iap~l~g~L~~~~Gw~~~ 170 (493)
T PRK15462 109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGN----VGSIIAPIACGYAQEEYSWAMG 170 (493)
T ss_pred HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHH----HHHHHHHHHHHHHHhhhChHHH
Confidence 34455555544444567888764 34555666666655 5889999999999998887664
No 108
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=85.87 E-value=0.82 Score=33.86 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=33.8
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHHH-hhcccchhhhhhccCcc
Q psy16969 27 ASVVDSRHTAHYGSIYALQQTAVSLAY-SLGKFVVPTKIMDLSMP 70 (77)
Q Consensus 27 a~lvD~r~~~~YGsvyAI~~~a~slg~-~iGP~~~G~Lv~~igf~ 70 (77)
....|.-.....|.+-++.+...++|. .+||.++|.+.+.+|..
T Consensus 128 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~ 172 (402)
T TIGR00897 128 VWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEM 172 (402)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH
Confidence 334443344567999999999999997 58999999999988853
No 109
>PRK10133 L-fucose transporter; Provisional
Probab=84.84 E-value=0.84 Score=34.96 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=43.1
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhh
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKI 64 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv 64 (77)
++.-.++.|++.|..++...+..++..+ ++... ..-++.+..+++|..+||.+++.+.
T Consensus 120 ll~~r~l~G~g~g~~~~~~~~~v~~~~~-~~~~~--~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 120 FLVGLFIIAAGLGCLETAANPFVTVLGP-ESSGH--FRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCC-hhhHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577899999999998888876532 22222 2367789999999999999988765
No 110
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=84.54 E-value=1.8 Score=32.33 Aligned_cols=64 Identities=20% Similarity=0.119 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCCCC-cchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 6 GPHLGLGLGIGILDSALVPLLASVVDSRHTA-HYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~lP~la~lvD~r~~~-~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
...++.|++.++...+....+.+ ..+.. ..|.+.++.|++-.++..+|..+.+.+ ..+|..++.
T Consensus 298 ~~~~~~G~~~g~~~~~~~~~~q~---~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 362 (393)
T PRK11195 298 PLLILIGALGGFFVVPMNALLQH---RGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVA 362 (393)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHh---hCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHH
Confidence 44557788888877665444433 22222 269999999999999999999999854 677876653
No 111
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=84.29 E-value=1.2 Score=36.38 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=49.5
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhc
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ 66 (77)
+.-++++|.++|..||+.-|.+..+-|.+. --.-=.+.+..+++|-.+||.+++.++..
T Consensus 108 L~~lFila~Gi~~LetaaNp~v~~lg~~~~---a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 108 LVALFILASGIGLLETAANPYVTLLGKPES---AAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred HHHHHHHHhhhHHHHhccchHHHHhCCchh---HHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 345789999999999999999999987542 22345688999999999999999999985
No 112
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=84.15 E-value=1.5 Score=30.40 Aligned_cols=63 Identities=11% Similarity=-0.034 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
+.-.++.|++.|..-.+..+.+.+..+. .-|.+.++.+....+|..+++.+.+.+.+..|..|
T Consensus 95 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 157 (377)
T TIGR00890 95 YLTYGLASAGVGIAYGIALNTAVKWFPD----KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPA 157 (377)
T ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHcCc----ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHH
Confidence 3444567777777666666655554432 35888899999999998776656666666665544
No 113
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=83.80 E-value=2.3 Score=35.46 Aligned_cols=57 Identities=12% Similarity=0.004 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhh
Q psy16969 6 GPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIM 65 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~ 65 (77)
+..+++|++.++...+ ..+.+.+.-....-|.++++.+...+++..+++.+++.+..
T Consensus 327 ~~~~~~g~~~~~~~~~---~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 327 VLFFLFGFSAGLFIVP---LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHHHHhhHH---HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666665544 34444455566678999999999999999999988887755
No 114
>KOG3764|consensus
Probab=83.18 E-value=1.6 Score=36.24 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=46.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCcc
Q psy16969 10 GLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMP 70 (77)
Q Consensus 10 ~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~ 70 (77)
.=|++-+..||+=+-++++.+. ++..-|.+-+|.-..-++|..+||.+||.+=+..|..
T Consensus 168 LQgvgsA~~~tsglamlAd~f~--~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~ 226 (464)
T KOG3764|consen 168 LQGVGSAFADTSGLAMLADVFP--EDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKS 226 (464)
T ss_pred HhhhhHHHHHhhhHHHHHHHcc--cchhhhHHHHHHHHHHhccceecCCcccchHhhcCCc
Confidence 3478888999995555555442 3334599999999999999999999999999988864
No 115
>PRK12307 putative sialic acid transporter; Provisional
Probab=83.09 E-value=1.3 Score=32.37 Aligned_cols=42 Identities=7% Similarity=-0.092 Sum_probs=34.9
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 30 VDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 30 vD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
.|.-.....|.+.++.+...+++..+||.++|.+.+.+|.++
T Consensus 347 ~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 347 YDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred HHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 344455667888999998999999999999999999998765
No 116
>PRK09952 shikimate transporter; Provisional
Probab=82.66 E-value=2.3 Score=32.19 Aligned_cols=55 Identities=9% Similarity=0.071 Sum_probs=37.3
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHH-HHHHHHHHHhhcccchhhhhhcc
Q psy16969 10 GLGLGIGILDSALVPLLASVVDSRHTAHYGSIYAL-QQTAVSLAYSLGKFVVPTKIMDL 67 (77)
Q Consensus 10 ~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI-~~~a~slg~~iGP~~~G~Lv~~i 67 (77)
+.++..+..-+...+.+++++|.++ -++..++ +++...++-.++|.+.|.+++..
T Consensus 352 l~~~~~~~~~~~~~~~~~e~~p~~~---r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~ 407 (438)
T PRK09952 352 LANIAHDMVVCVQQPMFTEMFGASY---RYSGAGVGYQVASVVGGGFTPFIAAALVTYF 407 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcch---hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666666677888888754 2333333 34556688889999999998854
No 117
>PRK10133 L-fucose transporter; Provisional
Probab=82.65 E-value=3.8 Score=31.40 Aligned_cols=66 Identities=14% Similarity=-0.034 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchhc
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSRQ 74 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~~ 74 (77)
.++.+.+.+++.+...-+.+-.+-|..+.+. ...+....++.+++.++.+.+|.+++++|-++.+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~--~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~ 95 (438)
T PRK10133 30 LLCSLFFLWAVANNLNDILLPQFQQAFTLTN--FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGII 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 3455556666665544444444444445443 55678889999999999999999999999887653
No 118
>PRK09528 lacY galactoside permease; Reviewed
Probab=82.58 E-value=1 Score=33.32 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhh
Q psy16969 20 SALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIM 65 (77)
Q Consensus 20 s~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~ 65 (77)
.+..|......+.+ ....|..|++.+...++|.++||.++|.+.+
T Consensus 122 ~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 166 (420)
T PRK09528 122 LAGAGAIEAYIERV-SRRSGFEYGRARMWGSLGWALCAFIAGILFN 166 (420)
T ss_pred ccchhhhhhHHHHH-HhhccccchhhHHhhhHHHHHHHHHHHHHHh
Confidence 34445555555432 2245778888888899999999999999976
No 119
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=82.33 E-value=3.9 Score=30.91 Aligned_cols=45 Identities=9% Similarity=-0.044 Sum_probs=36.1
Q ss_pred HHHhcCCCCcchhHHHHHHHHHHHHHhh-cccchhhhhhccCccch
Q psy16969 28 SVVDSRHTAHYGSIYALQQTAVSLAYSL-GKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 28 ~lvD~r~~~~YGsvyAI~~~a~slg~~i-GP~~~G~Lv~~igf~~~ 72 (77)
..+|.......|++.++.+...-+|-++ ||.++|.+.+.+|..+.
T Consensus 371 ~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~ 416 (452)
T PRK11273 371 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 416 (452)
T ss_pred HHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHH
Confidence 3456667788999999999887777654 89999999999886554
No 120
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=82.18 E-value=4.7 Score=30.61 Aligned_cols=65 Identities=15% Similarity=0.011 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
.++.+-+..|+.+.-.-|.+..+-|..|.+ -.-.+....++.+++.++.+.+|.+.+++|-++.+
T Consensus 7 ~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s--~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~ 71 (410)
T TIGR00885 7 LITSLFALWGFANDITNPMVPQFQQAFTLT--AFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGI 71 (410)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 445555656655443335555555555544 23467788999999999999999999999987654
No 121
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=81.71 E-value=2 Score=32.21 Aligned_cols=40 Identities=8% Similarity=-0.003 Sum_probs=34.9
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC-ccchh
Q psy16969 34 HTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS-MPYSR 73 (77)
Q Consensus 34 ~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig-f~~~~ 73 (77)
.....|.++++.|....+|.++||.+.|.+++..| ..++.
T Consensus 363 ~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~ 403 (412)
T TIGR02332 363 SLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGL 403 (412)
T ss_pred chHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhH
Confidence 45578999999999999999999999999999886 66654
No 122
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=80.61 E-value=1.4 Score=32.21 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=34.3
Q ss_pred HHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhh
Q psy16969 12 GLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIM 65 (77)
Q Consensus 12 G~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~ 65 (77)
++-.|...+...|.....++... ...+..|++....-++|+++||.++|.+.+
T Consensus 106 ~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~ 158 (396)
T TIGR00882 106 GLYLGFVFSAGAGAIEAYIEKVS-RNSNFEYGKARMFGCVGWALCASIAGILFS 158 (396)
T ss_pred HHHHHHHhccchhhHHHHHHHhh-hhcccccchhhhhcccHHHHHHHHHhhhhc
Confidence 44456666666666665553321 112345666677778999999999998765
No 123
>PRK03699 putative transporter; Provisional
Probab=80.61 E-value=2.5 Score=31.08 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=44.5
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhh-ccCccch
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIM-DLSMPYS 72 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~-~igf~~~ 72 (77)
+...++.|++.|...+.....+.+..|.+ ..|...++.+..++++-.++|.+.+.+.. .+|..|.
T Consensus 99 ~~~~~l~G~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~ 164 (394)
T PRK03699 99 SIAMFVLGVVSGITMSIGTFLITHVYEGK---QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWV 164 (394)
T ss_pred HHHHHHHHHhhHhhccchhHHhhhhcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34455677777766665555566665443 45777788888899999999999888764 4555543
No 124
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=80.50 E-value=2 Score=30.65 Aligned_cols=42 Identities=14% Similarity=0.029 Sum_probs=35.6
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 30 VDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 30 vD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
.|.-.....|.+.++.+...++|..++|.+.|.+.+..|..+
T Consensus 409 ~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~ 450 (481)
T TIGR00879 409 SEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGG 450 (481)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 444456678999999999999999999999999999877654
No 125
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=78.45 E-value=3.3 Score=31.11 Aligned_cols=60 Identities=12% Similarity=-0.014 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhh-ccCcc
Q psy16969 8 HLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIM-DLSMP 70 (77)
Q Consensus 8 ~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~-~igf~ 70 (77)
.++.|+..|+...+.. ..+.|.-.....|.+.++.+....+|..++|.+.+.+.+ ..|..
T Consensus 125 ~~l~g~~~g~~~~~~~---~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~ 185 (438)
T TIGR00712 125 LFLNGWFQGMGWPPCG---RTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWH 185 (438)
T ss_pred HHHHHHHhhcchHHHH---HHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhH
Confidence 3445666565544433 333443344558999999999999999998877765443 34443
No 126
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=78.35 E-value=1.5 Score=36.00 Aligned_cols=60 Identities=7% Similarity=0.056 Sum_probs=42.6
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhcc
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDL 67 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~i 67 (77)
++-.++.|++.+..-+.....+.+.++ ...-+...++.+....+|..+||+++|.+.+.+
T Consensus 176 ~~~r~l~GiG~~~~~~~~~~~i~d~~~---~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~ 235 (633)
T TIGR00805 176 LVSQLLRGIGATPIFPLGISYIDDFAK---SKNSPLYIGILESIAVFGPAFGYLLGSFCLQIY 235 (633)
T ss_pred HHHHHHHhccCCcchhcCchhhhccCC---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 345566677766665554444555443 344566778899999999999999999998764
No 127
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=77.33 E-value=3.5 Score=30.99 Aligned_cols=62 Identities=13% Similarity=-0.003 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
--++.|++.+..-. ....+.|.-....-|.+-++.+.+.++|-.++|.+++.+++.+|..+.
T Consensus 85 ~R~l~G~g~~~~~~----~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~ 146 (368)
T TIGR00903 85 CQLLAALGQPFLLN----AFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLL 146 (368)
T ss_pred HHHHHHhHhHHHHH----HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH
Confidence 34456666664322 222223333345678999999999999999999999999998775543
No 128
>PRK10091 MFS transport protein AraJ; Provisional
Probab=77.09 E-value=6 Score=28.97 Aligned_cols=66 Identities=9% Similarity=0.030 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 6 GPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
...+..-+.++..+....|.+..+.+.-|.+. ...+..-.++.+++.++..+.|.+.|++|-++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~ 71 (382)
T PRK10091 6 LSLALGTFGLGMAEFGIMGVLTELAHDVGISI--PAAGHMISYYALGVVVGAPIIALFSSRYSLKHIL 71 (382)
T ss_pred HHHHHHHHHHHhhHHHHHhChHHHHHHcCCCH--HHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHH
Confidence 34444445555555555555555555444332 2245566788999999999999999999987654
No 129
>PRK11010 ampG muropeptide transporter; Validated
Probab=76.57 E-value=4.1 Score=31.79 Aligned_cols=59 Identities=12% Similarity=-0.028 Sum_probs=41.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhh-ccCcc
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIM-DLSMP 70 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~-~igf~ 70 (77)
++.++..+..|.+.--...+.+ .....|.+-++....+.+|..+||.+++.+.+ .+|..
T Consensus 115 ~l~~~~~a~~~i~~~a~~~~~~---~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr 174 (491)
T PRK11010 115 VVIAFCSASQDIVFDAWKTDVL---PAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQ 174 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 3445556666665433344444 44457888999999999999999999999998 45543
No 130
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=75.74 E-value=11 Score=28.49 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=34.0
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 27 ASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 27 a~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
.++.|. +.+ -...++....+.++++++.+++|.+.|++|-++.+
T Consensus 53 p~l~~~-g~s--~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l 96 (452)
T PRK11273 53 PYLVEQ-GFS--RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL 96 (452)
T ss_pred HHHHHc-CCC--HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhH
Confidence 344454 433 25677888999999999999999999999987654
No 131
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=75.55 E-value=3.8 Score=30.43 Aligned_cols=33 Identities=15% Similarity=-0.015 Sum_probs=28.8
Q ss_pred CcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 36 AHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 36 ~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
..-|.+++..+..-.++-.+||.+.|.+.+..|
T Consensus 325 ~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g 357 (393)
T PRK09705 325 AIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG 357 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356888998888888888899999999999887
No 132
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=75.40 E-value=6.7 Score=27.75 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=37.8
Q ss_pred hhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 17 ILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 17 ~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
...+...|.+..+.+..+.+ -...+....++.+++.++.++.|.++|++|-++.+
T Consensus 19 ~~~~~~~~~~p~~~~~~g~s--~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 73 (385)
T TIGR00710 19 LGIDMYLPAFPEIAADLSTP--ASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVL 73 (385)
T ss_pred HHHHHhcccHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH
Confidence 33344445555555444433 24566778889999999999999999999976543
No 133
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=73.70 E-value=8.1 Score=27.29 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=34.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhc
Q psy16969 8 HLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 8 ~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ 66 (77)
-++.|++.+. .++..+.+++.. ....-|.+.++......+|..+||.+++.+.+.
T Consensus 98 ~~~~g~~~~~-~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~ 152 (366)
T TIGR00886 98 RLFIGIAGGS-FASCMPWISFFF---PKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS 152 (366)
T ss_pred HHHHHHhchh-hHhHHHHHHHhc---CHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445555333 233344444444 444567888888888888888888888877763
No 134
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=73.08 E-value=5.4 Score=29.29 Aligned_cols=58 Identities=10% Similarity=0.088 Sum_probs=36.5
Q ss_pred HHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 15 IGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 15 ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
+|.-.+.+.|..-...-.+....-|.+=++.. .-.+|.+++|.+-|.+.+.+|..+++
T Consensus 240 ~g~~~s~i~P~~~s~a~~~~~~~~~~asai~~-~~~~Gg~i~P~l~G~lad~~g~~~a~ 297 (310)
T TIGR01272 240 LGLFNSIMFPTIFSLALNALGRHTSQGSGILC-LAIVGGAIVPLLQGSLADCLGIQLAF 297 (310)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH-HHHhcchHHHHHHHHHHHhccchHHH
Confidence 45556667777443332222222233445554 44588999999999999999987664
No 135
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=73.06 E-value=7.5 Score=30.28 Aligned_cols=64 Identities=8% Similarity=-0.052 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
-+++.+++.+..|.+.=-...+..+ +....-+......--+.++|+.+|+.++|.+.+.+|...
T Consensus 126 ~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~ 189 (468)
T TIGR00788 126 FIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRI 189 (468)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 3566777788888765455555555 333333434333333467899999999999999877443
No 136
>PRK11043 putative transporter; Provisional
Probab=72.09 E-value=13 Score=27.10 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=36.8
Q ss_pred hhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 21 ALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 21 ~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
..+|.+..+.+..+.+ -..-++...++.+++.++.+++|.++|++|-...+
T Consensus 24 ~~~p~~~~i~~~~~~s--~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~ 74 (401)
T PRK11043 24 MYLPAFKAIQADLQTS--ASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL 74 (401)
T ss_pred HHHhhHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHH
Confidence 3456665555544433 23556777889999999999999999999876554
No 137
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=71.93 E-value=5.5 Score=27.81 Aligned_cols=55 Identities=18% Similarity=0.097 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhh
Q psy16969 8 HLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIM 65 (77)
Q Consensus 8 ~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~ 65 (77)
.++.|++.+...++....+.+..+.++ -|...++.+....+|..+||.+++.+..
T Consensus 103 r~l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~G~~i~~~~~~~~~~ 157 (394)
T TIGR00883 103 RLIQGFSLGGEWGGAALYLAEYAPPGK---RGFYGSFQQVGAPVGLLLAALTVLLLSY 157 (394)
T ss_pred HHHHHhhccccccccHHHhhhcCCccc---chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777776665556666665444 3566677788888888888888776654
No 138
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=71.71 E-value=6.5 Score=33.54 Aligned_cols=55 Identities=13% Similarity=-0.025 Sum_probs=38.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhc
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ 66 (77)
+++|+..+..-+.+- +++.|.-.+..-|.++++.+..-.+|..+||.++|.+.+.
T Consensus 656 ~l~g~~~~~~~~~~~---a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~ 710 (742)
T TIGR01299 656 CLFGGLSIAAWNALD---VLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI 710 (742)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444333 3344444566789999999999999999999999988764
No 139
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=71.51 E-value=5.4 Score=29.44 Aligned_cols=53 Identities=11% Similarity=-0.031 Sum_probs=34.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhc
Q psy16969 11 LGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 11 lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ 66 (77)
+++.-+..|.+.--.+.+.++.++ -|.+-++....+++|..+|+.+++.+.+.
T Consensus 104 ~~~~~~~~~~~~~al~~~~~~~~~---r~~~~~~~~~g~~~g~i~g~~l~~~l~~~ 156 (402)
T PRK11902 104 VAFLSASQDIVFDAYSTDVLHPEE---RGAGAAVKVLGYRLAMLVSGGLALWLADR 156 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhh---hhHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 344444444443334455554444 45556666788999999999999998885
No 140
>PRK15075 citrate-proton symporter; Provisional
Probab=71.23 E-value=9.2 Score=28.67 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=35.9
Q ss_pred HHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHH-HHHHHHHHhhcccchhhhhhccCcc
Q psy16969 10 GLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQ-QTAVSLAYSLGKFVVPTKIMDLSMP 70 (77)
Q Consensus 10 ~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~-~~a~slg~~iGP~~~G~Lv~~igf~ 70 (77)
+.++..|.......+...+.++.+ .-|.+.++. ++...++..++|.+.|.+++..|..
T Consensus 340 ~~~~~~g~~~~~~~~~~~e~~p~~---~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 340 WLSFLYGSYNGAMVVALTEVMPAE---VRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHHHHHhhHHHHHHHHCCCC---ccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 345555655555555666666543 335555554 3333345667999999999998854
No 141
>TIGR00898 2A0119 cation transport protein.
Probab=71.03 E-value=2.1 Score=32.37 Aligned_cols=58 Identities=22% Similarity=0.117 Sum_probs=40.0
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhh
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIM 65 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~ 65 (77)
+.--++.|++.+.........+.+.++.++ -|.+-++....+++|..++|.+++.+.+
T Consensus 184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 241 (505)
T TIGR00898 184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ---RAIVGTLIQVFFSLGLVLLPLVAYFIPD 241 (505)
T ss_pred HHHHHHHHhhccchHHHHHHHhheecChhh---hHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344566777777766665555666665544 4556667788999999999999877654
No 142
>KOG2504|consensus
Probab=70.85 E-value=7.5 Score=31.48 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
=-...|+.+|..-+=.-+++.+++ +......+|++.-..-+++..+||.++|.+.+.-|
T Consensus 394 ~~~~fG~~~g~~~~l~~~i~~~~~---g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg 452 (509)
T KOG2504|consen 394 FSILFGFCVGSFSSLTPVILVDLV---GLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG 452 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---ChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC
Confidence 334556666665543334566666 66778889999999999999999999998877665
No 143
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=70.00 E-value=8.9 Score=24.34 Aligned_cols=54 Identities=24% Similarity=0.215 Sum_probs=37.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHH-HHHHHHhhcccchhhhhhc
Q psy16969 11 LGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQT-AVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 11 lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~-a~slg~~iGP~~~G~Lv~~ 66 (77)
.|++.|.........+.+..+. . ...+...++... ...++..+||.+++.+...
T Consensus 104 ~g~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 104 QGLGGGGLLPVASALLSEWFPE-A-TERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHhhhHHHHHHHHHHHHHhcCc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666665554444445555543 1 567888888888 6889999999888887765
No 144
>PRK15075 citrate-proton symporter; Provisional
Probab=68.09 E-value=8.2 Score=28.95 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhh
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIM 65 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~ 65 (77)
++.|++.|..-......+.+.++ ...-|.+-++.+...++|..+||.+++.+..
T Consensus 125 ~l~G~~~g~~~~~~~~~~~e~~p---~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~ 178 (434)
T PRK15075 125 LLQGFSAGVELGGVSVYLAEIAT---PGRKGFYTSWQSASQQVAVVFAALLGYLLNQ 178 (434)
T ss_pred HHhhccccccHHHHHHHHHhhCC---cccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665554443334444444 4455777888888888888888888887753
No 145
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=67.86 E-value=16 Score=27.74 Aligned_cols=39 Identities=15% Similarity=0.026 Sum_probs=33.1
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHH-HHhhcccchhhhhh
Q psy16969 27 ASVVDSRHTAHYGSIYALQQTAVSL-AYSLGKFVVPTKIM 65 (77)
Q Consensus 27 a~lvD~r~~~~YGsvyAI~~~a~sl-g~~iGP~~~G~Lv~ 65 (77)
....|.-.....|.+.++.|..-.+ |-.++|.+.|.+.+
T Consensus 372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 4445666777899999999998886 87999999999999
No 146
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=67.37 E-value=7.6 Score=30.22 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=41.7
Q ss_pred ccchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCc
Q psy16969 3 GLIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSM 69 (77)
Q Consensus 3 ~li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf 69 (77)
.+++..++++++-.+......-....++ ..+.-|...++......+|..+|+.++...++..|.
T Consensus 383 ~~i~~~~~~~~ge~~~~p~~~~~~~~~a---P~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~ 446 (475)
T TIGR00924 383 FMVLIYLFQTLGELMISPLGLSWWTKIA---PQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGV 446 (475)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 3566777777777776665333333333 455677778888888888888887777766554443
No 147
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=67.11 E-value=13 Score=27.58 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhh
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKI 64 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv 64 (77)
++.|++.|..-....-.+++..+. ..-|.+-++.+....+|..++|++++.+.
T Consensus 128 ~l~G~~~g~~~~~~~~~i~e~~~~---~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 180 (479)
T PRK10077 128 IIGGIGVGLASMLSPMYIAEIAPA---HIRGKLVSFNQFAIIFGQLVVYFVNYFIA 180 (479)
T ss_pred HHHhhhHhHHhhHHHHHHHhhCCh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677776666544455555544 34567778888999999999988877654
No 148
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=65.65 E-value=18 Score=26.39 Aligned_cols=41 Identities=10% Similarity=-0.051 Sum_probs=26.8
Q ss_pred hcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 31 DSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 31 D~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
|.+.....+..-++....+++|+.+|+...+.+.+.+|...
T Consensus 124 ~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~ 164 (390)
T TIGR02718 124 EHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRP 164 (390)
T ss_pred HhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 33333344555566666777788888877778888887543
No 149
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=63.86 E-value=14 Score=27.41 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=40.8
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhcc
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDL 67 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~i 67 (77)
+.--++.|++.+...+... .++.++.....|.+-++...+..+|..+|+.+++.+.+..
T Consensus 101 l~~r~l~Gig~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~ 159 (393)
T PRK09705 101 LSSALLGGVGIGIIQAVMP----SVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHS 159 (393)
T ss_pred HHHHHHHHhHHHHHhhhhh----HHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344566777776554322 2333333355788999999999999999999999888764
No 150
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=63.18 E-value=27 Score=26.55 Aligned_cols=63 Identities=13% Similarity=-0.059 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhhhhhh----HHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 6 GPHLGLGLGIGILDSAL----VPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~----lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
...+.++..+...|-.. +|.+.. .-+-+ ..-.+....+|.++|+++.+.+|.++|++|-++.+
T Consensus 31 ~~~~~~~~~~~y~~r~~~~~~~~~i~~---~~~~s--~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l 97 (467)
T PRK09556 31 YLVVFIGYLTMYLIRKNFKAAQNDMIS---TYGLS--TTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFL 97 (467)
T ss_pred HHHHHHHHHHHHHHhcChhhhhHHHHH---hcCCC--HHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchH
Confidence 34555666666665433 344333 22322 24567778889999999999999999999987753
No 151
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=60.02 E-value=35 Score=25.69 Aligned_cols=58 Identities=10% Similarity=0.053 Sum_probs=39.1
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhc
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ 66 (77)
+.++++.+++.++.... .-...-..+....|++-++++........+|+.++|.+.+.
T Consensus 316 ~~~~~l~~~G~~~~~p~----~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~ 373 (413)
T PRK15403 316 VLGTSLYAFGIGLIFPT----LFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN 373 (413)
T ss_pred HHHHHHHHHHHHHHhHH----HHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556666666664433 22222223333479999999999999999999999988665
No 152
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=57.37 E-value=34 Score=24.82 Aligned_cols=45 Identities=2% Similarity=-0.072 Sum_probs=31.3
Q ss_pred HHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 26 LASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 26 la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
+-++.+..+.+. +..++....+.+++.++..+.|.++|++|-...
T Consensus 26 lp~~~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~ 70 (392)
T PRK10473 26 LPRIAADLNASE--AQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPV 70 (392)
T ss_pred HHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHH
Confidence 333444334332 345677778889999999999999999986543
No 153
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=55.58 E-value=21 Score=27.49 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=42.0
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhh
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIM 65 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~ 65 (77)
+.--++.|++.|..-++..-.+.+.. ....-|.+.++.+...++|..+|+.++..+..
T Consensus 119 ~~~r~l~G~~~g~~~~~~~~~~~e~~---p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~ 176 (502)
T TIGR00887 119 CFWRFWLGVGIGGDYPLSAIITSEFA---TKKWRGAMMAAVFAMQGFGILAGAIVALIVLA 176 (502)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhc---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445778888887776554555555 44556888889999999999999988876654
No 154
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=55.12 E-value=19 Score=27.93 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=41.7
Q ss_pred HHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHH-HHHHHHhhcccchhhhhhccCccchh
Q psy16969 12 GLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQT-AVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 12 G~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~-a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
|++.|+.-.+.+-.+...+ ......++=+++.. .+.+|..+|..+||.+.+++|-....
T Consensus 312 G~tf~~~~~a~~~yi~~~~---p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~ 371 (400)
T PF03825_consen 312 GLTFGLFHAASVRYIDRIA---PPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF 371 (400)
T ss_pred hHHHHHHHHHHHHHHHHhC---CccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence 7777777666444444444 44555666666665 46899999999999999999876543
No 155
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=54.40 E-value=20 Score=25.25 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 42 YALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 42 yAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
.+.....+.+++.++.+++|.+.|++|-.+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 70 (366)
T TIGR00886 39 LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTT 70 (366)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 45566778899999999999999999976543
No 156
>PRK09952 shikimate transporter; Provisional
Probab=54.30 E-value=31 Score=26.14 Aligned_cols=55 Identities=13% Similarity=-0.017 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhh
Q psy16969 8 HLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIM 65 (77)
Q Consensus 8 ~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~ 65 (77)
-++.|++.|..-+.....+.+..+.|+. |..-+..+..+.+|..+++.+.+.+..
T Consensus 132 R~l~G~~~g~~~~~~~~~~~e~~p~~~r---g~~~~~~~~g~~~G~~l~~~~~~~l~~ 186 (438)
T PRK09952 132 RAIQGFAVGGEWGGAALLAVESAPKNKK---AFYSSGVQVGYGVGLLLSTGLVSLISM 186 (438)
T ss_pred HHHHHhhhcccHHHHHHHHHHhCCCCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556888887766666667777766654 444555666667777666665555553
No 157
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=53.54 E-value=9.2 Score=30.72 Aligned_cols=57 Identities=12% Similarity=0.075 Sum_probs=43.2
Q ss_pred HHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHH-HHHHHHHHhhcccchhhhhhccCccc
Q psy16969 12 GLGIGILDSALVPLLASVVDSRHTAHYGSIYALQ-QTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 12 G~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~-~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
|+++++...+.+--++.-.| .....++|++. +++..++-.+.+..+|.+-|++|+..
T Consensus 323 ~~e~~l~lva~fkYI~~~fd---~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~ 380 (412)
T PF01306_consen 323 ALEFPLLLVAAFKYITAHFD---KRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQH 380 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHS----GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC---HhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHH
Confidence 56666666665544555555 44677899995 89999999999999999999999853
No 158
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=52.56 E-value=31 Score=27.69 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 8 HLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 8 ~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
-++.|+.+|-.-+.-=..++.+++..+. +.-|+++++.-=..--+||++-|.+.+..|
T Consensus 387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e---~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 387 AVLIGLFMGGIQSASRSLFSRLIPPGRE---AEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3567888888888888889999987666 666777777777777889999999998876
No 159
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=51.62 E-value=18 Score=29.65 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcC----CCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh-ccc
Q psy16969 8 HLGLGLGIGILDSALVPLLASVVDSR----HTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR-QQS 76 (77)
Q Consensus 8 ~~~lG~~ig~vds~~lP~la~lvD~r----~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~-~~~ 76 (77)
.++.+++.+....-.--++++.||-- |.-.=|..|+++....=+|.+++-.+.|..-..+|+...- .|+
T Consensus 334 ~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~~~~~Q~ 407 (467)
T COG2211 334 LIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVPNVSAQS 407 (467)
T ss_pred HHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCC
Confidence 34555566665554444678888754 4567899999999999999999999999999999998776 565
No 160
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=49.33 E-value=43 Score=25.73 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=37.5
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhh
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKI 64 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv 64 (77)
++.--++.|++.|..-+.....+.+..+.++.+ ..-++......+|..+|+.++..+.
T Consensus 121 l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg---~~~~~~~~~~~~G~~lg~~~~~~~~ 178 (490)
T PRK10642 121 LLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRG---FMGSWLDFGSIAGFVLGAGVVVLIS 178 (490)
T ss_pred HHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778888887777666777777655544 4445556666777777776655444
No 161
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=48.50 E-value=32 Score=26.75 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=42.9
Q ss_pred hhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCcc
Q psy16969 21 ALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMP 70 (77)
Q Consensus 21 ~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~ 70 (77)
..||.+--.+..=..+.=|++||+.-...++|..++-.+|..|.+.+|.+
T Consensus 335 ~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt 384 (433)
T PF03092_consen 335 AFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVT 384 (433)
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 36787777776667888999999999999999999999999999998853
No 162
>TIGR00901 2A0125 AmpG-related permease.
Probab=46.45 E-value=45 Score=23.77 Aligned_cols=41 Identities=15% Similarity=0.078 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHH
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVS 50 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~s 50 (77)
-.++.+++.++...+..+.+.+++| .+..|+++++++...+
T Consensus 315 ~~~l~~~~~~~~~~~~~~~~~~~~p---~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 315 TITLEAVTGGLGTVAFVAFLSKLSN---PKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHh
Confidence 3445577788888887777777775 4556777777766554
No 163
>KOG0255|consensus
Probab=45.25 E-value=15 Score=28.22 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 43 ALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 43 AI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
...+..|-+|+.+||++.|.|.|.+|=..
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~ 149 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKP 149 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccHH
Confidence 45778899999999999999999988543
No 164
>KOG2816|consensus
Probab=45.21 E-value=11 Score=30.49 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=41.7
Q ss_pred HHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 25 LLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 25 ~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
.+++..|+-+...=-..|++.+-.+..+..+||..++.+++..|...+-
T Consensus 133 ~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f 181 (463)
T KOG2816|consen 133 GFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVF 181 (463)
T ss_pred hhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHH
Confidence 6777888877777778899999999999999999999999998876543
No 165
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=43.79 E-value=60 Score=24.33 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=36.4
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhh
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKI 64 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv 64 (77)
+.--++.|++.|..-......+.+.++.++. |...++.+.....|..+++.++..+.
T Consensus 128 ~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~r---g~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 128 LLARLFQGLSVGGEYGTSATYMSEVAVEGRK---GFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred HHHHHHHHhhhhhhHhhHHHHHHHhCCCCcc---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334567888887666656666666665543 45566666677777777777655444
No 166
>KOG0569|consensus
Probab=42.52 E-value=19 Score=29.56 Aligned_cols=62 Identities=16% Similarity=0.313 Sum_probs=44.6
Q ss_pred HHHHHHhhhhhhHHHHHHHHhcCCCCcch---------hHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 11 LGLGIGILDSALVPLLASVVDSRHTAHYG---------SIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 11 lG~~ig~vds~~lP~la~lvD~r~~~~YG---------svyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
.|..++.+-+| -+.+..-.|......|| ..+....-.|.+|-++|.+.+|.+++.+|-++++
T Consensus 23 ~Gy~~~~iNap-~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l 93 (485)
T KOG0569|consen 23 FGYNIGVVNAP-QELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNAL 93 (485)
T ss_pred hhhhheecCch-HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 45566666666 44555544444334444 5677788899999999999999999999988654
No 167
>TIGR00898 2A0119 cation transport protein.
Probab=41.86 E-value=39 Score=25.52 Aligned_cols=35 Identities=11% Similarity=-0.014 Sum_probs=28.5
Q ss_pred HHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchh
Q psy16969 27 ASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVP 61 (77)
Q Consensus 27 a~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G 61 (77)
.+..|.-.+...+.+.++.+....+|..++|.+.+
T Consensus 433 ~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 433 LYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred HHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 44455556667788999999999999999999988
No 168
>KOG2533|consensus
Probab=41.34 E-value=23 Score=28.85 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=33.7
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 34 HTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 34 ~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
+..-+|.-|...|++|.++|++|=..+|.|.+++++..
T Consensus 75 dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~ 112 (495)
T KOG2533|consen 75 DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSK 112 (495)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHH
Confidence 34578889999999999999999999999999999554
No 169
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=40.89 E-value=49 Score=24.59 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=25.5
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcccch------hhhhhccCccc
Q psy16969 34 HTAHYGSIYALQQTAVSLAYSLGKFVV------PTKIMDLSMPY 71 (77)
Q Consensus 34 ~~~~YGsvyAI~~~a~slg~~iGP~~~------G~Lv~~igf~~ 71 (77)
.....|.+.++.+....++-.+||.+. |.+.+.+|.++
T Consensus 394 p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~ 437 (479)
T PRK10077 394 PNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGF 437 (479)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCcc
Confidence 455678888888888888877774444 44455666554
No 170
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=40.53 E-value=43 Score=25.15 Aligned_cols=30 Identities=7% Similarity=0.005 Sum_probs=27.0
Q ss_pred cchhHHHHHHHHHHHHHhhcccchhhhhhc
Q psy16969 37 HYGSIYALQQTAVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 37 ~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ 66 (77)
..|.+.++.|++-.++-.++|.+.|.+++.
T Consensus 393 ~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~ 422 (465)
T TIGR00894 393 FLGFIKGITGLPGFIGGLIASTLAGNILSQ 422 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence 789999999999999999999999988864
No 171
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=40.47 E-value=81 Score=25.39 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=32.5
Q ss_pred CCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 35 TAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 35 ~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
-..-+.+=++.+.++.+|-++|-.+||.+.+++|...
T Consensus 330 p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~ 366 (394)
T COG2814 330 PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAA 366 (394)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 3566788899999999999999999999999988754
No 172
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=40.22 E-value=61 Score=26.23 Aligned_cols=64 Identities=13% Similarity=-0.035 Sum_probs=46.1
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
++.+.+.+|+..+...|-=.-+++..++ ++...+|.--++.|.+.|+.-.+-.+.+|.+.+.+|
T Consensus 383 ~l~~~~~~Gi~~A~~~siPfal~s~~~~-~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g 446 (477)
T TIGR01301 383 ALIVFAILGIPLAITYSIPFALASIRSS-NLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG 446 (477)
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHcc-ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4556667888877777643345666665 234677888999999999999887777777666655
No 173
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=39.30 E-value=63 Score=26.29 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 6 GPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
......|+++++.-|+.+-++++++ ....-+.+=+|.-+-.-+|+.++.++.|.+-+.+.
T Consensus 94 l~F~l~G~G~~~s~T~~lALl~D~~---~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s 153 (403)
T PF03209_consen 94 LAFLLYGLGVHASGTSFLALLADLA---PEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS 153 (403)
T ss_pred HHHHHHHhhHhHhHHHHHHHHHhcC---CHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 3456789999999999666655555 44556678888888889999999999998887643
No 174
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=38.84 E-value=47 Score=23.68 Aligned_cols=46 Identities=11% Similarity=0.188 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 21 ALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 21 ~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
|.+|.+.. ..|.+. ..-+....++.+++.++.++.|.++|++|-+.
T Consensus 12 p~~~~~~~---~~~~s~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 57 (377)
T PRK11102 12 PALPVIAA---DFGVSA--GSVQMTLSAYILGFAIGQLFYGPMADSFGRKP 57 (377)
T ss_pred ccHHHHHH---HhCCCH--HHHHHHHHHHHHHHHHHHHhhchHHhhcCChH
Confidence 45555543 234332 34455667788999999999999999998544
No 175
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=37.92 E-value=74 Score=26.78 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=38.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
+++|++-|..- +.--.++.-+ ....|+.+.++.+.+..+|-+++|.+++.++ .+|
T Consensus 123 ~llGvaEA~~~-A~~syI~~Wf---P~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~g 177 (511)
T TIGR00806 123 VFYSVTMAARI-AYSSYIFSLV---PPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLG 177 (511)
T ss_pred HHHHHHHHHHH-HHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC
Confidence 44454444443 3333444444 4567999999999999999999999999944 455
No 176
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=37.52 E-value=23 Score=27.89 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=36.8
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
+++..+++|++-+++.-..+-....+.+.+ .-|.+.+ .+.++.++|+.++|.+.+.+.
T Consensus 385 ~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~---~rg~~~g----~~~l~~a~g~~~~g~~~~~~~ 442 (500)
T PRK09584 385 LIASYGLQSIGELMISGLGLAMVAQLVPQR---LMGFIMG----SWFLTTAGAALIAGYVANLMA 442 (500)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCcHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 566677777777776665444555555443 3444444 556667788888888876443
No 177
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=36.95 E-value=89 Score=25.16 Aligned_cols=61 Identities=25% Similarity=0.139 Sum_probs=48.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
.+.|++.|..=+-....-+++| ..+.-+++=++..+-.+++..+|..+|..+-+.+|..++
T Consensus 109 ~~~g~a~G~f~~i~~~~a~~lv---pp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~ 169 (394)
T COG2814 109 ALAGLAHGVFWSIAAALAARLV---PPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRAT 169 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---CccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHH
Confidence 4566777766665555666777 455678999999999999999999999999999987654
No 178
>KOG2615|consensus
Probab=36.28 E-value=53 Score=27.42 Aligned_cols=45 Identities=20% Similarity=0.311 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHhcCC-CCcchhHHHHHHHHHHHHHhhcccchhhhh
Q psy16969 20 SALVPLLASVVDSRH-TAHYGSIYALQQTAVSLAYSLGKFVVPTKI 64 (77)
Q Consensus 20 s~~lP~la~lvD~r~-~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv 64 (77)
+...|-+..++-+-. .+..|++-+|...+-|++=++||.++|.+.
T Consensus 367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 367 ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 345577777775443 567899999999999999999999999874
No 179
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=36.26 E-value=1.2e+02 Score=23.50 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=33.2
Q ss_pred hHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 22 LVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 22 ~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
..|.+..+.+..+.+. .-.+.....+.+++.+|.+++|.+.|++|-.+.
T Consensus 55 ~~~~~~~l~~~~gls~--~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~ 103 (476)
T PLN00028 55 AAPLLPIIRDNLNLTK--SDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYG 103 (476)
T ss_pred HHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence 3355555555444332 234445677888999999999999999997654
No 180
>PTZ00207 hypothetical protein; Provisional
Probab=35.52 E-value=47 Score=27.84 Aligned_cols=56 Identities=20% Similarity=0.164 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhh-cccchhhhhh
Q psy16969 6 GPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSL-GKFVVPTKIM 65 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~i-GP~~~G~Lv~ 65 (77)
+-.++.|++.+..++..+..+....+ ...|.+-++.+....+|-++ +|+..+.+.+
T Consensus 125 l~r~l~G~G~~~~~~~~~~~i~~~Fp----~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~ 181 (591)
T PTZ00207 125 VYNGLMTLGCMLFDLGAVVTVLSVFP----SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD 181 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888876666555443 34599999999999999985 7777666654
No 181
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=35.20 E-value=83 Score=25.48 Aligned_cols=54 Identities=13% Similarity=0.015 Sum_probs=37.8
Q ss_pred HHHhhhhhhHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHhhcccchhhh--hhccCcc
Q psy16969 14 GIGILDSALVPLLASVVDSRHTAHY--GSIYALQQTAVSLAYSLGKFVVPTK--IMDLSMP 70 (77)
Q Consensus 14 ~ig~vds~~lP~la~lvD~r~~~~Y--GsvyAI~~~a~slg~~iGP~~~G~L--v~~igf~ 70 (77)
..++... |.-+.+.|.-..... +.+++++.....+|..+|+.++|.+ .+.+|+.
T Consensus 127 ~~n~~~~---p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~ 184 (477)
T TIGR01301 127 ANNMLQG---PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFT 184 (477)
T ss_pred HHHHHHH---HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccc
Confidence 4444444 455666665544432 6799999999999999999999975 5555554
No 182
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=34.90 E-value=1e+02 Score=23.80 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhh
Q psy16969 9 LGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKI 64 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv 64 (77)
+++|++.+. ..|...++.|.-....-|.+.++.+....+|..+|+.+.+.+.
T Consensus 132 ~l~G~~~~~----~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~ 183 (476)
T PLN00028 132 FFIGFSLAT----FVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVF 183 (476)
T ss_pred HHHHHHHHh----hHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554442 3343344444334455677888877777777777766665543
No 183
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=31.39 E-value=62 Score=25.53 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=41.1
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchh
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVP 61 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G 61 (77)
++.+.+++|++.++...+.+-.....++.+. .|.+-++.+.+-.+|.++|-.++.
T Consensus 382 ~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~---~g~~~g~~~l~~~ig~~lg~~l~~ 436 (489)
T PRK10207 382 IVLVYLFQSLGELFISALGLAMIAALVPQHL---MGFILGMWFLTQAAAFLLGGYVAT 436 (489)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhChHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888899998888876666666666554 577888888888888887766654
No 184
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=27.73 E-value=39 Score=22.97 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=17.7
Q ss_pred cchhHHHHHHHHHhhhhhhHHH
Q psy16969 4 LIGPHLGLGLGIGILDSALVPL 25 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~ 25 (77)
|=-.++++|.-+|+|+|-+.|-
T Consensus 29 LGSvLA~~Gvv~GLVEtVCsPF 50 (102)
T PF15103_consen 29 LGSVLAFFGVVIGLVETVCSPF 50 (102)
T ss_pred hhhHHHHHHHHHHHHHHHhCcc
Confidence 3346789999999999988773
No 185
>PRK04164 hypothetical protein; Provisional
Probab=27.09 E-value=30 Score=24.73 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=18.7
Q ss_pred HHHHHHHHhhcccchhhhhhcc
Q psy16969 46 QTAVSLAYSLGKFVVPTKIMDL 67 (77)
Q Consensus 46 ~~a~slg~~iGP~~~G~Lv~~i 67 (77)
-+||++||+.|-.+++.+.+.+
T Consensus 67 ~~aYa~Gf~~g~~Vg~~ied~l 88 (181)
T PRK04164 67 IIAYALGFAVGIYVGMKIEEKL 88 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999888764
No 186
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=26.88 E-value=1.3e+02 Score=19.17 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=29.4
Q ss_pred hhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhc
Q psy16969 17 ILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 17 ~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ 66 (77)
+.-||++|.|..=. .-+..-+ +....+..+||.+|-+....+.+.
T Consensus 9 FayTplLP~M~~~~--~ls~~~a---g~lasaNy~GYL~GAl~~~~~~~~ 53 (85)
T PF06779_consen 9 FAYTPLLPLMQADG--GLSLSQA---GWLASANYLGYLVGALLASRLPRH 53 (85)
T ss_pred HHHHhHhHHHHHhc--CCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45688999886533 2222333 344566678999999888877654
No 187
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=25.57 E-value=2.2e+02 Score=21.89 Aligned_cols=34 Identities=18% Similarity=-0.030 Sum_probs=22.5
Q ss_pred CCCcchhHHHH-HHHHHHHHHhhcccchhhhhhccC
Q psy16969 34 HTAHYGSIYAL-QQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 34 ~~~~YGsvyAI-~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
....-|++.++ +|+.. ++-.++|.+.|.+.+..+
T Consensus 372 p~~~Rg~~~g~~~~~~~-~~g~~~p~i~g~l~~~~~ 406 (490)
T PRK10642 372 PTHIRYSALAAAFNISV-LVAGLTPTLAAWLVESTQ 406 (490)
T ss_pred CCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhC
Confidence 45556776775 45544 344789999999887544
No 188
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=25.41 E-value=1.2e+02 Score=19.08 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 25 LLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 25 ~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
..+++ +....+.|+.+..+.+..+.+...++--..-.+.+++|
T Consensus 19 ~~~~~-g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G 61 (162)
T PF01554_consen 19 FVGRL-GPEALAAYGIASSIFSILFMLIFGLATALQILISQNIG 61 (162)
T ss_dssp CCHCC-TTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHh-CHHHHHHHHHHHHHHHHHhhhcccccccccceeecccc
Confidence 34444 66678889999999999999988888777777777766
No 189
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=22.15 E-value=1.4e+02 Score=24.50 Aligned_cols=56 Identities=23% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhh---cccchhhhhhccC
Q psy16969 8 HLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSL---GKFVVPTKIMDLS 68 (77)
Q Consensus 8 ~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~i---GP~~~G~Lv~~ig 68 (77)
..++|++.|..-.- -|..+.| |++.==.+-...-.+-++||.+ ||.+-|.+-|..|
T Consensus 303 ~~llG~G~G~~F~l---aL~li~~--rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 303 ALLLGLGQGGAFPL---ALTLILL--RSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred HHHHhCccchHHHH---HHHHHHh--hcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
No 190
>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.00 E-value=2.1e+02 Score=20.96 Aligned_cols=47 Identities=28% Similarity=0.294 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHhhhhhhH-HHHHHHHhcC-CCC--cchhHHHHHHHHHHHHHhh
Q psy16969 6 GPHLGLGLGIGILDSALV-PLLASVVDSR-HTA--HYGSIYALQQTAVSLAYSL 55 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~l-P~la~lvD~r-~~~--~YGsvyAI~~~a~slg~~i 55 (77)
...+.+|+..+.+-||+. |.++...-.- .++ ..| ++.-.+|++|+++
T Consensus 127 ~~~f~lGl~f~~~wtPC~gPil~sil~laa~~~~~~~g---~~ll~~Y~lGl~l 177 (220)
T COG0785 127 LGAFLLGLLFALGWTPCIGPILGSILALAASTGSVVLG---ALLLAAYALGLAL 177 (220)
T ss_pred hhHHHHHHHHHHHhccchhHHHHHHHHHHhcCCcHHHH---HHHHHHHHHHHHH
Confidence 446789999999999886 8776654211 122 222 2344677777766
No 191
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=21.28 E-value=1.9e+02 Score=21.62 Aligned_cols=64 Identities=8% Similarity=-0.071 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHH-hcCC---CC--cchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 9 LGLGLGIGILDSALVPLLASVV-DSRH---TA--HYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 9 ~~lG~~ig~vds~~lP~la~lv-D~r~---~~--~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
+.+|..+-..|...++.+.-.. +..+ .+ ..+.+..+.-. ..++..+|.+++|.+.|++|=++++
T Consensus 27 ~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ig~~~~G~l~Dr~Grr~~l 96 (432)
T PRK10406 27 ASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAA-GFLMRPIGGWLFGRIADKHGRKKSM 96 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3455556667776665543322 2211 11 12333333322 2244458999999999999977654
No 192
>PF15179 Myc_target_1: Myc target protein 1
Probab=21.18 E-value=52 Score=24.72 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=15.0
Q ss_pred HHHHHHHHhhcccchhhh
Q psy16969 46 QTAVSLAYSLGKFVVPTK 63 (77)
Q Consensus 46 ~~a~slg~~iGP~~~G~L 63 (77)
-++||+.+++|-++||.+
T Consensus 22 IlaF~vSm~iGLviG~li 39 (197)
T PF15179_consen 22 ILAFCVSMAIGLVIGALI 39 (197)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 379999999998877765
No 193
>KOG1330|consensus
Probab=20.88 E-value=32 Score=28.92 Aligned_cols=59 Identities=14% Similarity=0.055 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 7 PHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 7 p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
-=.+.|++-+.+-+-.-+.++++. ....-+.++++.+.+--+|+.+|=++|+.+.+.-+
T Consensus 127 ~R~~vGiGeAs~~~ia~s~IaD~f---~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~ 185 (493)
T KOG1330|consen 127 CRGFVGIGEASYSPIAPSLIADSF---PDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF 185 (493)
T ss_pred HHHHhccchhhhcccchhHhhhcC---cchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence 334556666665554445555554 67788999999999999999999988887776655
Done!