Query psy16969
Match_columns 77
No_of_seqs 81 out of 83
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 18:19:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 96.8 0.0011 3.8E-08 47.9 4.0 69 4-72 112-180 (524)
2 4aps_A DI-OR tripeptide H+ sym 96.7 0.0022 7.4E-08 45.9 4.6 69 3-72 110-178 (491)
3 1pw4_A Glycerol-3-phosphate tr 96.4 0.0051 1.8E-07 42.9 4.9 67 3-72 121-188 (451)
4 2gfp_A EMRD, multidrug resista 96.1 0.0046 1.6E-07 42.6 3.6 65 5-72 92-156 (375)
5 1pw4_A Glycerol-3-phosphate tr 96.0 0.013 4.4E-07 40.9 5.2 64 6-72 351-415 (451)
6 3o7q_A L-fucose-proton symport 95.1 0.041 1.4E-06 38.3 5.4 62 4-68 120-182 (438)
7 2gfp_A EMRD, multidrug resista 94.1 0.025 8.6E-07 38.9 2.3 63 5-71 295-357 (375)
8 4aps_A DI-OR tripeptide H+ sym 91.7 0.22 7.6E-06 35.4 4.4 59 5-66 390-448 (491)
9 2cfq_A Lactose permease; trans 91.5 0.063 2.2E-06 38.3 1.3 46 26-71 334-380 (417)
10 2xut_A Proton/peptide symporte 90.9 0.13 4.5E-06 37.1 2.6 59 5-66 409-467 (524)
11 4gc0_A D-xylose-proton symport 82.3 1.3 4.5E-05 31.3 3.6 61 12-73 25-88 (491)
12 3o7q_A L-fucose-proton symport 75.8 7.9 0.00027 26.6 5.9 52 20-73 43-94 (438)
13 2cfq_A Lactose permease; trans 68.5 0.55 1.9E-05 33.4 -1.5 50 15-65 114-163 (417)
14 4gc0_A D-xylose-proton symport 62.3 12 0.0004 26.4 4.5 63 5-70 130-192 (491)
15 3mkt_A Multi antimicrobial ext 22.6 1.5E+02 0.005 20.6 4.7 54 11-68 27-80 (460)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=96.80 E-value=0.0011 Score=47.93 Aligned_cols=69 Identities=7% Similarity=0.178 Sum_probs=56.8
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
++.-.++.|++.|....+....+.+.++.++.+.....|++.+...++|..+||.++|.+.+..|..|.
T Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~ 180 (524)
T 2xut_A 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVA 180 (524)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHH
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344567788888888888777788888777766667888889999999999999999999998886553
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=96.66 E-value=0.0022 Score=45.90 Aligned_cols=69 Identities=13% Similarity=0.236 Sum_probs=55.2
Q ss_pred ccchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 3 GLIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 3 ~li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
.++.-.++.|++.|...++....+.+.++.++ ..-|.++++.+...++|..+||.++|.+.+..|..|.
T Consensus 110 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~ 178 (491)
T 4aps_A 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD-RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVA 178 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHcCccc-ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34555677888888888887777777776433 2358899999999999999999999999999887664
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.37 E-value=0.0051 Score=42.92 Aligned_cols=67 Identities=7% Similarity=-0.082 Sum_probs=51.5
Q ss_pred ccchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC-ccch
Q psy16969 3 GLIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS-MPYS 72 (77)
Q Consensus 3 ~li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig-f~~~ 72 (77)
.+++--++.|++.|...++....+.+.+ .....|.+.++.+...++|..+||.++|.+.+.+| ..|.
T Consensus 121 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~---~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~ 188 (451)
T 1pw4_A 121 VMFVLLFLCGWFQGMGWPPCGRTMVHWW---SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAA 188 (451)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTTC---TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTC
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHC---CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3445566778888877777555444444 44568999999999999999999999999999888 6554
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=96.13 E-value=0.0046 Score=42.64 Aligned_cols=65 Identities=11% Similarity=0.049 Sum_probs=51.9
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccch
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~ 72 (77)
+.-.++.|++.+...+.....+.+..+.+ ..+.+.++.+...++|..+||.++|.+.+.+|..+.
T Consensus 92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 156 (375)
T 2gfp_A 92 IAASAMQGMGTGVGGVMARTLPRDLYERT---QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRAC 156 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS---SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHH
Confidence 34456678888888887777777777654 467889999999999999999999999988775543
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=95.95 E-value=0.013 Score=40.89 Aligned_cols=64 Identities=8% Similarity=-0.142 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHH-HHhhcccchhhhhhccCccch
Q psy16969 6 GPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSL-AYSLGKFVVPTKIMDLSMPYS 72 (77)
Q Consensus 6 ~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~sl-g~~iGP~~~G~Lv~~igf~~~ 72 (77)
...+++|++.+..-+.. .....|.-.....|.++++.+....+ |..+||.+.|.+.+..|..+.
T Consensus 351 ~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 415 (451)
T 1pw4_A 351 ICMIVIGFLIYGPVMLI---GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 415 (451)
T ss_dssp HHHHHHHHHHTHHHHHH---HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHH
T ss_pred HHHHHHHHHHhchHHHH---HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 33455565555544433 34445555666789999999999999 999999999999999886553
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=95.14 E-value=0.041 Score=38.29 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=49.4
Q ss_pred cchhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhh-hccC
Q psy16969 4 LIGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKI-MDLS 68 (77)
Q Consensus 4 li~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv-~~ig 68 (77)
++.-.++.|++.|..+++....+.+.. .....|.+.++.+...++|..+||.+++.+. +..+
T Consensus 120 l~~~~~l~G~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 120 FLVGLFIIAAGLGCLETAANPFVTVLG---PESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSS---CSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHHHhhHHHhhhhHHHHHHHHc---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 445567889999988888666665555 4556788899999999999999999999999 5544
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=94.10 E-value=0.025 Score=38.92 Aligned_cols=63 Identities=11% Similarity=-0.080 Sum_probs=50.1
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
+...++.|++.+.........+.+.++ + ..|.++++.+....+|..+||.+.|.+.+..++.+
T Consensus 295 ~~~~~l~g~~~~~~~~~~~~~~~~~~p-~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 357 (375)
T 2gfp_A 295 LVPAALFFFGAGMLFPLATSGAMEPFP-F---LAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSL 357 (375)
T ss_dssp HHHHHHHHHHHHHTSSTTHHHHHTHHH-H---HHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCC-c---ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence 355677788888877776666777775 2 47999999999999999999999999987765543
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=91.71 E-value=0.22 Score=35.41 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=42.6
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhc
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ 66 (77)
+...++.|++.+..-+.......+.++ ....|.+.++.+...++|..+||.++|.+.+.
T Consensus 390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p---~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 390 VGSWALVILGEMLISPVGLSVTTKLAP---KAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHTT---TTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345566677777766665555555554 44557888889999999999999999887653
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=91.48 E-value=0.063 Score=38.33 Aligned_cols=46 Identities=9% Similarity=0.020 Sum_probs=37.0
Q ss_pred HHHHHhcCCCCcchhHHHH-HHHHHHHHHhhcccchhhhhhccCccc
Q psy16969 26 LASVVDSRHTAHYGSIYAL-QQTAVSLAYSLGKFVVPTKIMDLSMPY 71 (77)
Q Consensus 26 la~lvD~r~~~~YGsvyAI-~~~a~slg~~iGP~~~G~Lv~~igf~~ 71 (77)
.....|.......|++|++ ++.+..+|..+||.++|.+.+..|..+
T Consensus 334 ~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~ 380 (417)
T 2cfq_A 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG 380 (417)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHH
Confidence 4555555566778899999 599999999999999999999877543
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=90.95 E-value=0.13 Score=37.06 Aligned_cols=59 Identities=15% Similarity=0.055 Sum_probs=43.8
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhc
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMD 66 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ 66 (77)
+...+++|++.+...........+.+ .....|.+.++.+...++|..+||.+.|.+.+.
T Consensus 409 ~~~~~l~g~~~~~~~~~~~~~~~~~~---p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 409 ILPYALLTFGEVLVSATGLEFAYSQA---PKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHC---CTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC---cHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34456667777766655444455555 455688999999999999999999999998873
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=82.32 E-value=1.3 Score=31.30 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=40.0
Q ss_pred HHHHHhhhhhhHHHHHHHHhcCCCC---cchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 12 GLGIGILDSALVPLLASVVDSRHTA---HYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 12 G~~ig~vds~~lP~la~lvD~r~~~---~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
|...+.+ +..+|.+...-...+.. .-.+..+....++.+|+.+|+++.|.+.|++|=++++
T Consensus 25 Gyd~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l 88 (491)
T 4gc0_A 25 GYDTAVI-SGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (491)
T ss_dssp HHHHHGG-GGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 4444443 34566666554322221 2234456677789999999999999999999966554
No 12
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=75.77 E-value=7.9 Score=26.62 Aligned_cols=52 Identities=15% Similarity=0.008 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCccchh
Q psy16969 20 SALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMPYSR 73 (77)
Q Consensus 20 s~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~~~~ 73 (77)
...-|.+..+.+..+.+. ...++...++.+++.++.+..|.+.|++|-++.+
T Consensus 43 ~~~~~~~~~~~~~~g~s~--~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l 94 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTN--FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI 94 (438)
T ss_dssp HHHHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH
T ss_pred HhHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH
Confidence 333344555555555432 3466778899999999999999999999976654
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=68.49 E-value=0.55 Score=33.43 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=32.0
Q ss_pred HHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhh
Q psy16969 15 IGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIM 65 (77)
Q Consensus 15 ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~ 65 (77)
.|....+..|.....++.+ ....|..|+..+...++|..+||.++|.+.+
T Consensus 114 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 163 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKV-SRRSNFEFGRARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHH-HHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHh-hhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555444431 1224556777777788999999999999886
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=62.27 E-value=12 Score=26.36 Aligned_cols=63 Identities=13% Similarity=0.040 Sum_probs=44.1
Q ss_pred chhHHHHHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccCcc
Q psy16969 5 IGPHLGLGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLSMP 70 (77)
Q Consensus 5 i~p~~~lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~igf~ 70 (77)
++-=++.|++.|..-+... .++.|.-....-|..-++.+....+|..+++.++..+....+..
T Consensus 130 ~~~R~l~G~g~G~~~~~~~---~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 192 (491)
T 4gc0_A 130 VIYRIIGGIGVGLASMLSP---MYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS 192 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccc
Confidence 3334567888887666533 44455555566677778888899999999999888877665543
No 15
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=22.61 E-value=1.5e+02 Score=20.64 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=32.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHhhcccchhhhhhccC
Q psy16969 11 LGLGIGILDSALVPLLASVVDSRHTAHYGSIYALQQTAVSLAYSLGKFVVPTKIMDLS 68 (77)
Q Consensus 11 lG~~ig~vds~~lP~la~lvD~r~~~~YGsvyAI~~~a~slg~~iGP~~~G~Lv~~ig 68 (77)
+..-.+.+|+.++ ++ ......+.|+.++.+.+....+...++.-..-.+.+.+|
T Consensus 27 ~~~~~~~v~~~~~---~~-lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g 80 (460)
T 3mkt_A 27 AQTGMGFVDTIMA---GG-VSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNG 80 (460)
T ss_dssp HHHHHHHHHHHTH---HH-HTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTS
T ss_pred HHHHHHHHHHHHH---Hc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445677777744 44 355667788888888777666666554444444444443
Done!