RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16969
         (77 letters)



>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta
           protein, structural genomics, PSI-2, protein STRU
           initiative; 2.70A {Porphyromonas gingivalis}
          Length = 506

 Score = 25.6 bits (56), Expect = 1.7
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 20  SALVPLLASVVDSRHTAHY 38
           S+ VP++A    S H+   
Sbjct: 403 SSFVPMVAHHDHSEHSVKV 421


>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein.,
           structural genomics, PSI-2, protein STR initiative; HET:
           CIT; 2.70A {Streptococcus mutans}
          Length = 519

 Score = 24.5 bits (53), Expect = 4.7
 Identities = 2/19 (10%), Positives = 6/19 (31%)

Query: 20  SALVPLLASVVDSRHTAHY 38
              V  + +V+    +   
Sbjct: 422 PTFVDKVNTVITPGTSVDV 440


>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI,
           protein structure initiative, midwest center for struc
           genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
           c.124.1.2 c.124.1.2
          Length = 497

 Score = 24.4 bits (53), Expect = 5.2
 Identities = 5/19 (26%), Positives = 11/19 (57%)

Query: 20  SALVPLLASVVDSRHTAHY 38
           S++VP+++ V  + H    
Sbjct: 407 SSVVPMVSHVDHTEHDVDI 425


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0586    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,070,984
Number of extensions: 48599
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 7
Length of query: 77
Length of database: 6,701,793
Length adjustment: 46
Effective length of query: 31
Effective length of database: 5,417,427
Effective search space: 167940237
Effective search space used: 167940237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)