RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16969
         (77 letters)



>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 198

 Score = 23.7 bits (51), Expect = 2.6
 Identities = 4/31 (12%), Positives = 15/31 (48%)

Query: 28  SVVDSRHTAHYGSIYALQQTAVSLAYSLGKF 58
             + +++    G +  + +TA  L+ ++ + 
Sbjct: 89  DEICAKYGIAPGDLRRIVETAEWLSNAMNRI 119


>d2g39a2 c.124.1.2 (A:224-497) Acetyl-CoA hydrolase (PA5445)
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 274

 Score = 23.3 bits (50), Expect = 3.8
 Identities = 5/19 (26%), Positives = 11/19 (57%)

Query: 20  SALVPLLASVVDSRHTAHY 38
           S++VP+++ V  + H    
Sbjct: 184 SSVVPMVSHVDHTEHDVDI 202


>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein,
          GcvT {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 89

 Score = 22.4 bits (48), Expect = 5.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 1  MSGLIGPHLGLGLGIGILDSAL 22
           SG + P L +G+GI  +    
Sbjct: 31 TSGTLSPLLNVGIGIAFVKEEY 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 242,782
Number of extensions: 7933
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 3
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)