BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16970
(257 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9GPJ1|SKEL2_DROME Protein Skeletor, isoforms D/E OS=Drosophila melanogaster
GN=Skeletor PE=1 SV=3
Length = 1503
Score = 245 bits (625), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/148 (76%), Positives = 127/148 (85%)
Query: 108 LFSDEPRVNFGDVRIPKGFDFPRPQKIGQLAGVHGVSSDPIVIVDAQTLLVPNFSYDGEA 167
++ DE VNFGDV IP DFPRPQKI L GVHGVSSD IVIVDAQTLLVPNFSYDGEA
Sbjct: 128 VWCDEFAVNFGDVSIPPNLDFPRPQKISALRGVHGVSSDNIVIVDAQTLLVPNFSYDGEA 187
Query: 168 PDAKFWVGTGPHPSPQGIRVPDENGKEEPLRRYNRKTIVLTLPGELTVFEIGHFGVWCEA 227
PDAKFWVG G P+ G+R+PDENGKE PLRRY RKTIVLTLP +LT+F+IGHFGVWCEA
Sbjct: 188 PDAKFWVGRGQRPTSDGLRIPDENGKENPLRRYERKTIVLTLPEDLTIFDIGHFGVWCEA 247
Query: 228 FTVDFGHIQIPANVNMPPSLKMLGVSPQ 255
FTVDFGH+++P +N+PPSLKMLG+SPQ
Sbjct: 248 FTVDFGHVRLPEGLNVPPSLKMLGISPQ 275
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 76/133 (57%), Gaps = 9/133 (6%)
Query: 115 VNFGDVRIPKGFDFPRPQKIGQLAGVH-GVSSDPIVIVDAQTLLVPNFSYDGEAPDAKFW 173
+FGD P KIG L +H GVS D + VD++T+ + F+YDGEAP A F+
Sbjct: 23 ASFGDAAYPY-----YGTKIGALTRLHHGVSGD-VYAVDSRTIFIKKFNYDGEAPAAYFY 76
Query: 174 VGTGPHPSPQGI-RVPDENGKEEPL-RRYNRKTIVLTLPGELTVFEIGHFGVWCEAFTVD 231
VG PS +G R+ DE G L RRY K + L+LP T+ +I F VWC+ F V+
Sbjct: 77 VGNTARPSNEGAARLRDERGGTASLTRRYRNKDVTLSLPEGKTLRDIKWFSVWCDEFAVN 136
Query: 232 FGHIQIPANVNMP 244
FG + IP N++ P
Sbjct: 137 FGDVSIPPNLDFP 149
>sp|Q9VGY6|SKEL1_DROME Protein Skeletor, isoforms B/C OS=Drosophila melanogaster
GN=Skeletor PE=1 SV=2
Length = 784
Score = 244 bits (624), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/148 (76%), Positives = 127/148 (85%)
Query: 108 LFSDEPRVNFGDVRIPKGFDFPRPQKIGQLAGVHGVSSDPIVIVDAQTLLVPNFSYDGEA 167
++ DE VNFGDV IP DFPRPQKI L GVHGVSSD IVIVDAQTLLVPNFSYDGEA
Sbjct: 128 VWCDEFAVNFGDVSIPPNLDFPRPQKISALRGVHGVSSDNIVIVDAQTLLVPNFSYDGEA 187
Query: 168 PDAKFWVGTGPHPSPQGIRVPDENGKEEPLRRYNRKTIVLTLPGELTVFEIGHFGVWCEA 227
PDAKFWVG G P+ G+R+PDENGKE PLRRY RKTIVLTLP +LT+F+IGHFGVWCEA
Sbjct: 188 PDAKFWVGRGQRPTSDGLRIPDENGKENPLRRYERKTIVLTLPEDLTIFDIGHFGVWCEA 247
Query: 228 FTVDFGHIQIPANVNMPPSLKMLGVSPQ 255
FTVDFGH+++P +N+PPSLKMLG+SPQ
Sbjct: 248 FTVDFGHVRLPEGLNVPPSLKMLGISPQ 275
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 76/133 (57%), Gaps = 9/133 (6%)
Query: 115 VNFGDVRIPKGFDFPRPQKIGQLAGVH-GVSSDPIVIVDAQTLLVPNFSYDGEAPDAKFW 173
+FGD P KIG L +H GVS D + VD++T+ + F+YDGEAP A F+
Sbjct: 23 ASFGDAAYPY-----YGTKIGALTRLHHGVSGD-VYAVDSRTIFIKKFNYDGEAPAAYFY 76
Query: 174 VGTGPHPSPQGI-RVPDENGKEEPL-RRYNRKTIVLTLPGELTVFEIGHFGVWCEAFTVD 231
VG PS +G R+ DE G L RRY K + L+LP T+ +I F VWC+ F V+
Sbjct: 77 VGNTARPSNEGAARLRDERGGTASLTRRYRNKDVTLSLPEGKTLRDIKWFSVWCDEFAVN 136
Query: 232 FGHIQIPANVNMP 244
FG + IP N++ P
Sbjct: 137 FGDVSIPPNLDFP 149
>sp|Q04202|TCB2_CAEBR Transposable element Tcb2 transposase OS=Caenorhabditis briggsae
PE=3 SV=1
Length = 273
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 34/136 (25%)
Query: 45 TVRIRLNENNLTAKRLHRAPELSIRNQRARSRKVENVVLKPVLGQIYIYIYHMHWTPAQQ 104
TVR RL + L +R + P +S +N+ AR + H+HW
Sbjct: 36 TVRRRLQDAGLHGRRPAKKPSISKKNRIAR---------------VAWARAHLHWGRQDW 80
Query: 105 ANVLFSDEPRVN-FGD-----VRIPKGFDFP---RPQKIGQLAG-------VHGVSSDPI 148
AN +FSDE + N FG +R P G F + Q + G G S DP+
Sbjct: 81 ANHVFSDESKFNLFGTDGIKWIRRPVGCRFDPSYQLQTVKHGGGSVMVWGCFSGTSMDPL 140
Query: 149 VIVDAQTLLVPNFSYD 164
+D+ ++ F Y+
Sbjct: 141 RRIDS---IMDRFVYE 153
>sp|P35072|TCB1_CAEBR Transposable element Tcb1 transposase OS=Caenorhabditis briggsae
PE=3 SV=1
Length = 273
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 16/75 (21%)
Query: 45 TVRIRLNENNLTAKRLHRAPELSIRNQRARSRKVENVVLKPVLGQIYIYIYHMHWTPAQQ 104
T+R RL L +R + P +S++N++AR + H+ W P +
Sbjct: 36 TIRRRLQVAGLHGRRPVKKPLVSLKNRKARVEWAKQ---------------HLSWGPREW 80
Query: 105 ANVLFSDEPRVN-FG 118
AN ++SDE + N FG
Sbjct: 81 ANHIWSDESKFNMFG 95
>sp|A1UEC5|Y1984_MYCSK Uncharacterized oxidoreductase Mkms_1984 OS=Mycobacterium sp.
(strain KMS) GN=Mkms_1984 PE=3 SV=1
Length = 283
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 22 CFATALEVRQELQDVRKVHLNEGTVRIRLNENNLTAKRLHRAPELSIRNQRARSRKVENV 81
A ALE L D V+ NE V +N + + + ++ +L++ +Q + +
Sbjct: 40 SVAAALEAGYRLIDTAAVYGNEAAVGRAVNASGIPREEIYVTTKLAVADQGFGTSQDAAR 99
Query: 82 VLKPVLGQIYIYIYHMHW 99
LG Y+ +Y +HW
Sbjct: 100 ASLERLGLDYVDLYLIHW 117
>sp|Q1BAN7|Y1938_MYCSS Uncharacterized oxidoreductase Mmcs_1938 OS=Mycobacterium sp.
(strain MCS) GN=Mmcs_1938 PE=3 SV=1
Length = 283
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 22 CFATALEVRQELQDVRKVHLNEGTVRIRLNENNLTAKRLHRAPELSIRNQRARSRKVENV 81
A ALE L D V+ NE V +N + + + ++ +L++ +Q + +
Sbjct: 40 SVAAALEAGYRLIDTAAVYGNEAAVGRAVNASGIPREEIYVTTKLAVADQGFGTSQDAAR 99
Query: 82 VLKPVLGQIYIYIYHMHW 99
LG Y+ +Y +HW
Sbjct: 100 ASLERLGLDYVDLYLIHW 117
>sp|A3PXS9|Y1918_MYCSJ Uncharacterized oxidoreductase Mjls_1918 OS=Mycobacterium sp.
(strain JLS) GN=Mjls_1918 PE=3 SV=1
Length = 283
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 22 CFATALEVRQELQDVRKVHLNEGTVRIRLNENNLTAKRLHRAPELSIRNQRARSRKVENV 81
A ALE L D V+ NE V +N + + + ++ +L++ +Q + +
Sbjct: 40 SVAAALEAGYRLIDTAAVYGNEAAVGRAVNASGIPREEIYVTTKLAVADQGFGTSQDAAR 99
Query: 82 VLKPVLGQIYIYIYHMHW 99
LG Y+ +Y +HW
Sbjct: 100 ASLERLGLDYVDLYLIHW 117
>sp|A0R008|SEPF_MYCS2 Cell division protein SepF OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=sepF PE=3 SV=1
Length = 214
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 109 FSDEPRVNFGDVRIPKGFDFPRPQKIGQLAG 139
F+DEPR G +R P+ FD P P ++G + G
Sbjct: 71 FADEPRFE-GRMRAPREFDRPAPARLGAMRG 100
>sp|Q8IUL8|CILP2_HUMAN Cartilage intermediate layer protein 2 OS=Homo sapiens GN=CILP2
PE=2 SV=2
Length = 1156
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 181 SPQGIRVPDENGKEEPLRRYNRKTIVLTLPGELTVFEIGHFGVWCEAFTVDFGHIQIPAN 240
+P +R D +G+ PLR Y ++ L PG ++G V V I +P +
Sbjct: 621 APSDLRFVDSDGELAPLRTYGMFSVDLRAPGSAEQLQVGPVAV-----RVAASQIHMPGH 675
Query: 241 VNMPPSLKMLGVSPQ 255
V +LK+ ++P+
Sbjct: 676 VE---ALKLWSLNPE 687
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,507,660
Number of Sequences: 539616
Number of extensions: 4520838
Number of successful extensions: 8685
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8676
Number of HSP's gapped (non-prelim): 12
length of query: 257
length of database: 191,569,459
effective HSP length: 115
effective length of query: 142
effective length of database: 129,513,619
effective search space: 18390933898
effective search space used: 18390933898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)