Query psy16970
Match_columns 257
No_of_seqs 219 out of 524
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 18:23:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hot_A Transposable element ma 99.0 2.9E-10 9.9E-15 102.7 6.8 100 10-130 73-180 (345)
2 1u78_A TC3 transposase, transp 98.7 1.4E-08 4.8E-13 80.2 4.4 74 8-101 63-137 (141)
3 2f7t_A MOS1 transposase; RNAse 97.6 8.1E-06 2.8E-10 70.3 0.4 50 63-127 3-59 (227)
4 3f2k_A Histone-lysine N-methyl 97.4 2E-05 6.8E-10 68.3 -0.6 75 64-168 4-86 (226)
5 2p5k_A Arginine repressor; DNA 95.2 0.034 1.2E-06 37.8 5.4 42 14-56 10-51 (64)
6 1pdn_C Protein (PRD paired); p 93.8 0.057 2E-06 40.6 4.1 45 9-54 79-128 (128)
7 1k78_A Paired box protein PAX5 92.4 0.19 6.6E-06 39.6 5.5 46 9-54 94-143 (149)
8 2k27_A Paired box protein PAX- 92.2 0.25 8.7E-06 39.5 5.9 49 8-56 86-138 (159)
9 1b4a_A Arginine repressor; hel 92.0 0.25 8.7E-06 40.6 5.7 47 10-57 6-52 (149)
10 1qbj_A Protein (double-strande 90.8 0.2 7E-06 37.0 3.6 38 9-52 10-50 (81)
11 1qgp_A Protein (double strande 89.6 0.28 9.7E-06 35.6 3.5 39 9-53 14-55 (77)
12 3eyy_A Putative iron uptake re 88.4 0.58 2E-05 37.5 4.9 47 9-56 19-68 (145)
13 3i4p_A Transcriptional regulat 88.3 0.56 1.9E-05 38.0 4.8 39 9-53 3-41 (162)
14 1jko_C HIN recombinase, DNA-in 88.2 0.51 1.7E-05 29.8 3.6 41 9-57 9-49 (52)
15 2fu4_A Ferric uptake regulatio 87.1 1 3.4E-05 32.0 5.0 44 8-52 16-61 (83)
16 1oyi_A Double-stranded RNA-bin 85.8 0.73 2.5E-05 34.4 3.8 38 9-53 17-54 (82)
17 1mzb_A Ferric uptake regulatio 85.7 1.2 4.1E-05 35.1 5.3 48 8-56 17-69 (136)
18 4a0z_A Transcription factor FA 85.3 0.86 2.9E-05 38.6 4.5 41 11-57 14-54 (190)
19 2o03_A Probable zinc uptake re 84.5 1.4 4.6E-05 34.5 5.1 47 9-56 11-61 (131)
20 2fe3_A Peroxide operon regulat 84.0 1.7 5.9E-05 34.6 5.6 49 8-57 21-73 (145)
21 3mwm_A ZUR, putative metal upt 83.8 1.4 4.8E-05 35.0 4.9 47 9-56 14-64 (139)
22 2e1c_A Putative HTH-type trans 83.6 1.5 5.3E-05 35.9 5.2 40 8-53 26-65 (171)
23 1xn7_A Hypothetical protein YH 83.2 1.6 5.4E-05 31.9 4.6 38 10-53 3-40 (78)
24 2xig_A Ferric uptake regulatio 83.0 1.9 6.4E-05 34.7 5.4 48 9-57 27-78 (150)
25 2cyy_A Putative HTH-type trans 82.8 1.7 5.7E-05 34.4 5.0 40 8-53 6-45 (151)
26 2w57_A Ferric uptake regulatio 82.7 1.4 4.9E-05 35.4 4.6 49 8-57 16-69 (150)
27 2dbb_A Putative HTH-type trans 82.5 1.9 6.3E-05 34.0 5.2 39 8-52 8-46 (151)
28 3lap_A Arginine repressor; arg 81.6 2.1 7.3E-05 35.9 5.4 46 11-57 22-67 (170)
29 2cfx_A HTH-type transcriptiona 81.5 2.2 7.7E-05 33.4 5.3 39 9-53 5-43 (144)
30 2cg4_A Regulatory protein ASNC 81.1 2.3 7.8E-05 33.6 5.2 39 8-52 7-45 (152)
31 4ets_A Ferric uptake regulatio 80.8 2.4 8.2E-05 34.6 5.4 49 9-57 33-86 (162)
32 3v4g_A Arginine repressor; vib 80.6 2.3 8E-05 36.1 5.3 47 10-57 34-81 (180)
33 2k02_A Ferrous iron transport 80.4 1.5 5.1E-05 32.9 3.6 41 11-57 4-44 (87)
34 2p5v_A Transcriptional regulat 80.3 2.5 8.5E-05 33.8 5.2 39 8-52 9-47 (162)
35 2ia0_A Putative HTH-type trans 80.2 2.4 8.3E-05 34.6 5.2 39 8-52 16-54 (171)
36 2htj_A P fimbrial regulatory p 79.4 3 0.0001 29.6 4.9 40 11-56 2-44 (81)
37 1i1g_A Transcriptional regulat 78.6 3.1 0.00011 32.1 5.1 38 9-52 4-41 (141)
38 2pn6_A ST1022, 150AA long hypo 78.0 3.1 0.00011 32.6 5.1 39 9-53 3-41 (150)
39 2w25_A Probable transcriptiona 77.1 3.7 0.00013 32.3 5.2 42 9-56 7-51 (150)
40 1j5y_A Transcriptional regulat 74.7 2.5 8.5E-05 34.9 3.8 36 11-52 23-59 (187)
41 1tc3_C Protein (TC3 transposas 72.3 8.8 0.0003 23.2 5.2 39 8-54 8-46 (51)
42 1pdn_C Protein (PRD paired); p 70.5 16 0.00053 26.7 7.1 57 8-72 20-82 (128)
43 3r0a_A Putative transcriptiona 70.2 6.8 0.00023 30.1 5.1 47 6-58 23-74 (123)
44 1u78_A TC3 transposase, transp 69.3 17 0.00058 27.3 7.2 62 7-76 8-71 (141)
45 3b73_A PHIH1 repressor-like pr 67.7 5.2 0.00018 31.0 3.9 49 7-59 11-62 (111)
46 2o3f_A Putative HTH-type trans 67.4 7.7 0.00026 29.6 4.9 47 8-60 20-70 (111)
47 2heo_A Z-DNA binding protein 1 67.1 6.8 0.00023 27.1 4.1 36 11-52 12-48 (67)
48 1p6r_A Penicillinase repressor 64.3 16 0.00054 25.5 5.7 49 8-58 8-59 (82)
49 3e7l_A Transcriptional regulat 63.7 12 0.00042 25.3 4.9 39 13-57 22-60 (63)
50 3iwf_A Transcription regulator 63.5 9.3 0.00032 29.1 4.6 45 9-59 17-65 (107)
51 1umq_A Photosynthetic apparatu 61.7 12 0.00042 27.3 4.8 38 12-55 43-80 (81)
52 1bia_A BIRA bifunctional prote 61.6 9.3 0.00032 34.3 4.9 39 11-55 7-48 (321)
53 3cuo_A Uncharacterized HTH-typ 60.7 13 0.00045 26.3 4.8 43 10-58 25-70 (99)
54 2d1h_A ST1889, 109AA long hypo 58.9 14 0.00048 26.2 4.7 42 11-58 23-68 (109)
55 1k78_A Paired box protein PAX5 58.8 37 0.0013 26.1 7.5 37 8-52 35-71 (149)
56 2ahq_A Sigma-54, RNA polymeras 58.7 17 0.00057 26.5 5.0 51 10-61 21-74 (76)
57 1xmk_A Double-stranded RNA-spe 58.2 13 0.00045 27.1 4.4 49 10-64 12-64 (79)
58 2jt1_A PEFI protein; solution 56.9 14 0.00049 26.6 4.4 35 12-52 7-47 (77)
59 1sfx_A Conserved hypothetical 56.8 18 0.00061 25.6 5.0 45 8-58 19-66 (109)
60 1y0u_A Arsenical resistance op 55.7 16 0.00056 26.2 4.6 41 9-57 31-74 (96)
61 1g2h_A Transcriptional regulat 55.7 17 0.00057 24.6 4.4 39 10-56 22-60 (61)
62 1u2w_A CADC repressor, cadmium 53.4 20 0.00067 27.2 4.9 61 10-76 43-109 (122)
63 3jth_A Transcription activator 53.4 17 0.00058 26.1 4.4 44 9-59 23-69 (98)
64 1ub9_A Hypothetical protein PH 52.0 12 0.00042 26.4 3.4 42 10-57 17-61 (100)
65 3pqk_A Biofilm growth-associat 51.2 20 0.00069 25.9 4.5 44 8-58 22-68 (102)
66 2l0k_A Stage III sporulation p 51.0 17 0.00058 27.2 4.1 34 13-53 11-44 (93)
67 2zkz_A Transcriptional repress 50.3 20 0.00069 26.1 4.4 38 9-52 27-64 (99)
68 1uly_A Hypothetical protein PH 50.1 22 0.00076 29.6 5.1 43 9-58 20-65 (192)
69 2x48_A CAG38821; archeal virus 48.2 30 0.001 22.0 4.6 24 23-52 31-54 (55)
70 2jn6_A Protein CGL2762, transp 48.0 43 0.0015 23.9 5.9 42 7-54 7-48 (97)
71 2k27_A Paired box protein PAX- 47.7 40 0.0014 26.3 6.1 38 8-53 28-65 (159)
72 1eto_A FIS, factor for inversi 44.4 32 0.0011 25.8 4.7 37 13-55 61-97 (98)
73 1hlv_A CENP-B, major centromer 44.1 35 0.0012 25.6 5.0 42 6-53 8-49 (131)
74 1iuf_A Centromere ABP1 protein 44.0 11 0.00039 29.7 2.3 48 6-53 12-60 (144)
75 2oqg_A Possible transcriptiona 43.4 28 0.00095 25.3 4.3 43 9-58 21-66 (114)
76 1ntc_A Protein (nitrogen regul 43.3 11 0.00039 27.4 2.0 16 40-55 75-90 (91)
77 1r1u_A CZRA, repressor protein 41.3 39 0.0013 24.6 4.8 43 9-58 26-71 (106)
78 3u1d_A Uncharacterized protein 40.3 37 0.0013 27.7 4.8 44 9-57 29-77 (151)
79 1lnz_A SPO0B-associated GTP-bi 39.5 55 0.0019 29.5 6.4 63 139-218 35-98 (342)
80 3tgn_A ADC operon repressor AD 38.7 51 0.0018 24.5 5.2 47 6-59 35-84 (146)
81 1fse_A GERE; helix-turn-helix 38.6 57 0.0019 21.6 5.0 36 10-53 15-50 (74)
82 2wte_A CSA3; antiviral protein 38.3 39 0.0013 29.2 5.0 61 6-72 149-213 (244)
83 1je8_A Nitrate/nitrite respons 38.0 53 0.0018 23.0 4.9 35 11-53 26-60 (82)
84 3hd4_A Nucleoprotein; beta pla 36.4 21 0.00071 29.0 2.6 42 161-213 70-125 (139)
85 2o8x_A Probable RNA polymerase 35.6 62 0.0021 21.1 4.7 36 11-53 20-55 (70)
86 1on2_A Transcriptional regulat 35.5 56 0.0019 24.6 5.0 51 14-70 13-66 (142)
87 1z6r_A MLC protein; transcript 34.6 42 0.0014 30.3 4.8 41 10-56 17-60 (406)
88 2k4b_A Transcriptional regulat 34.0 26 0.00089 26.2 2.8 46 12-59 38-86 (99)
89 2x4h_A Hypothetical protein SS 33.4 40 0.0014 25.3 3.8 46 20-72 28-76 (139)
90 1okr_A MECI, methicillin resis 33.1 59 0.002 23.8 4.7 49 9-59 10-61 (123)
91 3hrs_A Metalloregulator SCAR; 32.3 39 0.0013 28.2 3.9 53 18-76 15-70 (214)
92 1q1h_A TFE, transcription fact 32.2 39 0.0013 24.6 3.5 44 10-59 19-66 (110)
93 2kko_A Possible transcriptiona 32.0 57 0.0019 24.0 4.4 41 11-58 27-70 (108)
94 2h09_A Transcriptional regulat 32.0 66 0.0023 24.7 5.0 53 14-72 45-100 (155)
95 2lkp_A Transcriptional regulat 31.1 83 0.0028 23.0 5.2 41 10-57 33-76 (119)
96 1z05_A Transcriptional regulat 30.8 50 0.0017 30.2 4.7 41 10-56 40-83 (429)
97 2y75_A HTH-type transcriptiona 30.7 44 0.0015 25.2 3.7 50 1-56 2-56 (129)
98 1sfu_A 34L protein; protein/Z- 30.5 40 0.0014 24.6 3.1 40 19-64 25-67 (75)
99 2jsc_A Transcriptional regulat 30.4 48 0.0016 24.8 3.8 43 9-58 21-66 (118)
100 1tbx_A ORF F-93, hypothetical 30.4 99 0.0034 21.8 5.4 61 10-72 9-75 (99)
101 2p7v_B Sigma-70, RNA polymeras 30.2 39 0.0013 22.6 2.9 26 22-53 24-49 (68)
102 3c57_A Two component transcrip 29.7 70 0.0024 23.0 4.5 35 11-53 32-66 (95)
103 3nrv_A Putative transcriptiona 29.2 1E+02 0.0035 22.9 5.6 48 6-59 37-87 (148)
104 2g9w_A Conserved hypothetical 29.2 86 0.0029 23.9 5.2 50 8-59 8-61 (138)
105 3bdd_A Regulatory protein MARR 29.0 86 0.0029 23.0 5.0 46 8-59 30-78 (142)
106 3ulq_B Transcriptional regulat 28.7 96 0.0033 22.3 5.1 34 12-53 35-68 (90)
107 2elh_A CG11849-PA, LD40883P; s 28.5 93 0.0032 21.9 4.9 38 8-53 25-62 (87)
108 3bpv_A Transcriptional regulat 28.5 1E+02 0.0036 22.4 5.4 45 8-58 28-75 (138)
109 3hug_A RNA polymerase sigma fa 28.1 42 0.0014 23.9 2.9 26 22-53 52-77 (92)
110 1bja_A Transcription regulator 26.9 55 0.0019 24.7 3.5 43 10-57 17-62 (95)
111 1ku3_A Sigma factor SIGA; heli 26.8 56 0.0019 22.1 3.3 26 22-53 29-54 (73)
112 3f6o_A Probable transcriptiona 26.6 52 0.0018 24.5 3.3 44 8-58 17-63 (118)
113 3rkx_A Biotin-[acetyl-COA-carb 25.5 87 0.003 28.1 5.2 61 10-76 4-77 (323)
114 1stz_A Heat-inducible transcri 25.3 76 0.0026 28.7 4.8 36 17-56 30-68 (338)
115 1x3u_A Transcriptional regulat 25.0 1.2E+02 0.004 20.3 4.7 34 12-53 22-55 (79)
116 1udx_A The GTP-binding protein 25.0 91 0.0031 29.0 5.4 62 139-218 35-97 (416)
117 3f6v_A Possible transcriptiona 24.7 54 0.0019 26.0 3.3 44 9-59 58-104 (151)
118 1lj9_A Transcriptional regulat 24.7 1.1E+02 0.0038 22.5 5.0 46 8-59 28-76 (144)
119 2fa5_A Transcriptional regulat 24.5 1.3E+02 0.0045 22.6 5.5 45 8-58 48-95 (162)
120 1uxc_A FRUR (1-57), fructose r 24.0 73 0.0025 21.8 3.4 24 25-54 2-25 (65)
121 1r1t_A Transcriptional repress 23.8 1.3E+02 0.0043 22.7 5.2 42 10-58 47-91 (122)
122 3bj6_A Transcriptional regulat 23.8 1.2E+02 0.0042 22.5 5.1 46 8-59 39-87 (152)
123 3hhh_A Transcriptional regulat 23.6 1.3E+02 0.0044 22.7 5.1 44 13-57 17-63 (116)
124 2nnn_A Probable transcriptiona 23.6 1.1E+02 0.0037 22.3 4.7 45 8-58 37-84 (140)
125 2b0l_A GTP-sensing transcripti 23.5 41 0.0014 25.1 2.2 35 20-60 39-77 (102)
126 2a61_A Transcriptional regulat 23.5 1.2E+02 0.0041 22.3 5.0 45 9-59 33-80 (145)
127 2hsg_A Glucose-resistance amyl 23.5 78 0.0027 27.0 4.3 25 24-54 3-27 (332)
128 1qpz_A PURA, protein (purine n 23.2 43 0.0015 28.9 2.6 24 25-54 2-25 (340)
129 3mzy_A RNA polymerase sigma-H 23.0 1.1E+02 0.0037 22.8 4.6 26 22-53 123-148 (164)
130 2fbh_A Transcriptional regulat 22.5 1.4E+02 0.0049 21.8 5.2 45 9-59 37-85 (146)
131 2pex_A Transcriptional regulat 22.4 1.4E+02 0.0046 22.4 5.1 45 9-59 47-94 (153)
132 2qww_A Transcriptional regulat 22.3 1.4E+02 0.0046 22.4 5.1 44 9-58 41-87 (154)
133 1ku9_A Hypothetical protein MJ 22.3 1.3E+02 0.0046 21.9 5.0 43 11-59 28-74 (152)
134 3cjn_A Transcriptional regulat 22.2 1.3E+02 0.0046 22.7 5.1 44 9-58 52-98 (162)
135 1sd4_A Penicillinase repressor 22.1 1.7E+02 0.0058 21.3 5.5 49 10-60 11-62 (126)
136 4esf_A PADR-like transcription 21.9 1.2E+02 0.0042 22.9 4.7 44 13-57 15-61 (117)
137 2ofz_A Nucleocapsid protein; S 21.8 55 0.0019 26.5 2.7 8 161-168 75-82 (138)
138 3ech_A MEXR, multidrug resista 21.6 1.1E+02 0.0038 22.7 4.4 48 6-59 34-84 (142)
139 2rnj_A Response regulator prot 21.5 1E+02 0.0035 21.7 4.0 38 7-53 31-68 (91)
140 1jgs_A Multiple antibiotic res 21.4 1.5E+02 0.005 21.7 5.0 45 8-58 33-80 (138)
141 3g3z_A NMB1585, transcriptiona 21.4 1.4E+02 0.0048 22.1 5.0 45 8-58 30-77 (145)
142 2jpc_A SSRB; DNA binding prote 21.2 53 0.0018 21.1 2.2 34 12-53 4-37 (61)
143 2rdp_A Putative transcriptiona 21.0 1.5E+02 0.005 22.0 5.0 44 9-58 42-88 (150)
144 2kfs_A Conserved hypothetical 20.9 78 0.0027 25.9 3.5 35 20-60 28-62 (148)
145 2fbi_A Probable transcriptiona 20.6 1.1E+02 0.0038 22.3 4.2 45 9-59 36-83 (142)
146 2gxg_A 146AA long hypothetical 20.5 1.5E+02 0.0053 21.7 5.0 45 8-59 36-83 (146)
147 1tty_A Sigma-A, RNA polymerase 20.5 84 0.0029 22.1 3.3 26 22-53 37-62 (87)
148 4esb_A Transcriptional regulat 20.4 1.2E+02 0.0042 22.7 4.4 64 12-76 12-86 (115)
149 1s3j_A YUSO protein; structura 20.3 1.2E+02 0.0041 22.7 4.4 46 8-59 36-84 (155)
150 3bro_A Transcriptional regulat 20.3 1.8E+02 0.0063 21.1 5.4 45 9-59 34-83 (141)
151 2hr3_A Probable transcriptiona 20.2 1.3E+02 0.0044 22.2 4.5 44 10-59 36-83 (147)
152 2w48_A Sorbitol operon regulat 20.1 1E+02 0.0035 27.0 4.4 33 19-57 17-52 (315)
153 2dk5_A DNA-directed RNA polyme 20.1 1.5E+02 0.005 21.7 4.6 40 8-53 19-60 (91)
No 1
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=99.02 E-value=2.9e-10 Score=102.72 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=85.8
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhcCCcccccccCC-CcchHHHHhhhhhhhccccccccc
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNENNLTAKRLHRAP-ELSIRNQRARSRKVENVVLKPVLG 88 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l~~~~~~~~p-~l~~~~~~~r~~~~~~~~~~~~~~ 88 (257)
++..|...+..+|..|..+|+++| .+|.+||+|.|++.|+..+..+++| .|++.++++|++
T Consensus 73 ~~~~i~~~v~~~~~~t~~~ia~~l------~vs~~tV~r~L~~~g~~~k~~~~~~~~l~~~~~~~r~~------------ 134 (345)
T 3hot_A 73 EDAELQALLDEDDAQTQKQLAEQL------EVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKN------------ 134 (345)
T ss_dssp CHHHHHHHHHHCSCCCHHHHHHHT------TSCHHHHHHHHHHTTCEEEECCEESSCCCHHHHHHHHH------------
T ss_pred cHHHHHHHHHhCccchHHHHHHHH------CCCHHHHHHHHHHhCCeeeccccccccCChhhhhhhHH------------
Confidence 346777788899999999999988 4899999999999999987777766 999999999999
Q ss_pred hhhhhhhcccCC--hhhhccccccCCCccccce-----eEeCCCCCCCC
Q psy16970 89 QIYIYIYHMHWT--PAQQANVLFSDEPRVNFGD-----VRIPKGFDFPR 130 (257)
Q Consensus 89 ~~~~a~~h~~w~--~~~w~~vvwsdEsk~~fGs-----Vwrp~ge~~Pk 130 (257)
||..|+++. .++|..++|+||+.++++. +|.+.|+..+.
T Consensus 135 ---~~~~~l~~~~~~~~~~~Iv~~DE~~~~~~~~~~~~~w~~~g~~~~~ 180 (345)
T 3hot_A 135 ---TCEILLSRYKRKSFLHRIVTGDEKWIFFVNPKRKKSYVDPGQPATS 180 (345)
T ss_dssp ---HHHHHHHHHHHSCCGGGEEEEEEEEEESCCCCCCEEEECSSSCCCC
T ss_pred ---HHHHHHHhhCCcchHHhhhcccceeEEecCccceeeeccCCCCCCC
Confidence 999999874 3578999999999998642 99999876543
No 2
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=98.66 E-value=1.4e-08 Score=80.22 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=34.9
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhcCC-cccccccCCCcchHHHHhhhhhhhccccccc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNENNL-TAKRLHRAPELSIRNQRARSRKVENVVLKPV 86 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l-~~~~~~~~p~l~~~~~~~r~~~~~~~~~~~~ 86 (257)
+.+...|++. ..+|..|+.+|..+| |+.+|.+||+|.|++.|+ ..+++.++|.|++.|+++|++
T Consensus 63 ~~~~~~i~~~-~~~~~~s~~~i~~~l----g~~~s~~tV~r~l~~~g~~~~~k~~~~~~l~~~~~~~R~~---------- 127 (141)
T 1u78_A 63 VRDERNVIRA-ASNSCKTARDIRNEL----QLSASKRTILNVIKRSGVIVRQKLRPAPLLSADHKLKRLE---------- 127 (141)
T ss_dssp HHHHHHHHHH-HHHCCCCHHHHHHHT----TCCSCHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHH-HhCCCCCHHHHHHHH----CCCccHHHHHHHHHHCCCceeeecCCCCCCCHHHHHHHHH----------
Confidence 3455666666 667889999999988 468999999999999999 888899999999999999999
Q ss_pred cchhhhhhhcccCCh
Q psy16970 87 LGQIYIYIYHMHWTP 101 (257)
Q Consensus 87 ~~~~~~a~~h~~w~~ 101 (257)
||..|++|+.
T Consensus 128 -----~~~~~~~~~~ 137 (141)
T 1u78_A 128 -----FAKNNMGTHH 137 (141)
T ss_dssp ---------------
T ss_pred -----HHHHHccccc
Confidence 9999999874
No 3
>2f7t_A MOS1 transposase; RNAse-H like fold, DDD motif, DNA binding protein; 2.25A {Drosophila mauritiana}
Probab=97.64 E-value=8.1e-06 Score=70.27 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=37.3
Q ss_pred CCCcchHHHHhhhhhhhccccccccchhhhhhhcccC--ChhhhccccccCCCccccc-----eeEeCCCCC
Q psy16970 63 APELSIRNQRARSRKVENVVLKPVLGQIYIYIYHMHW--TPAQQANVLFSDEPRVNFG-----DVRIPKGFD 127 (257)
Q Consensus 63 ~p~l~~~~~~~r~~~~~~~~~~~~~~~~~~a~~h~~w--~~~~w~~vvwsdEsk~~fG-----sVwrp~ge~ 127 (257)
.|+||++|+++|++ ||..|++| +.++|.+++|+||+.++.. .+|.+.|+.
T Consensus 3 p~~Lt~~~k~~R~~---------------~~~~~l~~~~~~~f~~~Ivf~DE~~f~~~~~~~~~~W~~~ge~ 59 (227)
T 2f7t_A 3 PHELNERQMERRKN---------------TCEILLSRYKRKSFLHRIVTGDEKWIFFVNPKRKKSYVDPGQP 59 (227)
T ss_dssp CCCCCHHHHHHHHH---------------HHHHHHHHHHHSCCGGGEEEEEEEEEEBCCCC-----------
T ss_pred CccCCHHHHHHHHH---------------HHHHHHhccCCcchhhheEeccCCEEEecCccccccccCCCCC
Confidence 47999999999999 99999998 6788999999999999752 289888874
No 4
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=97.38 E-value=2e-05 Score=68.28 Aligned_cols=75 Identities=11% Similarity=0.062 Sum_probs=48.2
Q ss_pred CCcchHHHHhhhhhhhccccccccchhhhhhhcccCCh--hhhccccccCCCccccce-----eEeCCCCCCCCCccccc
Q psy16970 64 PELSIRNQRARSRKVENVVLKPVLGQIYIYIYHMHWTP--AQQANVLFSDEPRVNFGD-----VRIPKGFDFPRPQKIGQ 136 (257)
Q Consensus 64 p~l~~~~~~~r~~~~~~~~~~~~~~~~~~a~~h~~w~~--~~w~~vvwsdEsk~~fGs-----Vwrp~ge~~Pkpq~Ig~ 136 (257)
.+||++++++|++ ||..|+.+.. ++|.++||+||+.+.++. +|++.|+..+. .
T Consensus 4 ~~Lt~~~k~~R~~---------------~~~~ll~~~~~~~f~~~iv~~DE~~~~~~n~~~~~~W~~~ge~~~~--~--- 63 (226)
T 3f2k_A 4 HELTENQKNRRFE---------------VSSSLILRNHNEPFLDRIVTCDEKWILYDNRRRSAQWLDQEEAPKH--F--- 63 (226)
T ss_dssp CCCCHHHHHHHHH---------------HHHHHHHHHHHSCCGGGEEEEEEEEEESBCC---------------------
T ss_pred ccCCHHHHHHHHH---------------HHHHHHhhhcccchhHhEEEeccceEEEecccceeeecCCCCCCcc--c---
Confidence 3699999999999 9999998864 789999999999997642 89888874221 1
Q ss_pred ccc-ccccccccEEEEeCceEEecCeeccCCCC
Q psy16970 137 LAG-VHGVSSDPIVIVDAQTLLVPNFSYDGEAP 168 (257)
Q Consensus 137 l~~-~H~v~sg~V~ivD~~Tl~i~~FsydG~gP 168 (257)
... .|+ +.|+| +.+|+++|.++
T Consensus 64 ~~~~~~~---~~vmv-------~~~~s~~G~~~ 86 (226)
T 3f2k_A 64 PKPILHP---KKVMV-------TIWWSAAGLIH 86 (226)
T ss_dssp -----CC---CEEEE-------EEEEETTEEEE
T ss_pred cccccCC---cceEE-------EEEeecCCcEE
Confidence 112 343 34665 58999988764
No 5
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=95.25 E-value=0.034 Score=37.84 Aligned_cols=42 Identities=21% Similarity=0.186 Sum_probs=34.9
Q ss_pred HHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhcCCc
Q psy16970 14 IVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNENNLT 56 (257)
Q Consensus 14 i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l~ 56 (257)
|...+..+...|+.||.+.|...+ ..+|..||+|-|++.|+-
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~~-~~vs~~Tv~R~L~~lg~v 51 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQDG-YKVTQATVSRDIKELHLV 51 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHTT-CCCCHHHHHHHHHHHTCE
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhC-CCcCHHHHHHHHHHcCCE
Confidence 344556688999999999998764 789999999999988765
No 6
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=93.78 E-value=0.057 Score=40.60 Aligned_cols=45 Identities=11% Similarity=-0.019 Sum_probs=34.4
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCc-----cccHHHHHHHHHhcC
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKV-----HLNEGTVRIRLNENN 54 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~-----~~s~~Tvrr~L~~~~ 54 (257)
.....|.+.+..+|..|+.+|+.+|... |+ .+|.+||+|.|++.|
T Consensus 79 ~~~~~i~~~~~~~~~~s~~~i~~~l~~~-g~~~~~~~~s~~tv~r~l~~~~ 128 (128)
T 1pdn_C 79 EIENRIEEYKRSSPGMFSWEIREKLIRE-GVCDRSTAPSVSAISRLVRGRD 128 (128)
T ss_dssp THHHHHHHTTTTCTTCCHHHHHHHHHHT-SSSCSTTCCCHHHHHHHC----
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHc-CCccccCCcCHHHHHHHHHhcC
Confidence 3556677777788999999999999876 56 699999999998754
No 7
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=92.45 E-value=0.19 Score=39.62 Aligned_cols=46 Identities=15% Similarity=0.024 Sum_probs=38.0
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhcc----CccccHHHHHHHHHhcC
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVR----KVHLNEGTVRIRLNENN 54 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~----g~~~s~~Tvrr~L~~~~ 54 (257)
.....|.+.+..+|..|+.+|+.+|.+.. |..+|.+||+|.|++..
T Consensus 94 ~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~ 143 (149)
T 1k78_A 94 KVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKV 143 (149)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHh
Confidence 35667888888899999999999997764 67899999999998643
No 8
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=92.20 E-value=0.25 Score=39.51 Aligned_cols=49 Identities=12% Similarity=-0.045 Sum_probs=39.9
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhcc----CccccHHHHHHHHHhcCCc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVR----KVHLNEGTVRIRLNENNLT 56 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~----g~~~s~~Tvrr~L~~~~l~ 56 (257)
......|.+.+.++|..|+.+|..+|...+ +..+|.+||+|.|++..-.
T Consensus 86 ~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~ 138 (159)
T 2k27_A 86 PKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQ 138 (159)
T ss_dssp TTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCC
Confidence 345677888888899999999999998655 5789999999999875433
No 9
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=91.96 E-value=0.25 Score=40.62 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=41.3
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhcCCcc
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNENNLTA 57 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l~~ 57 (257)
-...|...+.+++..|-.|+.+.|+..| ..+|..||+|-|++.|+..
T Consensus 6 R~~~I~~li~~~~~~tq~eL~~~L~~~G-~~VtqaTisRDL~eL~~vK 52 (149)
T 1b4a_A 6 RHIKIREIIMSNDIETQDELVDRLREAG-FNVTQATVSRDIKEMQLVK 52 (149)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTT-CCCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHcC-CCcCHHHHHHHHHHcCCeE
Confidence 3456778889999999999999999885 9999999999999988764
No 10
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=90.79 E-value=0.2 Score=37.01 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=32.6
Q ss_pred hhhHHHHHHHhhCc---ccCHHHHHHHHHhccCccccHHHHHHHHHh
Q psy16970 9 MNDRFIVSQVLRNC---FATALEVRQELQDVRKVHLNEGTVRIRLNE 52 (257)
Q Consensus 9 ~~~r~i~r~v~~~~---~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~ 52 (257)
..++.|+..+..++ ..|+.||+++|. +|++||+++|.+
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg------vsr~tV~~~L~~ 50 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLG------TPKKEINRVLYS 50 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHT------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHC------cCHHHHHHHHHH
Confidence 45778889999999 999999999984 799999998765
No 11
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=89.63 E-value=0.28 Score=35.62 Aligned_cols=39 Identities=13% Similarity=0.018 Sum_probs=32.6
Q ss_pred hhhHHHHHHHhhCc---ccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 9 MNDRFIVSQVLRNC---FATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 9 ~~~r~i~r~v~~~~---~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
..++.|+..+..++ ..|+.||++.|. ++.+||+++|.+.
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg------vs~~tV~~~L~~L 55 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLG------TPKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHC------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHC------cCHHHHHHHHHHH
Confidence 34678888888899 999999999984 7899999987653
No 12
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=88.36 E-value=0.58 Score=37.54 Aligned_cols=47 Identities=21% Similarity=0.168 Sum_probs=37.3
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLT 56 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~ 56 (257)
.+++.|+..+......||.||.+.|...+ ..+|..||+|.|+ +.|+-
T Consensus 19 ~qR~~Il~~l~~~~h~ta~ei~~~l~~~~-~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 19 PQRQLVLEAVDTLEHATPDDILGEVRKTA-SGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHCCcE
Confidence 46677777776655899999999998764 7899999999886 45554
No 13
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=88.28 E-value=0.56 Score=37.99 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=34.5
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
..|+.|++...+|+..|..+|.+.| .+|+.||+++|++.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l------g~s~~tv~~rl~~L 41 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV------GLSTTPCWRRIQKM 41 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH------TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH------CcCHHHHHHHHHHH
Confidence 4688999999999999999999987 58999999987764
No 14
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=88.16 E-value=0.51 Score=29.75 Aligned_cols=41 Identities=5% Similarity=0.007 Sum_probs=28.2
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhcCCcc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNENNLTA 57 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l~~ 57 (257)
.+.+.++..... . .|..+|+..+ .+|..||++.|++.++..
T Consensus 9 ~~~~~i~~l~~~-g-~s~~~ia~~l------gvs~~Tv~r~l~~~~~~~ 49 (52)
T 1jko_C 9 HEQEQISRLLEK-G-HPRQQLAIIF------GIGVSTLYRYFPASSIKK 49 (52)
T ss_dssp THHHHHHHHHHT-T-CCHHHHHHTT------SCCHHHHHHHSCTTC---
T ss_pred HHHHHHHHHHHc-C-CCHHHHHHHH------CCCHHHHHHHHHHccccc
Confidence 344556665443 3 7888888775 489999999999888754
No 15
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=87.08 E-value=1 Score=32.03 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=34.1
Q ss_pred chhhHHHHHHHhhC--cccCHHHHHHHHHhccCccccHHHHHHHHHh
Q psy16970 8 SMNDRFIVSQVLRN--CFATALEVRQELQDVRKVHLNEGTVRIRLNE 52 (257)
Q Consensus 8 ~~~~r~i~r~v~~~--~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~ 52 (257)
...+..|+..+... ...|+.||.+.|...+ ..+|..||+|.|+.
T Consensus 16 t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~-~~is~~TVyR~L~~ 61 (83)
T 2fu4_A 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMG-EEIGLATVYRVLNQ 61 (83)
T ss_dssp CHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTT-CCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHH
Confidence 34556677777654 5799999999998754 67999999998874
No 16
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=85.81 E-value=0.73 Score=34.42 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=31.9
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
...+.|+...++++ .|+.||+.+| .+|+++|+++|+..
T Consensus 17 ~~~~~IL~lL~~~g-~sa~eLAk~L------giSk~aVr~~L~~L 54 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG-ATAAQLTRQL------NMEKREVNKALYDL 54 (82)
T ss_dssp HHHHHHHHHHSSST-EEHHHHHHHS------SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHH------CcCHHHHHHHHHHH
Confidence 45678888888888 9999999997 48999999998754
No 17
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=85.73 E-value=1.2 Score=35.08 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=36.9
Q ss_pred chhhHHHHHHHhhC--cccCHHHHHHHHHhccCccccHHHHHHHHHh---cCCc
Q psy16970 8 SMNDRFIVSQVLRN--CFATALEVRQELQDVRKVHLNEGTVRIRLNE---NNLT 56 (257)
Q Consensus 8 ~~~~r~i~r~v~~~--~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~---~~l~ 56 (257)
..+++.|+..+... ...||.||.+.|+..+ ..+|..||+|.|+. .|+-
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAG-EDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHCCcE
Confidence 34567777777654 4799999999998864 68999999998864 5544
No 18
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=85.34 E-value=0.86 Score=38.57 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=36.1
Q ss_pred hHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhcCCcc
Q psy16970 11 DRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNENNLTA 57 (257)
Q Consensus 11 ~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l~~ 57 (257)
...|+..+.++++.|..||.+.| .+|+.||||=|.+.+...
T Consensus 14 ~~~i~~~l~~~~~~~~~~la~~~------~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 14 REAIRQQIDSNPFITDHELSDLF------QVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHCCCEeHHHHHHHH------CCCHHHHHHHHHHhcCcc
Confidence 46788899999999999999998 489999999999887765
No 19
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=84.52 E-value=1.4 Score=34.55 Aligned_cols=47 Identities=21% Similarity=0.202 Sum_probs=36.1
Q ss_pred hhhHHHHHHHhh-CcccCHHHHHHHHHhccCccccHHHHHHHHHh---cCCc
Q psy16970 9 MNDRFIVSQVLR-NCFATALEVRQELQDVRKVHLNEGTVRIRLNE---NNLT 56 (257)
Q Consensus 9 ~~~r~i~r~v~~-~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~---~~l~ 56 (257)
.++..|+..+.. +...||.||.+.|+..+ ..+|..||+|.|+. .|+-
T Consensus 11 ~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~-~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 11 RQRAAISTLLETLDDFRSAQELHDELRRRG-ENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHHHHCCSCEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCCCE
Confidence 456667777754 45799999999998764 68999999998874 5544
No 20
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=83.96 E-value=1.7 Score=34.57 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=37.5
Q ss_pred chhhHHHHHHHhh-CcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcc
Q psy16970 8 SMNDRFIVSQVLR-NCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTA 57 (257)
Q Consensus 8 ~~~~r~i~r~v~~-~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~ 57 (257)
..+++.|+..+.. +...||.||.+.|+..+ ..+|..||+|.|+ +.|+-.
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKF-PNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGC-TTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCChhhHHHHHHHHHHCCCEE
Confidence 3456677777754 46799999999998764 6899999999876 466543
No 21
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=83.85 E-value=1.4 Score=34.99 Aligned_cols=47 Identities=15% Similarity=0.108 Sum_probs=36.1
Q ss_pred hhhHHHHHHHhh-CcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCc
Q psy16970 9 MNDRFIVSQVLR-NCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLT 56 (257)
Q Consensus 9 ~~~r~i~r~v~~-~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~ 56 (257)
.+++.|+..+.. +...||.||.+.|...+ ..+|..||+|.|+ +.|+-
T Consensus 14 ~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 14 RQRAAVSAALQEVEEFRSAQELHDMLKHKG-DAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHHHHTTCSSCEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHCCCE
Confidence 356667777755 35799999999998764 6899999999886 45554
No 22
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=83.61 E-value=1.5 Score=35.93 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=34.1
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
...++.|++.+.+++..|..||.++| .+|+.||+++|++.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l------glS~~tv~~rl~~L 65 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT------GLAESTIHERIRKL 65 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHH
Confidence 34678999999999999999999987 47999999977653
No 23
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=83.17 E-value=1.6 Score=31.94 Aligned_cols=38 Identities=11% Similarity=0.001 Sum_probs=32.3
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
.-..|+..+.++..+|..||.++| .+|+.||||-|.+-
T Consensus 3 ~L~~Il~~L~~~g~vsv~eLa~~l------~VS~~TIRrdL~~L 40 (78)
T 1xn7_A 3 SLIQVRDLLALRGRMEAAQISQTL------NTPQPMINAMLQQL 40 (78)
T ss_dssp CHHHHHHHHHHSCSBCHHHHHHHT------TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHH------CcCHHHHHHHHHHH
Confidence 345788889999999999999987 58999999988754
No 24
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=82.99 E-value=1.9 Score=34.70 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=36.6
Q ss_pred hhhHHHHHHHhh-CcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcc
Q psy16970 9 MNDRFIVSQVLR-NCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTA 57 (257)
Q Consensus 9 ~~~r~i~r~v~~-~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~ 57 (257)
.++..|+..+.. +...||.||.+.|+..+ ..+|..||+|.|+ +.|+-.
T Consensus 27 ~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 27 KQREEVVSVLYRSGTHLSPEEITHSIRQKD-KNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHHHHS-TTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCCcEE
Confidence 456667777755 36799999999998764 6899999999886 455543
No 25
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=82.78 E-value=1.7 Score=34.41 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=33.9
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
...++.|+..+.+++..|..||.++| .+|..||+++|++.
T Consensus 6 d~~~~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L 45 (151)
T 2cyy_A 6 DEIDKKIIKILQNDGKAPLREISKIT------GLAESTIHERIRKL 45 (151)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH------CSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHH
Confidence 45678899999999999999999988 47999999987653
No 26
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=82.72 E-value=1.4 Score=35.41 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=37.5
Q ss_pred chhhHHHHHHHhhC--cccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcc
Q psy16970 8 SMNDRFIVSQVLRN--CFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTA 57 (257)
Q Consensus 8 ~~~~r~i~r~v~~~--~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~ 57 (257)
..++..|+..+... ...||.||.+.|+..+ ..+|..||+|.|+ +.|+-.
T Consensus 16 T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 16 TLPRLKILEVLQQPECQHISAEELYKKLIDLG-EEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHCCcEE
Confidence 35666777777554 4799999999998864 6899999999887 456543
No 27
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=82.53 E-value=1.9 Score=34.00 Aligned_cols=39 Identities=18% Similarity=0.145 Sum_probs=33.4
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHh
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNE 52 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~ 52 (257)
...++.|+..+..++..|..||.+.| .+|+.||+++|++
T Consensus 8 d~~d~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~ 46 (151)
T 2dbb_A 8 DRVDMQLVKILSENSRLTYRELADIL------NTTRQRIARRIDK 46 (151)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHT------TSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHH
Confidence 45678899999999999999999987 4799999997765
No 28
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=81.59 E-value=2.1 Score=35.88 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=41.1
Q ss_pred hHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhcCCcc
Q psy16970 11 DRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNENNLTA 57 (257)
Q Consensus 11 ~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l~~ 57 (257)
...|.+.+.++...|=.||.+.|+..| ..++..||+|=|++.|+..
T Consensus 22 ~~~I~~iI~~~~I~tQeEL~~~L~~~G-i~vTQATlSRDikEL~lvK 67 (170)
T 3lap_A 22 QARIVAILSSAQVRSQNELAALLAAEG-IEVTQATLSRDLEELGAVK 67 (170)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTT-CCCCHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcC-CCcCchhHHHHHHHcCcEE
Confidence 446788889999999999999999985 9999999999999999764
No 29
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=81.49 E-value=2.2 Score=33.44 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=33.3
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
..++.|+..+.+++..|..||.+.| .+|+.||+++|++.
T Consensus 5 ~~d~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L 43 (144)
T 2cfx_A 5 QIDLNIIEELKKDSRLSMRELGRKI------KLSPPSVTERVRQL 43 (144)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHH------TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHH
Confidence 4577899999999999999999988 47999999887754
No 30
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=81.14 E-value=2.3 Score=33.56 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=33.3
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHh
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNE 52 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~ 52 (257)
...++.|+..+.+++..|..||.+.+ .+|+.||+++|++
T Consensus 7 d~~d~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~ 45 (152)
T 2cg4_A 7 DNLDRGILEALMGNARTAYAELAKQF------GVSPETIHVRVEK 45 (152)
T ss_dssp CHHHHHHHHHHHHCTTSCHHHHHHHH------TSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHH
Confidence 34577899999999999999999988 4799999988765
No 31
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=80.77 E-value=2.4 Score=34.63 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=37.1
Q ss_pred hhhHHHHHHHhhC-cccCHHHHHHHHHhcc-CccccHHHHHHHHH---hcCCcc
Q psy16970 9 MNDRFIVSQVLRN-CFATALEVRQELQDVR-KVHLNEGTVRIRLN---ENNLTA 57 (257)
Q Consensus 9 ~~~r~i~r~v~~~-~~~ta~~i~~~l~~~~-g~~~s~~Tvrr~L~---~~~l~~ 57 (257)
.+++.|+..+... ...||.||-+.|.... +..+|..||+|.|+ +.|+-.
T Consensus 33 ~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 33 KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4567777777554 6799999999998751 36899999999886 456543
No 32
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=80.65 E-value=2.3 Score=36.06 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=41.6
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccc-cHHHHHHHHHhcCCcc
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHL-NEGTVRIRLNENNLTA 57 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~-s~~Tvrr~L~~~~l~~ 57 (257)
-...|.+.+.++...|=.||.+.|+..| ..+ +..||.|=|++.|+..
T Consensus 34 r~~~I~eiI~~~~I~TQeEL~~~L~~~G-i~viTQATvSRDIkELglvK 81 (180)
T 3v4g_A 34 LVRAFKALLKEERFGSQGEIVEALKQEG-FENINQSKVSRMLTKFGAVR 81 (180)
T ss_dssp HHHHHHHHHHHTCCCSHHHHHHHHHHTT-CTTCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhhCCcCCHHHHHHHHHHCC-CcccCHHHHHHHHHHcCCEE
Confidence 3456788889999999999999999985 888 9999999999999875
No 33
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=80.43 E-value=1.5 Score=32.91 Aligned_cols=41 Identities=7% Similarity=-0.057 Sum_probs=33.6
Q ss_pred hHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhcCCcc
Q psy16970 11 DRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNENNLTA 57 (257)
Q Consensus 11 ~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l~~ 57 (257)
-..|+..+.++..+|..||.+.| .+|+.||||-|.+-.-.+
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l------~VS~~TIRrDL~~Le~~G 44 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARL------QTPQPLIDAMLERMEAMG 44 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHT------TCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCcHHHHHHHH------CcCHHHHHHHHHHHHHCC
Confidence 45788888999999999999987 589999999887644333
No 34
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=80.32 E-value=2.5 Score=33.78 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=33.1
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHh
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNE 52 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~ 52 (257)
...++.|+..+.+++..|..||.+.+ .+|..||+++|++
T Consensus 9 d~~~~~il~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~ 47 (162)
T 2p5v_A 9 DKTDIKILQVLQENGRLTNVELSERV------ALSPSPCLRRLKQ 47 (162)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHH
Confidence 34577899999999999999999987 4799999988765
No 35
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=80.22 E-value=2.4 Score=34.64 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=33.9
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHh
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNE 52 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~ 52 (257)
...++.|+..+.+++..|..||.+.| .+|+.||+++|++
T Consensus 16 d~~d~~IL~~L~~~~~~s~~eLA~~l------glS~~tv~~~l~~ 54 (171)
T 2ia0_A 16 DDLDRNILRLLKKDARLTISELSEQL------KKPESTIHFRIKK 54 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHH
Confidence 45678999999999999999999988 4899999988765
No 36
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=79.40 E-value=3 Score=29.57 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=31.1
Q ss_pred hHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHh---cCCc
Q psy16970 11 DRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNE---NNLT 56 (257)
Q Consensus 11 ~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~---~~l~ 56 (257)
++.|+..+.+++..|..||++.+ .+|..||++.|+. .|+-
T Consensus 2 r~~Il~~L~~~~~~s~~eLa~~l------gvs~~tv~r~L~~L~~~GlI 44 (81)
T 2htj_A 2 KNEILEFLNRHNGGKTAEIAEAL------AVTDYQARYYLLLLEKAGMV 44 (81)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHH------TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCE
Confidence 45677888777789999999988 4799999987664 5544
No 37
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=78.65 E-value=3.1 Score=32.08 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=31.6
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHh
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNE 52 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~ 52 (257)
..++.|+..+..++..|..||++.+ .+|+.||+++|++
T Consensus 4 ~~~~~il~~L~~~~~~~~~ela~~l------g~s~~tv~~~l~~ 41 (141)
T 1i1g_A 4 ERDKIILEILEKDARTPFTEIAKKL------GISETAVRKRVKA 41 (141)
T ss_dssp SHHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHH
Confidence 3567788888888899999999988 4799999987765
No 38
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=78.05 E-value=3.1 Score=32.56 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=32.8
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
..+..|++.+..++..|..||.+.| .+|+.||+++|++.
T Consensus 3 ~~~~~il~~L~~~~~~~~~ela~~l------g~s~~tv~~~l~~L 41 (150)
T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREI------RIPKATLSYRIKKL 41 (150)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHH------TSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHH
Confidence 3577889999999999999999988 47999999887653
No 39
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=77.10 E-value=3.7 Score=32.27 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=34.1
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHh---cCCc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNE---NNLT 56 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~---~~l~ 56 (257)
..++.|+..+..++..|..||.+.+ .+|..||+++|++ .|+-
T Consensus 7 ~~~~~iL~~L~~~~~~s~~ela~~l------g~s~~tv~~~l~~L~~~G~i 51 (150)
T 2w25_A 7 DIDRILVRELAADGRATLSELATRA------GLSVSAVQSRVRRLESRGVV 51 (150)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCE
Confidence 4567888888889999999999988 4799999987764 5544
No 40
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=74.65 E-value=2.5 Score=34.92 Aligned_cols=36 Identities=14% Similarity=0.120 Sum_probs=28.4
Q ss_pred hHHHHHHHhhC-cccCHHHHHHHHHhccCccccHHHHHHHHHh
Q psy16970 11 DRFIVSQVLRN-CFATALEVRQELQDVRKVHLNEGTVRIRLNE 52 (257)
Q Consensus 11 ~r~i~r~v~~~-~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~ 52 (257)
...|+..+.++ ...|+.||+++| .+|++||+|.|..
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l------~vS~~Ti~rdi~~ 59 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEEL------SVSRQVIVQDIAY 59 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHH------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHH------CcCHHHHHHHHHH
Confidence 45677777765 459999999988 5899999998764
No 41
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=72.34 E-value=8.8 Score=23.16 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=27.1
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhcC
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNENN 54 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~ 54 (257)
..+...|+..... ..|..+|+..| .+|..||++.+++..
T Consensus 8 ~~~~~~i~~~~~~--g~s~~~IA~~l------gis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 8 DTERAQLDVMKLL--NVSLHEMSRKI------SRSRHCIRVYLKDPV 46 (51)
T ss_dssp HHHHHHHHHHHHT--TCCHHHHHHHH------TCCHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHH------CcCHHHHHHHHhhHH
Confidence 3344455555433 36899999887 489999999997643
No 42
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=70.46 E-value=16 Score=26.74 Aligned_cols=57 Identities=12% Similarity=0.026 Sum_probs=34.7
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc---CCccccc--c-cCCCcchHHHH
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN---NLTAKRL--H-RAPELSIRNQR 72 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~---~l~~~~~--~-~~p~l~~~~~~ 72 (257)
...+..|+..... ..|..+|+..| .+|..||++.+++. |....+. . +.+.|++..+.
T Consensus 20 ~~~r~~i~~~~~~--g~s~~~ia~~l------gis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~ 82 (128)
T 1pdn_C 20 NNIRLKIVEMAAD--GIRPCVISRQL------RVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIEN 82 (128)
T ss_dssp HHHHHHHHHHHHT--TCCHHHHHHHH------TCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHH
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHH------CcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHH
Confidence 3445566666543 46888998887 47999999888763 4322211 1 34456665443
No 43
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=70.15 E-value=6.8 Score=30.09 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=35.8
Q ss_pred CCchhhHHHHHHHhhCcc--cCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 6 GASMNDRFIVSQVLRNCF--ATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 6 ~~~~~~r~i~r~v~~~~~--~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
|=...+..|+..+.+++. .|+.||...|. ++.+||+|.|. +.|+-.+
T Consensus 23 gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~------~s~sTV~r~L~~L~~~GlV~r 74 (123)
T 3r0a_A 23 NLTKADLNVMKSFLNEPDRWIDTDALSKSLK------LDVSTVQRSVKKLHEKEILQR 74 (123)
T ss_dssp TCCHHHHHHHHHHHHSTTCCEEHHHHHHHHT------SCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHC------cCHHHHHHHHHHHHHCCCEEe
Confidence 444567778888877766 89999999884 79999998776 4776654
No 44
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=69.32 E-value=17 Score=27.33 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=38.2
Q ss_pred CchhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhcCCccc--ccccCCCcchHHHHhhhh
Q psy16970 7 ASMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNENNLTAK--RLHRAPELSIRNQRARSR 76 (257)
Q Consensus 7 ~~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l~~~--~~~~~p~l~~~~~~~r~~ 76 (257)
+......|+..... ..|..+|+..| .+|.+||++.+++..-.+. ...+.+.|+......-++
T Consensus 8 s~~~r~~i~~~~~~--G~s~~~ia~~l------gis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~ 71 (141)
T 1u78_A 8 SDTERAQLDVMKLL--NVSLHEMSRKI------SRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIR 71 (141)
T ss_dssp CHHHHHHHHHHHHT--TCCHHHHHHHH------TCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc--CCCHHHHHHHH------CcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHH
Confidence 34445556655533 37899999887 4899999999986432221 233455677766543333
No 45
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=67.67 E-value=5.2 Score=31.00 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=37.1
Q ss_pred CchhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccc
Q psy16970 7 ASMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKR 59 (257)
Q Consensus 7 ~~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~ 59 (257)
-...|+.|+..+.++...|+.+|...+. +.+|..+|+++|+ +.|+-.++
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~----~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDE----IRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTT----CCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHh----cCCCHHHHHHHHHHHHHCCCEEec
Confidence 3456788999888878899999998662 3689999998866 46666543
No 46
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=67.42 E-value=7.7 Score=29.62 Aligned_cols=47 Identities=13% Similarity=0.025 Sum_probs=37.5
Q ss_pred chhhHHHHHHHhhCc----ccCHHHHHHHHHhccCccccHHHHHHHHHhcCCccccc
Q psy16970 8 SMNDRFIVSQVLRNC----FATALEVRQELQDVRKVHLNEGTVRIRLNENNLTAKRL 60 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~----~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l~~~~~ 60 (257)
....+.|...+..+| ..|..||+++. .+|..||.|-.+..|+.+..-
T Consensus 20 s~~e~~ia~yil~~~~~~~~~si~elA~~~------~vS~aTv~Rf~kklG~~gf~e 70 (111)
T 2o3f_A 20 PPSERKLADYILAHPHXAIESTVNEISALA------NSSDAAVIRLCXSLGLKGFQD 70 (111)
T ss_dssp CHHHHHHHHHHHHCHHHHHTCCHHHHHHHT------TCCHHHHHHHHHHTTCSSHHH
T ss_pred CHHHHHHHHHHHHChHHHHhcCHHHHHHHH------CCCHHHHHHHHHHcCCCCHHH
Confidence 345677888888884 57888888764 689999999999999998543
No 47
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=67.13 E-value=6.8 Score=27.11 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=28.3
Q ss_pred hHHHHHHHhhC-cccCHHHHHHHHHhccCccccHHHHHHHHHh
Q psy16970 11 DRFIVSQVLRN-CFATALEVRQELQDVRKVHLNEGTVRIRLNE 52 (257)
Q Consensus 11 ~r~i~r~v~~~-~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~ 52 (257)
++.|+..+..+ +..|..||++.| .+|+.||.+.|+.
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~l------glsr~tv~~~l~~ 48 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKC------QVPKKTLNQVLYR 48 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHH------CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHH------CcCHHHHHHHHHH
Confidence 45677777655 579999999988 4789999987764
No 48
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=64.30 E-value=16 Score=25.53 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=34.6
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
......|+..+..+...|+.||...|... ..++..||.+.|. +.|+-.+
T Consensus 8 t~~e~~vL~~L~~~~~~t~~ei~~~l~~~--~~~s~~Tv~~~l~rL~~kGlv~r 59 (82)
T 1p6r_A 8 SDAELEVMKVIWKHSSINTNEVIKELSKT--STWSPKTIQTMLLRLIKKGALNH 59 (82)
T ss_dssp CHHHHHHHHHHHTSSSEEHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHcCCCCCHHHHHHHHhhc--CCccHHHHHHHHHHHHHCCCeEE
Confidence 34455667777667789999999999753 3478888887655 5666543
No 49
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=63.66 E-value=12 Score=25.32 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=27.0
Q ss_pred HHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhcCCcc
Q psy16970 13 FIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNENNLTA 57 (257)
Q Consensus 13 ~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l~~ 57 (257)
.++..+.+.+.-+-.+.++.| .+|.+|++++|++.|+..
T Consensus 22 ~~i~~aL~~~~gn~~~aA~~L------Gisr~tL~rklkk~gi~~ 60 (63)
T 3e7l_A 22 IFIEEKLREYDYDLKRTAEEI------GIDLSNLYRKIKSLNIRV 60 (63)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH------TCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHH------CcCHHHHHHHHHHhCCCC
Confidence 344444444555556666665 589999999999999864
No 50
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=63.53 E-value=9.3 Score=29.14 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=37.2
Q ss_pred hhhHHHHHHHhhCc----ccCHHHHHHHHHhccCccccHHHHHHHHHhcCCcccc
Q psy16970 9 MNDRFIVSQVLRNC----FATALEVRQELQDVRKVHLNEGTVRIRLNENNLTAKR 59 (257)
Q Consensus 9 ~~~r~i~r~v~~~~----~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l~~~~ 59 (257)
...+.|...+..+| ..|..||+++. .+|+.||.|-.++.|+.+..
T Consensus 17 ~~e~~ia~yil~~~~~~~~~si~elA~~~------~vS~aTv~Rf~kkLGf~gf~ 65 (107)
T 3iwf_A 17 KNEKKIAQFILNYPHKVVNMTSQEIANQL------ETSSTSIIRLSKKVTPGGFN 65 (107)
T ss_dssp HHHHHHHHHHHHCHHHHTTCCHHHHHHHH------TSCHHHHHHHHHHHSTTHHH
T ss_pred HHHHHHHHHHHhCHHHHHHCCHHHHHHHH------CCCHHHHHHHHHHhCCCCHH
Confidence 45677888888885 68888888875 68999999999999999853
No 51
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=61.70 E-value=12 Score=27.32 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=27.0
Q ss_pred HHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhcCC
Q psy16970 12 RFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNENNL 55 (257)
Q Consensus 12 r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l 55 (257)
+.++.++.+.+.-+..+.++.| .+|++|++|+|++.|+
T Consensus 43 r~~I~~aL~~~~GN~s~AA~~L------GISR~TLyrKLkk~gi 80 (81)
T 1umq_A 43 WEHIQRIYEMCDRNVSETARRL------NMHRRTLQRILAKRSP 80 (81)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH------TSCHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHh------CCCHHHHHHHHHHhCC
Confidence 4445555555556666777766 4899999999998876
No 52
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=61.56 E-value=9.3 Score=34.29 Aligned_cols=39 Identities=5% Similarity=0.186 Sum_probs=31.9
Q ss_pred hHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCC
Q psy16970 11 DRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNL 55 (257)
Q Consensus 11 ~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l 55 (257)
+..|+..+..+.+.|..|+.++| .+|++||+|.|+ +.|+
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l------~vS~~ti~r~l~~L~~~G~ 48 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETL------GMSRAAINKHIQTLRDWGV 48 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHH------TSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCcCHHHHHHHH------CCCHHHHHHHHHHHHhCCC
Confidence 45677888888899999999988 489999998876 4554
No 53
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=60.69 E-value=13 Score=26.28 Aligned_cols=43 Identities=14% Similarity=0.104 Sum_probs=32.3
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
.+..|+..+..++..|..||.+.+ .+|..||++.|+ +.|+-.+
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~l------~is~~tvs~~l~~L~~~glv~~ 70 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRIT------GLSASATSQHLARMRDEGLIDS 70 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHHH------CCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEE
Confidence 455677777777789999999988 478999998766 4676544
No 54
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=58.86 E-value=14 Score=26.25 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=29.4
Q ss_pred hHHHHHHH-hhCcccCHHHHHHHHHhccCccccHHHHHHHHHh---cCCccc
Q psy16970 11 DRFIVSQV-LRNCFATALEVRQELQDVRKVHLNEGTVRIRLNE---NNLTAK 58 (257)
Q Consensus 11 ~r~i~r~v-~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~---~~l~~~ 58 (257)
...++..+ ..++..|..||.+.+ .+|..||+|.|+. .|+-.+
T Consensus 23 ~~~~l~~l~~~~~~~t~~ela~~l------~is~~tv~~~l~~L~~~g~v~~ 68 (109)
T 2d1h_A 23 DVAVLLKMVEIEKPITSEELADIF------KLSKTTVENSLKKLIELGLVVR 68 (109)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEe
Confidence 34444444 437789999999987 4799999988664 566544
No 55
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=58.79 E-value=37 Score=26.08 Aligned_cols=37 Identities=16% Similarity=0.211 Sum_probs=27.1
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHh
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNE 52 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~ 52 (257)
...+..|+..+.. ..|..+|+..| .+|.+||++-+++
T Consensus 35 ~e~r~~iv~~~~~--G~s~~~iA~~l------gis~~TV~rw~~~ 71 (149)
T 1k78_A 35 DVVRQRIVELAHQ--GVRPCDISRQL------RVSHGCVSKILGR 71 (149)
T ss_dssp HHHHHHHHHHHHT--TCCHHHHHHHH------TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHH------CcCHHHHHHHHHH
Confidence 4455666666643 47889998887 4799999988875
No 56
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=58.68 E-value=17 Score=26.53 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=33.3
Q ss_pred hhHHHHHHHhhC-cc--cCHHHHHHHHHhccCccccHHHHHHHHHhcCCcccccc
Q psy16970 10 NDRFIVSQVLRN-CF--ATALEVRQELQDVRKVHLNEGTVRIRLNENNLTAKRLH 61 (257)
Q Consensus 10 ~~r~i~r~v~~~-~~--~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l~~~~~~ 61 (257)
-...|...+... +. .|-.+|...|+.. |+.++++||-..-.+.|+..-+.+
T Consensus 21 Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~-Gi~IaRRTVaKYRe~l~Ip~s~~R 74 (76)
T 2ahq_A 21 LMKLIKEIVENEDKRKPYSDQEIANILKEK-GFKVARRTVAKYREMLGIPSSRER 74 (76)
T ss_dssp HHHHHHHHGGGCCSSSCCCHHHHHHHHTTT-SSCCCHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-CCCccHHHHHHHHHHcCCCchhhc
Confidence 334444444332 22 7889999999887 599999999999999998764443
No 57
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=58.17 E-value=13 Score=27.10 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=36.2
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccccHH-HHHHHHHh---cCCcccccccCC
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEG-TVRIRLNE---NNLTAKRLHRAP 64 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~-Tvrr~L~~---~~l~~~~~~~~p 64 (257)
....|+..+++..-.||.+|+++|. ++.. +|++.|.. .|+-.+.....|
T Consensus 12 ~~~~IL~~Lk~~g~~ta~eiA~~Lg------it~~~aVr~hL~~Le~eGlV~~~~~gRP 64 (79)
T 1xmk_A 12 IKEKICDYLFNVSDSSALNLAKNIG------LTKARDINAVLIDMERQGDVYRQGTTPP 64 (79)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHC------GGGHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHcC------CCcHHHHHHHHHHHHHCCCEEecCCCCC
Confidence 4677888888888999999999984 6777 89988764 666654433334
No 58
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=56.93 E-value=14 Score=26.64 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=25.4
Q ss_pred HHHHHHHhhC------cccCHHHHHHHHHhccCccccHHHHHHHHHh
Q psy16970 12 RFIVSQVLRN------CFATALEVRQELQDVRKVHLNEGTVRIRLNE 52 (257)
Q Consensus 12 r~i~r~v~~~------~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~ 52 (257)
+.|+..+.+. ...|..||++.|. +|..||++-|..
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lg------vS~~TVrr~L~~ 47 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAG------LSIYQVRLYLEQ 47 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHT------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHC------CCHHHHHHHHHH
Confidence 4455555443 6689999999884 589999987764
No 59
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=56.82 E-value=18 Score=25.58 Aligned_cols=45 Identities=27% Similarity=0.262 Sum_probs=33.0
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
...+..|+..+..++..|..+|.+.+ .++.+||++.|+ +.|+-.+
T Consensus 19 ~~~~~~il~~l~~~~~~s~~ela~~l------~is~~tv~~~l~~L~~~glv~~ 66 (109)
T 1sfx_A 19 KPSDVRIYSLLLERGGMRVSEIAREL------DLSARFVRDRLKVLLKRGFVRR 66 (109)
T ss_dssp CHHHHHHHHHHHHHCCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEE
Confidence 34456677777777779999999988 478899998766 4665543
No 60
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=55.75 E-value=16 Score=26.24 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=29.6
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTA 57 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~ 57 (257)
..+..|+..+ . ...|..||.+.+ .+|..||++.|+ +.|+-.
T Consensus 31 ~~r~~Il~~L-~-~~~~~~eLa~~l------~is~~tv~~~L~~L~~~Glv~ 74 (96)
T 1y0u_A 31 PVRRKILRML-D-KGRSEEEIMQTL------SLSKKQLDYHLKVLEAGFCIE 74 (96)
T ss_dssp HHHHHHHHHH-H-TTCCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHH-c-CCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEE
Confidence 3455677777 4 448999999887 479999998765 466554
No 61
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=55.72 E-value=17 Score=24.61 Aligned_cols=39 Identities=8% Similarity=0.145 Sum_probs=26.6
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhcCCc
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNENNLT 56 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l~ 56 (257)
+...|..+..+ + -+-.+.++.| .+|+.|++++|++.|+.
T Consensus 22 Er~~I~~aL~~-~-gn~~~aA~~L------GIsr~tL~rklkk~gi~ 60 (61)
T 1g2h_A 22 EAQVLKLFYAE-Y-PSTRKLAQRL------GVSHTAIANKLKQYGIG 60 (61)
T ss_dssp HHHHHHHHHHH-S-CSHHHHHHHT------TSCTHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHH-h-CCHHHHHHHh------CCCHHHHHHHHHHhCCC
Confidence 44455444444 4 5666666665 58999999999998863
No 62
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=53.42 E-value=20 Score=27.24 Aligned_cols=61 Identities=11% Similarity=0.028 Sum_probs=38.7
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHh---cCCcccccc-c--CCCcchHHHHhhhh
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNE---NNLTAKRLH-R--APELSIRNQRARSR 76 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~---~~l~~~~~~-~--~p~l~~~~~~~r~~ 76 (257)
.+..|+..+..++..|..||.+.| .+|.+||.+.|+. .|+-.++.. + .-.|+......-++
T Consensus 43 ~rl~IL~~L~~~~~~s~~eLa~~l------~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~ 109 (122)
T 1u2w_A 43 NRAKITYALCQDEELCVCDIANIL------GVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMM 109 (122)
T ss_dssp HHHHHHHHHHHSSCEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHH
Confidence 345677777767779999999987 4789999987665 776543321 1 23344444444444
No 63
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=53.40 E-value=17 Score=26.06 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=32.2
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKR 59 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~ 59 (257)
..+..|+..+.+ +..|..||.+.+ .+|.+||++.|+ +.|+-.++
T Consensus 23 ~~r~~Il~~L~~-~~~~~~ela~~l------~is~~tvs~~L~~L~~~Glv~~~ 69 (98)
T 3jth_A 23 ERRLQILCMLHN-QELSVGELCAKL------QLSQSALSQHLAWLRRDGLVTTR 69 (98)
T ss_dssp HHHHHHHHHTTT-SCEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 345567777665 678999999988 478999998766 47766443
No 64
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=51.96 E-value=12 Score=26.41 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=31.1
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcc
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTA 57 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~ 57 (257)
.+..|+..+..+...|..||.+.+ .+|.+||.+.|+ +.|+-.
T Consensus 17 ~~~~iL~~L~~~~~~~~~ela~~l------~is~~tvs~~l~~L~~~gli~ 61 (100)
T 1ub9_A 17 VRLGIMIFLLPRRKAPFSQIQKVL------DLTPGNLDSHIRVLERNGLVK 61 (100)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHT------TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEE
Confidence 455666766656679999999987 478999998766 467654
No 65
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=51.22 E-value=20 Score=25.91 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=31.4
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
...+..|++.+..++ .|..||.+.+ .+|..||++.|+ +.|+-.+
T Consensus 22 ~~~r~~Il~~L~~~~-~~~~ela~~l------~is~~tvs~~L~~L~~~Glv~~ 68 (102)
T 3pqk_A 22 HPVRLMLVCTLVEGE-FSVGELEQQI------GIGQPTLSQQLGVLRESGIVET 68 (102)
T ss_dssp SHHHHHHHHHHHTCC-BCHHHHHHHH------TCCTTHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHhCC-CCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEE
Confidence 345667777776655 8999999988 367888887765 4676643
No 66
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=51.03 E-value=17 Score=27.21 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=25.7
Q ss_pred HHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 13 FIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 13 ~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
.|...+.... .|..||+..+ .||..||+|-|+..
T Consensus 11 ~I~~~l~~~~-~ti~dlA~~~------gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 11 KIGKYIVETK-KTVRVIAKEF------GVSKSTVHKDLTER 44 (93)
T ss_dssp HHHHHHHHHC-CCHHHHHHHH------TSCHHHHHHHHTTH
T ss_pred HHHHHHHHcC-CCHHHHHHHH------CCCHHHHHHHHcCC
Confidence 4555555444 8999998877 48999999999764
No 67
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=50.33 E-value=20 Score=26.12 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=29.2
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHh
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNE 52 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~ 52 (257)
-.+..|+..+..+...|+.|+.+.| .+|.+||++.|+.
T Consensus 27 ~~Rl~IL~~l~~~~~~~~~ela~~l------~is~stvs~hL~~ 64 (99)
T 2zkz_A 27 PMRLKIVNELYKHKALNVTQIIQIL------KLPQSTVSQHLCK 64 (99)
T ss_dssp HHHHHHHHHHHHHSCEEHHHHHHHH------TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHH------CcCHHHHHHHHHH
Confidence 3455677666666669999999987 4789999988875
No 68
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=50.07 E-value=22 Score=29.55 Aligned_cols=43 Identities=19% Similarity=0.097 Sum_probs=32.6
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
..++.|+..+. +...|..||++.+ .+|..||+++|. +.|+-.+
T Consensus 20 ~~~~~IL~~L~-~~~~s~~eLA~~l------glS~stv~~~l~~Le~~GlI~~ 65 (192)
T 1uly_A 20 DTRRKILKLLR-NKEMTISQLSEIL------GKTPQTIYHHIEKLKEAGLVEV 65 (192)
T ss_dssp HHHHHHHHHHT-TCCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEE
Confidence 45667888877 6779999999987 479999998765 5665543
No 69
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=48.17 E-value=30 Score=21.99 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=19.9
Q ss_pred ccCHHHHHHHHHhccCccccHHHHHHHHHh
Q psy16970 23 FATALEVRQELQDVRKVHLNEGTVRIRLNE 52 (257)
Q Consensus 23 ~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~ 52 (257)
..|..||+..| .+|.+||++.+++
T Consensus 31 g~s~~eIA~~l------gis~~TV~~~l~~ 54 (55)
T 2x48_A 31 GYTVQQIANAL------GVSERKVRRYLES 54 (55)
T ss_dssp TCCHHHHHHHH------TSCHHHHHHHHTC
T ss_pred CCCHHHHHHHH------CcCHHHHHHHHHh
Confidence 36899999887 4899999999864
No 70
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=48.02 E-value=43 Score=23.93 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=29.9
Q ss_pred CchhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhcC
Q psy16970 7 ASMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNENN 54 (257)
Q Consensus 7 ~~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~ 54 (257)
|......+++.+..+...|..+|+.++ .||.+||++.+.+..
T Consensus 7 s~e~k~~~v~~~~~~~g~s~~~ia~~~------gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 7 SEEFKRDAVALYENSDGASLQQIANDL------GINRVTLKNWIIKYG 48 (97)
T ss_dssp CHHHHHHHHHHHTTGGGSCHHHHHHHH------TSCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHH------CcCHHHHHHHHHHHh
Confidence 445566677766543357889998887 368999999887644
No 71
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=47.69 E-value=40 Score=26.29 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=27.9
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
...+..|+..+.. ..|..+|+..| .+|.+||++.+++.
T Consensus 28 ~e~r~~ii~l~~~--G~s~~~IA~~l------gis~~TV~rwl~r~ 65 (159)
T 2k27_A 28 EVVRQRIVDLAHQ--GVRPCDISRQL------RVSHGCVSKILGRY 65 (159)
T ss_dssp HHHHHHHHHHHHH--TCCHHHHHHHH------TCCSHHHHHHHCCS
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHH------CcCHHHHHHHHHHH
Confidence 3445566666643 37889998887 37999999999874
No 72
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=44.38 E-value=32 Score=25.80 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=23.7
Q ss_pred HHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhcCC
Q psy16970 13 FIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNENNL 55 (257)
Q Consensus 13 ~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l 55 (257)
.+++.+.+.+.-.-.+.++.| .+|+.|++++|++.|+
T Consensus 61 ~~I~~aL~~~~gn~~~AA~~L------GIsR~TL~rkLkk~gi 97 (98)
T 1eto_A 61 PLLDMVMQYTLGNQTRAALMM------GINRGTLRKKLKKYGM 97 (98)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH------TSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHh------CCCHHHHHHHHHHhCC
Confidence 334444444444555555555 4899999999998775
No 73
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=44.06 E-value=35 Score=25.58 Aligned_cols=42 Identities=14% Similarity=0.084 Sum_probs=32.6
Q ss_pred CCchhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 6 GASMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 6 ~~~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
=|...+..++..+..++..+..+++.++ .|+..||++.++..
T Consensus 8 ~t~e~K~~iv~~~~~~g~~~~~~~A~~~------gvs~stl~~~~~~~ 49 (131)
T 1hlv_A 8 LTFREKSRIIQEVEENPDLRKGEIARRF------NIPPSTLSTILKNK 49 (131)
T ss_dssp CCHHHHHHHHHHHHHCTTSCHHHHHHHH------TCCHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHHCCCCcHHHHHHHh------CCCHHHHHHHHhch
Confidence 3556667788887777878877998887 47899999998864
No 74
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=44.03 E-value=11 Score=29.69 Aligned_cols=48 Identities=6% Similarity=-0.022 Sum_probs=38.8
Q ss_pred CCchhhHHHHHHH-hhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 6 GASMNDRFIVSQV-LRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 6 ~~~~~~r~i~r~v-~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
=|..++..|+... ..+|..|-.+|+.......|..++.+||++.|+..
T Consensus 12 lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 12 ITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 3567778888888 68999999999997666665679999999998763
No 75
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=43.41 E-value=28 Score=25.29 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=30.7
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
..+..|+..+ .++..|..||.+.+ .+|.+||++.|+ +.|+-.+
T Consensus 21 ~~r~~IL~~L-~~~~~~~~ela~~l------~is~~tv~~~l~~L~~~gli~~ 66 (114)
T 2oqg_A 21 ETRWEILTEL-GRADQSASSLATRL------PVSRQAIAKHLNALQACGLVES 66 (114)
T ss_dssp HHHHHHHHHH-HHSCBCHHHHHHHS------SSCHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHH-HcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeeE
Confidence 3455677776 44558999999887 479999998765 4776644
No 76
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=43.30 E-value=11 Score=27.44 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=12.5
Q ss_pred cccHHHHHHHHHhcCC
Q psy16970 40 HLNEGTVRIRLNENNL 55 (257)
Q Consensus 40 ~~s~~Tvrr~L~~~~l 55 (257)
.||+.|++|+|++.|+
T Consensus 75 GIsr~tL~rklkk~~i 90 (91)
T 1ntc_A 75 GWGAATLTAKLKELGM 90 (91)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHhCc
Confidence 4788899988887654
No 77
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=41.27 E-value=39 Score=24.64 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=30.6
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
..+..|+..+. ++..|..||.+.+ .+|.+||++.|+ +.|+-.+
T Consensus 26 ~~r~~IL~~L~-~~~~~~~ela~~l------~is~stvs~~L~~L~~~Glv~~ 71 (106)
T 1r1u_A 26 YNRIRIMELLS-VSEASVGHISHQL------NLSQSNVSHQLKLLKSVHLVKA 71 (106)
T ss_dssp HHHHHHHHHHH-HCCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHH-hCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEE
Confidence 34556777776 4557999999987 478899997665 5676543
No 78
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=40.30 E-value=37 Score=27.72 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=32.4
Q ss_pred hhhHHHHHHHhhCcc--cCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcc
Q psy16970 9 MNDRFIVSQVLRNCF--ATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTA 57 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~--~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~ 57 (257)
.++..|+..+...|. .|+.||...+ ..+|..||+|.|. +.|+-.
T Consensus 29 ~tR~~IL~~Ll~~p~~~~ta~eL~~~l-----~~lS~aTVyrhL~~L~eaGLV~ 77 (151)
T 3u1d_A 29 ETRLDVLHQILAQPDGVLSVEELLYRN-----PDETEANLRYHVDELVDRGIVE 77 (151)
T ss_dssp HHHHHHHHHHHHSTTSCBCHHHHHHHC-----TTSCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHcCCCCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHCCCeE
Confidence 456778888877653 7999987653 2489999998876 567654
No 79
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=39.46 E-value=55 Score=29.53 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=39.0
Q ss_pred cccccccccEEEE-eCceEEecCeeccCCCCceEEEecCCCCCCCCCceecCCCCCCCcCccccCceEEEEcCCCceeec
Q psy16970 139 GVHGVSSDPIVIV-DAQTLLVPNFSYDGEAPDAKFWVGTGPHPSPQGIRVPDENGKEEPLRRYNRKTIVLTLPGELTVFE 217 (257)
Q Consensus 139 ~~H~v~sg~V~iv-D~~Tl~i~~FsydG~gPd~yfw~g~~~~p~~~G~~vpde~g~~~~L~~Y~~~~i~l~LP~~~ti~d 217 (257)
+-.|..+|.|+++ |...=.+.+|.|. -+|-+..|.. |.......-+|+|++|++|-|..+.|
T Consensus 35 gg~gg~gg~v~~~~~~~~~~l~~~~~~-----~~~~a~~g~~------------g~~~~~~g~~g~d~~~~vp~gt~v~~ 97 (342)
T 1lnz_A 35 GGDGGKGGDVVFEVDEGLRTLMDFRYK-----KHFKAIRGEH------------GMSKNQHGRNADDMVIKVPPGTVVTD 97 (342)
T ss_dssp CCCCCCCCCEEEEECTTCCCSCGGGTC-----CEEECCCCCC------------CCSTTCCCCCCCCEEEEECTTEEEEE
T ss_pred CCCCCCCCeEEEEeCCCcChHHHhCcc-----ceEEcCCCCC------------CCCCCCcCCCCCCEEEEcCCccEEEe
Confidence 3566677778877 5544456677664 3444444322 11111233468999999999999988
Q ss_pred c
Q psy16970 218 I 218 (257)
Q Consensus 218 i 218 (257)
.
T Consensus 98 ~ 98 (342)
T 1lnz_A 98 D 98 (342)
T ss_dssp T
T ss_pred C
Confidence 5
No 80
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=38.72 E-value=51 Score=24.53 Aligned_cols=47 Identities=11% Similarity=0.200 Sum_probs=34.9
Q ss_pred CCchhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccc
Q psy16970 6 GASMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKR 59 (257)
Q Consensus 6 ~~~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~ 59 (257)
|-....-.|+..+..++ .|..||...+. ++.+||.+.|. +.|+-.+.
T Consensus 35 ~lt~~~~~iL~~l~~~~-~t~~eLa~~l~------~s~~tvs~~l~~L~~~Glv~r~ 84 (146)
T 3tgn_A 35 ALTNTQEHILMLLSEES-LTNSELARRLN------VSQAAVTKAIKSLVKEGMLETS 84 (146)
T ss_dssp CCCHHHHHHHHHHTTCC-CCHHHHHHHHT------CCHHHHHHHHHHHHHTTSEEC-
T ss_pred CCCHHHHHHHHHHHhCC-CCHHHHHHHHC------CCHHHHHHHHHHHHHCCCeEec
Confidence 34556677888888888 99999999984 68888886654 57766543
No 81
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=38.65 E-value=57 Score=21.58 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=25.7
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
..+.++..+. ...|..||++.| .+|..||++.+++.
T Consensus 15 ~e~~il~~~~--~g~s~~eIA~~l------~is~~tV~~~~~~~ 50 (74)
T 1fse_A 15 REREVFELLV--QDKTTKEIASEL------FISEKTVRNHISNA 50 (74)
T ss_dssp HHHHHHHHHT--TTCCHHHHHHHH------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCHHHHHHHH------CCCHHHHHHHHHHH
Confidence 3445555553 335999999988 47999999988764
No 82
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=38.28 E-value=39 Score=29.24 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=41.5
Q ss_pred CCchhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccccc-ccCCCcchHHHH
Q psy16970 6 GASMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKRL-HRAPELSIRNQR 72 (257)
Q Consensus 6 ~~~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~~-~~~p~l~~~~~~ 72 (257)
|-...+..|+..+.+++..|..||.+.|. ++.+||.|.|+ +.|+-.+.. .+.-.||++-+.
T Consensus 149 ~L~~~~~~IL~~L~~~~~~s~~eLA~~lg------lsksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~ 213 (244)
T 2wte_A 149 DYSREEMKLLNVLYETKGTGITELAKMLD------KSEKTLINKIAELKKFGILTQKGKDRKVELNELGLN 213 (244)
T ss_dssp CCCHHHHHHHHHHHHHTCBCHHHHHHHHT------CCHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHC------cCHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHH
Confidence 33455667778877778899999999884 78999998766 467665532 233455555443
No 83
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=38.01 E-value=53 Score=23.01 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=25.3
Q ss_pred hHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 11 DRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 11 ~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
.+.++.... ...|..||++.| .+|..||+.++++.
T Consensus 26 e~~vl~l~~--~g~s~~eIA~~l------~is~~tV~~~l~r~ 60 (82)
T 1je8_A 26 ERDILKLIA--QGLPNKMIARRL------DITESTVKVHVKHM 60 (82)
T ss_dssp HHHHHHHHT--TTCCHHHHHHHH------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCCHHHHHHHH------CcCHHHHHHHHHHH
Confidence 344455543 347999999998 47999999988753
No 84
>3hd4_A Nucleoprotein; beta platform beta hairpin, golgi apparatus, nucleus, RNA-binding, transcription, transcriptio regulation, virion; 1.75A {Murine hepatitis virus}
Probab=36.45 E-value=21 Score=29.03 Aligned_cols=42 Identities=26% Similarity=0.439 Sum_probs=24.0
Q ss_pred eeccCCCC----------ceEEEecCCCC----CCCCCceecCCCCCCCcCccccCceEEEEcCCCc
Q psy16970 161 FSYDGEAP----------DAKFWVGTGPH----PSPQGIRVPDENGKEEPLRRYNRKTIVLTLPGEL 213 (257)
Q Consensus 161 FsydG~gP----------d~yfw~g~~~~----p~~~G~~vpde~g~~~~L~~Y~~~~i~l~LP~~~ 213 (257)
|.|.|.|| |--|||+.... |+..|.+-|+ +++-|.|++|+|-
T Consensus 70 FYY~GTGP~adlkyg~~~~gV~WVa~~GA~t~~~~~~GtRnP~-----------n~~aipl~F~~G~ 125 (139)
T 3hd4_A 70 FYYLGTGPHAGASYGDSIEGVFWVANSQADTNTRSDIVERDPS-----------SHEAIPTRFAPGT 125 (139)
T ss_dssp EEETTCSTTTTCCTTCCCTTEEEEECTTSCTTSCCSSCCCCTT-----------TCCCBCCCCCTTC
T ss_pred EEEecCCccccCcccccCCCeEEEecCCcccCcCCcccccCCC-----------CccccceEcCCCC
Confidence 77888876 23566665433 2334444333 3566677777764
No 85
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=35.65 E-value=62 Score=21.11 Aligned_cols=36 Identities=14% Similarity=-0.008 Sum_probs=25.1
Q ss_pred hHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 11 DRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 11 ~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
.+.++...- -...|..||+..| .+|..||++++++.
T Consensus 20 ~r~il~l~~-~~g~s~~eIA~~l------gis~~tv~~~~~ra 55 (70)
T 2o8x_A 20 QREALLLTQ-LLGLSYADAAAVC------GCPVGTIRSRVARA 55 (70)
T ss_dssp HHHHHHHHH-TSCCCHHHHHHHH------TSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCCHHHHHHHH------CcCHHHHHHHHHHH
Confidence 344444432 2347899999987 47999999998864
No 86
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=35.46 E-value=56 Score=24.65 Aligned_cols=51 Identities=12% Similarity=0.166 Sum_probs=34.8
Q ss_pred HHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccccccCCCcchHH
Q psy16970 14 IVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKRLHRAPELSIRN 70 (257)
Q Consensus 14 i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~~~~~p~l~~~~ 70 (257)
|......++..|..+|++.| .+|.+||++.|+ +.|+-.+...+.-.||++-
T Consensus 13 i~~l~~~~~~~~~~ela~~l------~vs~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g 66 (142)
T 1on2_A 13 IYMLIEEKGYARVSDIAEAL------AVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKG 66 (142)
T ss_dssp HHHHHHHHSSCCHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEETTTEEEECHHH
T ss_pred HHHHHhhcCCCCHHHHHHHh------CCCHHHHHHHHHHHHHCCCEEEeeCceEEEchhH
Confidence 44444456779999999987 478888887655 5777665544455666643
No 87
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=34.56 E-value=42 Score=30.33 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=32.2
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCc
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLT 56 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~ 56 (257)
+.+.|++.+.++...|..||.+.+ .+|..||.+.++ +.|+-
T Consensus 17 n~~~il~~l~~~~~~sr~~la~~~------~ls~~tv~~~v~~L~~~g~i 60 (406)
T 1z6r_A 17 NAGAVYRLIDQLGPVSRIDLSRLA------QLAPASITKIVHEMLEAHLV 60 (406)
T ss_dssp HHHHHHHHHHSSCSCCHHHHHHHT------TCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHH------CCCHHHHHHHHHHHHHCCcE
Confidence 456789999999999999999987 578888887655 45553
No 88
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=34.01 E-value=26 Score=26.21 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=31.5
Q ss_pred HHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHH---HhcCCcccc
Q psy16970 12 RFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRL---NENNLTAKR 59 (257)
Q Consensus 12 r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L---~~~~l~~~~ 59 (257)
..|+..+-++...|+.||.+.|... ..++..||.+.| .+.|+-.+.
T Consensus 38 ~~VL~~L~~~~~~t~~eL~~~l~~~--~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 38 LIVMRVIWSLGEARVDEIYAQIPQE--LEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp SHHHHHHHHHSCEEHHHHHHTCCGG--GCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHhCCCCCHHHHHHHHhcc--cCCCHhhHHHHHHHHHHCCCEEEE
Confidence 3556666556679999999999753 356777887655 456766543
No 89
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=33.42 E-value=40 Score=25.32 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=31.9
Q ss_pred hCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccccccCCCcchHHHH
Q psy16970 20 RNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKRLHRAPELSIRNQR 72 (257)
Q Consensus 20 ~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~~~~~p~l~~~~~~ 72 (257)
.+...|..+|++.|. ++..||++.|+ +.|+-.+.. +.-.||.+-+.
T Consensus 28 ~~~~~s~~ela~~l~------is~~tv~~~l~~Le~~Gli~r~~-~~~~Lt~~g~~ 76 (139)
T 2x4h_A 28 SGEGAKINRIAKDLK------IAPSSVFEEVSHLEEKGLVKKKE-DGVWITNNGTR 76 (139)
T ss_dssp TTSCBCHHHHHHHHT------CCHHHHHHHHHHHHHTTSEEEET-TEEEECHHHHH
T ss_pred cCCCcCHHHHHHHhC------CChHHHHHHHHHHHHCCCEEecC-CeEEEChhHHH
Confidence 467789999999874 78888887655 577765544 44566665443
No 90
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=33.11 E-value=59 Score=23.81 Aligned_cols=49 Identities=12% Similarity=0.214 Sum_probs=34.5
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKR 59 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~ 59 (257)
.....|+..+..++..|+.+|...+... ..++.+||.+.|+ +.|+-.+.
T Consensus 10 ~~~~~vL~~l~~~~~~t~~ela~~l~~~--~~~s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 10 SAEWEVMNIIWMKKYASANNIIEEIQMQ--KDWSPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhcc--CCCcHhhHHHHHHHHHHCCCeEEE
Confidence 3445566666667779999999999752 2478888887654 57776554
No 91
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=32.29 E-value=39 Score=28.24 Aligned_cols=53 Identities=21% Similarity=0.045 Sum_probs=37.2
Q ss_pred HhhCcccCHHHHHHHHHhccCccccHHHHHHH---HHhcCCcccccccCCCcchHHHHhhhh
Q psy16970 18 VLRNCFATALEVRQELQDVRKVHLNEGTVRIR---LNENNLTAKRLHRAPELSIRNQRARSR 76 (257)
Q Consensus 18 v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~---L~~~~l~~~~~~~~p~l~~~~~~~r~~ 76 (257)
...+...|..+|++.|. +|..||.+. |.+.||-.+...+.-.||++=++.-.+
T Consensus 15 ~~~~~~~~~~~lA~~l~------vs~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~ 70 (214)
T 3hrs_A 15 GTRHNKITNKEIAQLMQ------VSPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSD 70 (214)
T ss_dssp TSSCSCCCHHHHHHHHT------CCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHC------CChhHHHHHHHHHHHCCCEEEecCCCeEECHHHHHHHHH
Confidence 34567799999999984 677777755 556888777666667788866554333
No 92
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=32.17 E-value=39 Score=24.63 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=30.2
Q ss_pred hhHHHHHHHh-hCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccc
Q psy16970 10 NDRFIVSQVL-RNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKR 59 (257)
Q Consensus 10 ~~r~i~r~v~-~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~ 59 (257)
.+..|+.... .+...|..+|.+.+ .+|..||++.|+ +.|+-.++
T Consensus 19 ~~l~Il~~l~~~g~~~s~~eLa~~l------gvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 19 DVIDVLRILLDKGTEMTDEEIANQL------NIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp TTHHHHHHHHHHCSCBCHHHHHHTT------TSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 4455666654 45468999988876 589999997765 46665433
No 93
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=32.05 E-value=57 Score=23.98 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=29.5
Q ss_pred hHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 11 DRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 11 ~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
+..|+..+.. +..|..||.+.+ .+|.+||++.|+ +.|+-.+
T Consensus 27 r~~IL~~L~~-~~~s~~eLa~~l------gis~stvs~~L~~L~~~GlV~~ 70 (108)
T 2kko_A 27 RLQILDLLAQ-GERAVEAIATAT------GMNLTTASANLQALKSGGLVEA 70 (108)
T ss_dssp THHHHHHHTT-CCEEHHHHHHHH------TCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHc-CCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEE
Confidence 4567776654 567999999887 378899987655 5776543
No 94
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=32.01 E-value=66 Score=24.66 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=35.8
Q ss_pred HHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccccccCCCcchHHHH
Q psy16970 14 IVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKRLHRAPELSIRNQR 72 (257)
Q Consensus 14 i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~~~~~p~l~~~~~~ 72 (257)
|...+..+...|..++.+.| .+|..||++.|+ +.|+-.++..+.-.||..-+.
T Consensus 45 i~~~l~~~~~~~~~~la~~l------~vs~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~ 100 (155)
T 2h09_A 45 ISDLIREVGEARQVDMAARL------GVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEK 100 (155)
T ss_dssp HHHHHHHHSCCCHHHHHHHH------TSCHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHh------CcCHHHHHHHHHHHHHCCCEEEecCCceEEChhHHH
Confidence 33455555668888888887 478889987765 577765555555667765543
No 95
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=31.09 E-value=83 Score=23.02 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=29.4
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHh---cCCcc
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNE---NNLTA 57 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~---~~l~~ 57 (257)
.+..|+..+.. +..|..++.+.| .+|..||.+.|+. .|+--
T Consensus 33 ~~~~il~~L~~-~~~s~~ela~~l------~is~stvsr~l~~Le~~Glv~ 76 (119)
T 2lkp_A 33 SRLMILTQLRN-GPLPVTDLAEAI------GMEQSAVSHQLRVLRNLGLVV 76 (119)
T ss_dssp HHHHHHHHHHH-CCCCHHHHHHHH------SSCHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEE
Confidence 34456666665 568999999987 4789999988765 46553
No 96
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=30.79 E-value=50 Score=30.24 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=31.9
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCc
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLT 56 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~ 56 (257)
+.+.|++.+.++...|..||.+.+ .+|..||.+.+. +.|+-
T Consensus 40 n~~~il~~l~~~~~~sr~ela~~~------gls~~tv~~~v~~L~~~gli 83 (429)
T 1z05_A 40 NAGRVYKLIDQKGPISRIDLSKES------ELAPASITKITRELIDAHLI 83 (429)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHH------CCCHHHHHHHHHHHHHCCCE
Confidence 556789999888999999999987 478888886654 56654
No 97
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=30.75 E-value=44 Score=25.22 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=30.4
Q ss_pred CccccCCchhhHHHHHHHhh--CcccCHHHHHHHHHhccCccccHHHHHHH---HHhcCCc
Q psy16970 1 MRIASGASMNDRFIVSQVLR--NCFATALEVRQELQDVRKVHLNEGTVRIR---LNENNLT 56 (257)
Q Consensus 1 ~~~~~~~~~~~r~i~r~v~~--~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~---L~~~~l~ 56 (257)
|++.+.+..--+.+...... +...|+.||.+++ .+|..++++. |.+.|+-
T Consensus 2 M~ls~~~~~al~iL~~la~~~~~~~~s~~ela~~~------~i~~~~v~~il~~L~~~Glv 56 (129)
T 2y75_A 2 LKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTN------NLSEHYLEQLVSPLRNAGLV 56 (129)
T ss_dssp BCCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHT------TSCHHHHHHHHHHHHHTTSE
T ss_pred CcCchHHHHHHHHHHHHHhCCCCCcCCHHHHHHHH------CcCHHHHHHHHHHHHHCCce
Confidence 34433333334444444333 3568999999886 5788888875 5567764
No 98
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=30.46 E-value=40 Score=24.57 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=27.9
Q ss_pred hhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccccccCC
Q psy16970 19 LRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKRLHRAP 64 (257)
Q Consensus 19 ~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~~~~~p 64 (257)
..+-.+||.+|+.+|. ++++.|.|.|. +.|+-.+.....|
T Consensus 25 ~~~~~~Ta~~IAkkLg------~sK~~vNr~LY~L~kkG~V~~~~~~PP 67 (75)
T 1sfu_A 25 NTNDYTTAISLSNRLK------INKKKINQQLYKLQKEDTVKMVPSNPP 67 (75)
T ss_dssp CTTCEECHHHHHHHTT------CCHHHHHHHHHHHHHTTSEEEECCSSC
T ss_pred CCCcchHHHHHHHHHC------CCHHHHHHHHHHHHHCCCEecCCCCCC
Confidence 3455699999999984 78899998875 4555544444333
No 99
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=30.38 E-value=48 Score=24.84 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=30.4
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHh---cCCccc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNE---NNLTAK 58 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~---~~l~~~ 58 (257)
..+..|+..+..++ .|..||.+.| .+|.+||++.|+. .|+-.+
T Consensus 21 ~~r~~IL~~L~~~~-~~~~eLa~~l------gis~stvs~~L~~L~~~GlV~~ 66 (118)
T 2jsc_A 21 PTRCRILVALLDGV-CYPGQLAAHL------GLTRSNVSNHLSCLRGCGLVVA 66 (118)
T ss_dssp HHHHHHHHHHHTTC-CSTTTHHHHH------SSCHHHHHHHHHHHTTTTSEEE
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHH------CcCHHHHHHHHHHHHHCCceEE
Confidence 34566777766544 7888888877 4799999987664 676543
No 100
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=30.36 E-value=99 Score=21.77 Aligned_cols=61 Identities=7% Similarity=0.109 Sum_probs=38.0
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccccc---ccCCCcchHHHH
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKRL---HRAPELSIRNQR 72 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~~---~~~p~l~~~~~~ 72 (257)
..-.|+..+.+++..|..||..++... ..++.+||.+.|+ +.|+-.+.. .+.-.||++=++
T Consensus 9 ~q~~iL~~l~~~~~~~~~el~~~la~~--l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~ 75 (99)
T 1tbx_A 9 PEAIVLAYLYDNEGIATYDLYKKVNAE--FPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKL 75 (99)
T ss_dssp HHHHHHHHHTTCTTCBHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHH--cCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHH
Confidence 344566666677789999996666443 3688999987755 567665532 223345554433
No 101
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=30.23 E-value=39 Score=22.59 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=21.9
Q ss_pred cccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 22 CFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 22 ~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
...|..||++.| .+|.+||+++++++
T Consensus 24 ~g~s~~eIA~~l------gis~~tV~~~~~ra 49 (68)
T 2p7v_B 24 TDYTLEEVGKQF------DVTRERIRQIEAKA 49 (68)
T ss_dssp SCCCHHHHHHHH------TCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH------CcCHHHHHHHHHHH
Confidence 458999999987 48999999998764
No 102
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=29.68 E-value=70 Score=23.03 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=25.1
Q ss_pred hHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 11 DRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 11 ~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
.+.++..+. ...|..||++.| .+|..||+.++++.
T Consensus 32 e~~vl~l~~--~g~s~~eIA~~l------~is~~tV~~~l~r~ 66 (95)
T 3c57_A 32 ERTLLGLLS--EGLTNKQIADRM------FLAEKTVKNYVSRL 66 (95)
T ss_dssp HHHHHHHHH--TTCCHHHHHHHH------TCCHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCCHHHHHHHH------CcCHHHHHHHHHHH
Confidence 344444443 347889999998 47999999888764
No 103
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=29.22 E-value=1e+02 Score=22.88 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=35.0
Q ss_pred CCchhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHH---HHhcCCcccc
Q psy16970 6 GASMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIR---LNENNLTAKR 59 (257)
Q Consensus 6 ~~~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~---L~~~~l~~~~ 59 (257)
|=....-.++..+..++..|..+|.+.+ .++.+||.+. |.+.|+-.+.
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l------~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDIL------GLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEee
Confidence 4445666778888888899999999987 4688888876 4557766543
No 104
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=29.16 E-value=86 Score=23.89 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=34.0
Q ss_pred chhhHHHHHHHhh-CcccCHHHHHHHHHhccCccccHHHHHHH---HHhcCCcccc
Q psy16970 8 SMNDRFIVSQVLR-NCFATALEVRQELQDVRKVHLNEGTVRIR---LNENNLTAKR 59 (257)
Q Consensus 8 ~~~~r~i~r~v~~-~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~---L~~~~l~~~~ 59 (257)
....-.|+..+-. +...|+.||.+.|... ..++.+||.+. |.+.|+-.+.
T Consensus 8 t~~e~~vL~~L~~~~~~~t~~el~~~l~~~--~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 8 GDLERAVMDHLWSRTEPQTVRQVHEALSAR--RDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp CHHHHHHHHHHHTCSSCEEHHHHHHHHTTT--CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHhcc--CCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3445566666666 5789999999999753 24677777765 5567776543
No 105
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=29.04 E-value=86 Score=22.98 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=32.3
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKR 59 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~ 59 (257)
....-.|+..+..++..|..+|...+ .++.+||.+.|+ +.|+-.+.
T Consensus 30 ~~~~~~iL~~l~~~~~~~~~ela~~l------~is~~~vs~~l~~L~~~gli~~~ 78 (142)
T 3bdd_A 30 SLTRYSILQTLLKDAPLHQLALQERL------QIDRAAVTRHLKLLEESGYIIRK 78 (142)
T ss_dssp CHHHHHHHHHHHHHCSBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEec
Confidence 34455667777666779999999987 468888886655 56766543
No 106
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=28.73 E-value=96 Score=22.32 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=25.0
Q ss_pred HHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 12 RFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 12 r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
+.|+..+. ...|..||+..| .+|..||+..+.+.
T Consensus 35 ~~Vl~l~~--~G~s~~eIA~~L------~iS~~TV~~~~~~i 68 (90)
T 3ulq_B 35 CLILQEVE--KGFTNQEIADAL------HLSKRSIEYSLTSI 68 (90)
T ss_dssp HHHHHHHH--TTCCHHHHHHHH------TCCHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHHHHH------CcCHHHHHHHHHHH
Confidence 44555555 347899999998 47999999887653
No 107
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=28.51 E-value=93 Score=21.94 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=26.4
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
......+++.+.. ..|..+|+.++ .||..||++.+++.
T Consensus 25 ~e~k~~~v~~~~~--g~s~~~iA~~~------gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 25 PRDKIHAIQRIHD--GESKASVARDI------GVPESTLRGWCKNE 62 (87)
T ss_dssp HHHHHHHHHHHHH--TCCHHHHHHHH------TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCCHHHHHHHH------CcCHHHHHHHHHHH
Confidence 3344566666633 37888888876 47999999988653
No 108
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=28.46 E-value=1e+02 Score=22.41 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=32.4
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
....-.|+..+..++..|..||.+.+ .++.+||.+.++ +.|+-.+
T Consensus 28 ~~~~~~iL~~l~~~~~~~~~ela~~l------~~s~~tvs~~l~~L~~~glv~~ 75 (138)
T 3bpv_A 28 TDAQVACLLRIHREPGIKQDELATFF------HVDKGTIARTLRRLEESGFIER 75 (138)
T ss_dssp CHHHHHHHHHHHHSTTCBHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEe
Confidence 34455677777777889999999987 467888886554 5776654
No 109
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=28.11 E-value=42 Score=23.88 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=21.3
Q ss_pred cccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 22 CFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 22 ~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
...|..||++.| .+|.+||++++++.
T Consensus 52 ~g~s~~eIA~~l------gis~~tV~~~l~ra 77 (92)
T 3hug_A 52 RGWSTAQIATDL------GIAEGTVKSRLHYA 77 (92)
T ss_dssp SCCCHHHHHHHH------TSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH------CcCHHHHHHHHHHH
Confidence 347899999988 47999999998764
No 110
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=26.89 E-value=55 Score=24.68 Aligned_cols=43 Identities=26% Similarity=0.348 Sum_probs=30.9
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHH---HHhcCCcc
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIR---LNENNLTA 57 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~---L~~~~l~~ 57 (257)
..=-|+..+.++|+.|+.+|+. |. ..+.++||.|- |.+.||-.
T Consensus 17 ~QfsiL~~L~~~~~~t~~~Lae-~~----l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 17 KTATILITIAKKDFITAAEVRE-VH----PDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp HHHHHHHHHHHSTTBCHHHHHH-TC----TTSCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHH-HH----hcccHHHHHHHHHHHHHCCCee
Confidence 3345667778889999999998 32 25788888874 55777664
No 111
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=26.84 E-value=56 Score=22.10 Aligned_cols=26 Identities=19% Similarity=0.033 Sum_probs=21.6
Q ss_pred cccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 22 CFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 22 ~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
...|..||++.| .+|.+||+++++++
T Consensus 29 ~~~s~~eIA~~l------~is~~tV~~~~~ra 54 (73)
T 1ku3_A 29 REHTLEEVGAYF------GVTRERIRQIENKA 54 (73)
T ss_dssp SCCCHHHHHHHH------TCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH------CCCHHHHHHHHHHH
Confidence 458999999987 48999999988764
No 112
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=26.57 E-value=52 Score=24.51 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=31.3
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
...+..|+..+..+| .|+.||.+.| .+|..||.+.|+ +.|+-.+
T Consensus 17 ~~~R~~Il~~L~~~~-~~~~eLa~~l------~is~~tvs~hL~~L~~~GlV~~ 63 (118)
T 3f6o_A 17 DPTRRAVLGRLSRGP-ATVSELAKPF------DMALPSFMKHIHFLEDSGWIRT 63 (118)
T ss_dssp SHHHHHHHHHHHTCC-EEHHHHHTTC------CSCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHhCC-CCHHHHHHHh------CcCHHHHHHHHHHHHHCCCeEE
Confidence 345667777777544 6888888765 588999997655 5777644
No 113
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=25.52 E-value=87 Score=28.05 Aligned_cols=61 Identities=7% Similarity=0.129 Sum_probs=42.0
Q ss_pred hhHHHHHHHhh--CcccCHHHHHHHHHhccCccccHHHHHHHH---HhcCC-------cccccccCC-CcchHHHHhhhh
Q psy16970 10 NDRFIVSQVLR--NCFATALEVRQELQDVRKVHLNEGTVRIRL---NENNL-------TAKRLHRAP-ELSIRNQRARSR 76 (257)
Q Consensus 10 ~~r~i~r~v~~--~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L---~~~~l-------~~~~~~~~p-~l~~~~~~~r~~ 76 (257)
.++.|++.... +.+.|..+|.++| .+|+.+|++.+ ++.|+ +++++...| .|++...+..+.
T Consensus 4 ~~~~iL~~L~~~~g~~~Sg~eLa~~l------gvSr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~~~~~l~~~~i~~~l~ 77 (323)
T 3rkx_A 4 YSQDVLQLLYKNKPNYISGQSIAESL------NISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQLPDIWYQGIIDQYTK 77 (323)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHH------TSCHHHHHHHHHHHHHTTCEEEEETTTEEEEEECCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHH------CCCHHHHHHHHHHHHhcCCeEEEeCCCeEEEecCcccCCHHHHHhhcc
Confidence 45667777743 5689999999998 58999999764 55676 244555544 467766666554
No 114
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=25.35 E-value=76 Score=28.74 Aligned_cols=36 Identities=8% Similarity=0.060 Sum_probs=27.9
Q ss_pred HHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCc
Q psy16970 17 QVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLT 56 (257)
Q Consensus 17 ~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~ 56 (257)
.+..+...++.+|.+.+. ..+|..||||-|. +.|+-
T Consensus 30 yl~~~~pV~s~~La~~~~----l~VS~aTIRrDL~~LE~~GlL 68 (338)
T 1stz_A 30 YIENKKPVSSQRVLEVSN----IEFSSATIRNDMKKLEYLGYI 68 (338)
T ss_dssp HHHHCSCBCHHHHHHHSC----CCSCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCccHHHHHHHhC----CCCCHHHHHHHHHHHHHCCCE
Confidence 566677899999988774 4789999998766 56654
No 115
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=25.04 E-value=1.2e+02 Score=20.34 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=24.4
Q ss_pred HHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 12 RFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 12 r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
+.++... -...|..||++.| .+|..||++.+++.
T Consensus 22 ~~vl~l~--~~g~s~~eIA~~l------~is~~tV~~~~~r~ 55 (79)
T 1x3u_A 22 RQVLSAV--VAGLPNKSIAYDL------DISPRTVEVHRANV 55 (79)
T ss_dssp HHHHHHH--TTTCCHHHHHHHT------TSCHHHHHHHHHHH
T ss_pred HHHHHHH--HcCCCHHHHHHHH------CcCHHHHHHHHHHH
Confidence 4444444 3457889999987 47999999888754
No 116
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=25.01 E-value=91 Score=29.02 Aligned_cols=62 Identities=13% Similarity=0.261 Sum_probs=36.5
Q ss_pred cccccccccEEEE-eCceEEecCeeccCCCCceEEEecCCCCCCCCCceecCCCCCCCcCccccCceEEEEcCCCceeec
Q psy16970 139 GVHGVSSDPIVIV-DAQTLLVPNFSYDGEAPDAKFWVGTGPHPSPQGIRVPDENGKEEPLRRYNRKTIVLTLPGELTVFE 217 (257)
Q Consensus 139 ~~H~v~sg~V~iv-D~~Tl~i~~FsydG~gPd~yfw~g~~~~p~~~G~~vpde~g~~~~L~~Y~~~~i~l~LP~~~ti~d 217 (257)
+-.|..+|.|+++ |...=.+.+| |. -+|-+..|. .|.......-+|+|++|++|-|..+.|
T Consensus 35 gg~gg~gg~v~~~~~~~~~~l~~~-~~-----~~~~a~~g~------------~g~~~~~~g~~g~d~~~~vp~gt~v~~ 96 (416)
T 1udx_A 35 GGDGGRGGSVYLRARGSVDSLSRL-SK-----RTYKAEDGE------------HGRGSQQHGRGGEDLVIEVPRGTRVFD 96 (416)
T ss_dssp CCCCCCCCCEEEEECTTCCSSTTS-CS-----SCEECCCCC------------CCBTTTBCCCCCCCEEEEECSSEEEEE
T ss_pred CCCCCCCCeEEEEeCCCcCchhhh-hh-----ceEEcCCCC------------CCCCCCCcCCCCCCEEEecCCccEEEe
Confidence 3566667778877 4333355666 53 233333321 111112234468999999999998887
Q ss_pred c
Q psy16970 218 I 218 (257)
Q Consensus 218 i 218 (257)
.
T Consensus 97 ~ 97 (416)
T 1udx_A 97 A 97 (416)
T ss_dssp T
T ss_pred c
Confidence 5
No 117
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=24.72 E-value=54 Score=26.03 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=31.8
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKR 59 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~ 59 (257)
..+..|+..+... ..|+.||...| .++..||.+.|. +.||-.++
T Consensus 58 p~R~~IL~~L~~~-~~t~~eLa~~l------gls~stvs~hL~~L~~aGlV~~~ 104 (151)
T 3f6v_A 58 PTRRRLVQLLTSG-EQTVNNLAAHF------PASRSAISQHLRVLTEAGLVTPR 104 (151)
T ss_dssp HHHHHHHHHGGGC-CEEHHHHHTTS------SSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 4567788887754 48888888776 578999997655 67876543
No 118
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=24.68 E-value=1.1e+02 Score=22.51 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=32.3
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHH---HhcCCcccc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRL---NENNLTAKR 59 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L---~~~~l~~~~ 59 (257)
....-.++..+..++..|..+|...+. ++.+||.+.+ .+.|+-.+.
T Consensus 28 t~~~~~iL~~l~~~~~~t~~~la~~l~------~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 28 TRGQYLYLVRVCENPGIIQEKIAELIK------VDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp TTTHHHHHHHHHHSTTEEHHHHHHHHT------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHCcCcCHHHHHHHHC------CCHhHHHHHHHHHHHCCCEEee
Confidence 344556677777778899999999874 6777887655 457766543
No 119
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=24.51 E-value=1.3e+02 Score=22.63 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=31.9
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
....-.|+..+..++..|..+|.+.+. ++.+||.+.++ +.||-.+
T Consensus 48 t~~~~~iL~~l~~~~~~t~~ela~~l~------is~~tvs~~l~~Le~~glv~r 95 (162)
T 2fa5_A 48 AIPEWRVITILALYPGSSASEVSDRTA------MDKVAVSRAVARLLERGFIRR 95 (162)
T ss_dssp CHHHHHHHHHHHHSTTCCHHHHHHHHT------CCHHHHHHHHHHHHHTTSEEC
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHC------CCHHHHHHHHHHHHHCCCEee
Confidence 344556677777778899999998874 67788876654 5676654
No 120
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=24.05 E-value=73 Score=21.83 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=17.7
Q ss_pred CHHHHHHHHHhccCccccHHHHHHHHHhcC
Q psy16970 25 TALEVRQELQDVRKVHLNEGTVRIRLNENN 54 (257)
Q Consensus 25 ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~ 54 (257)
|..||++.+ .||..||.|.|+..+
T Consensus 2 T~~diA~~a------GVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 2 KLDEIARLA------GVSRTTASYVINGKA 25 (65)
T ss_dssp CHHHHHHHH------TSCHHHHHHHHHTCT
T ss_pred CHHHHHHHH------CcCHHHHHHHHcCCC
Confidence 556666655 588999999998643
No 121
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=23.78 E-value=1.3e+02 Score=22.71 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=29.7
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
.+..|+..+.. ...|..||.+.| .+|..||.+.|+ +.|+-.+
T Consensus 47 ~rl~IL~~L~~-~~~s~~ela~~l------gis~stvs~~L~~Le~~Glv~~ 91 (122)
T 1r1t_A 47 NRLRLLSLLAR-SELCVGDLAQAI------GVSESAVSHQLRSLRNLRLVSY 91 (122)
T ss_dssp HHHHHHHHHTT-CCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeEE
Confidence 34567777654 458999999987 478889997655 5676644
No 122
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=23.78 E-value=1.2e+02 Score=22.50 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=32.5
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKR 59 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~ 59 (257)
....-.|+..+..++..|..+|.+.+ .++.+||.+.|. +.|+-.+.
T Consensus 39 t~~~~~iL~~l~~~~~~t~~ela~~l------~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 39 TVGQRAILEGLSLTPGATAPQLGAAL------QMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp CHHHHHHHHHHHHSTTEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCeeec
Confidence 34455667777777789999999987 467788876654 57766543
No 123
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=23.63 E-value=1.3e+02 Score=22.74 Aligned_cols=44 Identities=23% Similarity=0.272 Sum_probs=31.2
Q ss_pred HHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcc
Q psy16970 13 FIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTA 57 (257)
Q Consensus 13 ~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~ 57 (257)
.|+..+...| .+..||.++++..+-..++.+|++..|+ +.|+-.
T Consensus 17 ~IL~lL~~~p-~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~ 63 (116)
T 3hhh_A 17 LVLAIIQRKE-TYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVI 63 (116)
T ss_dssp HHHHHHHHSC-BCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEE
Confidence 4555555555 7888999999984434799999997666 466543
No 124
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=23.55 E-value=1.1e+02 Score=22.34 Aligned_cols=45 Identities=4% Similarity=0.039 Sum_probs=31.5
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
....-.|+..+..++..|..+|.+.+ .++.+||.+.|+ +.|+-.+
T Consensus 37 ~~~~~~iL~~l~~~~~~t~~ela~~l------~~~~~tvs~~l~~L~~~glv~r 84 (140)
T 2nnn_A 37 TPTQWAALVRLGETGPCPQNQLGRLT------AMDAATIKGVVERLDKRGLIQR 84 (140)
T ss_dssp CHHHHHHHHHHHHHSSBCHHHHHHHT------TCCHHHHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEEe
Confidence 34455666677666789999999886 467888887655 5676654
No 125
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=23.54 E-value=41 Score=25.08 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=24.6
Q ss_pred hCccc-CHHHHHHHHHhccCccccHHHHHHHHH---hcCCccccc
Q psy16970 20 RNCFA-TALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKRL 60 (257)
Q Consensus 20 ~~~~~-ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~~ 60 (257)
.+... |..+|++++ .+|..|||+.|. +.|+-.++.
T Consensus 39 ~g~~lps~~eLa~~l------gVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 39 GNEGLLVASKIADRV------GITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp TTEEEECHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 34444 888888887 479999997765 567655444
No 126
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=23.53 E-value=1.2e+02 Score=22.26 Aligned_cols=45 Identities=11% Similarity=0.009 Sum_probs=31.4
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKR 59 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~ 59 (257)
...-.|+..+..++..|..+|.+.+ .++.+||.+.+. +.|+-.+.
T Consensus 33 ~~~~~iL~~l~~~~~~~~~~la~~l------~~s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 33 PAQFDILQKIYFEGPKRPGELSVLL------GVAKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH------CCCchhHHHHHHHHHHCCCeeec
Confidence 4455666677667779999999987 467788876655 56766543
No 127
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=23.49 E-value=78 Score=27.00 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=18.9
Q ss_pred cCHHHHHHHHHhccCccccHHHHHHHHHhcC
Q psy16970 24 ATALEVRQELQDVRKVHLNEGTVRIRLNENN 54 (257)
Q Consensus 24 ~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~ 54 (257)
.|.+||++.. .||..||+|.|+..+
T Consensus 3 ~ti~dvA~~a------gVS~~TVSrvln~~~ 27 (332)
T 2hsg_A 3 VTIYDVAREA------SVSMATVSRVVNGNP 27 (332)
T ss_dssp CCHHHHHHHT------TSCHHHHHHHHTTCT
T ss_pred CCHHHHHHHh------CCCHHHHHHHHcCCC
Confidence 4677777765 588999999998753
No 128
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=23.18 E-value=43 Score=28.87 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=16.4
Q ss_pred CHHHHHHHHHhccCccccHHHHHHHHHhcC
Q psy16970 25 TALEVRQELQDVRKVHLNEGTVRIRLNENN 54 (257)
Q Consensus 25 ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~ 54 (257)
|.+||++.. .||..||+|.|+..+
T Consensus 2 ti~diA~~a------gVS~~TVSrvLn~~~ 25 (340)
T 1qpz_A 2 TIKDVAKRA------NVSTTTVSHVINKTR 25 (340)
T ss_dssp CHHHHHHHH------TSCHHHHHHHHHTCS
T ss_pred CHHHHHHHH------CCCHHHHHHHHcCcC
Confidence 556666654 478888888888654
No 129
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=23.03 E-value=1.1e+02 Score=22.84 Aligned_cols=26 Identities=12% Similarity=-0.063 Sum_probs=21.0
Q ss_pred cccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 22 CFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 22 ~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
...|..||++.| .+|.+||+++++++
T Consensus 123 ~g~s~~EIA~~l------gis~~tV~~~~~ra 148 (164)
T 3mzy_A 123 RGYSYREIATIL------SKNLKSIDNTIQRI 148 (164)
T ss_dssp TTCCHHHHHHHH------TCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH------CCCHHHHHHHHHHH
Confidence 456889999988 47999999988764
No 130
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=22.45 E-value=1.4e+02 Score=21.80 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=31.5
Q ss_pred hhhHHHHHHH-hhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccc
Q psy16970 9 MNDRFIVSQV-LRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKR 59 (257)
Q Consensus 9 ~~~r~i~r~v-~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~ 59 (257)
...-.|+..+ ..++..|..+|.+.+ .++.+||.+.+. +.|+-.+.
T Consensus 37 ~~~~~iL~~l~~~~~~~t~~~la~~l------~~s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 37 QARWLVLLHLARHRDSPTQRELAQSV------GVEGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp TTHHHHHHHHHHCSSCCBHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHh------CCChhhHHHHHHHHHHCCCeeec
Confidence 3445566666 677889999999987 367788876554 67766543
No 131
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=22.38 E-value=1.4e+02 Score=22.40 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=31.6
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHH---HhcCCcccc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRL---NENNLTAKR 59 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L---~~~~l~~~~ 59 (257)
...-.|+..+..++..|..+|.+.+. ++.+||.+.| .+.|+-.+.
T Consensus 47 ~~~~~iL~~l~~~~~~t~~ela~~l~------~s~~tvs~~l~~Le~~glv~r~ 94 (153)
T 2pex_A 47 YPQYLVMLVLWETDERSVSEIGERLY------LDSATLTPLLKRLQAAGLVTRT 94 (153)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHHT------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhC------CCcccHHHHHHHHHHCCCEeec
Confidence 34555666776777799999998874 6788888665 457766543
No 132
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=22.29 E-value=1.4e+02 Score=22.36 Aligned_cols=44 Identities=7% Similarity=0.153 Sum_probs=31.5
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
...-.++..+..++..|..+|.+.+. ++.+||.+.++ +.|+-.+
T Consensus 41 ~~~~~iL~~l~~~~~~t~~eLa~~l~------~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 41 IQQLAMINVIYSTPGISVADLTKRLI------ITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHHHSTTEEHHHHHHHHT------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC------CCHHHHHHHHHHHHHCCCEEe
Confidence 34456667777777799999999884 57777776554 5777665
No 133
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=22.29 E-value=1.3e+02 Score=21.95 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=28.8
Q ss_pred hHHHHHHHh-hCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccc
Q psy16970 11 DRFIVSQVL-RNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKR 59 (257)
Q Consensus 11 ~r~i~r~v~-~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~ 59 (257)
.-.+...+. .++..|..||.+.+. ++.+||.+.|+ +.|+-.+.
T Consensus 28 ~~~il~~L~~~~~~~t~~ela~~l~------~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 28 VGAVYAILYLSDKPLTISDIMEELK------ISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHHT------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHC------cCHHHHHHHHHHHHHCCCEEEE
Confidence 334444443 456699999999884 68888887655 57776553
No 134
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=22.22 E-value=1.3e+02 Score=22.66 Aligned_cols=44 Identities=7% Similarity=-0.053 Sum_probs=31.4
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
...-.|+..+..++..|..+|.+.+ .++.+||.+.|+ +.|+-.+
T Consensus 52 ~~~~~iL~~l~~~~~~t~~ela~~l------~is~~tvs~~l~~Le~~Gli~r 98 (162)
T 3cjn_A 52 TAKMRALAILSAKDGLPIGTLGIFA------VVEQSTLSRALDGLQADGLVRR 98 (162)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH------CCChhHHHHHHHHHHHCCCEEe
Confidence 3455666677777779999999987 467888886655 5676654
No 135
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=22.05 E-value=1.7e+02 Score=21.25 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=32.9
Q ss_pred hhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHH---HHHHhcCCccccc
Q psy16970 10 NDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVR---IRLNENNLTAKRL 60 (257)
Q Consensus 10 ~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvr---r~L~~~~l~~~~~ 60 (257)
..-.++..+-.++..|+.||...+.... .++.+||. .+|.+.|+-.+..
T Consensus 11 ~q~~vL~~L~~~~~~t~~el~~~l~~~~--~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 11 AEWDVMNIIWDKKSVSANEIVVEIQKYK--EVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhhcC--CCChhhHHHHHHHHHHCCceEEEe
Confidence 4445666666677799999999997421 34556665 5566788776543
No 136
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=21.92 E-value=1.2e+02 Score=22.85 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=31.3
Q ss_pred HHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcc
Q psy16970 13 FIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTA 57 (257)
Q Consensus 13 ~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~ 57 (257)
.|+..+...| .+..+|.+++...+-..+|.+|++..|+ +.|+-.
T Consensus 15 ~IL~lL~~~p-~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~ 61 (117)
T 4esf_A 15 CVLEIISRRE-TYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVN 61 (117)
T ss_dssp HHHHHHHHSC-BCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEE
Confidence 3455555444 7889999999886544799999997766 466553
No 137
>2ofz_A Nucleocapsid protein; SARS coronavirus nucleocapsid RNA binding N-terminal domain, N protein, SARS-ORF9A, viral protein; 1.17A {Sars coronavirus TOR2} PDB: 2og3_A
Probab=21.78 E-value=55 Score=26.50 Aligned_cols=8 Identities=50% Similarity=0.978 Sum_probs=6.3
Q ss_pred eeccCCCC
Q psy16970 161 FSYDGEAP 168 (257)
Q Consensus 161 FsydG~gP 168 (257)
|.|.|.||
T Consensus 75 FYYlGTGP 82 (138)
T 2ofz_A 75 FYYLGTGP 82 (138)
T ss_dssp EEETTCST
T ss_pred EEEeCCCc
Confidence 77888887
No 138
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=21.60 E-value=1.1e+02 Score=22.68 Aligned_cols=48 Identities=8% Similarity=0.126 Sum_probs=31.3
Q ss_pred CCchhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHH---HHhcCCcccc
Q psy16970 6 GASMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIR---LNENNLTAKR 59 (257)
Q Consensus 6 ~~~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~---L~~~~l~~~~ 59 (257)
|=....-.++..+..++..|..+|.+.+. ++.+||.+. |.+.|+-.+.
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~------~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMC------RDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---------CHHHHHHHHHHHTTSEEC-
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhC------CCHHHHHHHHHHHHHCCCEeec
Confidence 33455667777777778899999999874 566666655 5567776543
No 139
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=21.47 E-value=1e+02 Score=21.74 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=26.1
Q ss_pred CchhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 7 ASMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 7 ~~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
++++.. ++..+. ...|..||++.| .+|.+||+.++++.
T Consensus 31 t~~e~~-vl~l~~--~g~s~~eIA~~l------~is~~tV~~~l~r~ 68 (91)
T 2rnj_A 31 TEREME-ILLLIA--KGYSNQEIASAS------HITIKTVKTHVSNI 68 (91)
T ss_dssp CSHHHH-HHHHHH--TTCCTTHHHHHH------TCCHHHHHHHHHHH
T ss_pred CHHHHH-HHHHHH--cCCCHHHHHHHH------CcCHHHHHHHHHHH
Confidence 444444 444443 347889999988 47999999888754
No 140
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=21.37 E-value=1.5e+02 Score=21.66 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=30.7
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHH---HhcCCccc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRL---NENNLTAK 58 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L---~~~~l~~~ 58 (257)
....-.++..+..++..|..+|.+.+ .++.+||.+.+ .+.|+-.+
T Consensus 33 t~~~~~iL~~l~~~~~~~~~~la~~l------~~~~~tvs~~l~~L~~~gli~r 80 (138)
T 1jgs_A 33 TAAQFKVLCSIRCAACITPVELKKVL------SVDLGALTRMLDRLVCKGWVER 80 (138)
T ss_dssp CHHHHHHHHHHHHHSSBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHH------CCChHHHHHHHHHHHHCCCEEe
Confidence 34455566666666778999999776 46777877654 46776654
No 141
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=21.36 E-value=1.4e+02 Score=22.08 Aligned_cols=45 Identities=16% Similarity=0.040 Sum_probs=31.4
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHH---HHhcCCccc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIR---LNENNLTAK 58 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~---L~~~~l~~~ 58 (257)
....-.++..+..++..|..+|.+.+ .++.+||.+. |.+.|+-.+
T Consensus 30 t~~q~~iL~~l~~~~~~t~~eLa~~l------~~~~~tvs~~l~~Le~~Glv~r 77 (145)
T 3g3z_A 30 NYNLFAVLYTLATEGSRTQKHIGEKW------SLPKQTVSGVCKTLAGQGLIEW 77 (145)
T ss_dssp CHHHHHHHHHHHHHCSBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEee
Confidence 34455666666666679999999887 4677788766 556777654
No 142
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=21.24 E-value=53 Score=21.07 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=23.6
Q ss_pred HHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 12 RFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 12 r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
+.++..+.. ..|..||++.| .+|..||+..+++.
T Consensus 4 ~~vl~l~~~--g~s~~eIA~~l------~is~~tV~~~~~~~ 37 (61)
T 2jpc_A 4 RQVLKLIDE--GYTNHGISEKL------HISIKTVETHRMNM 37 (61)
T ss_dssp HHHHHHHHT--SCCSHHHHHHT------CSCHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCHHHHHHHh------CCCHHHHHHHHHHH
Confidence 344444433 35778999887 57999999888753
No 143
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=20.95 E-value=1.5e+02 Score=21.98 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=30.6
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAK 58 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~ 58 (257)
...-.|+..+..++..|..+|.+.+ .++.+||.+.|+ +.|+-.+
T Consensus 42 ~~~~~iL~~l~~~~~~t~~ela~~l------~~~~~tvs~~l~~Le~~Glv~r 88 (150)
T 2rdp_A 42 PPQFVALQWLLEEGDLTVGELSNKM------YLACSTTTDLVDRMERNGLVAR 88 (150)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHH------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH------CCCchhHHHHHHHHHHCCCeee
Confidence 3445566666666779999999887 467788876655 5676654
No 144
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=20.90 E-value=78 Score=25.85 Aligned_cols=35 Identities=23% Similarity=0.125 Sum_probs=29.7
Q ss_pred hCcccCHHHHHHHHHhccCccccHHHHHHHHHhcCCccccc
Q psy16970 20 RNCFATALEVRQELQDVRKVHLNEGTVRIRLNENNLTAKRL 60 (257)
Q Consensus 20 ~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~~l~~~~~ 60 (257)
.+.+.|..|+++.| .||.+||++.+++-.|.+-+.
T Consensus 28 ~~~~LTv~EVAe~L------gVs~srV~~LIr~G~L~AVr~ 62 (148)
T 2kfs_A 28 DEPTYDLPRVAELL------GVPVSKVAQQLREGHLVAVRR 62 (148)
T ss_dssp TSCEEEHHHHHHHH------TCCHHHHHHHHHTTSCCCEEE
T ss_pred cCceEcHHHHHHHh------CCCHHHHHHHHHCCCceEEEE
Confidence 35789999999998 489999999999999887544
No 145
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=20.59 E-value=1.1e+02 Score=22.32 Aligned_cols=45 Identities=2% Similarity=0.024 Sum_probs=30.7
Q ss_pred hhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccc
Q psy16970 9 MNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKR 59 (257)
Q Consensus 9 ~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~ 59 (257)
...-.++..+..++..|..+|.+.+ .++.+||.+.++ +.|+-.+.
T Consensus 36 ~~~~~iL~~l~~~~~~t~~ela~~l------~~s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 36 EQQWRVIRILRQQGEMESYQLANQA------CILRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHT------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH------CCCHhHHHHHHHHHHHCCCEEee
Confidence 3445566666666679999999876 467788876555 57766543
No 146
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=20.53 E-value=1.5e+02 Score=21.67 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=31.0
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKR 59 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~ 59 (257)
....-.|+..+. ++..|..+|.+.+ .++.+||.+.|+ +.|+-.+.
T Consensus 36 ~~~~~~iL~~l~-~~~~~~~ela~~l------~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 36 SYLDFLVLRATS-DGPKTMAYLANRY------FVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp CHHHHHHHHHHT-TSCBCHHHHHHHT------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHh-cCCcCHHHHHHHh------CCCchhHHHHHHHHHHCCCEEee
Confidence 344555666666 7779999999887 467888886654 57766543
No 147
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=20.51 E-value=84 Score=22.10 Aligned_cols=26 Identities=19% Similarity=0.026 Sum_probs=21.9
Q ss_pred cccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 22 CFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 22 ~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
...|..||+..| .+|..||+++++++
T Consensus 37 ~~~s~~EIA~~l------gis~~tV~~~~~ra 62 (87)
T 1tty_A 37 KPKTLEEVGQYF------NVTRERIRQIEVKA 62 (87)
T ss_dssp SCCCHHHHHHHH------TCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH------CCCHHHHHHHHHHH
Confidence 458999999987 48999999988764
No 148
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=20.38 E-value=1.2e+02 Score=22.74 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=40.3
Q ss_pred HHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCccccc--------ccCCCcchHHHHhhhh
Q psy16970 12 RFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKRL--------HRAPELSIRNQRARSR 76 (257)
Q Consensus 12 r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~~--------~~~p~l~~~~~~~r~~ 76 (257)
-.|+..+...| .+..+|.+++...+-..+|.+||+..|+ +.|+-.+.. ++--.||+.=++.-.+
T Consensus 12 ~~IL~~L~~~~-~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~ 86 (115)
T 4esb_A 12 GCILYIISQEE-VYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEE 86 (115)
T ss_dssp HHHHHHHHHSC-EEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHH
Confidence 34555555554 7889999999874434799999997766 466553321 2223477766554444
No 149
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=20.32 E-value=1.2e+02 Score=22.66 Aligned_cols=46 Identities=13% Similarity=0.297 Sum_probs=31.9
Q ss_pred chhhHHHHHHHhhCcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccc
Q psy16970 8 SMNDRFIVSQVLRNCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKR 59 (257)
Q Consensus 8 ~~~~r~i~r~v~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~ 59 (257)
....-.|+..+..++..|..+|.+.+ .++.+||.+.++ +.|+-.+.
T Consensus 36 ~~~~~~iL~~l~~~~~~t~~ela~~l------~~s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 36 TPAQLFVLASLKKHGSLKVSEIAERM------EVKPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp CHHHHHHHHHHHHHSEEEHHHHHHHH------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH------CCCHHHHHHHHHHHHHCCCEeec
Confidence 34455666667666778999999987 467888886655 57766543
No 150
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=20.31 E-value=1.8e+02 Score=21.08 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=30.9
Q ss_pred hhhHHHHHHHhhCc--ccCHHHHHHHHHhccCccccHHHHHHHH---HhcCCcccc
Q psy16970 9 MNDRFIVSQVLRNC--FATALEVRQELQDVRKVHLNEGTVRIRL---NENNLTAKR 59 (257)
Q Consensus 9 ~~~r~i~r~v~~~~--~~ta~~i~~~l~~~~g~~~s~~Tvrr~L---~~~~l~~~~ 59 (257)
...-.++..+...+ ..|..+|.+.+. ++.+||.+.+ .+.|+-.+.
T Consensus 34 ~~~~~iL~~l~~~~~~~~~~~ela~~l~------~~~~tvs~~l~~Le~~Gli~r~ 83 (141)
T 3bro_A 34 GTQMTIIDYLSRNKNKEVLQRDLESEFS------IKSSTATVLLQRMEIKKLLYRK 83 (141)
T ss_dssp HHHHHHHHHHHHTTTSCCBHHHHHHHHT------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHC------CCcchHHHHHHHHHHCCCEEee
Confidence 34455666666666 689999999874 6777877654 457766553
No 151
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=20.17 E-value=1.3e+02 Score=22.25 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=30.9
Q ss_pred hhHHHHHHHhh-CcccCHHHHHHHHHhccCccccHHHHHHHHH---hcCCcccc
Q psy16970 10 NDRFIVSQVLR-NCFATALEVRQELQDVRKVHLNEGTVRIRLN---ENNLTAKR 59 (257)
Q Consensus 10 ~~r~i~r~v~~-~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~---~~~l~~~~ 59 (257)
..-.++..+.. ++..|..+|...+ .++.+||.+.++ +.|+-.+.
T Consensus 36 ~~~~iL~~l~~~~~~~~~~~la~~l------~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 36 SQLVVLGAIDRLGGDVTPSELAAAE------RMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHT------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHh------CCChhhHHHHHHHHHHCCCEeeC
Confidence 34456666666 7789999999987 468888876655 56766543
No 152
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=20.11 E-value=1e+02 Score=27.03 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=25.9
Q ss_pred hhCcccCHHHHHHHHHhccCccccHHHHHHHHHh---cCCcc
Q psy16970 19 LRNCFATALEVRQELQDVRKVHLNEGTVRIRLNE---NNLTA 57 (257)
Q Consensus 19 ~~~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~---~~l~~ 57 (257)
......|..||.+.| .+|+.||||-|.+ .|+-.
T Consensus 17 ~~~~~~~~~ela~~l------~vS~~tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 17 YYEQDMTQAQIAREL------GIYRTTISRLLKRGREQGIVT 52 (315)
T ss_dssp HHTSCCCHHHHHHHT------TCCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCcEE
Confidence 455669999999987 5899999998874 55553
No 153
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=20.10 E-value=1.5e+02 Score=21.69 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=30.4
Q ss_pred chhhHHHHHHHhh--CcccCHHHHHHHHHhccCccccHHHHHHHHHhc
Q psy16970 8 SMNDRFIVSQVLR--NCFATALEVRQELQDVRKVHLNEGTVRIRLNEN 53 (257)
Q Consensus 8 ~~~~r~i~r~v~~--~~~~ta~~i~~~l~~~~g~~~s~~Tvrr~L~~~ 53 (257)
......|...+.. ++.++..||+..+ .++..||.+.|.+.
T Consensus 19 t~~q~~Vl~~I~~~g~~gi~qkeLa~~~------~l~~~tvt~iLk~L 60 (91)
T 2dk5_A 19 DNQEKLVYQIIEDAGNKGIWSRDVRYKS------NLPLTEINKILKNL 60 (91)
T ss_dssp CSSHHHHHHHHHHHCTTCEEHHHHHHHT------TCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCcCHHHHHHHH------CCCHHHHHHHHHHH
Confidence 3456777777776 7789999999987 46788888777654
Done!