RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16970
         (257 letters)



>d1k7ca_ c.23.10.4 (A:) Rhamnogalacturonan acetylesterase {Fungus
           (Aspergillus aculeatus) [TaxId: 5053]}
          Length = 233

 Score = 27.7 bits (60), Expect = 1.3
 Identities = 23/142 (16%), Positives = 39/142 (27%), Gaps = 5/142 (3%)

Query: 46  VRIRLNENNLTAKRLHRAPELSIRNQRARSRKVENVVLKPVLGQIYIYIYHMHWTPAQQA 105
           V +    N+  +                    V + V + +L              A+ A
Sbjct: 67  VIVEFGHNDGGSLSTDNGRTDCSGTGAEVCYSVYDGVNETILTFPAYLENAAKLFTAKGA 126

Query: 106 NVLFSDEPRVNFGDVRIPKGFDFPRPQKIGQLAGVHGVSSDPIVIVDAQTLLVPNFSYDG 165
            V+ S +   N  +            +     A V GV       VD  + +   +   G
Sbjct: 127 KVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVE-----YVDHWSYVDSIYETLG 181

Query: 166 EAPDAKFWVGTGPHPSPQGIRV 187
            A    ++     H SP G  V
Sbjct: 182 NATVNSYFPIDHTHTSPAGAEV 203


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,000,760
Number of extensions: 48018
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 3
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)