BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16971
         (383 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9GPJ1|SKEL2_DROME Protein Skeletor, isoforms D/E OS=Drosophila melanogaster
           GN=Skeletor PE=1 SV=3
          Length = 1503

 Score =  478 bits (1229), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/402 (58%), Positives = 280/402 (69%), Gaps = 27/402 (6%)

Query: 1   MEFGEYMSFGLSGDPLRNQMIGADVVVAWIDQETLNGYAVDYYLTDKSQCAGGRGSCPDY 60
           +E   YMSFG+S +   +QMIGAD VVAW+D +T NG+A DY+L  K+QC+GGRG+CPD 
Sbjct: 308 LEPNHYMSFGISPNKNISQMIGADAVVAWVDPQTGNGFATDYFLEGKAQCSGGRGACPDT 367

Query: 61  RIQDNTESVRLLNAALVNGYSIVTYQRPLRSHDILDHDIYTNQSQAIIWAIGPLNSKQEV 120
           +I + T S+RLLNAA+VNGYSIVTYQR L + D LD  I    +++++WAIGPLN  QEV
Sbjct: 368 KISEKTNSIRLLNAAMVNGYSIVTYQRSLAATDRLDLPISITGAESVVWAIGPLNDYQEV 427

Query: 121 SFHSVFPKKNILFNFGRTPYWNCPIPEGETGTPNHGEYSDESSGANTKVQEVLGYWVIVS 180
           SFH+ + K      FGR P WNCP+PEG  G  N  E  D +  A +      GY     
Sbjct: 428 SFHTFYNKHLHQIEFGRQPKWNCPLPEGARGNSNSSEQEDSAPAAQSSTGGA-GYPPAGR 486

Query: 181 VAVEP----------ARSKSPP----------------TPAPAPRDEAWEIPPIQCNEPD 214
             VEP          A  + PP                TP P   + AW+IP IQC+EP+
Sbjct: 487 PNVEPDEEFYENRAEALHRQPPQRRQETAIITQRRPVPTPKPVNSNGAWDIPAIQCHEPE 546

Query: 215 DGVLYAQMGPTGGKRGYPAITGHVGWGISWYINGLLIPEINVVRGKTYTFIVEGGLDPNT 274
           DGV YAQMGPTGGK GYPAITGHVGWGISWYINGLLIPEI+VVRGKTYTF+VEGG +P+ 
Sbjct: 547 DGVFYAQMGPTGGKHGYPAITGHVGWGISWYINGLLIPEIHVVRGKTYTFVVEGGNNPDI 606

Query: 275 PAKYHPFYITDDSVGGYQHKTPEEKEKVRIFAGAKRDKFGNVVPTGVGRLCNWTPDPEQP 334
           PAKYHPFYI+DD VGGY+HK  EEK+ VRI+AG  R + G V PTGVGRLCNWTPD E P
Sbjct: 607 PAKYHPFYISDDPVGGYEHKREEEKKAVRIYAGVHRSRSGQVTPTGVGRLCNWTPDVEGP 666

Query: 335 PADEFVSFGAYQRTLSLICDHGEPGVIQWTPDANTPDTVYYQ 376
           PAD++ SFGAYQRTL+L CD GEPGVI W PD NTPDTVYY 
Sbjct: 667 PADDYQSFGAYQRTLTLKCDAGEPGVITWKPDRNTPDTVYYH 708


>sp|Q9VGY6|SKEL1_DROME Protein Skeletor, isoforms B/C OS=Drosophila melanogaster
           GN=Skeletor PE=1 SV=2
          Length = 784

 Score =  474 bits (1219), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/402 (58%), Positives = 280/402 (69%), Gaps = 27/402 (6%)

Query: 1   MEFGEYMSFGLSGDPLRNQMIGADVVVAWIDQETLNGYAVDYYLTDKSQCAGGRGSCPDY 60
           +E   YMSFG+S +   +QMIGAD VVAW+D +T NG+A DY+L  K+QC+GGRG+CPD 
Sbjct: 308 LEPNHYMSFGISPNKNISQMIGADAVVAWVDPQTGNGFATDYFLEGKAQCSGGRGACPDT 367

Query: 61  RIQDNTESVRLLNAALVNGYSIVTYQRPLRSHDILDHDIYTNQSQAIIWAIGPLNSKQEV 120
           +I + T S+RLLNAA+VNGYSIVTYQR L + D LD  I    +++++WAIGPLN  QEV
Sbjct: 368 KISEKTNSIRLLNAAMVNGYSIVTYQRSLAATDRLDLPISITGAESVVWAIGPLNDYQEV 427

Query: 121 SFHSVFPKKNILFNFGRTPYWNCPIPEGETGTPNHGEYSDESSGANTKVQEVLGYWVIVS 180
           SFH+ + K      FGR P WNCP+PEG  G  N  E  D +  A +      GY     
Sbjct: 428 SFHTFYNKHLHQIEFGRQPKWNCPLPEGARGNSNSSEQEDSAPAAQSSTGGA-GYPPAGR 486

Query: 181 VAVEP----------ARSKSPP----------------TPAPAPRDEAWEIPPIQCNEPD 214
             VEP          A  + PP                TP P   + AW+IP IQC+EP+
Sbjct: 487 PNVEPDEEFYENRAEALHRQPPQRRQETAIITQRRPVPTPKPVNSNGAWDIPAIQCHEPE 546

Query: 215 DGVLYAQMGPTGGKRGYPAITGHVGWGISWYINGLLIPEINVVRGKTYTFIVEGGLDPNT 274
           DGV YAQMGPTGGK GYPAITGHVGWGISWYINGLLIPEI+VVRGKTYTF+VEGG +P+ 
Sbjct: 547 DGVFYAQMGPTGGKHGYPAITGHVGWGISWYINGLLIPEIHVVRGKTYTFVVEGGNNPDI 606

Query: 275 PAKYHPFYITDDSVGGYQHKTPEEKEKVRIFAGAKRDKFGNVVPTGVGRLCNWTPDPEQP 334
           PAKYHPFYI+DD VGGY+HK  EEK+ VRI+AG  R + G V PTGVGRLCNWTPD E P
Sbjct: 607 PAKYHPFYISDDPVGGYEHKREEEKKAVRIYAGVHRSRSGQVTPTGVGRLCNWTPDVEGP 666

Query: 335 PADEFVSFGAYQRTLSLICDHGEPGVIQWTPDANTPDTVYYQ 376
           PAD++ SFGAYQRTL+L CD GEPGVI W PD NTPDTVYY 
Sbjct: 667 PADDYQSFGAYQRTLTLKCDAGEPGVITWKPDRNTPDTVYYH 708


>sp|B8I5M2|AROA_CLOCE 3-phosphoshikimate 1-carboxyvinyltransferase OS=Clostridium
           cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584
           / H10) GN=aroA PE=3 SV=1
          Length = 422

 Score = 32.7 bits (73), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 16  LRNQMIGADVVVAWIDQETLNGYAVDYYLTDKSQCAGGRGSCPDY-----RIQDNTESVR 70
           +RN ++  D V           +   Y L ++S    G G+CP        + ++  S+R
Sbjct: 39  IRNPLLSTDAVSGV---NVCRAFGSTYDLNNESYVVNGMGACPQVPENVIDVGNSGTSLR 95

Query: 71  L--LNAALVNGYSIVTYQRPLRSHDI 94
           L  + AALV+GY++ T    +R   I
Sbjct: 96  LGLMTAALVDGYTVFTGDYQIRKRQI 121


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.137    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,596,937
Number of Sequences: 539616
Number of extensions: 8251323
Number of successful extensions: 18676
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 18658
Number of HSP's gapped (non-prelim): 26
length of query: 383
length of database: 191,569,459
effective HSP length: 119
effective length of query: 264
effective length of database: 127,355,155
effective search space: 33621760920
effective search space used: 33621760920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)