Query psy16971
Match_columns 383
No_of_seqs 171 out of 242
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 18:24:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4731|consensus 100.0 2.9E-30 6.2E-35 260.8 12.6 288 5-354 210-511 (512)
2 smart00664 DoH Possible catech 99.8 2.7E-20 5.9E-25 162.0 14.5 118 4-137 27-145 (148)
3 PF03351 DOMON: DOMON domain; 99.8 4.3E-19 9.2E-24 149.2 12.8 95 4-112 29-124 (124)
4 KOG3568|consensus 99.5 3.5E-14 7.5E-19 145.5 6.3 113 3-133 66-179 (603)
5 KOG4731|consensus 98.1 3.5E-06 7.6E-11 87.1 6.1 103 216-331 305-407 (512)
6 cd00241 CDH_cytochrome Cellobi 96.8 0.021 4.6E-07 53.4 12.1 115 3-138 51-174 (184)
7 PF09459 EB_dh: Ethylbenzene d 88.8 0.65 1.4E-05 45.3 4.9 40 73-112 208-249 (261)
8 TIGR03477 DMSO_red_II_gam DMSO 78.6 4.2 9E-05 38.9 5.4 40 73-112 144-183 (205)
9 TIGR02656 cyanin_plasto plasto 65.6 33 0.00072 28.3 7.3 43 218-285 1-43 (99)
10 PF04526 DUF568: Protein of un 65.0 89 0.0019 26.7 10.6 88 20-126 1-89 (101)
11 cd04972 Ig_TrkABC_d4 Fourth do 57.6 20 0.00044 28.3 4.5 19 234-252 24-42 (90)
12 COG2025 FixB Electron transfer 51.1 7.6 0.00016 39.4 1.2 30 2-31 251-281 (313)
13 cd05855 Ig_TrkB_d5 Fifth domai 50.3 11 0.00024 30.3 1.8 20 234-253 7-26 (79)
14 cd05863 Ig2_VEGFR-3 Second imm 48.9 15 0.00032 28.5 2.3 19 234-252 7-25 (67)
15 PF07679 I-set: Immunoglobulin 48.7 20 0.00043 27.6 3.1 39 234-285 24-62 (90)
16 TIGR03154 sulfolob_CbsA cytoch 48.5 63 0.0014 33.8 7.2 82 29-116 301-396 (465)
17 PRK03363 fixB putative electro 47.2 8.2 0.00018 39.1 0.8 29 2-30 252-281 (313)
18 cd05864 Ig2_VEGFR-2 Second imm 46.6 23 0.00049 27.4 3.0 20 234-253 7-26 (70)
19 cd05867 Ig4_L1-CAM_like Fourth 45.2 15 0.00033 28.0 1.9 20 234-253 10-29 (76)
20 PLN00022 electron transfer fla 45.0 10 0.00022 39.1 1.1 29 2-30 293-322 (356)
21 PF00394 Cu-oxidase: Multicopp 41.9 34 0.00074 30.3 3.9 54 249-310 57-118 (159)
22 PRK11916 electron transfer fla 41.4 12 0.00026 37.9 0.9 29 2-30 251-280 (312)
23 cd04978 Ig4_L1-NrCAM_like Four 38.8 24 0.00052 26.4 2.1 18 235-252 11-28 (76)
24 cd04971 Ig_TrKABC_d5 Fifth dom 38.8 21 0.00047 28.2 1.9 19 234-252 7-25 (81)
25 PF00127 Copper-bind: Copper b 38.7 1.2E+02 0.0026 24.8 6.4 27 252-285 17-43 (99)
26 cd05737 Ig_Myomesin_like_C C-t 38.5 54 0.0012 26.0 4.2 18 234-251 25-42 (92)
27 PF02550 AcetylCoA_hydro: Acet 37.5 5.9 0.00013 36.8 -1.8 37 1-39 135-171 (198)
28 TIGR03095 rusti_cyanin rusticy 36.3 60 0.0013 29.2 4.5 39 243-285 43-81 (148)
29 PRK10883 FtsI repressor; Provi 35.0 42 0.00091 35.6 3.8 47 243-291 211-261 (471)
30 cd05868 Ig4_NrCAM Fourth immun 34.4 61 0.0013 24.9 3.8 19 234-252 10-28 (76)
31 TIGR03389 laccase laccase, pla 33.9 73 0.0016 34.2 5.5 65 243-310 168-245 (539)
32 cd05760 Ig2_PTK7 Second immuno 33.7 31 0.00067 26.6 2.0 17 235-251 8-24 (77)
33 TIGR02376 Cu_nitrite_red nitri 33.6 2.3E+02 0.0049 28.4 8.6 38 243-283 49-87 (311)
34 PF00868 Transglut_N: Transglu 33.3 37 0.00081 29.3 2.6 21 250-270 23-43 (118)
35 cd07693 Ig1_Robo First immunog 33.2 94 0.002 23.9 4.7 19 235-253 26-44 (100)
36 cd05744 Ig_Myotilin_C_like Imm 33.1 33 0.00072 26.4 2.1 19 234-252 7-25 (75)
37 cd05748 Ig_Titin_like Immunogl 30.8 37 0.00079 25.5 1.9 18 234-251 8-25 (74)
38 PLN02835 oxidoreductase 29.8 61 0.0013 35.1 4.1 29 243-271 193-222 (539)
39 cd05745 Ig3_Peroxidasin Third 29.3 40 0.00087 25.5 2.0 18 235-252 12-29 (74)
40 cd04976 Ig2_VEGFR Second immun 28.9 55 0.0012 24.9 2.7 20 234-253 7-26 (71)
41 PRK02710 plastocyanin; Provisi 28.5 90 0.002 26.7 4.2 38 216-272 29-66 (119)
42 cd05892 Ig_Myotilin_C C-termin 28.5 41 0.00089 26.3 1.9 19 234-252 7-25 (75)
43 cd05739 Ig3_RPTP_IIa_LAR_like 28.2 76 0.0016 24.1 3.3 19 235-253 11-29 (69)
44 PLN02168 copper ion binding / 28.0 82 0.0018 34.2 4.7 50 243-293 190-244 (545)
45 cd02856 Glycogen_debranching_e 27.7 80 0.0017 26.0 3.6 40 243-287 46-85 (103)
46 PLN02991 oxidoreductase 27.5 64 0.0014 35.1 3.7 48 243-291 192-243 (543)
47 cd05885 Ig2_Necl-4 Second immu 27.5 1.2E+02 0.0026 24.5 4.5 19 236-254 11-29 (80)
48 cd05848 Ig1_Contactin-5 First 26.7 79 0.0017 25.4 3.3 18 235-252 29-46 (94)
49 cd05743 Ig_Perlecan_D2_like Im 26.7 43 0.00094 25.7 1.7 19 235-253 11-29 (78)
50 cd05895 Ig_Pro_neuregulin-1 Im 26.0 54 0.0012 24.8 2.1 17 236-252 10-26 (76)
51 PF07711 RabGGT_insert: Rab ge 25.0 53 0.0011 28.4 2.0 41 69-109 3-43 (102)
52 cd05728 Ig4_Contactin-2-like F 24.4 53 0.0011 25.7 1.9 18 235-252 24-41 (85)
53 cd05893 Ig_Palladin_C C-termin 24.3 51 0.0011 25.6 1.7 19 234-252 7-25 (75)
54 PRK10965 multicopper oxidase; 23.8 77 0.0017 34.2 3.5 49 241-291 212-264 (523)
55 cd05850 Ig1_Contactin-2 First 23.8 63 0.0014 25.9 2.2 18 235-252 29-46 (94)
56 cd02178 GH16_beta_agarase Beta 23.5 1E+02 0.0022 29.7 3.9 11 241-251 193-203 (258)
57 smart00408 IGc2 Immunoglobulin 22.8 1.4E+02 0.0031 20.0 3.7 16 237-252 14-29 (63)
58 PRK10965 multicopper oxidase; 22.7 77 0.0017 34.2 3.2 39 242-284 412-454 (523)
59 smart00758 PA14 domain in bact 22.6 1.8E+02 0.0039 24.5 5.0 15 254-268 96-110 (136)
60 KOG3954|consensus 22.1 61 0.0013 32.8 2.2 44 2-45 274-319 (336)
61 cd05859 Ig4_PDGFR-alpha Fourth 22.1 57 0.0012 27.0 1.7 19 235-253 28-46 (101)
62 cd07702 Ig2_VEGFR-1 Second imm 21.9 64 0.0014 25.3 1.9 20 234-253 7-26 (72)
63 PF12000 Glyco_trans_4_3: Gkyc 21.7 36 0.00079 31.6 0.5 36 234-270 70-105 (171)
64 cd05763 Ig_1 Subgroup of the i 21.6 74 0.0016 24.0 2.1 17 234-250 7-23 (75)
65 cd05773 Ig8_hNephrin_like Eigh 20.9 80 0.0017 26.2 2.4 18 235-252 33-50 (109)
66 cd05736 Ig2_Follistatin_like S 20.6 76 0.0016 23.9 2.0 18 234-251 7-24 (76)
67 cd05875 Ig6_hNeurofascin_like 20.5 1.9E+02 0.0041 22.3 4.3 18 234-251 7-24 (77)
68 cd05729 Ig2_FGFR_like Second i 20.3 2.5E+02 0.0054 20.8 4.8 17 236-252 20-36 (85)
69 PF12480 DUF3699: Protein of u 20.2 87 0.0019 25.5 2.3 29 346-374 26-54 (77)
No 1
>KOG4731|consensus
Probab=99.97 E-value=2.9e-30 Score=260.81 Aligned_cols=288 Identities=14% Similarity=0.069 Sum_probs=225.4
Q ss_pred cEEEEeecCC-CCCCCCccccEEEEEEeCCCCceEEEEeeeeCCCccc----CCCCCCCCccccC------CccceEEEe
Q psy16971 5 EYMSFGLSGD-PLRNQMIGADVVVAWIDQETLNGYAVDYYLTDKSQCA----GGRGSCPDYRIQD------NTESVRLLN 73 (383)
Q Consensus 5 ~YmAFG~S~~-~~~~~M~GADVVVa~vD~~~G~~~a~Dyyit~~s~C~----~~~GvcPDt~~gd------gtnDi~Lvs 73 (383)
.+|||++... ...-.|.+++.||..++.+ +. ++.+-||+-+..|. +.-++|+|+.+.. ..+.. .++
T Consensus 210 ai~~~~~~~~~~~sl~~~n~k~Ivl~Lped-~t-IfDI~wIsV~c~ky~~dfGhv~v~~d~n~e~~~~~v~si~~s-k~~ 286 (512)
T KOG4731|consen 210 AIMAFDDEKGYETSLRMYNAKDIVLELPED-GT-IFDIDWISVYCVKYVVDFGHVLVPPDLNVEPSPPYVPSINNS-KVN 286 (512)
T ss_pred eeecccccccCCchhHhhccceEEEECCCC-Cc-EEeeceEEEEEEEEeeccceeecCCccccCcCCCccCccccc-ccc
Confidence 5899999644 3567899999999999764 55 88889999987775 3567899877642 12333 388
Q ss_pred eEEECCEEEEEEEccCCCCCCCCccccCCCcEEEEEeeCCCCCcccccccccccCcceEEEeCCC-CCCCCCCCCCCCCC
Q psy16971 74 AALVNGYSIVTYQRPLRSHDILDHDIYTNQSQAIIWAIGPLNSKQEVSFHSVFPKKNILFNFGRT-PYWNCPIPEGETGT 152 (383)
Q Consensus 74 g~r~nGvT~V~FrRpL~T~D~~D~~I~~~~t~~VIWA~G~ln~~~e~s~H~~~~~g~~~I~fg~~-~~~~C~~~~~~~~~ 152 (383)
++|..++..+ +|+-.-+.|..+.....+.+||++|- +|..+...++.+.+... +...|....++..
T Consensus 287 ~~qi~~~~~v----~l~d~~~r~n~v~~~~~~~~i~nl~~--------~~~~~~~~~v~~~~~~~e~~~~~~~n~~~~~- 353 (512)
T KOG4731|consen 287 GSQIDGVSQV----PLNDDNKRDNPVNSTESLTVIWNLGV--------IKPPPYYLPVNHGGVESENFGHFSLNLSDHV- 353 (512)
T ss_pred cccccchhee----eccCcccccccceecCCceeeeccCc--------ccCCCcccccccCCceecccceeEEEccccc-
Confidence 9999998877 66653345666655677788888763 34333334444433332 2334422111100
Q ss_pred CCCCCCCCCCcCcccchheecceeEEeeecccCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCceeEEEeCCCCccCCCC
Q psy16971 153 PNHGEYSDESSGANTKVQEVLGYWVIVSVAVEPARSKSPPTPAPAPRDEAWEIPPIQCNEPDDGVLYAQMGPTGGKRGYP 232 (383)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~t~~p~~~~~~w~~~~i~~~~~~~~~f~a~~gp~gg~rgy~ 232 (383)
+. -..+|+++-+. +-+++.|-|.++|.++.|+|.
T Consensus 354 -------------------------------~~-------------~~p~l~~~~~~--d~dv~~~~a~l~~~~~~r~~~ 387 (512)
T KOG4731|consen 354 -------------------------------DE-------------CLPPLDADNKY--DQDVIIADAHLPLVVTARPSV 387 (512)
T ss_pred -------------------------------cc-------------cCCcccccccc--CcceeeeccccCccccccccc
Confidence 00 12347777654 445789999999999999999
Q ss_pred CccCCCCccEEEEEcCeecceEEEEeCCeEEEEEEcCCCCCCCCCcCCeEEecCCCCCccCCChhhhcceEEEeCcccCC
Q psy16971 233 AITGHVGWGISWYINGLLIPEINVVRGKTYTFIVEGGLDPNTPAKYHPFYITDDSVGGYQHKTPEEKEKVRIFAGAKRDK 312 (383)
Q Consensus 233 ~iTg~~~~g~awyiN~~l~Pel~v~RG~tYtF~VegG~dp~~~~~yHP~yItd~~~GG~~~~~~~~~~~~~v~aG~~~~~ 312 (383)
..+|+++.+.+||||++++|+|+|+||+||+|.|+||+|+|++++||++-|++++.++++++.+.-|+.++|++++++.+
T Consensus 388 h~pn~~~s~~~~yin~~~~p~l~~~rg~ty~f~~~~g~dvhs~~~~~~l~~~~~l~~~~~~~~~~gq~~~~Vl~~pe~~~ 467 (512)
T KOG4731|consen 388 HYPNPPNSSKVLYINKKEAPVLKVERGVTYKFSIEAGHDVHSYITSDFLGGNASLRNRTETIYAGGQETHGVLSSPEELV 467 (512)
T ss_pred cCCCCCCCCcceeeeeccChhhhhccCCcEEEeccCCCCcccccccCcccCccccccCccccccCCcceEEEecChHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccccC--CCCCCCCCCcccchhhhccceeeeec
Q psy16971 313 FGNVVPTGVGRLCNWT--PDPEQPPADEFVSFGAYQRTLSLICD 354 (383)
Q Consensus 313 ~g~~~pt~~gr~c~w~--~~~~~~~~d~~~sF~~y~rtL~l~C~ 354 (383)
++.++||+.+.||.-. .+..++..+.+.||.++.+.++-.|+
T Consensus 468 ~~~~~pt~~~~~~~s~~~~~~~~kv~~~~~tl~~~~~~~vt~~~ 511 (512)
T KOG4731|consen 468 WAPNRPTPDQLYYHSIFQEKMGWKVQVVDGTLSDMYNNSVTLDD 511 (512)
T ss_pred cCCCCCCcccchhhhhhhhhhCceeccccchHHHHHhhheeeec
Confidence 9999999999999744 55667778899999999999999886
No 2
>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins. A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).
Probab=99.84 E-value=2.7e-20 Score=162.03 Aligned_cols=118 Identities=30% Similarity=0.476 Sum_probs=100.1
Q ss_pred CcEEEEeecCCCCCCCCccccEEEEEEeCCCCceEEEEeeeeCCCcccCCCCCCCCccccCCccceEEE-eeEEECCEEE
Q psy16971 4 GEYMSFGLSGDPLRNQMIGADVVVAWIDQETLNGYAVDYYLTDKSQCAGGRGSCPDYRIQDNTESVRLL-NAALVNGYSI 82 (383)
Q Consensus 4 ~~YmAFG~S~~~~~~~M~GADVVVa~vD~~~G~~~a~Dyyit~~s~C~~~~GvcPDt~~gdgtnDi~Lv-sg~r~nGvT~ 82 (383)
++|||||||.+ .+|.++|+||+|++++ |++++.|||+++++.| -+|+ ++|+.+. ++.+++|+++
T Consensus 27 ~gwvaiGfs~~---~~M~~~d~vv~~~~~~-g~~~v~d~~~~~~~~~------~~d~-----~~~~~~~~~~~~~~g~~~ 91 (148)
T smart00664 27 NGWVAIGFSPD---GQMAGADVVVAWVDNN-GRVTVKDYYTPGYGPP------VEDD-----QQDVTDLLSATYENGVLT 91 (148)
T ss_pred CCEEEEEECCC---CCcCCCCEEEEEEcCC-CCEEEEEEEcCCCCCC------CcCc-----ccccccceeEEEECCEEE
Confidence 89999999986 6999999999999875 8999999999999764 1453 3444433 9999999999
Q ss_pred EEEEccCCCCCCCCccccCCCcEEEEEeeCCCCCcccccccccccCcceEEEeCC
Q psy16971 83 VTYQRPLRSHDILDHDIYTNQSQAIIWAIGPLNSKQEVSFHSVFPKKNILFNFGR 137 (383)
Q Consensus 83 V~FrRpL~T~D~~D~~I~~~~t~~VIWA~G~ln~~~e~s~H~~~~~g~~~I~fg~ 137 (383)
++|+|+|.++|+.|..+. ++++++|||+|++...+++.+|....++...|+|.+
T Consensus 92 ~~f~R~l~t~d~~d~~~~-~~~~~~i~a~G~~~~~~~~~~H~~~~~~~~~i~~~~ 145 (148)
T smart00664 92 CRFRRKLGSNDPDDKSLL-DGTVHVLWAKGPLSPNGGLGYHDFSLKSTKKVCLSS 145 (148)
T ss_pred EEEEEEccCCCccccccC-CCeEEEEEEECCCCCCCCeeeccccccCceEEEecc
Confidence 999999999999998775 789999999998666677899998767778888865
No 3
>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals. It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].
Probab=99.80 E-value=4.3e-19 Score=149.25 Aligned_cols=95 Identities=33% Similarity=0.614 Sum_probs=85.1
Q ss_pred CcEEEEeecCCCCCCCCccccEEEEEEeCCCCceEEEEee-eeCCCcccCCCCCCCCccccCCccceEEEeeEEECCEEE
Q psy16971 4 GEYMSFGLSGDPLRNQMIGADVVVAWIDQETLNGYAVDYY-LTDKSQCAGGRGSCPDYRIQDNTESVRLLNAALVNGYSI 82 (383)
Q Consensus 4 ~~YmAFG~S~~~~~~~M~GADVVVa~vD~~~G~~~a~Dyy-it~~s~C~~~~GvcPDt~~gdgtnDi~Lvsg~r~nGvT~ 82 (383)
.+|||||||.. ..|.++||||+|+++ |++++.|+| +.+++ .++.|+. +++++.++++.+++|.++
T Consensus 29 ~~w~aiGfs~~---~~M~~~Dvv~~~~~~--~~~~v~d~~~~~~~~------~p~~d~~---~~~~~~~~~~~~~~g~~~ 94 (124)
T PF03351_consen 29 NGWVAIGFSDD---GGMGGSDVVVCWVDD--GKVYVQDYYSTGGYG------PPTVDDQ---GSQDIQLLSGSYSNGTTT 94 (124)
T ss_pred CCEEEEEEccc---cCCCCCcEEEEEEcC--CceeEEEeeccCccc------ceeeccc---cCCcEEEEEEEEECCEEE
Confidence 79999999985 579999999999984 899999999 66664 3556632 579999999999999999
Q ss_pred EEEEccCCCCCCCCccccCCCcEEEEEeeC
Q psy16971 83 VTYQRPLRSHDILDHDIYTNQSQAIIWAIG 112 (383)
Q Consensus 83 V~FrRpL~T~D~~D~~I~~~~t~~VIWA~G 112 (383)
++|+|||.++|++|..|..+.+++||||+|
T Consensus 95 ~~F~R~l~t~d~~d~~l~~~~~~~~i~A~G 124 (124)
T PF03351_consen 95 CSFTRPLNTGDSQDYDLDSNGTYYVIWAYG 124 (124)
T ss_pred EEEEEEccCCCCCccEecCCCcEEEEEEeC
Confidence 999999999999999998899999999998
No 4
>KOG3568|consensus
Probab=99.48 E-value=3.5e-14 Score=145.50 Aligned_cols=113 Identities=22% Similarity=0.316 Sum_probs=92.7
Q ss_pred CCcEEEEeecCCCCCCCCccccEEEEEEeCCCCceEEEEeeeeCCCcccCCCCCCCCccccCCccceEEEeeEEECCEEE
Q psy16971 3 FGEYMSFGLSGDPLRNQMIGADVVVAWIDQETLNGYAVDYYLTDKSQCAGGRGSCPDYRIQDNTESVRLLNAALVNGYSI 82 (383)
Q Consensus 3 e~~YmAFG~S~~~~~~~M~GADVVVa~vD~~~G~~~a~Dyyit~~s~C~~~~GvcPDt~~gdgtnDi~Lvsg~r~nGvT~ 82 (383)
..+|+.||||+. +.|.+|||||+|.++ +..|+.|+|.+...|- . .|.+||++|+...++...++
T Consensus 66 t~~~v~fGfSdr---G~lanaDivv~~n~g--~~~~~~DayTn~d~qi------~-----~D~QQDyqll~~~e~~~~~~ 129 (603)
T KOG3568|consen 66 TAGYVGFGFSDR---GALANADIVVGGNAG--GRPYLQDAYTNADGQI------K-----KDAQQDYQLLYAMENSTHTI 129 (603)
T ss_pred cCCEEEEecCCc---CCcccCcEEEEeccC--CchhhhhhhcCCCCce------e-----cchhhhhHHHhhhccCCccE
Confidence 468999999976 589999999999974 7899999999988652 2 25899999999999999999
Q ss_pred EEEEccCCCCCCCCccccCCCcEEEEEeeCCCCCccc-ccccccccCcceEE
Q psy16971 83 VTYQRPLRSHDILDHDIYTNQSQAIIWAIGPLNSKQE-VSFHSVFPKKNILF 133 (383)
Q Consensus 83 V~FrRpL~T~D~~D~~I~~~~t~~VIWA~G~ln~~~e-~s~H~~~~~g~~~I 133 (383)
|.|||||.|||+.|+.|. +++|+||||+-..+.+.. .-+|+. +++..+.
T Consensus 130 i~frRkl~TCDp~Dy~i~-dgTv~vv~a~~eed~r~l~~v~~~~-~~~v~~~ 179 (603)
T KOG3568|consen 130 IEFRRKLHTCDPNDYSIT-DGTVRVVWAYLEEDARELGPVYHDS-NRGVKSL 179 (603)
T ss_pred EEEecccCcCCccceecc-CCeEEEEEEEeccchhhcccccccc-ccceeee
Confidence 999999999999999997 899999999876654432 345543 4444433
No 5
>KOG4731|consensus
Probab=98.13 E-value=3.5e-06 Score=87.08 Aligned_cols=103 Identities=8% Similarity=-0.094 Sum_probs=84.4
Q ss_pred ceeEEEeCCCCccCCCCCccCCCCccEEEEEcCeecceEEEEeCCeEEEEEEcCCCCCCCCCcCCeEEecCCCCCccCCC
Q psy16971 216 GVLYAQMGPTGGKRGYPAITGHVGWGISWYINGLLIPEINVVRGKTYTFIVEGGLDPNTPAKYHPFYITDDSVGGYQHKT 295 (383)
Q Consensus 216 ~~f~a~~gp~gg~rgy~~iTg~~~~g~awyiN~~l~Pel~v~RG~tYtF~VegG~dp~~~~~yHP~yItd~~~GG~~~~~ 295 (383)
.+|+++.+-.--..+..+| +|+ ||.|..++|.++.||-.+|.|.+++|.|...|..|.|.||-+|-.+|.++|+
T Consensus 305 ~n~v~~~~~~~~i~nl~~~--~~~----~~~~~v~~~~~~~e~~~~~~~n~~~~~~~~~p~l~~~~~~d~dv~~~~a~l~ 378 (512)
T KOG4731|consen 305 DNPVNSTESLTVIWNLGVI--KPP----PYYLPVNHGGVESENFGHFSLNLSDHVDECLPPLDADNKYDQDVIIADAHLP 378 (512)
T ss_pred cccceecCCceeeeccCcc--cCC----CcccccccCCceecccceeEEEccccccccCCccccccccCcceeeeccccC
Confidence 4667777666666666665 443 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcceEEEeCcccCCCCcccccccccccccCCCC
Q psy16971 296 PEEKEKVRIFAGAKRDKFGNVVPTGVGRLCNWTPDP 331 (383)
Q Consensus 296 ~~~~~~~~v~aG~~~~~~g~~~pt~~gr~c~w~~~~ 331 (383)
..+..+..|..-. +.....+.||+|++.+
T Consensus 379 ~~~~~r~~~h~pn-------~~~s~~~~yin~~~~p 407 (512)
T KOG4731|consen 379 LVVTARPSVHYPN-------PPNSSKVLYINKKEAP 407 (512)
T ss_pred ccccccccccCCC-------CCCCCcceeeeeccCh
Confidence 8877654443222 3456678999999876
No 6
>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose. It is a hemoflavoenzyme that is comprised of a b-type cytochrome domain linked to a large flavodehydrogenase domain. The 2 domains can be separated proteolytically. The cytochrome domain folds as a beta sandwich and complexes a heme molecule.
Probab=96.79 E-value=0.021 Score=53.37 Aligned_cols=115 Identities=14% Similarity=0.179 Sum_probs=78.6
Q ss_pred CCcEEEEeecCCCCCCCCccccEEEEEEeCCCCceEEEEeeeeCCCcccCCCCCCCCccccCCccceEEEeeE-EECCEE
Q psy16971 3 FGEYMSFGLSGDPLRNQMIGADVVVAWIDQETLNGYAVDYYLTDKSQCAGGRGSCPDYRIQDNTESVRLLNAA-LVNGYS 81 (383)
Q Consensus 3 e~~YmAFG~S~~~~~~~M~GADVVVa~vD~~~G~~~a~Dyyit~~s~C~~~~GvcPDt~~gdgtnDi~Lvsg~-r~nGvT 81 (383)
.-+|+|||+.+ +|.++-+.|+|-++ .+..+.=|+.+++.++ + .+. +.-.+.++.++ -.+++-
T Consensus 51 ~~gW~gls~Gg-----~M~~~~L~vaw~~g--~~Vt~S~R~atg~~~P--------~-~y~-g~a~~t~L~gs~vn~t~~ 113 (184)
T cd00241 51 ASGWIGLALGG-----AMTNSLLLVAWPNG--NQIVSSTRYATGYTLP--------D-AYT-GPATITQLPSSSVNSTHW 113 (184)
T ss_pred CCCeEEEeecc-----cCCCCeEEEEEcCC--CeEEEeEEEecCccCC--------C-ccC-CCceEEECCCCcEeCCEE
Confidence 36899999974 79999999999976 4689999999999763 2 222 33367777544 556688
Q ss_pred EEEEEccCCCCCCC--CccccCCCcEEEEEeeC---CCCCc---ccccccccccCcceEEEeCCC
Q psy16971 82 IVTYQRPLRSHDIL--DHDIYTNQSQAIIWAIG---PLNSK---QEVSFHSVFPKKNILFNFGRT 138 (383)
Q Consensus 82 ~V~FrRpL~T~D~~--D~~I~~~~t~~VIWA~G---~ln~~---~e~s~H~~~~~g~~~I~fg~~ 138 (383)
+++||=. .|-.. +-.+.....-.++||++ +.++. ..+.+|. ..|...++|...
T Consensus 114 t~~~rC~--nC~~W~~gg~~~~t~~~~~~wA~~~~~~~~p~~~~a~i~~Hd--~~G~f~~dl~~A 174 (184)
T cd00241 114 KLVFRCQ--NCTSWNNGGGIDPTSQGVLAWAFSNVAVDDPSDPQSTFSEHT--DFGFFGINLSDA 174 (184)
T ss_pred EEEEEeC--CCcccCCCCccCcCCCceEEEEECCCCCCCCCCcccCCceec--CCcceeEechhc
Confidence 8888865 44432 22344344448999995 33322 2367886 468888888654
No 7
>PF09459 EB_dh: Ethylbenzene dehydrogenase; InterPro: IPR019020 This entry represents a haem-binding domain found in cytochromes b558/566 (subunit A), c-551 and c-552, as well as in members of the type-II members of the microbial dimethyl sulphoxide (DMSO) reductase family. The DMSO reductase family is a large and rapidly expanding group of enzymes found in bacteria and archaea that share a common form of molybdenum cofactor known as bis(molybdopterin guanine dinucleotide)Mo []. In addition to the molybdopterin subunit, these enzymes also contain an iron-sulphur subunit. These include two distinct but very closely related periplasmic proteins of anaerobic respiration: selenate reductase and chlorate reductase []. Other proteins containing this subunit include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase [, , ]. One member of the DMSO reductase family is eythylbenzene dehydrogenase, which is a heterotrimer of three subunits that catalyses the anaerobic degradation of hydrocarbons (alpha, beta and gamma subunits). This entry matches the gamma subunit, whose structure is known []. The alpha subunit contains the catalytic centre as a Molybdenum cofactor-complex. This removes an electron-pair from the hydrocarbon and passes it along an electron transport system involving iron-sulphur complexes held in the beta subunit and a Haem b molecule contained in the gamma subunit. The electron-pair is then subsequently passed to an as yet unknown receiver. The enzyme is found in a variety of different bacteria.; GO: 0020037 heme binding; PDB: 2IVF_C.
Probab=88.79 E-value=0.65 Score=45.29 Aligned_cols=40 Identities=23% Similarity=0.389 Sum_probs=25.9
Q ss_pred eeEEECCEEEEEEEccCCCCC--CCCccccCCCcEEEEEeeC
Q psy16971 73 NAALVNGYSIVTYQRPLRSHD--ILDHDIYTNQSQAIIWAIG 112 (383)
Q Consensus 73 sg~r~nGvT~V~FrRpL~T~D--~~D~~I~~~~t~~VIWA~G 112 (383)
.+..+||.-+|+|+|||+|.+ ++|..|....++.|-.|+-
T Consensus 208 ~~~~~dG~Wtv~~~R~L~t~~~~~~d~~~~~g~~~~~~fAvw 249 (261)
T PF09459_consen 208 GGKWKDGYWTVEFSRPLDTGDPSPYDVQFEPGKTYYVAFAVW 249 (261)
T ss_dssp EEEEETTEEEEEEEEES---T-T--S----TTEEEEEEEEEE
T ss_pred eeEECCCEEEEEEEEECCCCCCcccceeecCCCEEEEEEEEE
Confidence 467799999999999999995 5799999777788877874
No 8
>TIGR03477 DMSO_red_II_gam DMSO reductase family type II enzyme, heme b subunit. This model represents a heme b-binding subunit, typically called the gamma subunit, of various proteins that also contain a molybdopterin subunit and an iron-sulfur protein. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=78.56 E-value=4.2 Score=38.91 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=35.3
Q ss_pred eeEEECCEEEEEEEccCCCCCCCCccccCCCcEEEEEeeC
Q psy16971 73 NAALVNGYSIVTYQRPLRSHDILDHDIYTNQSQAIIWAIG 112 (383)
Q Consensus 73 sg~r~nGvT~V~FrRpL~T~D~~D~~I~~~~t~~VIWA~G 112 (383)
.+...||.-+|.|+|||++....+..|..++.+.|-+|+-
T Consensus 144 ~a~~~~~~WtVv~~RpL~~~~~~~~~l~~g~~~~vaFAVW 183 (205)
T TIGR03477 144 VATYDNGEWTVVLSRPLASKGEGLASLQAGGDSKVAFAVW 183 (205)
T ss_pred eEEEcCCEEEEEEEEECCCCCcccceeccCCeEEEEEEEE
Confidence 5777899999999999999888888888889999999984
No 9
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=65.64 E-value=33 Score=28.27 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=30.4
Q ss_pred eEEEeCCCCccCCCCCccCCCCccEEEEEcCeecceEEEEeCCeEEEEEEcCCCCCCCCCcCCeEEec
Q psy16971 218 LYAQMGPTGGKRGYPAITGHVGWGISWYINGLLIPEINVVRGKTYTFIVEGGLDPNTPAKYHPFYITD 285 (383)
Q Consensus 218 f~a~~gp~gg~rgy~~iTg~~~~g~awyiN~~l~Pel~v~RG~tYtF~VegG~dp~~~~~yHP~yItd 285 (383)
++.+||...|.--|.. .+|.|+.|.+++|.- .+. .-|-+++.+
T Consensus 1 ~~v~~g~~~g~~~F~P------------------~~i~v~~G~~V~~~N-~~~------~~H~~~~~~ 43 (99)
T TIGR02656 1 VTVKMGADKGALVFEP------------------AKISIAAGDTVEWVN-NKG------GPHNVVFDE 43 (99)
T ss_pred CEEEEecCCCceeEeC------------------CEEEECCCCEEEEEE-CCC------CCceEEECC
Confidence 4677887677666664 589999999999983 222 237777754
No 10
>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein.
Probab=65.04 E-value=89 Score=26.75 Aligned_cols=88 Identities=20% Similarity=0.216 Sum_probs=59.8
Q ss_pred CccccEEEEEEeCCCCceEEEEeeeeCCCc-ccCCCCCCCCccccCCccceEEEeeEEECCEEEEEEEccCCCCCCCCcc
Q psy16971 20 MIGADVVVAWIDQETLNGYAVDYYLTDKSQ-CAGGRGSCPDYRIQDNTESVRLLNAALVNGYSIVTYQRPLRSHDILDHD 98 (383)
Q Consensus 20 M~GADVVVa~vD~~~G~~~a~Dyyit~~s~-C~~~~GvcPDt~~gdgtnDi~Lvsg~r~nGvT~V~FrRpL~T~D~~D~~ 98 (383)
|+|+-+.||+=+..+|...+.-|.|+++.. + -|- .=.=++..+++...+|.-+|-=+=+|.
T Consensus 1 M~GtqALvAf~~~~~G~~~v~T~~i~sy~~~l------~~~----~lsf~v~~lsae~~~~~~~IfAtl~Lp-------- 62 (101)
T PF04526_consen 1 MVGTQALVAFKNSNGGSVTVYTYNITSYSPSL------QPG----PLSFDVSDLSAEYSGGEMTIFATLKLP-------- 62 (101)
T ss_pred CCCceEEEEEeCCCCceEEEEEEeeccccccc------ccc----cccccccceEeEEeCCEEEEEEEEEcC--------
Confidence 999999999998876788888889999874 2 111 013345566777777744333232332
Q ss_pred ccCCCcEEEEEeeCCCCCcccccccccc
Q psy16971 99 IYTNQSQAIIWAIGPLNSKQEVSFHSVF 126 (383)
Q Consensus 99 I~~~~t~~VIWA~G~ln~~~e~s~H~~~ 126 (383)
.....+.-||-.|+.-....+..|+..
T Consensus 63 -~n~t~vnhVWQ~G~~v~gg~p~~H~~~ 89 (101)
T PF04526_consen 63 -GNSTSVNHVWQVGPSVQGGSPQPHPTS 89 (101)
T ss_pred -CCCcEEEEEeCcCCccCCCccccCCCC
Confidence 113578899999998766678899864
No 11
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=57.55 E-value=20 Score=28.27 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=15.9
Q ss_pred ccCCCCccEEEEEcCeecc
Q psy16971 234 ITGHVGWGISWYINGLLIP 252 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~P 252 (383)
.+|.|.+.+.|+.||..+.
T Consensus 24 ~~G~P~p~v~W~~~g~~~~ 42 (90)
T cd04972 24 AEGSPLPKVEWIIAGLIVI 42 (90)
T ss_pred EEEcCCCeEEEEECCEEcc
Confidence 3488999999999998753
No 12
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=51.10 E-value=7.6 Score=39.43 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=24.4
Q ss_pred CCCcEEEEeecCCCC-CCCCccccEEEEEEe
Q psy16971 2 EFGEYMSFGLSGDPL-RNQMIGADVVVAWID 31 (383)
Q Consensus 2 ~e~~YmAFG~S~~~~-~~~M~GADVVVa~vD 31 (383)
..+-|+|+|+||... ..+|.+|+++||--.
T Consensus 251 ~P~LYIA~GISGAiQHlaGm~~Sk~IVAINk 281 (313)
T COG2025 251 APKLYIALGISGAIQHLAGMKDSKVIVAINK 281 (313)
T ss_pred cccEEEEEecccHHHHHhhcccCcEEEEEcC
Confidence 457799999999754 489999999999643
No 13
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=50.25 E-value=11 Score=30.30 Aligned_cols=20 Identities=20% Similarity=0.612 Sum_probs=17.8
Q ss_pred ccCCCCccEEEEEcCeecce
Q psy16971 234 ITGHVGWGISWYINGLLIPE 253 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~Pe 253 (383)
++|.|-+.|.||-||+++++
T Consensus 7 v~G~P~Pti~W~kng~~l~~ 26 (79)
T cd05855 7 VKGNPKPTLQWFHEGAILNE 26 (79)
T ss_pred EeEeCCCceEEEECCEECCC
Confidence 57999999999999998864
No 14
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=48.90 E-value=15 Score=28.47 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=16.9
Q ss_pred ccCCCCccEEEEEcCeecc
Q psy16971 234 ITGHVGWGISWYINGLLIP 252 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~P 252 (383)
++|.|.+.+.||-||+.|.
T Consensus 7 v~g~P~P~v~W~kdg~~l~ 25 (67)
T cd05863 7 VAAYPPPEFQWYKDGKLIS 25 (67)
T ss_pred EEEeCCCEEEEEECCEECc
Confidence 5688999999999999885
No 15
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=48.75 E-value=20 Score=27.56 Aligned_cols=39 Identities=23% Similarity=0.546 Sum_probs=28.4
Q ss_pred ccCCCCccEEEEEcCeecceEEEEeCCeEEEEEEcCCCCCCCCCcCCeEEec
Q psy16971 234 ITGHVGWGISWYINGLLIPEINVVRGKTYTFIVEGGLDPNTPAKYHPFYITD 285 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~Pel~v~RG~tYtF~VegG~dp~~~~~yHP~yItd 285 (383)
++|.|...+.|+.||..+.+ +..|.+...++ .+=|.|.+
T Consensus 24 ~~~~p~~~v~W~~~~~~l~~-----~~~~~~~~~~~--------~~~L~I~~ 62 (90)
T PF07679_consen 24 VSGNPPPTVTWYKNGRPLTS-----SQRYQIESDGG--------SSSLTIKN 62 (90)
T ss_dssp EEESSSSEEEEEETTEEEES-----SSSEEEEEETT--------EEEEEESS
T ss_pred EEeCCCCcccccccccceee-----eeeeeeecccc--------eeEEccCC
Confidence 35667789999999998765 77777777763 35666654
No 16
>TIGR03154 sulfolob_CbsA cytochrome b558/566, subunit A. Members of this protein family are CbsA, one subunit of a highly glycosylated, heterodimeric, mono-heme cytochrome b558/566, found in Sulfolobus acidocaldarius and several other members of the Sulfolobales, a branch of the Crenarchaeota.
Probab=48.53 E-value=63 Score=33.80 Aligned_cols=82 Identities=24% Similarity=0.376 Sum_probs=51.7
Q ss_pred EEeCCCCceEEEEeeeeCCCc----ccC--CCCCCCCccccCCcc-ce--EEEeeEEECCEEEEEEEccCCCCC---CCC
Q psy16971 29 WIDQETLNGYAVDYYLTDKSQ----CAG--GRGSCPDYRIQDNTE-SV--RLLNAALVNGYSIVTYQRPLRSHD---ILD 96 (383)
Q Consensus 29 ~vD~~~G~~~a~Dyyit~~s~----C~~--~~GvcPDt~~gdgtn-Di--~Lvsg~r~nGvT~V~FrRpL~T~D---~~D 96 (383)
++|.. ..+|+.+.|...... |.+ +..|. - .|.| .+ .--.+..+||+-+|+|.|||...- +.=
T Consensus 301 y~dp~-nhgfavplytnntnmyevd~~giwytpv~-s----~glngslffi~TgAtY~nG~WTVefaRPL~vp~~y~~~m 374 (465)
T TIGR03154 301 YVDPG-NHGFAVPLYTNNTNMYEVDTAGIWYTPVA-S----EGLNGSLFFIWTGATYENGYWTVEFARPLAVPLDYAPWM 374 (465)
T ss_pred eecCC-CCceEeeeEecCCCceeeccCceeccccc-c----CCCCCceEEEEeccEEeCCeEEEEEEeccCCCccccccc
Confidence 45553 567888888665432 322 12221 1 1222 22 223478899999999999999765 344
Q ss_pred ccccCCCcEEEEEee--CCCCC
Q psy16971 97 HDIYTNQSQAIIWAI--GPLNS 116 (383)
Q Consensus 97 ~~I~~~~t~~VIWA~--G~ln~ 116 (383)
-.|..+...+|-+|. |.+..
T Consensus 375 pnitvg~tyyVAFAVWqGs~GE 396 (465)
T TIGR03154 375 PNITVGKTYYVAFAVWQGKLGE 396 (465)
T ss_pred cccccCCeEEEEEEEEcCcccc
Confidence 557778889999988 76543
No 17
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=47.24 E-value=8.2 Score=39.05 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=23.7
Q ss_pred CCCcEEEEeecCCCC-CCCCccccEEEEEE
Q psy16971 2 EFGEYMSFGLSGDPL-RNQMIGADVVVAWI 30 (383)
Q Consensus 2 ~e~~YmAFG~S~~~~-~~~M~GADVVVa~v 30 (383)
..+-|+|+|+||.-. ..+|.+|+++|+=-
T Consensus 252 ~P~lYiA~GISGaiQH~~Gm~~s~~IVAIN 281 (313)
T PRK03363 252 KPELYLAVGISGQIQHMVGANASQTIFAIN 281 (313)
T ss_pred CccEEEEEccccHHHHHhhcccCCEEEEEc
Confidence 457799999998743 47899999999864
No 18
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=46.58 E-value=23 Score=27.44 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=17.3
Q ss_pred ccCCCCccEEEEEcCeecce
Q psy16971 234 ITGHVGWGISWYINGLLIPE 253 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~Pe 253 (383)
++|.|.+.+.||-||+.+..
T Consensus 7 v~G~P~P~v~W~k~g~~l~~ 26 (70)
T cd05864 7 YYGYPPPEVKWYKNGQLIVL 26 (70)
T ss_pred EEEeCCCEEEEEECCEECCC
Confidence 46899999999999998853
No 19
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=45.24 E-value=15 Score=28.05 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=16.6
Q ss_pred ccCCCCccEEEEEcCeecce
Q psy16971 234 ITGHVGWGISWYINGLLIPE 253 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~Pe 253 (383)
++|.|.+.+.||.||.++.+
T Consensus 10 ~~G~P~p~i~W~k~g~~i~~ 29 (76)
T cd05867 10 VEGIPTPNITWSINGAPIEG 29 (76)
T ss_pred eeEeCCCeEEEEECCEECCC
Confidence 35788899999999998754
No 20
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=44.96 E-value=10 Score=39.11 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=23.7
Q ss_pred CCCcEEEEeecCCCC-CCCCccccEEEEEE
Q psy16971 2 EFGEYMSFGLSGDPL-RNQMIGADVVVAWI 30 (383)
Q Consensus 2 ~e~~YmAFG~S~~~~-~~~M~GADVVVa~v 30 (383)
..+-|+|||+||.-. ..+|.+|+++|+=-
T Consensus 293 ~P~lYIA~GISGAiQH~~Gm~~s~~IVAIN 322 (356)
T PLN00022 293 APELYIAVGISGAIQHLAGMKDSKVIVAIN 322 (356)
T ss_pred CCcEEEEEecchHHHHHhhcccCCEEEEEC
Confidence 457799999998743 47899999999854
No 21
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=41.88 E-value=34 Score=30.34 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=32.4
Q ss_pred eecceEEEEeCCeEEEE-EEcCCCCCCCCCcCCeEE-------ecCCCCCccCCChhhhcceEEEeCccc
Q psy16971 249 LLIPEINVVRGKTYTFI-VEGGLDPNTPAKYHPFYI-------TDDSVGGYQHKTPEEKEKVRIFAGAKR 310 (383)
Q Consensus 249 ~l~Pel~v~RG~tYtF~-VegG~dp~~~~~yHP~yI-------td~~~GG~~~~~~~~~~~~~v~aG~~~ 310 (383)
...|.|.|+.|++|.|+ |.+|.. .+|.|-| ... .|.+-+ +.+...+.|..|-.+
T Consensus 57 ~~~~~~~v~~g~~~rlRliNa~~~-----~~~~~~i~gh~~~Via~-DG~~v~--p~~~~~l~l~~G~R~ 118 (159)
T PF00394_consen 57 GEPPVIKVKPGERYRLRLINAGAS-----TSFNFSIDGHPMTVIAA-DGVPVE--PYKVDTLVLAPGQRY 118 (159)
T ss_dssp STSGEEEEETTTEEEEEEEEESSS------BEEEEETTBCEEEEEE-TTEEEE--EEEESBEEE-TTEEE
T ss_pred cccceEEEcCCcEEEEEEEeccCC-----eeEEEEeeccceeEeee-cccccc--ccccceEEeeCCeEE
Confidence 56799999999999994 455553 2444444 222 355544 445555666555554
No 22
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=41.38 E-value=12 Score=37.88 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=23.6
Q ss_pred CCCcEEEEeecCCCC-CCCCccccEEEEEE
Q psy16971 2 EFGEYMSFGLSGDPL-RNQMIGADVVVAWI 30 (383)
Q Consensus 2 ~e~~YmAFG~S~~~~-~~~M~GADVVVa~v 30 (383)
..+-|+|+|+||.-. ..+|.+|++||+=-
T Consensus 251 ~P~lYiA~GISGAiQH~aGm~~s~~IVAIN 280 (312)
T PRK11916 251 KSDLYLTLGISGQIQHMVGGNGAKVIVAIN 280 (312)
T ss_pred CccEEEEeccccHHHHHhhcccCCEEEEEC
Confidence 456799999998743 37899999999854
No 23
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=38.80 E-value=24 Score=26.39 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=15.3
Q ss_pred cCCCCccEEEEEcCeecc
Q psy16971 235 TGHVGWGISWYINGLLIP 252 (383)
Q Consensus 235 Tg~~~~g~awyiN~~l~P 252 (383)
+|.|.+-|.|+.||.++.
T Consensus 11 ~g~P~p~i~W~~~g~~~~ 28 (76)
T cd04978 11 EGIPQPTITWRLNGVPIE 28 (76)
T ss_pred eeeCCCEEEEEECCEECC
Confidence 477888899999999875
No 24
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=38.76 E-value=21 Score=28.24 Aligned_cols=19 Identities=26% Similarity=0.679 Sum_probs=16.5
Q ss_pred ccCCCCccEEEEEcCeecc
Q psy16971 234 ITGHVGWGISWYINGLLIP 252 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~P 252 (383)
++|.|.+.+.||-||++|.
T Consensus 7 v~G~P~P~v~W~k~g~~i~ 25 (81)
T cd04971 7 VRGNPKPTLTWYHNGAVLN 25 (81)
T ss_pred eEeeCCCcEEEEECCEECc
Confidence 4689999999999999873
No 25
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=38.74 E-value=1.2e+02 Score=24.79 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=22.0
Q ss_pred ceEEEEeCCeEEEEEEcCCCCCCCCCcCCeEEec
Q psy16971 252 PEINVVRGKTYTFIVEGGLDPNTPAKYHPFYITD 285 (383)
Q Consensus 252 Pel~v~RG~tYtF~VegG~dp~~~~~yHP~yItd 285 (383)
++|.|+.|.|++|...++ .-|-+.+.+
T Consensus 17 ~~i~V~~G~tV~~~n~~~-------~~Hnv~~~~ 43 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDS-------MPHNVVFVA 43 (99)
T ss_dssp SEEEEETTEEEEEEEESS-------SSBEEEEET
T ss_pred CEEEECCCCEEEEEECCC-------CCceEEEec
Confidence 699999999999998732 348888877
No 26
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=38.49 E-value=54 Score=25.96 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.3
Q ss_pred ccCCCCccEEEEEcCeec
Q psy16971 234 ITGHVGWGISWYINGLLI 251 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~ 251 (383)
++|.|.+.+.||-||..+
T Consensus 25 v~G~P~p~v~W~k~g~~l 42 (92)
T cd05737 25 VFGDPDPEVSWLKNDQAL 42 (92)
T ss_pred EEecCCCeEEEEECCEEC
Confidence 357888999999999875
No 27
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....
Probab=37.48 E-value=5.9 Score=36.76 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=28.9
Q ss_pred CCCCcEEEEeecCCCCCCCCccccEEEEEEeCCCCceEE
Q psy16971 1 MEFGEYMSFGLSGDPLRNQMIGADVVVAWIDQETLNGYA 39 (383)
Q Consensus 1 ~~e~~YmAFG~S~~~~~~~M~GADVVVa~vD~~~G~~~a 39 (383)
++++||+.||+|.+..+..+..|++||+-|+.+ .++.
T Consensus 135 ~De~Gy~slG~s~~~~~~~ie~A~~vI~eVN~~--~P~~ 171 (198)
T PF02550_consen 135 MDEHGYFSLGTSVDYTKAAIEQAKKVIVEVNPN--MPRT 171 (198)
T ss_dssp E-TTSEEECTTBHBTHHHHHHHTSEEEEEEETT--STS-
T ss_pred cCCCCCEeecHHHHhHHHHHhcCCeEEEEcCCC--CCCC
Confidence 479999999998766567788899999999874 5544
No 28
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=36.27 E-value=60 Score=29.23 Aligned_cols=39 Identities=31% Similarity=0.326 Sum_probs=31.5
Q ss_pred EEEEcCeecceEEEEeCCeEEEEEEcCCCCCCCCCcCCeEEec
Q psy16971 243 SWYINGLLIPEINVVRGKTYTFIVEGGLDPNTPAKYHPFYITD 285 (383)
Q Consensus 243 awyiN~~l~Pel~v~RG~tYtF~VegG~dp~~~~~yHP~yItd 285 (383)
..-|||+.-|.|.|++|.+.+|.|.=-.+ ..-|.|-|..
T Consensus 43 ~f~~~~~~~P~I~v~~Gd~V~v~v~N~~~----~~~H~~~I~~ 81 (148)
T TIGR03095 43 SFEIHDLKNPTIVIPEGVTVHFTVINTDT----DSGHNFDISK 81 (148)
T ss_pred eEEecCCCCCEEEEcCCCEEEEEEEeCCC----CccccEEeec
Confidence 56789999999999999999998765332 2469999874
No 29
>PRK10883 FtsI repressor; Provisional
Probab=34.95 E-value=42 Score=35.58 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=32.4
Q ss_pred EEEEcCeecceEEEEeCCeEEE-EEEcCCCCCCCC---CcCCeEEecCCCCCc
Q psy16971 243 SWYINGLLIPEINVVRGKTYTF-IVEGGLDPNTPA---KYHPFYITDDSVGGY 291 (383)
Q Consensus 243 awyiN~~l~Pel~v~RG~tYtF-~VegG~dp~~~~---~yHP~yItd~~~GG~ 291 (383)
+.-|||+..|.|.|++| +|.| +|.+++....-= --|+|+|--. .||+
T Consensus 211 ~~lvNG~~~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~-DGg~ 261 (471)
T PRK10883 211 TLLVNGVQSPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAG-DQGF 261 (471)
T ss_pred eeEECCccCCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEe-CCCc
Confidence 57799999999999986 7999 667777542211 1378776554 2444
No 30
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=34.38 E-value=61 Score=24.86 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=16.2
Q ss_pred ccCCCCccEEEEEcCeecc
Q psy16971 234 ITGHVGWGISWYINGLLIP 252 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~P 252 (383)
.+|.|.+.|.|+-||+.|.
T Consensus 10 a~G~P~P~i~W~k~g~~i~ 28 (76)
T cd05868 10 ANGNPKPSISWLTNGVPIE 28 (76)
T ss_pred eeEeCCCeEEEEECCEEcc
Confidence 3588999999999999874
No 31
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=33.91 E-value=73 Score=34.24 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=38.7
Q ss_pred EEEEcCeec----------ceEEEEeCCeEEE-EEEcCCCCCC--CCCcCCeEEecCCCCCccCCChhhhcceEEEeCcc
Q psy16971 243 SWYINGLLI----------PEINVVRGKTYTF-IVEGGLDPNT--PAKYHPFYITDDSVGGYQHKTPEEKEKVRIFAGAK 309 (383)
Q Consensus 243 awyiN~~l~----------Pel~v~RG~tYtF-~VegG~dp~~--~~~yHP~yItd~~~GG~~~~~~~~~~~~~v~aG~~ 309 (383)
++-|||+.- +.|.|++|++|.| .|.+|.+... .=--|+|+|-.. .|.+-+ +-+...+.|.+|-.
T Consensus 168 ~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~-DG~~~~--P~~~~~l~i~~GqR 244 (539)
T TIGR03389 168 AYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEV-DATYTK--PFKTKTIVIGPGQT 244 (539)
T ss_pred eEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEe-CCcccC--ceEeCeEEecCCCE
Confidence 577888752 4799999999999 4555543310 111377766554 355542 34445556655544
Q ss_pred c
Q psy16971 310 R 310 (383)
Q Consensus 310 ~ 310 (383)
+
T Consensus 245 y 245 (539)
T TIGR03389 245 T 245 (539)
T ss_pred E
Confidence 3
No 32
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=33.75 E-value=31 Score=26.57 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=14.8
Q ss_pred cCCCCccEEEEEcCeec
Q psy16971 235 TGHVGWGISWYINGLLI 251 (383)
Q Consensus 235 Tg~~~~g~awyiN~~l~ 251 (383)
+|.|.+.+.||-||..+
T Consensus 8 ~g~P~p~v~W~k~g~~l 24 (77)
T cd05760 8 DGHPRPTYQWFRDGTPL 24 (77)
T ss_pred eecCCCcEEEEECCEEC
Confidence 57888999999999876
No 33
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=33.56 E-value=2.3e+02 Score=28.41 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=28.1
Q ss_pred EEEEcCee-cceEEEEeCCeEEEEEEcCCCCCCCCCcCCeEE
Q psy16971 243 SWYINGLL-IPEINVVRGKTYTFIVEGGLDPNTPAKYHPFYI 283 (383)
Q Consensus 243 awyiN~~l-~Pel~v~RG~tYtF~VegG~dp~~~~~yHP~yI 283 (383)
+|-+||+. -|.|.+++|.+....|.-.. .+...|++=+
T Consensus 49 ~~~~nG~~pGP~irv~~Gd~v~v~v~N~~---~~~~~h~~h~ 87 (311)
T TIGR02376 49 AMTFDGSVPGPLIRVHEGDYVELTLINPP---TNTMPHNVDF 87 (311)
T ss_pred EEEECCcccCceEEEECCCEEEEEEEeCC---CCCCceeeee
Confidence 79999996 48999999999999887432 1223466644
No 34
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....
Probab=33.29 E-value=37 Score=29.30 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=17.4
Q ss_pred ecceEEEEeCCeEEEEEEcCC
Q psy16971 250 LIPEINVVRGKTYTFIVEGGL 270 (383)
Q Consensus 250 l~Pel~v~RG~tYtF~VegG~ 270 (383)
..+.|-||||+++++.++=-.
T Consensus 23 ~~~~LVVRRGQ~F~i~l~f~r 43 (118)
T PF00868_consen 23 ESPRLVVRRGQPFTITLRFNR 43 (118)
T ss_dssp SSSSEEEETTSEEEEEEEESS
T ss_pred CCCCEEEECCCEEEEEEEEcC
Confidence 368999999999999987633
No 35
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=33.21 E-value=94 Score=23.89 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=15.8
Q ss_pred cCCCCccEEEEEcCeecce
Q psy16971 235 TGHVGWGISWYINGLLIPE 253 (383)
Q Consensus 235 Tg~~~~g~awyiN~~l~Pe 253 (383)
+|.|.+.+.||-||+.+..
T Consensus 26 ~g~P~p~i~W~k~g~~l~~ 44 (100)
T cd07693 26 EGRPTPTIQWLKNGQPLET 44 (100)
T ss_pred CcCCCCEEEEEECCEECcc
Confidence 5778889999999998754
No 36
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=33.09 E-value=33 Score=26.39 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=16.5
Q ss_pred ccCCCCccEEEEEcCeecc
Q psy16971 234 ITGHVGWGISWYINGLLIP 252 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~P 252 (383)
++|+|.+-+.||-||.++.
T Consensus 7 v~G~P~P~v~W~k~~~~i~ 25 (75)
T cd05744 7 VSAIPPPQIFWKKNNEMLT 25 (75)
T ss_pred EeecCCCeEEEEECCEECC
Confidence 4688999999999999874
No 37
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=30.81 E-value=37 Score=25.52 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=15.9
Q ss_pred ccCCCCccEEEEEcCeec
Q psy16971 234 ITGHVGWGISWYINGLLI 251 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~ 251 (383)
++|+|.+.+.|+-||..+
T Consensus 8 ~~G~P~p~v~W~k~g~~l 25 (74)
T cd05748 8 ISGRPTPTVTWSKDGKPL 25 (74)
T ss_pred EeeeCCCeEEEEECCEEc
Confidence 468899999999999986
No 38
>PLN02835 oxidoreductase
Probab=29.79 E-value=61 Score=35.10 Aligned_cols=29 Identities=38% Similarity=0.496 Sum_probs=24.3
Q ss_pred EEEEcCeecceEEEEeCCeEEE-EEEcCCC
Q psy16971 243 SWYINGLLIPEINVVRGKTYTF-IVEGGLD 271 (383)
Q Consensus 243 awyiN~~l~Pel~v~RG~tYtF-~VegG~d 271 (383)
+.-|||+..|.+.|++|++|.| +|.+|.+
T Consensus 193 ~~liNG~~~~~~~v~~G~~yRlRliNa~~~ 222 (539)
T PLN02835 193 GVLINGQTQSTFSGDQGKTYMFRISNVGLS 222 (539)
T ss_pred eEEEccccCceEEECCCCEEEEEEEEcCCC
Confidence 5779999999999999999999 4555554
No 39
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=29.29 E-value=40 Score=25.50 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.6
Q ss_pred cCCCCccEEEEEcCeecc
Q psy16971 235 TGHVGWGISWYINGLLIP 252 (383)
Q Consensus 235 Tg~~~~g~awyiN~~l~P 252 (383)
+|.|.+.|.|+-||..++
T Consensus 12 ~g~P~p~i~W~k~g~~~~ 29 (74)
T cd05745 12 QGYPQPVIAWTKGGSQLS 29 (74)
T ss_pred CEecCCEEEEEECCEECC
Confidence 578889999999999764
No 40
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=28.94 E-value=55 Score=24.85 Aligned_cols=20 Identities=40% Similarity=0.612 Sum_probs=16.6
Q ss_pred ccCCCCccEEEEEcCeecce
Q psy16971 234 ITGHVGWGISWYINGLLIPE 253 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~Pe 253 (383)
+.|.|.+.+.||-||.++.+
T Consensus 7 v~g~P~p~v~W~k~g~~l~~ 26 (71)
T cd04976 7 VKAYPPPEIQWYKNGKLISE 26 (71)
T ss_pred EEEeCCCEEEEEECCEECCC
Confidence 45788899999999998754
No 41
>PRK02710 plastocyanin; Provisional
Probab=28.49 E-value=90 Score=26.69 Aligned_cols=38 Identities=18% Similarity=0.428 Sum_probs=26.6
Q ss_pred ceeEEEeCCCCccCCCCCccCCCCccEEEEEcCeecceEEEEeCCeEEEEEEcCCCC
Q psy16971 216 GVLYAQMGPTGGKRGYPAITGHVGWGISWYINGLLIPEINVVRGKTYTFIVEGGLDP 272 (383)
Q Consensus 216 ~~f~a~~gp~gg~rgy~~iTg~~~~g~awyiN~~l~Pel~v~RG~tYtF~VegG~dp 272 (383)
.+.+++||-.+|.-.|.. ++|.|+.|.+++|... +..|
T Consensus 29 ~~~~V~~~~~~~~~~F~P------------------~~i~v~~Gd~V~~~N~-~~~~ 66 (119)
T PRK02710 29 ETVEVKMGSDAGMLAFEP------------------STLTIKAGDTVKWVNN-KLAP 66 (119)
T ss_pred ceEEEEEccCCCeeEEeC------------------CEEEEcCCCEEEEEEC-CCCC
Confidence 467788876555544443 6899999999999754 3334
No 42
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=28.47 E-value=41 Score=26.26 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.4
Q ss_pred ccCCCCccEEEEEcCeecc
Q psy16971 234 ITGHVGWGISWYINGLLIP 252 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~P 252 (383)
++|.|-+.|.||-||.++.
T Consensus 7 v~G~P~P~i~W~k~~~~i~ 25 (75)
T cd05892 7 ISAIPPPKIFWKRNNEMVQ 25 (75)
T ss_pred EEecCCCeEEEEECCEECc
Confidence 4688999999999999873
No 43
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=28.19 E-value=76 Score=24.11 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=16.2
Q ss_pred cCCCCccEEEEEcCeecce
Q psy16971 235 TGHVGWGISWYINGLLIPE 253 (383)
Q Consensus 235 Tg~~~~g~awyiN~~l~Pe 253 (383)
+|.|-+.|.|+.||+.++.
T Consensus 11 ~G~P~P~v~W~k~g~~l~~ 29 (69)
T cd05739 11 VGAPMPYVKWMKGGEELTK 29 (69)
T ss_pred eecCCCEEEEEECCEECCC
Confidence 5889999999999987654
No 44
>PLN02168 copper ion binding / pectinesterase
Probab=27.97 E-value=82 Score=34.24 Aligned_cols=50 Identities=24% Similarity=0.318 Sum_probs=32.5
Q ss_pred EEEEcCee--cceEEEEeCCeEEE-EEEcCCCCCC--CCCcCCeEEecCCCCCccC
Q psy16971 243 SWYINGLL--IPEINVVRGKTYTF-IVEGGLDPNT--PAKYHPFYITDDSVGGYQH 293 (383)
Q Consensus 243 awyiN~~l--~Pel~v~RG~tYtF-~VegG~dp~~--~~~yHP~yItd~~~GG~~~ 293 (383)
+.-|||+- .|.|.|++|++|.| +|.+|.+... .=--|.|.|-- ..|++-.
T Consensus 190 ~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa-~DG~~v~ 244 (545)
T PLN02168 190 GILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE-TEGTYVQ 244 (545)
T ss_pred EEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE-ECCeECC
Confidence 57799983 68999999999999 4555554210 00137777663 4566554
No 45
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=27.74 E-value=80 Score=25.99 Aligned_cols=40 Identities=30% Similarity=0.607 Sum_probs=24.6
Q ss_pred EEEEcCeecceEEEEeCCeEEEEEEcCCCCCCCCCcCCeEEecCC
Q psy16971 243 SWYINGLLIPEINVVRGKTYTFIVEGGLDPNTPAKYHPFYITDDS 287 (383)
Q Consensus 243 awyiN~~l~Pel~v~RG~tYtF~VegG~dp~~~~~yHP~yItd~~ 287 (383)
+|.| .+|.+ ..|..|.|+|.|..+|+.-..+.|-.+.-||
T Consensus 46 vW~~---~v~~~--~~g~~Y~y~i~g~~~p~~~~~~~~~~~~~DP 85 (103)
T cd02856 46 VWHG---FLPGI--KAGQRYGFRVHGPYDPERGLRFNPAKLLLDP 85 (103)
T ss_pred EEEE---EECCC--CCCCEEEEEECCccCcccCcccCCCeEEecC
Confidence 6765 23333 3689999999996666544445554444444
No 46
>PLN02991 oxidoreductase
Probab=27.50 E-value=64 Score=35.06 Aligned_cols=48 Identities=27% Similarity=0.340 Sum_probs=31.1
Q ss_pred EEEEcCee-cceEEEEeCCeEEE-EEEcCCCCC--CCCCcCCeEEecCCCCCc
Q psy16971 243 SWYINGLL-IPEINVVRGKTYTF-IVEGGLDPN--TPAKYHPFYITDDSVGGY 291 (383)
Q Consensus 243 awyiN~~l-~Pel~v~RG~tYtF-~VegG~dp~--~~~~yHP~yItd~~~GG~ 291 (383)
+--|||+- .+.|.|++|++|.| +|.+|.+.. ..=--|+|.|-.. .|++
T Consensus 192 ~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~-DG~~ 243 (543)
T PLN02991 192 GILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEV-EGTH 243 (543)
T ss_pred EEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEe-CCcc
Confidence 67799995 47899999999999 455555431 1111477766543 3444
No 47
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=27.50 E-value=1.2e+02 Score=24.54 Aligned_cols=19 Identities=11% Similarity=0.317 Sum_probs=16.2
Q ss_pred CCCCccEEEEEcCeecceE
Q psy16971 236 GHVGWGISWYINGLLIPEI 254 (383)
Q Consensus 236 g~~~~g~awyiN~~l~Pel 254 (383)
|.|..-|.||-||+.++..
T Consensus 11 skP~a~i~W~k~~~~l~~~ 29 (80)
T cd05885 11 SKPAATLRWYRDRKELKGV 29 (80)
T ss_pred ccCCCeEEEEECCEECCCC
Confidence 5688899999999998764
No 48
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=26.66 E-value=79 Score=25.40 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.6
Q ss_pred cCCCCccEEEEEcCeecc
Q psy16971 235 TGHVGWGISWYINGLLIP 252 (383)
Q Consensus 235 Tg~~~~g~awyiN~~l~P 252 (383)
+|.|-+.|.||-||.++.
T Consensus 29 ~G~P~P~i~W~k~g~~l~ 46 (94)
T cd05848 29 RGNPVPTYRWLRNGTEID 46 (94)
T ss_pred eecCCCEEEEEECCeECc
Confidence 478889999999999874
No 49
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=26.66 E-value=43 Score=25.67 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=15.6
Q ss_pred cCCCCccEEEEEcCeecce
Q psy16971 235 TGHVGWGISWYINGLLIPE 253 (383)
Q Consensus 235 Tg~~~~g~awyiN~~l~Pe 253 (383)
+|.|.+-+.||.|+..+|+
T Consensus 11 ~g~P~p~v~W~~~~~~~~~ 29 (78)
T cd05743 11 TGVPTPIINWRLNWGHVPD 29 (78)
T ss_pred EEecCCEEEEEECCeECCC
Confidence 4778889999999987763
No 50
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=26.04 E-value=54 Score=24.78 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=13.7
Q ss_pred CCCCccEEEEEcCeecc
Q psy16971 236 GHVGWGISWYINGLLIP 252 (383)
Q Consensus 236 g~~~~g~awyiN~~l~P 252 (383)
+.|...+.||.||+.++
T Consensus 10 ~~p~~~~~W~~~g~~i~ 26 (76)
T cd05895 10 EYPSLRFKWFKNGKEIG 26 (76)
T ss_pred CCCCCceEEEECCcccc
Confidence 45677899999999874
No 51
>PF07711 RabGGT_insert: Rab geranylgeranyl transferase alpha-subunit, insert domain ; InterPro: IPR009087 Rab geranylgeranyltransferase (RabGGT) catalyses the transfer of geranylgeranyl groups to the C-terminal cysteine residues of Rab proteins, Ras-related small GTPases that function in intracellular vesicular transport []. RabGGT is only able to prenylate Rab when it is complexed to the Rab escort protein (REP), after which REP remains bound to the prenylated Rab and delivers it to its target membrane. RabGGT is a member of the protein prenyltransferase family (IPR008940 from INTERPRO), all of which are heterodimers consisting of alpha and beta subunits. RabGGT is distinct from other members of the prenyltransferase family because of the presence of an Ig-like insert domain in the alpha subunit that is folded into an eight-stranded sandwich between two helices in the helical domain.; GO: 0004663 Rab geranylgeranyltransferase activity, 0008270 zinc ion binding; PDB: 1DCE_C 1LTX_A.
Probab=24.97 E-value=53 Score=28.40 Aligned_cols=41 Identities=15% Similarity=0.231 Sum_probs=24.2
Q ss_pred eEEEeeEEECCEEEEEEEccCCCCCCCCccccCCCcEEEEE
Q psy16971 69 VRLLNAALVNGYSIVTYQRPLRSHDILDHDIYTNQSQAIIW 109 (383)
Q Consensus 69 i~Lvsg~r~nGvT~V~FrRpL~T~D~~D~~I~~~~t~~VIW 109 (383)
|.-+..+|+.+-.+|.|+|||...-.....+.-+.++.|=|
T Consensus 3 irCl~VSr~e~~l~V~FSrPv~v~~~~LlL~~D~~Pl~VeW 43 (102)
T PF07711_consen 3 IRCLHVSRDEACLTVAFSRPVNVGSETLLLFVDGSPLTVEW 43 (102)
T ss_dssp EEEEEEETTTTEEEEEEEEEE-STTB-EEEEESSSEE----
T ss_pred EEEEEEecccCeEEEEecceeeeeeeeEEEEEcCCceEEEe
Confidence 55677788899999999999999222223232246667777
No 52
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=24.38 E-value=53 Score=25.67 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=15.3
Q ss_pred cCCCCccEEEEEcCeecc
Q psy16971 235 TGHVGWGISWYINGLLIP 252 (383)
Q Consensus 235 Tg~~~~g~awyiN~~l~P 252 (383)
+|.|.+.+.|+.||..++
T Consensus 24 ~g~p~p~v~W~k~g~~~~ 41 (85)
T cd05728 24 SGNPRPAYRWLKNGQPLA 41 (85)
T ss_pred eEeCCCEEEEEECCEECC
Confidence 467888999999999875
No 53
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=24.27 E-value=51 Score=25.62 Aligned_cols=19 Identities=16% Similarity=0.186 Sum_probs=16.5
Q ss_pred ccCCCCccEEEEEcCeecc
Q psy16971 234 ITGHVGWGISWYINGLLIP 252 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~P 252 (383)
++|.|-+-|.||-||.+++
T Consensus 7 v~G~P~P~v~W~k~~~~l~ 25 (75)
T cd05893 7 VSGVPHPQIFWKKENESLT 25 (75)
T ss_pred EeEecCCEEEEEECCEECC
Confidence 4689999999999999874
No 54
>PRK10965 multicopper oxidase; Provisional
Probab=23.80 E-value=77 Score=34.18 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=32.2
Q ss_pred cEEEEEcCeecceEEEEeCCeEEEE-EEcCCCCCC-CC--CcCCeEEecCCCCCc
Q psy16971 241 GISWYINGLLIPEINVVRGKTYTFI-VEGGLDPNT-PA--KYHPFYITDDSVGGY 291 (383)
Q Consensus 241 g~awyiN~~l~Pel~v~RG~tYtF~-VegG~dp~~-~~--~yHP~yItd~~~GG~ 291 (383)
|-..-|||+.-|.+.|+ |.+|.|+ |.+++...- -. --|+|+|--. .||+
T Consensus 212 gd~~lVNG~~~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~-DG~~ 264 (523)
T PRK10965 212 GDTLLTNGAIYPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIAS-DGGL 264 (523)
T ss_pred CCeEEECCcccceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEe-CCCc
Confidence 34678999999999886 5699995 456654321 11 1389887665 3555
No 55
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=23.78 E-value=63 Score=25.94 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=15.2
Q ss_pred cCCCCccEEEEEcCeecc
Q psy16971 235 TGHVGWGISWYINGLLIP 252 (383)
Q Consensus 235 Tg~~~~g~awyiN~~l~P 252 (383)
+|.|.+-|.||.||..++
T Consensus 29 ~g~P~p~i~W~~~g~~l~ 46 (94)
T cd05850 29 RASPPATYRWKMNGTEIK 46 (94)
T ss_pred eeCCCCEEEEEECCEECc
Confidence 467888999999999874
No 56
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=23.50 E-value=1e+02 Score=29.69 Aligned_cols=11 Identities=45% Similarity=1.084 Sum_probs=9.7
Q ss_pred cEEEEEcCeec
Q psy16971 241 GISWYINGLLI 251 (383)
Q Consensus 241 g~awyiN~~l~ 251 (383)
+|.|||+|+++
T Consensus 193 ~i~fyvDG~~~ 203 (258)
T cd02178 193 TIRFYIDGVLV 203 (258)
T ss_pred eEEEEECCEEE
Confidence 68999999975
No 57
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=22.78 E-value=1.4e+02 Score=19.99 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=12.7
Q ss_pred CCCccEEEEEcCeecc
Q psy16971 237 HVGWGISWYINGLLIP 252 (383)
Q Consensus 237 ~~~~g~awyiN~~l~P 252 (383)
.+...+.||-|+..++
T Consensus 14 ~~~~~v~W~~~~~~~~ 29 (63)
T smart00408 14 DPVPNITWLKDGKPLP 29 (63)
T ss_pred CCCCeEEEEECCEECC
Confidence 3556789999998876
No 58
>PRK10965 multicopper oxidase; Provisional
Probab=22.72 E-value=77 Score=34.21 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=29.4
Q ss_pred EEEEEcCee----cceEEEEeCCeEEEEEEcCCCCCCCCCcCCeEEe
Q psy16971 242 ISWYINGLL----IPEINVVRGKTYTFIVEGGLDPNTPAKYHPFYIT 284 (383)
Q Consensus 242 ~awyiN~~l----~Pel~v~RG~tYtF~VegG~dp~~~~~yHP~yIt 284 (383)
.+|.|||+. .|++.|++|.+..+.|..-.+. .-|||=|-
T Consensus 412 ~~~~ING~~~~~~~~~~~~~~G~~e~w~i~N~~~~----~~Hp~HlH 454 (523)
T PRK10965 412 HANKINGKAFDMNKPMFAAKKGQYERWVISGVGDM----MLHPFHIH 454 (523)
T ss_pred ccccCCCeECCCCCcceecCCCCEEEEEEEeCCCC----CccCeEEe
Confidence 357999996 5779999999999988654321 23999764
No 59
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=22.61 E-value=1.8e+02 Score=24.48 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=10.1
Q ss_pred EEEEeCCeEEEEEEc
Q psy16971 254 INVVRGKTYTFIVEG 268 (383)
Q Consensus 254 l~v~RG~tYtF~Veg 268 (383)
|.|+-|+.|.|.|+-
T Consensus 96 v~l~~g~~~~i~v~y 110 (136)
T smart00758 96 LYLLAGGTYPIRIEY 110 (136)
T ss_pred EEEeCCcEEEEEEEE
Confidence 666667777776654
No 60
>KOG3954|consensus
Probab=22.15 E-value=61 Score=32.81 Aligned_cols=44 Identities=25% Similarity=0.215 Sum_probs=29.9
Q ss_pred CCCcEEEEeecCCCC-CCCCccccEEEEEEeCC-CCceEEEEeeee
Q psy16971 2 EFGEYMSFGLSGDPL-RNQMIGADVVVAWIDQE-TLNGYAVDYYLT 45 (383)
Q Consensus 2 ~e~~YmAFG~S~~~~-~~~M~GADVVVa~vD~~-~G~~~a~Dyyit 45 (383)
..+-|||+|+||.-. -.+|..+-|+||--.+. .--..+.||=|.
T Consensus 274 APeLYiAvGisGAIQHLAGmKDSKvIvAINkDpdAPIFqvAD~Glv 319 (336)
T KOG3954|consen 274 APELYIAVGISGAIQHLAGMKDSKVIVAINKDPDAPIFQVADYGLV 319 (336)
T ss_pred ccceEEEEeccHHHHHhhcCccceEEEEecCCCCCCceeeecccch
Confidence 346799999998753 37899999999864332 223445565443
No 61
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=22.05 E-value=57 Score=26.97 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=16.1
Q ss_pred cCCCCccEEEEEcCeecce
Q psy16971 235 TGHVGWGISWYINGLLIPE 253 (383)
Q Consensus 235 Tg~~~~g~awyiN~~l~Pe 253 (383)
.|.|.+.+.||-||+.+++
T Consensus 28 ~g~P~P~v~W~kdg~~l~~ 46 (101)
T cd05859 28 EAYPPPQIRWLKDNRTLIE 46 (101)
T ss_pred EEeCCCceEEEECCEECcC
Confidence 4788889999999998763
No 62
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=21.88 E-value=64 Score=25.27 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=17.3
Q ss_pred ccCCCCccEEEEEcCeecce
Q psy16971 234 ITGHVGWGISWYINGLLIPE 253 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~Pe 253 (383)
++|+|.+.+.||=||..+++
T Consensus 7 v~g~P~P~v~W~kdg~~l~~ 26 (72)
T cd07702 7 VKAFPAPEVIWLKDGLPAAE 26 (72)
T ss_pred EEEcCCCeEEEEECCEECCC
Confidence 56899999999999998765
No 63
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=21.75 E-value=36 Score=31.56 Aligned_cols=36 Identities=19% Similarity=0.562 Sum_probs=26.0
Q ss_pred ccCCCCccEEEEEcCeecceEEEEeCCeEEEEEEcCC
Q psy16971 234 ITGHVGWGISWYINGLLIPEINVVRGKTYTFIVEGGL 270 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~Pel~v~RG~tYtF~VegG~ 270 (383)
|-||+|||-++++.+.. |+..+-==--|=|.-+|++
T Consensus 70 I~~H~GWGe~Lflkdv~-P~a~li~Y~E~~y~~~g~d 105 (171)
T PF12000_consen 70 IIAHPGWGETLFLKDVF-PDAPLIGYFEFYYRASGAD 105 (171)
T ss_pred EEEcCCcchhhhHHHhC-CCCcEEEEEEEEecCCCCc
Confidence 67999999999999987 6655543344555666655
No 64
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=21.56 E-value=74 Score=23.95 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=14.3
Q ss_pred ccCCCCccEEEEEcCee
Q psy16971 234 ITGHVGWGISWYINGLL 250 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l 250 (383)
.+|.|.+.+.||-||..
T Consensus 7 ~~G~P~P~v~W~k~~~~ 23 (75)
T cd05763 7 ATGHPTPQIAWQKDGGT 23 (75)
T ss_pred cccccCCEEEEEeCCCc
Confidence 46889999999999863
No 65
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=20.90 E-value=80 Score=26.20 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=15.6
Q ss_pred cCCCCccEEEEEcCeecc
Q psy16971 235 TGHVGWGISWYINGLLIP 252 (383)
Q Consensus 235 Tg~~~~g~awyiN~~l~P 252 (383)
.|.|.+-+.|+.||.+++
T Consensus 33 ~G~P~p~i~W~k~g~~l~ 50 (109)
T cd05773 33 QGVPRVQFRWAKNGVPLD 50 (109)
T ss_pred cccCCCEEEEEECCEECC
Confidence 478889999999999874
No 66
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=20.59 E-value=76 Score=23.89 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.3
Q ss_pred ccCCCCccEEEEEcCeec
Q psy16971 234 ITGHVGWGISWYINGLLI 251 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~ 251 (383)
.+|.|.+.+.||-||+.+
T Consensus 7 v~g~P~p~v~W~k~~~~l 24 (76)
T cd05736 7 AEGIPLPRLTWLKNGMDI 24 (76)
T ss_pred eeecCCCEEEEEECCEEC
Confidence 357899999999999875
No 67
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=20.51 E-value=1.9e+02 Score=22.30 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.3
Q ss_pred ccCCCCccEEEEEcCeec
Q psy16971 234 ITGHVGWGISWYINGLLI 251 (383)
Q Consensus 234 iTg~~~~g~awyiN~~l~ 251 (383)
..|.|.+.+.||-||..+
T Consensus 7 ~~G~P~P~v~W~k~g~~~ 24 (77)
T cd05875 7 AKGNPVPTFQWTRNGKFF 24 (77)
T ss_pred ccccCCCEEEEEECCEEc
Confidence 358899999999999865
No 68
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=20.31 E-value=2.5e+02 Score=20.83 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=13.1
Q ss_pred CCCCccEEEEEcCeecc
Q psy16971 236 GHVGWGISWYINGLLIP 252 (383)
Q Consensus 236 g~~~~g~awyiN~~l~P 252 (383)
|.|...+.||-||..+.
T Consensus 20 ~~p~~~v~W~k~~~~~~ 36 (85)
T cd05729 20 GNPRPTITWLKDGKPFK 36 (85)
T ss_pred CCCCCeEEEEECCEECc
Confidence 45677899999988753
No 69
>PF12480 DUF3699: Protein of unknown function (DUF3699) ; InterPro: IPR022168 This domain family is found in eukaryotes, and is approximately 80 amino acids in length.
Probab=20.16 E-value=87 Score=25.46 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=26.2
Q ss_pred ccceeeeecCCCCeeEEEcCCCCCCCeeE
Q psy16971 346 QRTLSLICDHGEPGVIQWTPDANTPDTVY 374 (383)
Q Consensus 346 ~rtL~l~C~~g~p~~l~wtp~~~tPd~vY 374 (383)
+++|+++|-.|-+-.|.-+++.+.|++++
T Consensus 26 ~~~l~lk~~t~r~~yl~L~~~~~~~~~~F 54 (77)
T PF12480_consen 26 KQQLKLKLVTGRPFYLQLCAPADKPETLF 54 (77)
T ss_pred ccEEEEEEccCCEEEEEEeCcccCcchhH
Confidence 57899999999999999999999998864
Done!