RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16971
(383 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 9e-04
Identities = 62/380 (16%), Positives = 102/380 (26%), Gaps = 148/380 (38%)
Query: 17 RNQMIGADV--VVAWIDQE------TLNGYAVDYYLTDKSQCAGGRGSCPDYRIQDNTES 68
+ G D+ + A + QE +Y ++ R + S
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI---TARIMAKR------PFDKKSNS 143
Query: 69 VRLLNAALVNGYSIVT----------YQRPLRSHDILDHDIYTNQSQAIIWAIGP-LN-- 115
L A +V Y LR D+ + Y +I L+
Sbjct: 144 -ALFRAVGEGNAQLVAIFGGQGNTDDYFEELR--DL--YQTYHVLVGDLIKFSAETLSEL 198
Query: 116 SKQEVSFHSVFPKK-NI---LFNFGRTP---YW-NCPI--P------------EGETGTP 153
+ + VF + NI L N TP Y + PI P +
Sbjct: 199 IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 154 NHGEYSDESSGANTKVQEVLGYWVIVSVAVEPARS-----------------------KS 190
GE GA Q + + +VA+ S ++
Sbjct: 259 TPGELRSYLKGATGHSQGL-----VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 191 PPTPAPAPRDEAWEIPPIQCNEPDDGVLYAQMGPTGGKRGYP--AITG--------HVGW 240
P + P E ++GV P+ P +I+ +V
Sbjct: 314 YPNTSLPPSILE------DSLENNEGV------PS------PMLSISNLTQEQVQDYVN- 354
Query: 241 GISWYINGLLIPE-----INVVRGKTYTFIVEG------GLDPN-----TPAKYHPFYIT 284
N L P I++V G +V G GL+ P+
Sbjct: 355 ----KTNSHL-PAGKQVEISLVNGAK-NLVVSGPPQSLYGLNLTLRKAKAPSG------L 402
Query: 285 DDSVGGYQHKTPEEKEKVRI 304
D Q + P + K++
Sbjct: 403 D------QSRIPFSERKLKF 416
Score = 28.9 bits (64), Expect = 3.8
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 18/50 (36%)
Query: 324 LCNWTPDPEQPPADEF-----VSF---GAYQ--------RTLSLICDHGE 357
+ W +P P ++ +S G Q + L GE
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF--TPGE 262
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A
{Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A
1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C*
1z6v_A 1z6w_A
Length = 334
Score = 30.6 bits (68), Expect = 0.75
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 12/115 (10%)
Query: 20 MIGADVVVAWIDQETLNGYAVDYYLTDKSQCAGGRGSCPDYRIQDNTESVRLLNAALVNG 79
+ VA+I + T V L+D+++ CPD + + + A V
Sbjct: 200 LRDGAGDVAFIGEST-----VFEDLSDEAERDEYELLCPDNTR-KPVDKFKDCHLARVPS 253
Query: 80 YSIVTYQRPLRSHDILDHDIYTNQSQAIIWAIGPLNSKQEVSFHSVFPKKNILFN 134
+++V RS + + I+ QA G S + F S +K++LF
Sbjct: 254 HAVVA-----RSVNGKEDAIWNLLRQAQEK-FGKDKSPKFQLFGSPSGQKDLLFK 302
>3rbj_A Sortase C1, sortase family protein; sortase fold, beta-barrel,
LID-mutant, PILI BIOG hydrolase; 2.30A {Streptococcus
agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A
Length = 230
Score = 28.4 bits (63), Expect = 3.5
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 12/49 (24%)
Query: 204 EIPPIQCNEP-----DDGVLYAQMG-------PTGGKRGYPAITGHVGW 240
IP I + P + L +G P GG+ + +T H G
Sbjct: 88 IIPRINQDIPIYAGSAEENLQRGVGHLEGTSLPVGGESTHAVLTAHRGL 136
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate,
glycolysis, MAG metal-binding, oxidoreductase, thiamine
pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A*
2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Length = 886
Score = 28.6 bits (64), Expect = 4.5
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 14/88 (15%)
Query: 283 ITDDSVGGYQHKTPEEKEKVRIFAGAKRDKFGNVVPTGVGRLCNWTPDPEQPPADEFVSF 342
++D + + T E + + A+R K +P+ R N+T E P +F +
Sbjct: 428 VSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPS---RQPNFTEKLELPSLQDFGAL 484
Query: 343 -----------GAYQRTLSLICDHGEPG 359
A+ R L+++ +
Sbjct: 485 LEEQSKEISTTIAFVRALNVMLKNKSIK 512
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 27.8 bits (61), Expect = 5.9
Identities = 7/61 (11%), Positives = 21/61 (34%)
Query: 291 YQHKTPEEKEKVRIFAGAKRDKFGNVVPTGVGRLCNWTPDPEQPPADEFVSFGAYQRTLS 350
+ + +++ I + N V L + ++ + +S G + ++
Sbjct: 231 KNYINDKRQKEKIILVYGRPSVKRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKDIA 290
Query: 351 L 351
L
Sbjct: 291 L 291
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous
oxidase; 1.95A {Campylobacter jejuni subsp}
Length = 481
Score = 28.0 bits (62), Expect = 6.2
Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 10/119 (8%)
Query: 178 IVSVAVEPARSKSPPTPAPAPRDEAWEIPPIQCNEPDDGVLYAQMGPTGGKRGYPAITGH 237
+ +A + ++ P + E P E + ++ G G
Sbjct: 311 TLFLANINLKKENVELPKNLKIFKPSEEPK----EFKEIIMSEDHMQMHGMMGKSEGELK 366
Query: 238 VGWGISWYINGLL----IPEINVVRGKTYTFIVEGGLDPNTPAKYH--PFYITDDSVGG 290
+ + IN +++ G +IV + P H F + + G
Sbjct: 367 IALASMFLINRKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNG 425
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase,
multicopper oxidase, hexamer; 2.30A {Streptomyces
antibioticus} PDB: 3gyr_A
Length = 612
Score = 28.0 bits (61), Expect = 6.5
Identities = 16/115 (13%), Positives = 29/115 (25%), Gaps = 12/115 (10%)
Query: 187 RSKSPPTPAPAPRDEAWEIPPIQCNEPDDGV----LYAQMGPTGGKRGYPAITGHVGWGI 242
R ++P P +PP+ D+ + + P
Sbjct: 2 REQAPAPGELTPFAAPLTVPPVLRPASDEVTRETEIALRPTWVRLHPQLPPTL------- 54
Query: 243 SWYING-LLIPEINVVRGKTYTFIVEGGLDPNTPAKYHPFYITDDSVGGYQHKTP 296
W +G + P I V RG+ + + + G T
Sbjct: 55 MWGYDGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNTE 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 6.7
Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 27/97 (27%)
Query: 273 NTPAKYHPFYITDDSVGGY--QH-----KTPEEKEKVRIFAGAKRDKFGN-------VVP 318
N P + + + Y H K E E++ +F R F + +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF----RMVFLDFRFLEQKIRH 509
Query: 319 TGVGRLCNWTPDPEQPPADEFVSFGAYQRTLSLICDH 355
W + + Y+ ICD+
Sbjct: 510 DST----AW--NASGSILNTLQQLKFYKP---YICDN 537
>2xwg_A Sortase; hydrolase, fimbrial assembly; 2.40A {Actinomyces oris}
Length = 235
Score = 27.6 bits (61), Expect = 7.0
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 216 GVLYAQMGPTGGKRGYPAITGHVGW 240
G L+ P GG + +TGH G
Sbjct: 130 GHLFGTSLPVGGPSTHSVLTGHTGL 154
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.137 0.440
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,284,639
Number of extensions: 390888
Number of successful extensions: 904
Number of sequences better than 10.0: 1
Number of HSP's gapped: 902
Number of HSP's successfully gapped: 22
Length of query: 383
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 288
Effective length of database: 4,049,298
Effective search space: 1166197824
Effective search space used: 1166197824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)