RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16971
         (383 letters)



>d1pl3a_ b.1.9.1 (A:) Cytochrome domain of cellobiose dehydrogenase
           {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
          Length = 186

 Score = 41.4 bits (97), Expect = 5e-05
 Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 18/124 (14%)

Query: 6   YMSFGLSGDPLRNQMIGADVVVAWIDQETLNGYAVDYYLTDKSQCAGGRGSCPDYRIQDN 65
           ++   L G           ++VAW +       +   + T   Q        P       
Sbjct: 56  WIGIALGG-----AHNNDLLLVAWANGN--QIVSSTRWATGYVQ--------PT--AYTG 98

Query: 66  TESVRLLNAALVN-GYSIVTYQRPLRSHDILDHDIYTNQSQAIIWAIGPLNSKQEVSFHS 124
           T ++  L    +N  +    ++    +       I       + WA   +         S
Sbjct: 99  TATLTTLPETTINSTHWKWVFRCQGCTEWNNGGGIDVTSQGVLAWAFSNVAVDDPSDPQS 158

Query: 125 VFPK 128
            F +
Sbjct: 159 TFSE 162


>d1ikpa1 b.29.1.7 (A:2-251) Exotoxin A, N-terminal domain
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 250

 Score = 28.5 bits (63), Expect = 1.1
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 16/92 (17%)

Query: 187 RSKSPPTPAPAPRDEAWEIPPIQCNEPDDGVLYAQMGPTGGKRGYPAITGHVGWGISWYI 246
                       R     + P   +    GVL+  M   GG     A+   +   +S   
Sbjct: 11  AKACVLDLKDGVRSSRMSVDPAIADTNGQGVLHYSMVLEGGND---ALKLAIDNALSITS 67

Query: 247 NGLLIPEINVVRGKTYTFIVEGGLDPNTPAKY 278
           +GL             T  +EGG++PN P +Y
Sbjct: 68  DGL-------------TIRLEGGVEPNKPVRY 86


>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId:
           920]}
          Length = 153

 Score = 26.7 bits (58), Expect = 3.2
 Identities = 8/56 (14%), Positives = 14/56 (25%), Gaps = 4/56 (7%)

Query: 243 SWYINGLLIPEINVVRGKTYTFIVEGGLDPNTPAKYHPFYITDDSVGGYQHKTPEE 298
           S+ ++    P + +  G T                 H F IT            + 
Sbjct: 51  SFEVHDKKNPTLEIPAGATVDVTFINTNKGFG----HSFDITKKGPPYAVMPVIDP 102


>d1mpga2 d.129.1.2 (A:1-99) 3-Methyladenine DNA glycosylase II (gene
           alkA or aidA) {Escherichia coli [TaxId: 562]}
          Length = 99

 Score = 25.8 bits (57), Expect = 4.0
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 3/30 (10%)

Query: 338 EFVSFGAYQRTLSLICDHGEPGVIQWTPDA 367
           E V+   Y R+L++       GV+   PD 
Sbjct: 28  ETVADSYYARSLAV---GEYRGVVTAIPDI 54


>d1sg5a1 b.137.1.2 (A:1-86) Inhibitor of Rho Rof {Escherichia coli
          [TaxId: 562]}
          Length = 86

 Score = 25.4 bits (56), Expect = 4.4
 Identities = 8/52 (15%), Positives = 12/52 (23%), Gaps = 7/52 (13%)

Query: 20 MIGADVVVAWIDQETLNGYAVDYYLTDKSQCAGGRGSCPDYRIQDNTESVRL 71
               + +   D E L   A D       +                T  +RL
Sbjct: 23 QHHLMLTLELKDGEKLQAKASDLVSRKNVEYLV-------VEAAGETRELRL 67


>d1llaa3 b.1.18.3 (A:380-628) Arthropod hemocyanin, C-terminal
           domain {Horseshoe crab (Limulus polyphemus) [TaxId:
           6850]}
          Length = 249

 Score = 26.4 bits (58), Expect = 6.2
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 293 HKTPEEKEKVRIFAGAKRDKFGNVVPTGVGRL 324
           +   ++   VRIF   K D+ GN +     R 
Sbjct: 71  NSASDKHATVRIFLAPKYDELGNEIKADELRR 102


>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 395

 Score = 25.9 bits (55), Expect = 8.7
 Identities = 12/44 (27%), Positives = 16/44 (36%)

Query: 172 VLGYWVIVSVAVEPARSKSPPTPAPAPRDEAWEIPPIQCNEPDD 215
           V  Y +   V  +   S      A APR  A  +PP   N   +
Sbjct: 44  VSSYALCTQVLEDRRFSMKETAAAGAPRLNALTVPPEVVNNMGN 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.137    0.440 

Gapped
Lambda     K      H
   0.267   0.0492    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,569,125
Number of extensions: 77202
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 9
Length of query: 383
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,213,086
Effective search space: 359073456
Effective search space used: 359073456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.1 bits)