BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16975
(728 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KIF|A Chain A, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|B Chain B, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|C Chain C, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|D Chain D, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|E Chain E, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|F Chain F, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|G Chain G, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|H Chain H, D-Amino Acid Oxidase From Pig Kidney
pdb|1DAO|A Chain A, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|B Chain B, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|C Chain C, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|D Chain D, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|E Chain E, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|F Chain F, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|G Chain G, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|H Chain H, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DDO|A Chain A, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|B Chain B, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|C Chain C, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|D Chain D, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|E Chain E, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|F Chain F, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|G Chain G, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|H Chain H, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1VE9|A Chain A, Porcine Kidney D-amino Acid Oxidase
pdb|1VE9|B Chain B, Porcine Kidney D-amino Acid Oxidase
Length = 347
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 152/367 (41%), Gaps = 82/367 (22%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNC----DVTVIADKFNMDTTSDGAAGLFEPSPNFMGP 307
+V ++GAG+IGLSTAL + R+ + DV V AD+F TT+D AAGL++P + P
Sbjct: 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTS--EP 59
Query: 308 DLETTKEW----IRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKR 363
W Y H + N G+ ++GYNL ++ + Y K ++ +++
Sbjct: 60 SNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLF---REAVPDPYWKDMVLGFRK 116
Query: 364 MSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRD 423
++ EL ++ P D++YG + ++L++ R +L W L ER + V+ + +
Sbjct: 117 LTPREL-DMFP-DYRYGWFNTSLILEGRKYLQW---------LTERLTERGVKFFLRKVE 165
Query: 424 SLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENH 483
S E+V+ G + +AG+L + +Q G + K + +N
Sbjct: 166 SF--------EEVARGGADVIINCT---GVWAGVLQPDPLLQPGRG-QIIKVDAPWLKNF 213
Query: 484 YLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAY 543
+ D + GIY S +IP +Q
Sbjct: 214 IIT-------------------HDLERGIYNSPYIIPG-------LQA------------ 235
Query: 544 IIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRH 603
VTLGGT GN + D I + P + A + + G RP R
Sbjct: 236 --------VTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRP 287
Query: 604 HVRVERD 610
VR+ER+
Sbjct: 288 QVRLERE 294
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 690 IVHNYGHGGYGVTSAPGSARCAVSVF 715
++HNYGHGGYG+T G A +F
Sbjct: 305 VIHNYGHGGYGLTIHWGCALEVAKLF 330
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 634 FVHRFKAAGGKVIEKYISSFSELG-SEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRI 690
R G K + + SF E+ + I NCTG+ A L D + P RGQ I++
Sbjct: 148 LTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKV 205
>pdb|1AN9|A Chain A, D-Amino Acid Oxidase Complex With O-Aminobenzoate
pdb|1AN9|B Chain B, D-Amino Acid Oxidase Complex With O-Aminobenzoate
pdb|1EVI|A Chain A, Three-Dimensional Structure Of The Purple Intermediate Of
Porcine Kidney D-Amino Acid Oxidase
pdb|1EVI|B Chain B, Three-Dimensional Structure Of The Purple Intermediate Of
Porcine Kidney D-Amino Acid Oxidase
Length = 340
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 152/367 (41%), Gaps = 82/367 (22%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNC----DVTVIADKFNMDTTSDGAAGLFEPSPNFMGP 307
+V ++GAG+IGLSTAL + R+ + DV V AD+F TT+D AAGL++P + P
Sbjct: 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTS--EP 59
Query: 308 DLETTKEW----IRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKR 363
W Y H + N G+ ++GYNL ++ + Y K ++ +++
Sbjct: 60 SNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLF---REAVPDPYWKDMVLGFRK 116
Query: 364 MSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRD 423
++ EL ++ P D++YG + ++L++ R +L W L ER + V+ + +
Sbjct: 117 LTPREL-DMFP-DYRYGWFNTSLILEGRKYLQW---------LTERLTERGVKFFLRKVE 165
Query: 424 SLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENH 483
S E+V+ G + +AG+L + +Q G + K + +N
Sbjct: 166 SF--------EEVARGGADVIINCT---GVWAGVLQPDPLLQPGRG-QIIKVDAPWLKNF 213
Query: 484 YLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAY 543
+ D + GIY S +IP +Q
Sbjct: 214 IIT-------------------HDLERGIYNSPYIIPG-------LQA------------ 235
Query: 544 IIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRH 603
VTLGGT GN + D I + P + A + + G RP R
Sbjct: 236 --------VTLGGTFQVGNWNEINNIQDHNTIWEGCCRLEPTLKDAKIVGEYTGFRPVRP 287
Query: 604 HVRVERD 610
VR+ER+
Sbjct: 288 QVRLERE 294
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 690 IVHNYGHGGYGVTSAPGSARCAVSVF 715
++HNYGHGGYG+T G A +F
Sbjct: 305 VIHNYGHGGYGLTIHWGCALEVAKLF 330
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 634 FVHRFKAAGGKVIEKYISSFSELG-SEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRI 690
R G K + + SF E+ + I NCTG+ A L D + P RGQ I++
Sbjct: 148 LTERLTERGVKFFLRKVESFEEVARGGADVIINCTGVWAGVLQPDPLLQPGRGQIIKV 205
>pdb|3G3E|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Hydroxyquinolin-2(1h)
pdb|3G3E|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Hydroxyquinolin-2(1h)
pdb|3G3E|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Hydroxyquinolin-2(1h)
pdb|3G3E|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Hydroxyquinolin-2(1h)
Length = 351
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 88/157 (56%), Gaps = 15/157 (9%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNC----DVTVIADKFNMDTTSDGAAGLFEPSPNFMGP 307
+V ++GAG+IGLSTAL + R+ + D+ V AD+F TT+D AAGL++P P
Sbjct: 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPY--LSDP 59
Query: 308 DLETTKEWIRYSYD----HYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKR 363
+ +W + ++D H +EN G+ +I+GYNL + + K + +++
Sbjct: 60 NNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLF---HEAIPDPSWKDTVLGFRK 116
Query: 364 MSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
++ EL ++ P D+ YG + ++L++ + +L W ++
Sbjct: 117 LTPREL-DMFP-DYGYGWFHTSLILEGKNYLQWLTER 151
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 118/279 (42%), Gaps = 54/279 (19%)
Query: 459 SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLV 518
+EN G+ +I+GYNL + + K + +++++ EL ++ P D+ YG + ++L+
Sbjct: 84 AENLGLFLISGYNLFH---EAIPDPSWKDTVLGFRKLTPREL-DMFP-DYGYGWFHTSLI 138
Query: 519 IPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNR 578
+ + +L W ++ V+ + S+ + AR G D I+N
Sbjct: 139 LEGKNYLQWLTERLTERGVKFFQRKV-ESFEEV-----------AREGAD-----VIVNC 181
Query: 579 TAAVRPEILAAPVEKVWVGLRPYRHHVRVERDLTGAAQY-LTWYPVFKVYGITSVLFVHR 637
T + P+ L+P R + ++ D + LT P +Y ++ +
Sbjct: 182 TGVWAGALQRDPL------LQPGRGQI-MKVDAPWMKHFILTHDPERGIYNSPYIIPGTQ 234
Query: 638 FKAAGGKVIEKYISSFSELGS--EYNTIFN-CTGL-----GARTLCNDMHVIPVRGQ--- 686
GG + ++SEL + ++NTI+ C L AR + PVR Q
Sbjct: 235 TVTLGGIF---QLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRL 291
Query: 687 ----------TIRIVHNYGHGGYGVTSAPGSARCAVSVF 715
++HNYGHGGYG+T G A A +F
Sbjct: 292 EREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLF 330
>pdb|2DU8|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|G Chain G, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|J Chain J, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2E48|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E49|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Imino- Serine
pdb|2E49|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Imino- Serine
pdb|2E49|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Imino- Serine
pdb|2E49|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase In Complex
With Imino- Serine
pdb|2E4A|A Chain A, Crystal Structure Of Human D-amino Acid Oxidase In Complex
With O-aminobenzoate
pdb|2E4A|B Chain B, Crystal Structure Of Human D-amino Acid Oxidase In Complex
With O-aminobenzoate
pdb|2E4A|C Chain C, Crystal Structure Of Human D-amino Acid Oxidase In Complex
With O-aminobenzoate
pdb|2E4A|D Chain D, Crystal Structure Of Human D-amino Acid Oxidase In Complex
With O-aminobenzoate
pdb|2E82|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase Complexed
With Imino-Dopa
pdb|2E82|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase Complexed
With Imino-Dopa
pdb|2E82|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase Complexed
With Imino-Dopa
pdb|2E82|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase Complexed
With Imino-Dopa
pdb|3CUK|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase: Bound To
An Inhibitor
pdb|3CUK|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase: Bound To
An Inhibitor
pdb|3CUK|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase: Bound To
An Inhibitor
pdb|3CUK|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase: Bound To
An Inhibitor
Length = 347
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 88/157 (56%), Gaps = 15/157 (9%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNC----DVTVIADKFNMDTTSDGAAGLFEPSPNFMGP 307
+V ++GAG+IGLSTAL + R+ + D+ V AD+F TT+D AAGL++P P
Sbjct: 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPY--LSDP 59
Query: 308 DLETTKEWIRYSYD----HYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKR 363
+ +W + ++D H +EN G+ +I+GYNL + + K + +++
Sbjct: 60 NNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLF---HEAIPDPSWKDTVLGFRK 116
Query: 364 MSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
++ EL ++ P D+ YG + ++L++ + +L W ++
Sbjct: 117 LTPREL-DMFP-DYGYGWFHTSLILEGKNYLQWLTER 151
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 118/279 (42%), Gaps = 54/279 (19%)
Query: 459 SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLV 518
+EN G+ +I+GYNL + + K + +++++ EL ++ P D+ YG + ++L+
Sbjct: 84 AENLGLFLISGYNLFH---EAIPDPSWKDTVLGFRKLTPREL-DMFP-DYGYGWFHTSLI 138
Query: 519 IPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNR 578
+ + +L W ++ V+ + S+ + AR G D I+N
Sbjct: 139 LEGKNYLQWLTERLTERGVKFFQRKV-ESFEEV-----------AREGAD-----VIVNC 181
Query: 579 TAAVRPEILAAPVEKVWVGLRPYRHHVRVERDLTGAAQY-LTWYPVFKVYGITSVLFVHR 637
T + P+ L+P R + ++ D + LT P +Y ++ +
Sbjct: 182 TGVWAGALQRDPL------LQPGRGQI-MKVDAPWMKHFILTHDPERGIYNSPYIIPGTQ 234
Query: 638 FKAAGGKVIEKYISSFSELGS--EYNTIFN-CTGL-----GARTLCNDMHVIPVRGQ--- 686
GG + ++SEL + ++NTI+ C L AR + PVR Q
Sbjct: 235 TVTLGGIF---QLGNWSELNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRL 291
Query: 687 ----------TIRIVHNYGHGGYGVTSAPGSARCAVSVF 715
++HNYGHGGYG+T G A A +F
Sbjct: 292 EREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLF 330
>pdb|1C0K|A Chain A, Crystal Structure Analysis Of D-Amino Acid Oxidase In
Complex With L-Lactate
pdb|1C0L|A Chain A, D-Amino Acid Oxidase: Structure Of Substrate Complexes At
Very High Resolution Reveal The Chemical Reacttion
Mechanism Of Flavin Dehydrogenation
pdb|1C0P|A Chain A, D-amino Acic Oxidase In Complex With D-alanine And A
Partially Occupied Biatomic Species
pdb|1C0I|A Chain A, Crystal Structure Of D-Amino Acid Oxidase In Complex With
Two Anthranylate Molecules
Length = 363
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 246 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP---SP 302
+M S +V +LG+G+IGLS+AL L R+ V ++A D +S A + +P
Sbjct: 2 MMHSQKRVVVLGSGVIGLSSALILARK--GYSVHILARDLPEDVSSQTFASPWAGANWTP 59
Query: 303 NFMGPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYK 362
D +W ++ + L+ + + A++E H+ K + P Y+
Sbjct: 60 FMTLTDGPRQAKWEESTFKKWVELVPTGHAMWLKGTRRFAQNEDGLL-GHWYKDITPNYR 118
Query: 363 RMSEEE 368
+ E
Sbjct: 119 PLPSSE 124
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 634 FVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLC--NDMHVIPVRGQTIRI 690
+ G + ++S + + + N TGLGA+++ +D P+RGQT+ +
Sbjct: 148 LARELQKLGATFERRTVTSLEQAFDGADLVVNATGLGAKSIAGIDDQAAEPIRGQTVLV 206
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 542 AYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILA-APVEKVW----- 595
AYIIP GG V GGT G+ L V+ + IL + P I + +E +
Sbjct: 224 AYIIPRPGGEVICGGTYGVGDWDLSVNPETVQRILKHCLRLDPTISSDGTIEGIEVLRHN 283
Query: 596 VGLRPYRH---HVRVER 609
VGLRP R V ER
Sbjct: 284 VGLRPARRGGPRVEAER 300
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 35/66 (53%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
K+ I+GA G+S A+ ++++P ++++I + + S G + F + N +
Sbjct: 4 KIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYI 63
Query: 312 TKEWIR 317
T+E +R
Sbjct: 64 TEEELR 69
>pdb|3IF9|A Chain A, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|B Chain B, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|C Chain C, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|D Chain D, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
Length = 382
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 503 IGPGDWKYGIYMSTLVIPNRIFLP--------WCMQKNFASLVRLAGAYIIPSYGGLVTL 554
+ G W G++ L + N FLP W + YI+P G + +
Sbjct: 213 VASGVWS-GMFFKQLGL-NNAFLPVKGECLSVWNDDIPLTKTLYHDACYIVPRKSGRLVV 270
Query: 555 GGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRP 600
G T G+ D +++ + + P I V++ W GLRP
Sbjct: 271 GATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRP 316
>pdb|1RYI|A Chain A, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|B Chain B, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|C Chain C, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|D Chain D, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
Length = 382
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 543 YIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRP 600
YI+P G + +G T G+ D +++ + + P I V++ W GLRP
Sbjct: 259 YIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWAGLRP 316
>pdb|1NG3|A Chain A, Complex Of Thio (Glycine Oxidase) With Acetyl-Glycine
pdb|1NG3|B Chain B, Complex Of Thio (Glycine Oxidase) With Acetyl-Glycine
pdb|1NG4|A Chain A, Structure Of Thio (Glycine Oxidase) From Bacillus Subtilis
pdb|1NG4|B Chain B, Structure Of Thio (Glycine Oxidase) From Bacillus Subtilis
Length = 390
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 543 YIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRP 600
YI+P G + +G T G+ D +++ + + P I V++ W GLRP
Sbjct: 267 YIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPPIQNMKVDRFWAGLRP 324
>pdb|3FAY|A Chain A, Crystal Structure Of The Gap-Related Domain Of Iqgap1
Length = 387
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 238 QSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKFNMDTTSD 292
Q +N +G N ++I+ LS + + RRF CDV + DKFN+D SD
Sbjct: 275 QHAASNKXFLGDNAHLSIINEY---LSQSYQKFRRFFQTACDVPELQDKFNVDEYSD 328
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Acetate
pdb|1PJ6|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Folic Acid
pdb|1PJ7|A Chain A, Structure Of Dimethylglycine Oxidase Of Arthrobacter
Globiformis In Complex With Folinic Acid
Length = 830
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM--DTTSDGAAGLFEPSPNF 304
M S ++ I+GAGI+G + A EL R N + NM +TS +F+ +P+
Sbjct: 1 MASTPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPS- 59
Query: 305 MGPDLETTKEWIRYSYDHYAGLLSE--NCGVQVINGYNLAKSEKQCAE 350
+T + +Y+ + L + +C QV G +A +E + A+
Sbjct: 60 -----KTMASFAKYTVEKLLSLTEDGVSCFNQV-GGLEVATTETRLAD 101
>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase
(Yp_001813199.1) From Exiguobacterium Sp. 255-15 At 2.06
A Resolution
Length = 475
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
S+ ++ I+G GI GL+ A +R FP+ ++T++
Sbjct: 3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLL 35
>pdb|3PVC|A Chain A, Crystal Structure Of Apo Mnmc From Yersinia Pestis
pdb|3SGL|A Chain A, The Crystal Structure Of Mnmc From Yersinia Pestis Bound
With Fad And Sam
Length = 689
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 205 IKQLNVQVTKVNPKSQTNATQNGDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLS 264
++Q VTKV Q G PT P + +AI+G GI+
Sbjct: 220 LQQAGFNVTKVKGFGQKREXLTGTLPQQIHAPTAPWYHRPAATRCD-DIAIIGGGIVSAL 278
Query: 265 TALELQRR 272
TAL LQRR
Sbjct: 279 TALALQRR 286
>pdb|4IIW|A Chain A, 2.6 Angstrom Crystal Structure Of Putative Yceg-like
Protein Lmo1499 From Listeria Monocytogenes
pdb|4IIW|B Chain B, 2.6 Angstrom Crystal Structure Of Putative Yceg-like
Protein Lmo1499 From Listeria Monocytogenes
Length = 349
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 230 KGLFFIPTQSCPANPKVMGSNHKVAI---LGAGIIGLSTALELQRRFPNCDVTVIADKFN 286
+ L+F PK S K+ + G+ I +ST LE ++ N + K+N
Sbjct: 16 ENLYFQSNAKSQLEPKDEASKEKITVEIPAGSSISDISTILEDKKVINNASIFSFYVKYN 75
Query: 287 MDTTSDGAAGLFEPSP 302
DT + AG +E SP
Sbjct: 76 NDT--NLKAGNYELSP 89
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant
Of Arthrobacter Globiformis In Complex With
Tetrahydrofolate
Length = 827
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM--DTTSDGAAGLFEPSPNFMGPDL 309
++ I+GAGI+G + A EL R N + NM +TS +F+ +P+
Sbjct: 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGLVFQTNPS------ 56
Query: 310 ETTKEWIRYSYDHYAGLLSE--NCGVQVINGYNLAKSEKQCAE 350
+T + +Y+ + L + +C QV G +A +E + A+
Sbjct: 57 KTMASFAKYTVEKLLSLTEDGVSCFNQV-GGLEVATTETRLAD 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,254,661
Number of Sequences: 62578
Number of extensions: 1005092
Number of successful extensions: 2370
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2319
Number of HSP's gapped (non-prelim): 56
length of query: 728
length of database: 14,973,337
effective HSP length: 106
effective length of query: 622
effective length of database: 8,340,069
effective search space: 5187522918
effective search space used: 5187522918
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)