Query psy16975
Match_columns 728
No_of_seqs 577 out of 2835
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 18:29:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16975.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16975hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3923|consensus 100.0 6.5E-48 1.4E-52 394.9 8.0 326 250-722 3-340 (342)
2 PRK01747 mnmC bifunctional tRN 100.0 2.1E-34 4.6E-39 339.7 2.5 350 179-604 198-569 (662)
3 TIGR01373 soxB sarcosine oxida 100.0 3.3E-33 7.1E-38 310.9 5.2 347 225-718 13-385 (407)
4 PRK00711 D-amino acid dehydrog 100.0 4.4E-33 9.5E-38 310.3 2.5 335 252-718 2-402 (416)
5 TIGR03364 HpnW_proposed FAD de 100.0 3.4E-32 7.3E-37 298.3 8.5 310 251-604 1-333 (365)
6 PRK12409 D-amino acid dehydrog 100.0 1.8E-32 3.9E-37 305.3 2.1 344 251-720 2-408 (410)
7 PF01266 DAO: FAD dependent ox 100.0 1.8E-31 3.9E-36 287.7 -0.1 297 252-604 1-320 (358)
8 TIGR03329 Phn_aa_oxid putative 100.0 6.5E-31 1.4E-35 297.7 0.5 340 248-718 22-394 (460)
9 PRK11728 hydroxyglutarate oxid 100.0 1.7E-30 3.8E-35 288.2 3.0 343 250-715 2-393 (393)
10 PRK11259 solA N-methyltryptoph 100.0 3.5E-30 7.7E-35 282.8 1.1 335 249-718 2-360 (376)
11 COG0665 DadA Glycine/D-amino a 100.0 6.1E-29 1.3E-33 273.6 6.6 346 248-721 2-370 (387)
12 TIGR01377 soxA_mon sarcosine o 99.9 7.3E-29 1.6E-33 272.8 3.8 337 251-718 1-360 (380)
13 PRK11101 glpA sn-glycerol-3-ph 99.9 1E-28 2.2E-33 285.1 5.0 299 249-603 5-317 (546)
14 TIGR02352 thiamin_ThiO glycine 99.9 1.5E-28 3.2E-33 265.0 2.4 317 267-717 1-335 (337)
15 PRK13369 glycerol-3-phosphate 99.9 3.9E-28 8.5E-33 277.8 0.4 304 247-604 3-327 (502)
16 KOG2844|consensus 99.9 1.4E-26 3.1E-31 257.6 6.7 295 248-604 37-359 (856)
17 TIGR03197 MnmC_Cterm tRNA U-34 99.9 1E-26 2.2E-31 256.9 2.6 337 265-718 1-362 (381)
18 PRK12266 glpD glycerol-3-phosp 99.9 4.5E-24 9.7E-29 244.7 2.9 304 247-604 3-328 (508)
19 PLN02464 glycerol-3-phosphate 99.9 2E-23 4.4E-28 244.3 5.9 305 249-604 70-407 (627)
20 KOG2853|consensus 99.9 5.2E-23 1.1E-27 214.4 5.6 350 248-717 84-481 (509)
21 COG0579 Predicted dehydrogenas 99.9 9.7E-23 2.1E-27 225.3 7.6 340 249-641 2-365 (429)
22 TIGR03377 glycerol3P_GlpA glyc 99.9 1.5E-22 3.3E-27 232.6 3.8 282 266-604 1-295 (516)
23 COG0578 GlpA Glycerol-3-phosph 99.8 1.5E-20 3.2E-25 211.8 7.7 303 247-604 9-338 (532)
24 KOG2820|consensus 99.8 2E-20 4.3E-25 196.0 5.8 339 247-721 4-381 (399)
25 PTZ00383 malate:quinone oxidor 99.7 2.1E-18 4.5E-23 196.5 6.7 222 247-496 42-296 (497)
26 KOG2852|consensus 99.7 2E-18 4.3E-23 177.3 5.2 341 247-724 7-369 (380)
27 TIGR01320 mal_quin_oxido malat 99.7 2.3E-18 5E-23 196.2 5.3 222 251-496 1-265 (483)
28 KOG2665|consensus 99.7 3.4E-18 7.4E-23 177.2 0.4 357 247-715 45-451 (453)
29 PRK13339 malate:quinone oxidor 99.6 9.9E-17 2.2E-21 182.4 5.7 222 249-496 5-272 (497)
30 PRK05257 malate:quinone oxidor 99.6 9.6E-17 2.1E-21 183.3 5.1 225 248-497 3-272 (494)
31 KOG3923|consensus 99.4 5E-14 1.1E-18 146.0 4.6 54 637-690 160-214 (342)
32 KOG0042|consensus 99.4 6.1E-15 1.3E-19 162.5 -3.7 303 249-605 66-401 (680)
33 KOG1116|consensus 99.3 1.6E-12 3.5E-17 145.5 7.1 71 5-75 494-566 (579)
34 PLN02958 diacylglycerol kinase 98.6 3.6E-08 7.8E-13 112.6 6.2 70 6-76 390-480 (481)
35 TIGR02032 GG-red-SF geranylger 98.5 1.8E-07 3.8E-12 98.7 6.4 59 540-603 195-253 (295)
36 PRK08274 tricarballylate dehyd 98.4 4.8E-08 1E-12 111.3 -1.5 49 247-297 1-51 (466)
37 PRK06481 fumarate reductase fl 98.2 1.5E-07 3.3E-12 108.6 -1.3 50 247-298 58-107 (506)
38 PRK06185 hypothetical protein; 98.2 1.7E-06 3.8E-11 96.5 6.0 37 247-285 3-39 (407)
39 TIGR00551 nadB L-aspartate oxi 98.1 9.9E-07 2.2E-11 101.3 1.8 47 250-299 2-48 (488)
40 PF06039 Mqo: Malate:quinone o 98.0 5.2E-06 1.1E-10 92.5 4.1 222 249-496 2-269 (488)
41 KOG1298|consensus 97.9 3.6E-06 7.8E-11 90.9 1.1 37 247-285 42-78 (509)
42 PRK08401 L-aspartate oxidase; 97.8 6.2E-06 1.3E-10 94.3 0.9 43 251-296 2-44 (466)
43 COG2081 Predicted flavoprotein 97.8 9.8E-06 2.1E-10 88.7 2.0 35 249-285 2-36 (408)
44 PF13450 NAD_binding_8: NAD(P) 97.8 1.7E-05 3.6E-10 66.5 2.8 30 255-286 1-30 (68)
45 COG1635 THI4 Ribulose 1,5-bisp 97.7 3E-05 6.6E-10 78.5 4.1 48 250-300 30-77 (262)
46 TIGR01813 flavo_cyto_c flavocy 97.7 2.7E-05 5.9E-10 88.1 3.7 47 252-300 1-48 (439)
47 PRK07121 hypothetical protein; 97.7 2.8E-05 6.1E-10 89.5 3.7 49 249-299 19-67 (492)
48 PRK07494 2-octaprenyl-6-methox 97.6 2.7E-05 5.8E-10 86.4 3.1 39 246-286 3-41 (388)
49 PRK07512 L-aspartate oxidase; 97.6 1.4E-05 3.1E-10 92.4 0.9 47 248-298 7-54 (513)
50 COG1233 Phytoene dehydrogenase 97.6 3.5E-05 7.5E-10 88.7 3.9 39 249-289 2-40 (487)
51 PLN02204 diacylglycerol kinase 97.6 6.2E-05 1.3E-09 86.9 5.4 70 6-75 526-597 (601)
52 PRK07364 2-octaprenyl-6-methox 97.6 5.5E-05 1.2E-09 84.6 4.7 39 246-286 14-52 (415)
53 PRK08773 2-octaprenyl-3-methyl 97.6 3.9E-05 8.4E-10 85.3 3.2 38 247-286 3-40 (392)
54 COG0644 FixC Dehydrogenases (f 97.5 6.4E-05 1.4E-09 84.1 4.1 49 249-300 2-50 (396)
55 PRK07208 hypothetical protein; 97.5 5.7E-05 1.2E-09 86.4 3.6 37 247-285 1-37 (479)
56 PF01494 FAD_binding_3: FAD bi 97.5 6.1E-05 1.3E-09 81.2 3.5 35 250-286 1-35 (356)
57 PF01946 Thi4: Thi4 family; PD 97.5 5.8E-05 1.2E-09 76.8 3.1 35 249-285 16-50 (230)
58 TIGR00292 thiazole biosynthesi 97.5 7.3E-05 1.6E-09 78.8 3.7 36 249-286 20-55 (254)
59 PF00890 FAD_binding_2: FAD bi 97.5 5.9E-05 1.3E-09 84.5 3.2 47 252-300 1-47 (417)
60 PRK10157 putative oxidoreducta 97.5 7.5E-05 1.6E-09 84.5 4.0 35 249-285 4-38 (428)
61 PRK12837 3-ketosteroid-delta-1 97.5 7.8E-05 1.7E-09 86.4 4.2 50 249-301 6-57 (513)
62 PRK09126 hypothetical protein; 97.5 6E-05 1.3E-09 83.7 3.1 36 249-286 2-37 (392)
63 PRK10015 oxidoreductase; Provi 97.5 7.7E-05 1.7E-09 84.5 4.0 36 249-286 4-39 (429)
64 PRK05714 2-octaprenyl-3-methyl 97.5 5.6E-05 1.2E-09 84.5 2.8 34 250-285 2-35 (405)
65 PRK08850 2-octaprenyl-6-methox 97.5 6.2E-05 1.3E-09 84.3 3.0 35 248-284 2-36 (405)
66 PLN00093 geranylgeranyl diphos 97.5 8.7E-05 1.9E-09 84.6 4.2 38 246-285 35-72 (450)
67 PRK08163 salicylate hydroxylas 97.5 7.5E-05 1.6E-09 83.0 3.4 36 248-285 2-37 (396)
68 PRK08641 sdhA succinate dehydr 97.4 8.7E-05 1.9E-09 87.4 4.0 48 250-299 3-50 (589)
69 PRK08205 sdhA succinate dehydr 97.4 7.5E-05 1.6E-09 87.8 3.3 50 247-299 2-51 (583)
70 TIGR02360 pbenz_hydroxyl 4-hyd 97.4 9E-05 2E-09 82.7 3.7 35 250-286 2-36 (390)
71 PRK08013 oxidoreductase; Provi 97.4 7.5E-05 1.6E-09 83.5 3.1 36 249-286 2-37 (400)
72 PRK05732 2-octaprenyl-6-methox 97.4 7.4E-05 1.6E-09 82.9 2.9 35 249-285 2-39 (395)
73 PRK07803 sdhA succinate dehydr 97.4 0.0001 2.3E-09 87.3 4.0 49 249-299 7-55 (626)
74 PRK08849 2-octaprenyl-3-methyl 97.4 8.8E-05 1.9E-09 82.5 3.1 34 250-285 3-36 (384)
75 PRK07045 putative monooxygenas 97.4 9.3E-05 2E-09 82.2 3.3 37 248-286 3-39 (388)
76 PRK12842 putative succinate de 97.4 9.8E-05 2.1E-09 86.7 3.7 50 249-300 8-57 (574)
77 PRK07608 ubiquinone biosynthes 97.4 8.7E-05 1.9E-09 82.2 3.0 36 249-286 4-39 (388)
78 PRK08020 ubiF 2-octaprenyl-3-m 97.4 9.1E-05 2E-09 82.3 3.0 36 248-285 3-38 (391)
79 PRK07804 L-aspartate oxidase; 97.4 0.0001 2.2E-09 86.0 3.3 49 248-298 14-62 (541)
80 PRK07843 3-ketosteroid-delta-1 97.4 0.00013 2.8E-09 85.4 4.1 51 246-298 3-53 (557)
81 PRK05945 sdhA succinate dehydr 97.4 9.6E-05 2.1E-09 86.8 3.0 52 249-300 2-54 (575)
82 PRK07236 hypothetical protein; 97.4 0.00012 2.5E-09 81.5 3.4 35 249-285 5-39 (386)
83 PRK06452 sdhA succinate dehydr 97.3 0.00012 2.7E-09 85.7 3.6 49 249-299 4-52 (566)
84 PRK12835 3-ketosteroid-delta-1 97.3 0.00011 2.3E-09 86.5 3.0 49 248-298 9-57 (584)
85 PRK08243 4-hydroxybenzoate 3-m 97.3 0.00014 2.9E-09 81.2 3.7 35 250-286 2-36 (392)
86 PRK07057 sdhA succinate dehydr 97.3 0.00016 3.5E-09 85.1 4.2 50 248-299 10-59 (591)
87 PRK04176 ribulose-1,5-biphosph 97.3 0.00018 3.9E-09 76.0 4.0 36 249-286 24-59 (257)
88 PRK06069 sdhA succinate dehydr 97.3 0.00015 3.2E-09 85.3 3.6 49 248-298 3-54 (577)
89 PTZ00139 Succinate dehydrogena 97.3 0.00014 3.1E-09 86.0 3.5 49 249-299 28-76 (617)
90 TIGR02730 carot_isom carotene 97.3 0.00014 2.9E-09 83.9 3.2 36 251-288 1-36 (493)
91 PRK12844 3-ketosteroid-delta-1 97.3 0.00015 3.3E-09 84.8 3.6 48 249-298 5-52 (557)
92 PLN02576 protoporphyrinogen ox 97.3 0.00017 3.6E-09 82.9 3.9 36 248-285 10-46 (496)
93 PRK06847 hypothetical protein; 97.3 0.00016 3.4E-09 79.7 3.4 36 248-285 2-37 (375)
94 PRK09078 sdhA succinate dehydr 97.3 0.00015 3.2E-09 85.6 3.4 49 249-299 11-59 (598)
95 COG0654 UbiH 2-polyprenyl-6-me 97.3 0.00016 3.4E-09 80.7 3.3 33 250-284 2-34 (387)
96 TIGR02023 BchP-ChlP geranylger 97.3 0.00015 3.3E-09 80.8 3.1 32 251-284 1-32 (388)
97 PRK12834 putative FAD-binding 97.3 0.00017 3.8E-09 84.1 3.7 48 248-297 2-51 (549)
98 PRK08958 sdhA succinate dehydr 97.3 0.00015 3.2E-09 85.4 3.1 48 249-298 6-53 (588)
99 PRK06834 hypothetical protein; 97.3 0.00019 4.2E-09 82.6 3.9 36 249-286 2-37 (488)
100 PLN00128 Succinate dehydrogena 97.3 0.00014 3.1E-09 86.2 2.9 49 249-299 49-97 (635)
101 TIGR01988 Ubi-OHases Ubiquinon 97.3 0.00014 3.1E-09 80.0 2.7 33 252-286 1-33 (385)
102 TIGR02485 CobZ_N-term precorri 97.3 2.9E-05 6.3E-10 87.8 -2.8 30 255-286 1-30 (432)
103 PRK06126 hypothetical protein; 97.3 0.00017 3.7E-09 84.0 3.4 37 247-285 4-40 (545)
104 PRK13059 putative lipid kinase 97.2 0.00039 8.5E-09 74.8 5.8 68 6-74 223-291 (295)
105 PRK07233 hypothetical protein; 97.2 0.00018 3.8E-09 80.6 3.2 33 252-286 1-33 (434)
106 KOG0029|consensus 97.2 0.0002 4.3E-09 82.4 3.6 38 248-287 13-51 (501)
107 PRK06370 mercuric reductase; V 97.2 0.00022 4.8E-09 81.4 3.9 41 247-289 2-42 (463)
108 PRK11883 protoporphyrinogen ox 97.2 0.00019 4.1E-09 81.0 3.3 32 252-285 2-35 (451)
109 COG3380 Predicted NAD/FAD-depe 97.2 0.0002 4.3E-09 74.7 3.1 32 252-285 3-34 (331)
110 COG3349 Uncharacterized conser 97.2 0.00021 4.5E-09 80.8 3.4 33 252-286 2-34 (485)
111 PLN02985 squalene monooxygenas 97.2 0.00022 4.7E-09 82.7 3.6 37 247-285 40-76 (514)
112 TIGR00562 proto_IX_ox protopor 97.2 0.00021 4.4E-09 81.3 3.4 35 251-285 3-39 (462)
113 PRK08626 fumarate reductase fl 97.2 0.00017 3.8E-09 85.8 2.7 46 249-296 4-49 (657)
114 PRK08010 pyridine nucleotide-d 97.2 0.00022 4.7E-09 80.9 3.4 35 249-285 2-36 (441)
115 TIGR01812 sdhA_frdA_Gneg succi 97.2 0.00022 4.8E-09 83.5 3.4 43 252-296 1-43 (566)
116 PRK06184 hypothetical protein; 97.2 0.00026 5.7E-09 81.7 3.9 35 249-285 2-36 (502)
117 PRK07333 2-octaprenyl-6-methox 97.2 0.00024 5.2E-09 79.1 3.3 34 250-285 1-36 (403)
118 PRK09231 fumarate reductase fl 97.2 0.00025 5.5E-09 83.4 3.6 51 249-299 3-53 (582)
119 PLN02268 probable polyamine ox 97.2 0.00024 5.2E-09 80.2 3.2 32 252-285 2-33 (435)
120 TIGR01984 UbiH 2-polyprenyl-6- 97.2 0.00021 4.5E-09 79.0 2.6 33 252-286 1-34 (382)
121 PRK11445 putative oxidoreducta 97.2 0.0003 6.5E-09 77.4 3.8 32 251-285 2-33 (351)
122 PRK12839 hypothetical protein; 97.1 0.00032 7E-09 82.3 4.2 52 247-300 5-57 (572)
123 PRK08244 hypothetical protein; 97.1 0.00028 6E-09 81.2 3.6 34 250-285 2-35 (493)
124 PLN02815 L-aspartate oxidase 97.1 0.00023 5.1E-09 83.7 3.0 48 248-298 27-74 (594)
125 PRK06753 hypothetical protein; 97.1 0.00026 5.6E-09 78.0 3.2 33 252-286 2-34 (373)
126 PRK05249 soluble pyridine nucl 97.1 0.00033 7.1E-09 79.9 4.0 36 247-284 2-37 (461)
127 TIGR01176 fum_red_Fp fumarate 97.1 0.00031 6.6E-09 82.6 3.8 50 250-299 3-52 (580)
128 PRK06175 L-aspartate oxidase; 97.1 0.00021 4.6E-09 81.1 2.4 49 248-299 2-50 (433)
129 PRK06617 2-octaprenyl-6-methox 97.1 0.00024 5.3E-09 78.7 2.8 33 251-285 2-34 (374)
130 PRK12845 3-ketosteroid-delta-1 97.1 0.00042 9E-09 81.2 4.8 50 248-300 14-64 (564)
131 PRK13337 putative lipid kinase 97.1 0.00061 1.3E-08 73.6 5.8 73 6-79 225-297 (304)
132 PRK09077 L-aspartate oxidase; 97.1 0.0003 6.6E-09 81.9 3.5 48 249-299 7-54 (536)
133 PLN02661 Putative thiazole syn 97.1 0.00033 7E-09 76.9 3.4 37 249-286 91-127 (357)
134 PRK07588 hypothetical protein; 97.1 0.00029 6.3E-09 78.4 3.0 32 252-285 2-33 (391)
135 PRK07395 L-aspartate oxidase; 97.1 0.00031 6.8E-09 82.1 3.3 48 248-298 7-54 (553)
136 TIGR01292 TRX_reduct thioredox 97.1 0.00034 7.4E-09 74.1 3.3 34 251-286 1-34 (300)
137 TIGR02733 desat_CrtD C-3',4' d 97.1 0.00035 7.5E-09 80.4 3.6 36 251-288 2-38 (492)
138 COG1232 HemY Protoporphyrinoge 97.1 0.00037 8E-09 78.8 3.6 33 252-284 2-34 (444)
139 PRK08071 L-aspartate oxidase; 97.1 0.00035 7.6E-09 80.9 3.5 47 250-299 3-49 (510)
140 PRK07573 sdhA succinate dehydr 97.0 0.00031 6.7E-09 83.5 2.8 48 249-298 34-83 (640)
141 PRK07538 hypothetical protein; 97.0 0.00034 7.5E-09 78.5 3.0 33 251-285 1-33 (413)
142 PRK06116 glutathione reductase 97.0 0.00036 7.9E-09 79.3 3.2 38 248-287 2-39 (450)
143 PRK05868 hypothetical protein; 97.0 0.0004 8.6E-09 77.1 3.1 33 251-285 2-34 (372)
144 PLN02568 polyamine oxidase 97.0 0.00044 9.5E-09 80.6 3.6 38 246-285 1-43 (539)
145 KOG2614|consensus 97.0 0.0005 1.1E-08 75.7 3.6 37 250-288 2-38 (420)
146 TIGR02734 crtI_fam phytoene de 97.0 0.00036 7.9E-09 80.4 2.7 32 253-286 1-32 (502)
147 PTZ00367 squalene epoxidase; P 97.0 0.00045 9.8E-09 80.9 3.3 35 249-285 32-66 (567)
148 PRK07190 hypothetical protein; 97.0 0.00053 1.2E-08 79.0 3.9 36 248-285 3-38 (487)
149 PRK07818 dihydrolipoamide dehy 97.0 0.00054 1.2E-08 78.3 3.9 38 249-288 3-40 (466)
150 PRK06263 sdhA succinate dehydr 97.0 0.00047 1E-08 80.5 3.4 47 249-298 6-53 (543)
151 PRK13057 putative lipid kinase 97.0 0.0012 2.6E-08 70.7 6.2 68 6-74 216-283 (287)
152 TIGR02061 aprA adenosine phosp 97.0 0.00053 1.1E-08 81.0 3.6 43 252-297 1-47 (614)
153 TIGR03143 AhpF_homolog putativ 96.9 0.00053 1.2E-08 80.2 3.6 38 248-287 2-39 (555)
154 TIGR00147 lipid kinase, YegS/R 96.9 0.0011 2.3E-08 71.1 5.6 67 6-73 226-292 (293)
155 COG1053 SdhA Succinate dehydro 96.9 0.00055 1.2E-08 79.9 3.5 52 247-300 3-55 (562)
156 PRK13055 putative lipid kinase 96.9 0.0011 2.4E-08 72.6 5.7 69 6-74 229-299 (334)
157 TIGR00031 UDP-GALP_mutase UDP- 96.9 0.00057 1.2E-08 76.1 3.3 33 251-285 2-34 (377)
158 TIGR02028 ChlP geranylgeranyl 96.9 0.00056 1.2E-08 76.7 3.2 33 251-285 1-33 (398)
159 PRK05335 tRNA (uracil-5-)-meth 96.9 0.00058 1.3E-08 76.7 3.2 33 251-285 3-35 (436)
160 TIGR00136 gidA glucose-inhibit 96.9 0.00033 7.1E-09 81.8 1.2 32 251-284 1-32 (617)
161 PRK08132 FAD-dependent oxidore 96.9 0.00058 1.3E-08 79.7 3.3 36 248-285 21-56 (547)
162 TIGR01790 carotene-cycl lycope 96.9 0.0005 1.1E-08 76.3 2.7 32 252-285 1-32 (388)
163 PRK00861 putative lipid kinase 96.9 0.0014 3.1E-08 70.6 6.1 68 6-74 224-295 (300)
164 PRK06475 salicylate hydroxylas 96.9 0.00058 1.3E-08 76.3 3.2 33 251-285 3-35 (400)
165 PRK06134 putative FAD-binding 96.9 0.00068 1.5E-08 79.8 3.9 49 247-297 9-57 (581)
166 PRK05976 dihydrolipoamide dehy 96.9 0.00063 1.4E-08 77.9 3.5 39 247-287 1-39 (472)
167 PRK06996 hypothetical protein; 96.9 0.0006 1.3E-08 76.2 3.2 39 246-286 7-49 (398)
168 PRK11914 diacylglycerol kinase 96.9 0.0013 2.7E-08 71.2 5.6 67 6-74 236-302 (306)
169 TIGR01989 COQ6 Ubiquinone bios 96.9 0.00053 1.2E-08 77.7 2.6 35 251-285 1-37 (437)
170 PRK12416 protoporphyrinogen ox 96.9 0.00063 1.4E-08 77.6 3.2 34 252-285 3-40 (463)
171 TIGR01350 lipoamide_DH dihydro 96.9 0.00066 1.4E-08 77.3 3.3 37 250-288 1-37 (461)
172 PLN02463 lycopene beta cyclase 96.8 0.00067 1.5E-08 77.3 3.1 35 249-285 27-61 (447)
173 PRK06292 dihydrolipoamide dehy 96.8 0.00074 1.6E-08 77.0 3.4 37 249-287 2-38 (460)
174 TIGR01421 gluta_reduc_1 glutat 96.8 0.00071 1.5E-08 77.1 3.2 36 250-287 2-37 (450)
175 PF03486 HI0933_like: HI0933-l 96.8 0.00059 1.3E-08 76.8 2.5 33 251-285 1-33 (409)
176 TIGR01424 gluta_reduc_2 glutat 96.8 0.00076 1.7E-08 76.7 3.3 36 250-287 2-37 (446)
177 PLN02927 antheraxanthin epoxid 96.8 0.00073 1.6E-08 80.1 3.1 36 248-285 79-114 (668)
178 KOG2960|consensus 96.8 0.00055 1.2E-08 69.0 1.8 50 250-300 76-125 (328)
179 PRK07251 pyridine nucleotide-d 96.8 0.00078 1.7E-08 76.4 3.2 35 249-285 2-36 (438)
180 PRK06854 adenylylsulfate reduc 96.8 0.0008 1.7E-08 79.6 3.4 37 249-287 10-48 (608)
181 PLN02172 flavin-containing mon 96.8 0.00087 1.9E-08 76.7 3.5 36 248-285 8-43 (461)
182 PRK06183 mhpA 3-(3-hydroxyphen 96.8 0.0008 1.7E-08 78.4 3.2 36 248-285 8-43 (538)
183 TIGR02731 phytoene_desat phyto 96.8 0.00083 1.8E-08 76.3 3.2 32 252-285 1-32 (453)
184 PRK08294 phenol 2-monooxygenas 96.8 0.00096 2.1E-08 79.3 3.7 37 247-285 29-66 (634)
185 PTZ00363 rab-GDP dissociation 96.7 0.001 2.2E-08 75.7 3.6 38 247-286 1-38 (443)
186 PRK13977 myosin-cross-reactive 96.7 0.0012 2.6E-08 76.6 4.2 39 249-287 21-61 (576)
187 PTZ00306 NADH-dependent fumara 96.7 0.001 2.2E-08 84.2 3.7 49 248-298 407-455 (1167)
188 PF05834 Lycopene_cycl: Lycope 96.7 0.00084 1.8E-08 74.6 2.5 32 252-285 1-34 (374)
189 PLN02697 lycopene epsilon cycl 96.7 0.00098 2.1E-08 77.4 3.1 35 249-285 107-141 (529)
190 PF00732 GMC_oxred_N: GMC oxid 96.7 0.001 2.2E-08 71.0 2.9 33 251-285 1-34 (296)
191 PRK05329 anaerobic glycerol-3- 96.7 0.0011 2.5E-08 74.8 3.4 34 250-285 2-35 (422)
192 PRK12843 putative FAD-binding 96.7 0.0013 2.8E-08 77.4 3.9 48 249-298 15-62 (578)
193 TIGR03219 salicylate_mono sali 96.6 0.0011 2.5E-08 74.3 3.0 32 252-285 2-34 (414)
194 PF12831 FAD_oxidored: FAD dep 96.6 0.0013 2.7E-08 74.6 3.3 33 252-286 1-33 (428)
195 KOG1276|consensus 96.6 0.0015 3.2E-08 72.2 3.5 38 248-285 9-46 (491)
196 COG0492 TrxB Thioredoxin reduc 96.6 0.0014 3E-08 71.0 3.3 37 249-287 2-39 (305)
197 PRK14694 putative mercuric red 96.6 0.0014 3.1E-08 74.9 3.7 38 248-287 4-41 (468)
198 KOG1399|consensus 96.6 0.0015 3.3E-08 74.1 3.5 36 248-285 4-39 (448)
199 PRK08275 putative oxidoreducta 96.6 0.0013 2.8E-08 77.1 3.0 39 249-287 8-46 (554)
200 TIGR02732 zeta_caro_desat caro 96.6 0.0014 3E-08 75.3 3.2 32 252-285 1-32 (474)
201 COG3075 GlpB Anaerobic glycero 96.6 0.0017 3.6E-08 69.6 3.4 35 249-285 1-35 (421)
202 PRK06467 dihydrolipoamide dehy 96.5 0.0019 4.1E-08 74.1 4.2 35 248-284 2-36 (471)
203 COG0029 NadB Aspartate oxidase 96.5 0.0013 2.9E-08 73.9 2.8 46 252-300 9-54 (518)
204 PRK05192 tRNA uridine 5-carbox 96.5 0.0015 3.2E-08 76.5 3.3 35 248-284 2-36 (618)
205 PRK06416 dihydrolipoamide dehy 96.5 0.0017 3.6E-08 74.2 3.5 36 249-286 3-38 (462)
206 TIGR01789 lycopene_cycl lycope 96.5 0.0016 3.4E-08 72.4 3.2 34 252-285 1-34 (370)
207 PRK02106 choline dehydrogenase 96.5 0.0016 3.4E-08 76.3 3.2 38 247-285 2-39 (560)
208 PTZ00058 glutathione reductase 96.5 0.0022 4.8E-08 75.1 4.2 39 248-288 46-84 (561)
209 PF07992 Pyr_redox_2: Pyridine 96.5 0.0018 3.8E-08 64.5 2.9 31 252-284 1-31 (201)
210 TIGR01811 sdhA_Bsu succinate d 96.5 0.0014 3.1E-08 77.4 2.6 42 253-296 1-43 (603)
211 TIGR02053 MerA mercuric reduct 96.5 0.0018 3.9E-08 74.0 3.3 36 251-288 1-36 (463)
212 PRK10262 thioredoxin reductase 96.5 0.002 4.4E-08 69.7 3.4 37 248-286 4-40 (321)
213 COG2907 Predicted NAD/FAD-bind 96.4 0.0024 5.1E-08 68.9 3.7 34 249-285 7-40 (447)
214 TIGR00137 gid_trmFO tRNA:m(5)U 96.4 0.0018 3.9E-08 73.1 2.9 32 252-285 2-33 (433)
215 PRK06327 dihydrolipoamide dehy 96.4 0.0024 5.2E-08 73.3 4.0 34 248-283 2-35 (475)
216 PF13738 Pyr_redox_3: Pyridine 96.4 0.002 4.4E-08 64.4 2.9 30 254-285 1-31 (203)
217 COG1231 Monoamine oxidase [Ami 96.4 0.0021 4.7E-08 71.7 3.3 36 248-285 5-40 (450)
218 PRK12831 putative oxidoreducta 96.4 0.0026 5.6E-08 72.9 4.0 36 248-285 138-173 (464)
219 PRK06115 dihydrolipoamide dehy 96.4 0.0025 5.3E-08 73.1 3.7 37 249-287 2-39 (466)
220 PLN02676 polyamine oxidase 96.4 0.0023 5E-08 73.8 3.4 36 248-285 24-60 (487)
221 COG2303 BetA Choline dehydroge 96.4 0.0024 5.2E-08 74.6 3.6 37 247-285 4-40 (542)
222 PRK13800 putative oxidoreducta 96.4 0.0022 4.8E-08 79.2 3.4 37 249-287 12-48 (897)
223 TIGR03315 Se_ygfK putative sel 96.3 0.0025 5.4E-08 78.7 3.5 35 249-285 536-570 (1012)
224 COG2072 TrkA Predicted flavopr 96.3 0.0029 6.2E-08 72.1 3.7 37 247-285 5-42 (443)
225 PRK13748 putative mercuric red 96.3 0.0026 5.7E-08 74.4 3.4 37 249-287 97-133 (561)
226 PF00070 Pyr_redox: Pyridine n 96.3 0.0035 7.6E-08 53.8 3.1 32 252-285 1-32 (80)
227 TIGR01316 gltA glutamate synth 96.2 0.0037 8E-08 71.3 4.0 36 248-285 131-166 (449)
228 PLN02612 phytoene desaturase 96.2 0.0033 7.1E-08 73.9 3.6 35 249-285 92-126 (567)
229 PRK12779 putative bifunctional 96.1 0.0039 8.4E-08 77.2 3.7 34 250-285 306-339 (944)
230 PLN02328 lysine-specific histo 96.1 0.0039 8.5E-08 75.4 3.4 35 249-285 237-271 (808)
231 COG1148 HdrA Heterodisulfide r 96.1 0.0039 8.5E-08 69.8 3.1 35 249-285 123-157 (622)
232 TIGR03378 glycerol3P_GlpB glyc 96.0 0.003 6.4E-08 71.1 1.9 47 251-299 1-47 (419)
233 PLN02487 zeta-carotene desatur 96.0 0.0047 1E-07 72.4 3.5 35 250-286 75-109 (569)
234 PRK15317 alkyl hydroperoxide r 96.0 0.0045 9.9E-08 71.8 3.2 35 248-284 209-243 (517)
235 PRK13054 lipid kinase; Reviewe 95.9 0.01 2.2E-07 64.1 5.4 65 9-74 228-292 (300)
236 PLN02852 ferredoxin-NADP+ redu 95.9 0.0071 1.5E-07 69.6 4.4 37 249-285 25-61 (491)
237 PRK12810 gltD glutamate syntha 95.9 0.0066 1.4E-07 69.6 4.0 36 248-285 141-176 (471)
238 COG0562 Glf UDP-galactopyranos 95.9 0.0068 1.5E-07 65.0 3.6 36 251-288 2-38 (374)
239 PLN02507 glutathione reductase 95.8 0.0069 1.5E-07 70.1 3.9 34 248-283 23-56 (499)
240 TIGR03140 AhpF alkyl hydropero 95.8 0.0055 1.2E-07 71.1 3.1 35 248-284 210-244 (515)
241 PTZ00052 thioredoxin reductase 95.8 0.0056 1.2E-07 70.8 3.1 34 249-284 4-37 (499)
242 PRK12769 putative oxidoreducta 95.8 0.0065 1.4E-07 72.6 3.6 35 249-285 326-360 (654)
243 TIGR00275 flavoprotein, HI0933 95.8 0.0053 1.2E-07 68.9 2.8 31 254-286 1-31 (400)
244 PRK06567 putative bifunctional 95.8 0.006 1.3E-07 74.6 3.2 35 248-284 381-415 (1028)
245 PRK09853 putative selenate red 95.8 0.0066 1.4E-07 74.9 3.5 35 249-285 538-572 (1019)
246 PF00743 FMO-like: Flavin-bind 95.7 0.0073 1.6E-07 70.3 3.7 41 251-300 2-42 (531)
247 PRK12778 putative bifunctional 95.7 0.0073 1.6E-07 73.4 3.8 35 249-285 430-464 (752)
248 TIGR01372 soxA sarcosine oxida 95.7 0.008 1.7E-07 75.1 4.2 36 249-286 162-197 (985)
249 PRK08255 salicylyl-CoA 5-hydro 95.7 0.0059 1.3E-07 74.3 2.9 35 252-286 2-36 (765)
250 PRK11749 dihydropyrimidine deh 95.7 0.0075 1.6E-07 68.9 3.6 35 249-285 139-173 (457)
251 PRK12775 putative trifunctiona 95.7 0.008 1.7E-07 75.0 3.9 35 249-285 429-463 (1006)
252 PLN02529 lysine-specific histo 95.6 0.0078 1.7E-07 72.4 3.4 35 249-285 159-193 (738)
253 COG3573 Predicted oxidoreducta 95.6 0.0085 1.8E-07 64.3 3.3 50 249-300 4-56 (552)
254 TIGR02462 pyranose_ox pyranose 95.6 0.0093 2E-07 69.4 3.9 46 251-300 1-46 (544)
255 PRK12814 putative NADPH-depend 95.5 0.01 2.2E-07 70.9 3.8 35 249-285 192-226 (652)
256 PRK14727 putative mercuric red 95.5 0.0093 2E-07 68.6 3.2 38 248-287 14-52 (479)
257 PTZ00153 lipoamide dehydrogena 95.4 0.011 2.3E-07 70.6 3.3 34 249-284 115-148 (659)
258 PLN02546 glutathione reductase 95.4 0.011 2.4E-07 69.3 3.3 33 249-283 78-110 (558)
259 PF01134 GIDA: Glucose inhibit 95.3 0.0099 2.1E-07 66.3 2.7 28 252-281 1-28 (392)
260 TIGR01318 gltD_gamma_fam gluta 95.3 0.015 3.2E-07 66.8 4.2 35 249-285 140-174 (467)
261 PRK12809 putative oxidoreducta 95.3 0.015 3.3E-07 69.3 4.3 35 249-285 309-343 (639)
262 PRK12770 putative glutamate sy 95.3 0.015 3.4E-07 63.9 4.0 35 249-285 17-51 (352)
263 COG1249 Lpd Pyruvate/2-oxoglut 95.2 0.014 3E-07 66.7 3.4 38 248-287 2-40 (454)
264 TIGR01438 TGR thioredoxin and 95.2 0.015 3.2E-07 67.1 3.6 34 250-285 2-35 (484)
265 PF04820 Trp_halogenase: Trypt 95.2 0.014 3E-07 66.8 3.3 36 252-287 1-37 (454)
266 PRK06912 acoL dihydrolipoamide 95.1 0.015 3.3E-07 66.4 3.5 34 252-287 2-35 (458)
267 PLN03000 amine oxidase 95.1 0.016 3.4E-07 70.5 3.5 35 249-285 183-217 (881)
268 TIGR01423 trypano_reduc trypan 95.0 0.015 3.3E-07 67.0 3.2 34 249-284 2-36 (486)
269 KOG0685|consensus 95.0 0.019 4.2E-07 64.5 3.8 36 248-284 19-54 (498)
270 TIGR01810 betA choline dehydro 95.0 0.015 3.2E-07 67.8 2.9 32 252-285 1-33 (532)
271 TIGR01317 GOGAT_sm_gam glutama 95.0 0.017 3.8E-07 66.5 3.3 34 250-285 143-176 (485)
272 KOG2415|consensus 94.8 0.023 5.1E-07 62.7 3.6 52 248-300 74-129 (621)
273 PTZ00188 adrenodoxin reductase 94.7 0.024 5.2E-07 65.0 3.7 37 250-287 39-75 (506)
274 PRK09564 coenzyme A disulfide 94.7 0.022 4.9E-07 64.5 3.4 34 252-285 2-35 (444)
275 KOG4254|consensus 94.7 0.026 5.6E-07 63.0 3.6 36 248-285 12-47 (561)
276 PRK12771 putative glutamate sy 94.7 0.025 5.5E-07 66.4 3.8 35 249-285 136-170 (564)
277 PRK13512 coenzyme A disulfide 94.6 0.025 5.5E-07 64.2 3.4 34 252-285 3-36 (438)
278 KOG4716|consensus 94.5 0.037 7.9E-07 59.7 4.2 51 248-300 17-68 (503)
279 PF13454 NAD_binding_9: FAD-NA 94.5 0.027 5.8E-07 54.8 2.8 33 254-286 1-36 (156)
280 PRK13984 putative oxidoreducta 94.4 0.035 7.5E-07 65.8 4.0 37 248-286 281-317 (604)
281 PRK07845 flavoprotein disulfid 94.3 0.03 6.6E-07 64.1 3.4 33 252-286 3-35 (466)
282 PRK09754 phenylpropionate diox 94.2 0.032 6.8E-07 62.5 3.2 36 250-285 3-38 (396)
283 COG1597 LCB5 Sphingosine kinas 94.2 0.08 1.7E-06 57.4 6.1 70 7-77 228-297 (301)
284 PRK09897 hypothetical protein; 94.2 0.036 7.7E-07 64.6 3.6 39 251-289 2-41 (534)
285 PLN02976 amine oxidase 94.1 0.036 7.8E-07 70.0 3.5 35 249-285 692-726 (1713)
286 PF02737 3HCDH_N: 3-hydroxyacy 94.1 0.035 7.7E-07 55.5 2.8 32 252-285 1-32 (180)
287 PTZ00318 NADH dehydrogenase-li 94.0 0.039 8.4E-07 62.5 3.3 36 248-285 8-43 (424)
288 PRK04965 NADH:flavorubredoxin 93.9 0.041 9E-07 61.0 3.3 35 251-285 3-37 (377)
289 PLN02785 Protein HOTHEAD 93.8 0.038 8.2E-07 65.3 2.9 35 248-285 53-87 (587)
290 PF03721 UDPG_MGDP_dh_N: UDP-g 93.7 0.05 1.1E-06 54.7 3.0 33 251-285 1-33 (185)
291 TIGR03702 lip_kinase_YegS lipi 93.7 0.12 2.5E-06 55.7 6.0 63 9-74 224-286 (293)
292 PF02558 ApbA: Ketopantoate re 93.6 0.051 1.1E-06 52.0 2.8 31 253-285 1-31 (151)
293 KOG1238|consensus 93.3 0.063 1.4E-06 62.6 3.4 40 247-287 54-93 (623)
294 PRK06249 2-dehydropantoate 2-r 93.2 0.069 1.5E-06 57.9 3.5 35 249-285 4-38 (313)
295 PRK07819 3-hydroxybutyryl-CoA 93.2 0.071 1.5E-06 57.2 3.5 33 251-285 6-38 (286)
296 KOG1800|consensus 93.1 0.085 1.8E-06 57.9 3.9 38 250-287 20-57 (468)
297 COG1206 Gid NAD(FAD)-utilizing 93.1 0.082 1.8E-06 57.0 3.6 34 250-285 3-36 (439)
298 PRK06129 3-hydroxyacyl-CoA deh 92.9 0.07 1.5E-06 57.8 3.0 32 252-285 4-35 (308)
299 PRK07846 mycothione reductase; 92.9 0.072 1.6E-06 60.8 3.1 35 250-288 1-35 (451)
300 COG0493 GltD NADPH-dependent g 92.8 0.073 1.6E-06 60.9 3.0 53 226-285 104-156 (457)
301 PRK07530 3-hydroxybutyryl-CoA 92.6 0.093 2E-06 56.3 3.4 34 250-285 4-37 (292)
302 TIGR03452 mycothione_red mycot 92.5 0.085 1.8E-06 60.3 3.1 34 250-287 2-35 (452)
303 PF01210 NAD_Gly3P_dh_N: NAD-d 92.3 0.09 1.9E-06 51.2 2.5 32 252-285 1-32 (157)
304 KOG2404|consensus 92.0 0.14 3.1E-06 55.0 3.7 38 252-291 11-48 (477)
305 PRK05708 2-dehydropantoate 2-r 91.8 0.13 2.8E-06 55.7 3.3 32 251-284 3-34 (305)
306 PRK07066 3-hydroxybutyryl-CoA 91.8 0.14 3E-06 56.0 3.5 33 251-285 8-40 (321)
307 TIGR03169 Nterm_to_SelD pyridi 91.7 0.1 2.2E-06 57.5 2.5 34 252-285 1-35 (364)
308 COG0445 GidA Flavin-dependent 91.5 0.15 3.2E-06 58.6 3.3 36 248-285 2-37 (621)
309 PRK08229 2-dehydropantoate 2-r 91.5 0.15 3.1E-06 55.9 3.2 33 251-285 3-35 (341)
310 PRK08293 3-hydroxybutyryl-CoA 91.4 0.15 3.3E-06 54.6 3.3 33 251-285 4-36 (287)
311 PRK09260 3-hydroxybutyryl-CoA 91.2 0.15 3.3E-06 54.6 3.0 32 252-285 3-34 (288)
312 TIGR02354 thiF_fam2 thiamine b 90.7 0.18 3.8E-06 51.4 2.8 36 250-287 21-57 (200)
313 PLN02545 3-hydroxybutyryl-CoA 90.5 0.21 4.6E-06 53.6 3.4 33 251-285 5-37 (295)
314 PF06100 Strep_67kDa_ant: Stre 90.4 0.25 5.3E-06 56.5 3.8 40 251-290 3-44 (500)
315 COG0569 TrkA K+ transport syst 90.4 0.22 4.8E-06 51.6 3.2 32 252-285 2-33 (225)
316 PRK05808 3-hydroxybutyryl-CoA 90.3 0.22 4.8E-06 53.1 3.3 32 252-285 5-36 (282)
317 COG1252 Ndh NADH dehydrogenase 90.3 0.21 4.6E-06 56.1 3.2 36 250-285 3-38 (405)
318 PRK12921 2-dehydropantoate 2-r 90.1 0.22 4.8E-06 53.4 3.1 30 252-283 2-31 (305)
319 COG0446 HcaD Uncharacterized N 90.0 0.22 4.7E-06 54.9 3.0 34 250-285 136-169 (415)
320 COG4529 Uncharacterized protei 89.9 0.24 5.2E-06 56.2 3.2 35 251-285 2-37 (474)
321 PRK14618 NAD(P)H-dependent gly 89.6 0.27 5.9E-06 53.6 3.4 33 251-285 5-37 (328)
322 PRK06522 2-dehydropantoate 2-r 89.6 0.26 5.6E-06 52.7 3.1 31 252-284 2-32 (304)
323 COG1004 Ugd Predicted UDP-gluc 89.6 0.25 5.5E-06 54.8 3.0 33 251-285 1-33 (414)
324 PRK06130 3-hydroxybutyryl-CoA 89.5 0.29 6.3E-06 52.9 3.4 33 251-285 5-37 (311)
325 PRK12361 hypothetical protein; 89.5 0.4 8.6E-06 56.3 4.7 65 9-74 474-540 (547)
326 PRK01438 murD UDP-N-acetylmura 89.4 0.27 5.8E-06 56.5 3.3 32 251-284 17-48 (480)
327 PRK11064 wecC UDP-N-acetyl-D-m 89.4 0.3 6.5E-06 55.3 3.6 33 251-285 4-36 (415)
328 PRK06035 3-hydroxyacyl-CoA deh 89.3 0.3 6.5E-06 52.4 3.3 33 251-285 4-36 (291)
329 TIGR01763 MalateDH_bact malate 89.1 0.3 6.5E-06 53.0 3.2 32 251-284 2-34 (305)
330 KOG2755|consensus 88.7 0.35 7.6E-06 50.9 3.1 32 253-284 2-33 (334)
331 PRK09754 phenylpropionate diox 88.6 0.31 6.7E-06 54.6 3.0 33 251-285 145-177 (396)
332 PRK07531 bifunctional 3-hydrox 88.6 0.35 7.7E-06 56.0 3.5 32 252-285 6-37 (495)
333 cd05292 LDH_2 A subgroup of L- 88.5 0.34 7.5E-06 52.6 3.2 32 252-285 2-35 (308)
334 TIGR03026 NDP-sugDHase nucleot 88.3 0.39 8.5E-06 54.2 3.5 32 252-285 2-33 (411)
335 PRK07688 thiamine/molybdopteri 88.2 0.37 8E-06 53.1 3.1 36 250-287 24-60 (339)
336 PF00996 GDI: GDP dissociation 87.7 0.39 8.4E-06 54.7 3.0 39 247-287 1-39 (438)
337 PRK14989 nitrite reductase sub 87.7 0.41 8.8E-06 59.1 3.4 36 250-285 3-40 (847)
338 PF00899 ThiF: ThiF family; I 87.7 0.48 1E-05 44.8 3.2 37 250-288 2-39 (135)
339 PRK02705 murD UDP-N-acetylmura 87.5 0.38 8.3E-06 54.9 2.9 32 252-285 2-33 (459)
340 PRK05976 dihydrolipoamide dehy 87.4 0.41 8.8E-06 54.9 3.0 33 251-285 181-213 (472)
341 PRK07251 pyridine nucleotide-d 87.4 0.42 9E-06 54.2 3.0 33 251-285 158-190 (438)
342 PRK04965 NADH:flavorubredoxin 87.2 0.43 9.4E-06 52.9 3.0 34 250-285 141-174 (377)
343 PRK08268 3-hydroxy-acyl-CoA de 87.1 0.49 1.1E-05 55.0 3.4 33 251-285 8-40 (507)
344 COG1250 FadB 3-hydroxyacyl-CoA 87.0 0.57 1.2E-05 50.8 3.7 32 251-284 4-35 (307)
345 cd01487 E1_ThiF_like E1_ThiF_l 86.8 0.5 1.1E-05 46.9 2.9 34 252-287 1-35 (174)
346 PRK14620 NAD(P)H-dependent gly 86.4 0.52 1.1E-05 51.3 3.0 32 252-285 2-33 (326)
347 TIGR01350 lipoamide_DH dihydro 86.3 0.5 1.1E-05 53.8 3.0 33 251-285 171-203 (461)
348 PRK07417 arogenate dehydrogena 86.3 0.57 1.2E-05 50.0 3.2 32 252-285 2-33 (279)
349 KOG1335|consensus 86.3 0.62 1.3E-05 51.5 3.4 35 249-285 38-72 (506)
350 PF01488 Shikimate_DH: Shikima 86.2 0.7 1.5E-05 43.8 3.4 33 250-284 12-45 (135)
351 PRK14106 murD UDP-N-acetylmura 86.2 0.58 1.3E-05 53.2 3.4 34 250-285 5-38 (450)
352 PRK00094 gpsA NAD(P)H-dependen 86.2 0.57 1.2E-05 50.6 3.2 32 252-285 3-34 (325)
353 TIGR02279 PaaC-3OHAcCoADH 3-hy 86.1 0.52 1.1E-05 54.7 3.0 33 251-285 6-38 (503)
354 cd01483 E1_enzyme_family Super 86.1 0.56 1.2E-05 44.6 2.8 34 252-287 1-35 (143)
355 PRK11730 fadB multifunctional 86.1 0.54 1.2E-05 57.0 3.2 33 251-285 314-346 (715)
356 PRK12475 thiamine/molybdopteri 86.1 0.54 1.2E-05 51.8 2.9 36 250-287 24-60 (338)
357 PRK14619 NAD(P)H-dependent gly 86.0 0.62 1.3E-05 50.4 3.3 34 250-285 4-37 (308)
358 PRK06467 dihydrolipoamide dehy 85.9 0.56 1.2E-05 53.9 3.1 33 251-285 175-207 (471)
359 PRK07846 mycothione reductase; 85.8 0.56 1.2E-05 53.6 3.0 33 251-285 167-199 (451)
360 COG1748 LYS9 Saccharopine dehy 85.7 0.6 1.3E-05 52.2 3.1 33 251-285 2-35 (389)
361 PRK15116 sulfur acceptor prote 85.5 0.62 1.3E-05 49.6 3.0 37 249-287 29-66 (268)
362 TIGR02437 FadB fatty oxidation 85.5 0.59 1.3E-05 56.6 3.2 33 251-285 314-346 (714)
363 TIGR02053 MerA mercuric reduct 85.5 0.58 1.3E-05 53.5 2.9 32 251-284 167-198 (463)
364 PRK08644 thiamine biosynthesis 85.3 0.67 1.4E-05 47.6 3.0 36 250-287 28-64 (212)
365 TIGR01470 cysG_Nterm siroheme 85.3 0.71 1.5E-05 47.2 3.2 33 251-285 10-42 (205)
366 TIGR01421 gluta_reduc_1 glutat 85.2 0.62 1.3E-05 53.2 3.0 32 251-284 167-198 (450)
367 COG1249 Lpd Pyruvate/2-oxoglut 85.1 0.69 1.5E-05 53.0 3.2 34 250-285 173-206 (454)
368 KOG3855|consensus 85.0 0.57 1.2E-05 52.2 2.4 38 249-286 35-74 (481)
369 TIGR02374 nitri_red_nirB nitri 84.9 0.57 1.2E-05 57.4 2.7 33 253-285 1-34 (785)
370 PRK06719 precorrin-2 dehydroge 84.9 0.77 1.7E-05 44.9 3.1 33 250-284 13-45 (157)
371 TIGR02356 adenyl_thiF thiazole 84.9 0.69 1.5E-05 47.1 2.9 37 249-287 20-57 (202)
372 PRK06416 dihydrolipoamide dehy 84.8 0.67 1.5E-05 52.9 3.0 33 251-285 173-205 (462)
373 COG3634 AhpF Alkyl hydroperoxi 84.7 0.53 1.1E-05 51.3 2.0 36 248-285 209-244 (520)
374 PRK06370 mercuric reductase; V 84.7 0.68 1.5E-05 53.0 3.0 33 251-285 172-204 (463)
375 PRK06115 dihydrolipoamide dehy 84.7 0.69 1.5E-05 53.1 3.1 32 251-284 175-206 (466)
376 PRK06718 precorrin-2 dehydroge 84.7 0.79 1.7E-05 46.8 3.1 33 250-284 10-42 (202)
377 PLN02353 probable UDP-glucose 84.4 0.76 1.6E-05 53.0 3.2 35 251-285 2-36 (473)
378 TIGR02441 fa_ox_alpha_mit fatt 84.2 0.71 1.5E-05 56.1 3.0 33 251-285 336-368 (737)
379 PRK06912 acoL dihydrolipoamide 84.1 0.72 1.6E-05 52.7 2.9 33 251-285 171-203 (458)
380 PRK11154 fadJ multifunctional 84.1 0.77 1.7E-05 55.6 3.3 33 251-285 310-343 (708)
381 TIGR03385 CoA_CoA_reduc CoA-di 84.1 0.77 1.7E-05 51.8 3.1 33 251-285 138-170 (427)
382 PRK07818 dihydrolipoamide dehy 84.0 0.76 1.6E-05 52.7 3.0 32 251-284 173-204 (466)
383 PTZ00082 L-lactate dehydrogena 84.0 0.91 2E-05 49.7 3.5 34 250-285 6-40 (321)
384 PRK13512 coenzyme A disulfide 84.0 0.76 1.7E-05 52.2 3.0 33 251-285 149-181 (438)
385 COG1893 ApbA Ketopantoate redu 83.9 0.8 1.7E-05 49.8 3.0 32 252-285 2-33 (307)
386 PF01593 Amino_oxidase: Flavin 83.8 0.65 1.4E-05 50.8 2.3 24 260-285 1-24 (450)
387 PF13241 NAD_binding_7: Putati 83.8 0.88 1.9E-05 41.1 2.8 34 250-285 7-40 (103)
388 KOG1371|consensus 83.7 1.1 2.3E-05 48.7 3.7 31 252-284 4-35 (343)
389 PRK05249 soluble pyridine nucl 83.5 0.82 1.8E-05 52.1 3.0 34 250-285 175-208 (461)
390 TIGR02440 FadJ fatty oxidation 83.3 0.85 1.8E-05 55.2 3.1 33 251-285 305-338 (699)
391 PF13738 Pyr_redox_3: Pyridine 83.2 0.99 2.1E-05 44.9 3.1 34 250-285 167-200 (203)
392 PRK15057 UDP-glucose 6-dehydro 83.2 0.92 2E-05 51.0 3.2 31 252-285 2-32 (388)
393 PRK04148 hypothetical protein; 83.0 1.2 2.7E-05 42.4 3.5 32 251-285 18-49 (134)
394 cd01339 LDH-like_MDH L-lactate 83.0 0.8 1.7E-05 49.4 2.5 30 253-284 1-31 (300)
395 PF03446 NAD_binding_2: NAD bi 82.9 1 2.2E-05 44.0 3.1 33 251-285 2-34 (163)
396 PRK06292 dihydrolipoamide dehy 82.9 0.9 1.9E-05 51.8 3.0 33 251-285 170-202 (460)
397 TIGR03452 mycothione_red mycot 82.7 0.91 2E-05 51.9 2.9 32 251-284 170-201 (452)
398 PRK05690 molybdopterin biosynt 82.4 1 2.2E-05 47.3 3.0 36 250-287 32-68 (245)
399 KOG2304|consensus 82.3 1.3 2.7E-05 45.8 3.4 37 247-285 8-44 (298)
400 PRK06223 malate dehydrogenase; 82.3 1.1 2.3E-05 48.5 3.2 32 251-284 3-35 (307)
401 TIGR02355 moeB molybdopterin s 82.3 1 2.3E-05 47.1 3.0 36 250-287 24-60 (240)
402 cd01080 NAD_bind_m-THF_DH_Cycl 81.9 1.3 2.8E-05 43.9 3.3 34 249-284 43-77 (168)
403 PRK08328 hypothetical protein; 81.9 1.1 2.3E-05 46.7 2.9 36 250-287 27-63 (231)
404 PTZ00052 thioredoxin reductase 81.6 1.1 2.4E-05 52.0 3.1 31 251-283 183-213 (499)
405 KOG0399|consensus 81.6 1.5 3.3E-05 54.1 4.2 42 250-300 1785-1826(2142)
406 PF00056 Ldh_1_N: lactate/mala 80.9 1.5 3.2E-05 42.0 3.3 34 252-285 2-36 (141)
407 PRK06327 dihydrolipoamide dehy 80.8 1.2 2.6E-05 51.2 3.0 33 251-285 184-216 (475)
408 cd01485 E1-1_like Ubiquitin ac 80.6 1.5 3.3E-05 44.5 3.4 36 250-287 19-55 (198)
409 TIGR00518 alaDH alanine dehydr 80.6 1.3 2.9E-05 49.4 3.2 33 250-284 167-199 (370)
410 TIGR03736 PRTRC_ThiF PRTRC sys 80.5 1.3 2.9E-05 46.5 3.1 40 248-287 9-57 (244)
411 TIGR01505 tartro_sem_red 2-hyd 80.5 1.2 2.6E-05 47.7 2.8 32 252-285 1-32 (291)
412 cd05293 LDH_1 A subgroup of L- 80.4 1.5 3.3E-05 47.7 3.6 36 250-285 3-38 (312)
413 TIGR01438 TGR thioredoxin and 80.4 1.1 2.5E-05 51.6 2.7 31 252-284 182-212 (484)
414 cd00757 ThiF_MoeB_HesA_family 80.4 1.3 2.8E-05 45.9 2.8 36 250-287 21-57 (228)
415 TIGR01915 npdG NADPH-dependent 80.3 1.4 3.1E-05 45.2 3.1 31 252-284 2-33 (219)
416 PF01262 AlaDh_PNT_C: Alanine 80.3 1.4 3.1E-05 43.3 3.0 34 250-285 20-53 (168)
417 PTZ00058 glutathione reductase 80.2 1.3 2.7E-05 52.3 3.0 34 250-285 237-270 (561)
418 cd05291 HicDH_like L-2-hydroxy 80.2 1.3 2.9E-05 47.9 3.0 32 252-285 2-35 (306)
419 COG0686 Ald Alanine dehydrogen 80.1 1.6 3.4E-05 47.2 3.4 33 250-284 168-200 (371)
420 PRK07845 flavoprotein disulfid 80.0 1.3 2.8E-05 50.8 3.0 32 251-284 178-209 (466)
421 PRK12770 putative glutamate sy 80.0 1.4 3E-05 48.6 3.1 33 251-285 173-206 (352)
422 PRK14694 putative mercuric red 79.9 1.3 2.8E-05 50.8 3.0 32 251-284 179-210 (468)
423 TIGR01424 gluta_reduc_2 glutat 79.9 1.3 2.9E-05 50.4 3.0 33 251-285 167-199 (446)
424 PRK14727 putative mercuric red 79.9 1.3 2.8E-05 51.0 3.0 32 251-284 189-220 (479)
425 TIGR01316 gltA glutamate synth 79.8 1.3 2.8E-05 50.6 2.9 33 251-285 273-305 (449)
426 PTZ00142 6-phosphogluconate de 79.8 1.4 3E-05 50.8 3.1 33 251-285 2-34 (470)
427 PRK06116 glutathione reductase 79.7 1.4 2.9E-05 50.3 3.0 33 251-285 168-200 (450)
428 PRK12549 shikimate 5-dehydroge 79.7 1.5 3.2E-05 47.2 3.1 33 251-285 128-161 (284)
429 KOG2311|consensus 79.6 1.5 3.3E-05 49.7 3.2 36 248-285 26-61 (679)
430 PRK13748 putative mercuric red 79.6 1.3 2.8E-05 51.9 2.9 32 251-284 271-302 (561)
431 PRK11199 tyrA bifunctional cho 79.4 1.7 3.6E-05 48.6 3.6 35 249-285 97-132 (374)
432 TIGR03140 AhpF alkyl hydropero 79.4 1.4 3E-05 51.3 3.0 33 250-284 352-384 (515)
433 PRK11559 garR tartronate semia 79.2 1.6 3.5E-05 46.8 3.2 32 252-285 4-35 (296)
434 PF02254 TrkA_N: TrkA-N domain 79.2 1.6 3.5E-05 39.5 2.8 31 253-285 1-31 (116)
435 PRK08010 pyridine nucleotide-d 78.9 1.5 3.2E-05 49.9 3.0 32 251-284 159-190 (441)
436 PRK10262 thioredoxin reductase 78.9 1.5 3.2E-05 47.5 2.8 34 250-285 146-179 (321)
437 PTZ00153 lipoamide dehydrogena 78.8 1.4 3.1E-05 52.9 2.9 33 251-285 313-345 (659)
438 PRK09564 coenzyme A disulfide 78.7 1.5 3.3E-05 49.6 3.0 32 251-284 150-181 (444)
439 PLN02507 glutathione reductase 78.4 1.6 3.4E-05 50.8 3.0 33 251-285 204-236 (499)
440 COG0287 TyrA Prephenate dehydr 78.1 2 4.3E-05 46.2 3.4 34 250-285 3-36 (279)
441 PTZ00117 malate dehydrogenase; 77.9 1.9 4.1E-05 47.1 3.3 34 250-285 5-39 (319)
442 PRK08223 hypothetical protein; 77.9 1.7 3.7E-05 46.8 2.9 36 250-287 27-63 (287)
443 TIGR02374 nitri_red_nirB nitri 77.9 1.5 3.3E-05 53.8 2.9 33 251-285 141-173 (785)
444 TIGR03143 AhpF_homolog putativ 77.8 1.6 3.4E-05 51.4 2.9 34 250-285 143-176 (555)
445 cd05311 NAD_bind_2_malic_enz N 77.5 2 4.2E-05 44.7 3.2 33 250-284 25-60 (226)
446 PRK00066 ldh L-lactate dehydro 77.2 2.1 4.6E-05 46.7 3.5 33 250-284 6-40 (315)
447 PF13434 K_oxygenase: L-lysine 77.1 1.5 3.4E-05 48.3 2.4 47 250-301 2-48 (341)
448 PRK02472 murD UDP-N-acetylmura 77.1 2 4.3E-05 48.8 3.4 33 251-285 6-38 (447)
449 PRK07502 cyclohexadienyl dehyd 77.0 2.1 4.5E-05 46.3 3.3 33 251-285 7-41 (307)
450 PRK14989 nitrite reductase sub 76.9 1.7 3.8E-05 53.6 3.0 33 251-285 146-178 (847)
451 PRK15461 NADH-dependent gamma- 76.9 1.9 4E-05 46.5 2.9 32 252-285 3-34 (296)
452 PRK12831 putative oxidoreducta 76.8 1.8 3.9E-05 49.7 2.9 34 250-285 281-314 (464)
453 cd01492 Aos1_SUMO Ubiquitin ac 76.7 2.2 4.8E-05 43.3 3.2 37 249-287 20-57 (197)
454 PLN02546 glutathione reductase 76.6 1.8 3.9E-05 51.0 2.9 34 250-285 252-285 (558)
455 PRK12548 shikimate 5-dehydroge 76.5 2.2 4.9E-05 45.8 3.4 32 251-284 127-159 (289)
456 PRK05600 thiamine biosynthesis 76.4 1.9 4.2E-05 48.1 2.9 36 250-287 41-77 (370)
457 cd00755 YgdL_like Family of ac 76.3 1.9 4.1E-05 45.0 2.7 36 250-287 11-47 (231)
458 COG2509 Uncharacterized FAD-de 76.0 1.8 3.9E-05 49.0 2.4 40 246-285 14-56 (486)
459 COG1179 Dinucleotide-utilizing 75.7 2.5 5.4E-05 44.2 3.3 38 250-289 30-68 (263)
460 COG1087 GalE UDP-glucose 4-epi 75.6 2.4 5.2E-05 45.7 3.1 32 252-285 2-34 (329)
461 cd01075 NAD_bind_Leu_Phe_Val_D 75.6 2.4 5.2E-05 43.1 3.1 32 251-284 29-60 (200)
462 TIGR00872 gnd_rel 6-phosphoglu 75.5 2.2 4.8E-05 46.0 3.0 32 252-285 2-33 (298)
463 cd05191 NAD_bind_amino_acid_DH 75.2 2.8 6E-05 36.4 3.0 33 250-284 23-56 (86)
464 PRK05597 molybdopterin biosynt 75.2 2.3 4.9E-05 47.3 3.0 36 250-287 28-64 (355)
465 cd01065 NAD_bind_Shikimate_DH 75.1 2.6 5.7E-05 40.2 3.1 34 250-285 19-53 (155)
466 TIGR00507 aroE shikimate 5-deh 75.0 2.5 5.5E-05 44.8 3.3 33 250-284 117-149 (270)
467 PRK08017 oxidoreductase; Provi 75.0 2.7 5.8E-05 43.3 3.4 32 252-285 4-36 (256)
468 PRK09599 6-phosphogluconate de 74.8 2.4 5.2E-05 45.7 3.1 32 252-285 2-33 (301)
469 TIGR01292 TRX_reduct thioredox 74.8 2.3 5E-05 44.8 2.9 32 251-284 142-173 (300)
470 PLN02695 GDP-D-mannose-3',5'-e 74.7 3.1 6.7E-05 46.2 4.0 37 247-285 18-55 (370)
471 PRK00683 murD UDP-N-acetylmura 74.4 2.7 5.8E-05 47.6 3.4 33 251-285 4-36 (418)
472 cd01484 E1-2_like Ubiquitin ac 74.3 2.3 5E-05 44.4 2.7 34 252-287 1-35 (234)
473 PRK11880 pyrroline-5-carboxyla 74.3 2.6 5.6E-05 44.4 3.1 33 251-285 3-38 (267)
474 PRK05993 short chain dehydroge 74.3 2.8 6.2E-05 44.1 3.4 33 251-285 5-38 (277)
475 PRK07878 molybdopterin biosynt 74.1 2.3 4.9E-05 47.9 2.7 36 250-287 42-78 (392)
476 TIGR01423 trypano_reduc trypan 74.1 2.3 5E-05 49.2 2.9 35 251-285 188-223 (486)
477 cd01078 NAD_bind_H4MPT_DH NADP 73.9 2.9 6.2E-05 41.9 3.2 33 250-284 28-61 (194)
478 PRK15317 alkyl hydroperoxide r 73.8 2.4 5.2E-05 49.3 3.0 34 250-285 351-384 (517)
479 PRK08306 dipicolinate synthase 73.7 2.8 6.1E-05 45.3 3.3 34 250-285 152-185 (296)
480 PRK05442 malate dehydrogenase; 73.5 2.6 5.6E-05 46.3 3.0 35 248-284 2-44 (326)
481 PRK06153 hypothetical protein; 73.5 2.7 5.9E-05 47.0 3.1 43 250-294 176-219 (393)
482 COG0771 MurD UDP-N-acetylmuram 73.2 3.3 7.1E-05 47.4 3.7 34 250-285 7-40 (448)
483 PRK09496 trkA potassium transp 72.9 2.8 6E-05 47.6 3.1 32 252-285 2-33 (453)
484 cd05290 LDH_3 A subgroup of L- 72.7 2.6 5.6E-05 45.9 2.7 31 252-284 1-33 (307)
485 PRK09424 pntA NAD(P) transhydr 72.5 3 6.5E-05 48.5 3.3 34 250-285 165-198 (509)
486 PRK08762 molybdopterin biosynt 72.5 2.7 5.9E-05 46.9 2.9 37 249-287 134-171 (376)
487 cd00300 LDH_like L-lactate deh 72.4 2.5 5.4E-05 45.8 2.4 31 253-285 1-33 (300)
488 PRK00258 aroE shikimate 5-dehy 72.2 3.2 6.9E-05 44.3 3.2 33 250-284 123-156 (278)
489 PLN02240 UDP-glucose 4-epimera 72.2 3.4 7.3E-05 44.9 3.5 34 249-284 4-38 (352)
490 TIGR02853 spore_dpaA dipicolin 72.1 3.2 7E-05 44.7 3.2 34 250-285 151-184 (287)
491 cd00401 AdoHcyase S-adenosyl-L 72.0 2.9 6.4E-05 47.3 3.0 34 250-285 202-235 (413)
492 PRK04308 murD UDP-N-acetylmura 71.9 3.4 7.3E-05 47.0 3.5 33 251-285 6-38 (445)
493 PRK06545 prephenate dehydrogen 71.9 3 6.5E-05 46.3 3.0 32 252-285 2-33 (359)
494 PF10727 Rossmann-like: Rossma 71.9 4 8.6E-05 38.6 3.4 34 249-284 9-42 (127)
495 KOG3851|consensus 71.6 2.9 6.3E-05 45.4 2.7 37 248-284 37-73 (446)
496 cd01490 Ube1_repeat2 Ubiquitin 71.5 2.8 6.1E-05 47.7 2.7 34 252-287 1-40 (435)
497 TIGR01381 E1_like_apg7 E1-like 71.4 3 6.5E-05 49.5 3.0 36 250-287 338-374 (664)
498 PRK06179 short chain dehydroge 71.4 3.7 8E-05 42.8 3.5 34 250-285 4-38 (270)
499 PRK07411 hypothetical protein; 71.3 2.9 6.4E-05 47.0 2.8 36 250-287 38-74 (390)
500 cd01488 Uba3_RUB Ubiquitin act 71.3 2.9 6.3E-05 45.1 2.6 34 252-287 1-35 (291)
No 1
>KOG3923|consensus
Probab=100.00 E-value=6.5e-48 Score=394.89 Aligned_cols=326 Identities=33% Similarity=0.552 Sum_probs=273.2
Q ss_pred cceEEEeecceechhhHHHhhh-----hCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQR-----RFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYA 324 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~-----~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~ 324 (728)
.++|+|||+||+|||||+.|.+ ..+-.+|+|++..+....+|..++|+|+|..+. ++......+|++.+++.|.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl~~p~~~~-~~~~~~~~~w~k~tf~~l~ 81 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGLFRPDLSD-GTPQEINRQWGKDTFNYLA 81 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccceeecccCC-CCcHHHHHHHHHHHHHHHH
Confidence 4589999999999999988887 235679999999999999999999999995432 3345568899999999998
Q ss_pred cccc----cccccEEEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccceeccccc
Q psy16975 325 GLLS----ENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400 (728)
Q Consensus 325 ~l~~----~~~Gv~~~~G~~~a~~~~~~~~~~~~~~~g~~~~~L~~~el~~~~P~~~~~G~~~~~g~idp~~ll~~L~~~ 400 (728)
.++. ++.|+.+.+|+.+.+++.-.+..+.|.+...+++.|+++|+. ++|.....|++|.+...++..|++||.+.
T Consensus 82 ~l~rs~~a~~aGV~l~sg~~ls~~e~~~~~~~~w~diV~~fr~l~e~EL~-~f~~~~~~G~~~Tt~~sE~~~ylpyl~k~ 160 (342)
T KOG3923|consen 82 HLARSEEAGEAGVCLVSGHILSDSESLDDQQRSWGDIVYGFRDLTERELL-GFPDYSTYGIHFTTYLSEGPKYLPYLKKR 160 (342)
T ss_pred HHhccccccccceEEeeeeeeccCCCchhhhhhHHhhhhhhhcCCHHHhc-CCCCccccceeEEEeeccchhhhHHHHHH
Confidence 8876 578888999998877532223457889999999999999998 68854578999999999999999999999
Q ss_pred CCCCCCCCCCceeeEEEEEeeCceeEEEecccccc-ccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhh
Q psy16975 401 DGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEK-VSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQC 479 (728)
Q Consensus 401 a~~~~~G~~~~~l~v~I~e~t~~~V~~~~g~~v~~-l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~ 479 (728)
+. .+| ++|+++ ++ ++++.. ...+| +||||| |+ |++.|+
T Consensus 161 l~--e~G----------------------vef~~r~v~------~l~E~~-~~~~D--VivNCt-----GL---~a~~L~ 199 (342)
T KOG3923|consen 161 LT--ENG----------------------VEFVQRRVE------SLEEVA-RPEYD--VIVNCT-----GL---GAGKLA 199 (342)
T ss_pred HH--hcC----------------------cEEEEeeec------cHHHhc-cCCCc--EEEECC-----cc---cccccc
Confidence 99 888 333333 33 444441 23678 999999 99 999999
Q ss_pred hhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHH-hhc-eeeeecCCceEEeccc
Q psy16975 480 AENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVR-LAG-AYIIPSYGGLVTLGGT 557 (728)
Q Consensus 480 ~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~-~~~-~YiiP~~dG~vviGgt 557 (728)
++.. ++|+||| ++ .+.+||+.+ ++. +.. .|++|..+. |++||+
T Consensus 200 gDd~----~yPiRGq-----------------------Vl--~V~ApWvkh-----f~~~D~~~ty~iP~~~~-V~lGg~ 244 (342)
T KOG3923|consen 200 GDDD----LYPIRGQ-----------------------VL--KVDAPWVKH-----FIYRDFSRTYIIPGTES-VTLGGT 244 (342)
T ss_pred CCcc----eeeccce-----------------------EE--EeeCCceeE-----EEEecCCccEEecCCce-EEEccc
Confidence 8864 7999999 44 678999988 333 444 589987765 999999
Q ss_pred cccCcccccccccchhhhhhcccccccccccccceeeeeecccccceeeeeeccccccceeeeeeeeEEeceeEEEEEee
Q psy16975 558 QDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHR 637 (728)
Q Consensus 558 ~e~~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~ 637 (728)
.++++|+.+++.++...|++++.++.|+|..++|++.|+|+||.|+.+|+|.|.+..
T Consensus 245 ~Q~g~w~~ei~~~D~~dIl~rc~aL~P~l~~a~ii~E~vGlRP~Rk~vRlE~e~~~~----------------------- 301 (342)
T KOG3923|consen 245 KQEGNWNLEITDEDRRDILERCCALEPSLRHAEIIREWVGLRPGRKQVRLEAELRTR----------------------- 301 (342)
T ss_pred cccCcccCcCChhhHHHHHHHHHHhCcccccceehhhhhcccCCCCceeeeeeeecC-----------------------
Confidence 999999999999999999999999999999999999999999999999999975421
Q ss_pred ecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccccCCCCceeeeeeeec
Q psy16975 638 FKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQ 717 (728)
Q Consensus 638 ~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~ 717 (728)
.|+...|||||||||.|||++||||.+++.|+..
T Consensus 302 ----------------------------------------------~~k~~~VVHnYGHgG~G~Tl~wGtAlea~~Lv~~ 335 (342)
T KOG3923|consen 302 ----------------------------------------------GGKRLTVVHNYGHGGNGFTLGWGTALEAAKLVLD 335 (342)
T ss_pred ----------------------------------------------CCccceeEeeccCCCCceecccchHHHHHHHHHH
Confidence 2566779999999999999999999999999988
Q ss_pred ccccc
Q psy16975 718 SHKAS 722 (728)
Q Consensus 718 ~~~~~ 722 (728)
.++++
T Consensus 336 ~l~~~ 340 (342)
T KOG3923|consen 336 ALGAS 340 (342)
T ss_pred Hhhhc
Confidence 87654
No 2
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=100.00 E-value=2.1e-34 Score=339.67 Aligned_cols=350 Identities=16% Similarity=0.124 Sum_probs=234.0
Q ss_pred CCcceEEEEEEEEeeecccccCcccce-eeeeEEEEEeCCCCCccccccCCceeeEEeecCCCCCCCccccCcceEEEee
Q psy16975 179 ADLSWEVSVSVQQVTQTDEKVTPNLEI-KQLNVQVTKVNPKSQTNATQNGDKKGLFFIPTQSCPANPKVMGSNHKVAILG 257 (728)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~dVvVIG 257 (728)
+.-.+.+.++..+||+.|.++||.+++ ..+|.|+-...+...+.... .+ ..+|..++.....+||+|||
T Consensus 198 ~~~~~~t~t~a~~vr~~l~~~GF~v~~~~~~g~kr~~~~~~~~~~~~~---~~-------~~~w~~~~~~~~~~dVvIIG 267 (662)
T PRK01747 198 PGATLATFTSAGFVRRGLQEAGFTVRKVKGFGRKREMLVGELEQTLPA---PL-------AAPWFARPGSPKARDAAIIG 267 (662)
T ss_pred CCCEEEEeehHHHHHHHHHHcCCeeeecCCCchhhhhhhehhccccCC---CC-------CCCcccCCCcCCCCCEEEEC
Confidence 356788999999999999999999985 33444543322111000000 00 01111111112247999999
Q ss_pred cceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccccccCCCCCCCCCchhhhhhhh----hcccccccccccccc
Q psy16975 258 AGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSPNFMGPDLETTKEWIR----YSYDHYAGLLSENCG 332 (728)
Q Consensus 258 AGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~----~s~~~~~~l~~~~~G 332 (728)
|||+|+++||+|++ +|++|+|||++. ++.++|++++|++++.. .. ......++.. .+.+.|.++.+....
T Consensus 268 aGIaG~s~A~~La~--~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~--~~-~~~~~~~l~~~a~~~a~~~~~~l~~~~~~ 342 (662)
T PRK01747 268 GGIAGAALALALAR--RGWQVTLYEADEAPAQGASGNRQGALYPLL--SK-DDNALSRFFRAAFLFARRFYDALPAAGVA 342 (662)
T ss_pred ccHHHHHHHHHHHH--CCCeEEEEecCCCccccCCcCccccccccc--CC-CCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999 899999999984 78999999999999842 11 1222333333 344555554310112
Q ss_pred cEE-Eccc-ccccchhhhhhc----ccccccchhccccCHHHHhhcCCC-CcceeEeEE-eeeecCccceecccccCCCC
Q psy16975 333 VQV-INGY-NLAKSEKQCAEN----HYLKPVLPVYKRMSEEELAEIGPG-DWKYGIYMS-TLVIPNRIFLPWCMQKDGPS 404 (728)
Q Consensus 333 v~~-~~G~-~~a~~~~~~~~~----~~~~~~g~~~~~L~~~el~~~~P~-~~~~G~~~~-~g~idp~~ll~~L~~~a~~~ 404 (728)
+.+ .+|+ .++.++++.+.. ..... +..+++++++|+.+++|. ....|++++ +|++||..++.+|++.+.
T Consensus 343 ~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~-~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a~-- 419 (662)
T PRK01747 343 FDHDWCGVLQLAWDEKSAEKIAKMLALGLP-AELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALAG-- 419 (662)
T ss_pred CCCCCCceEEeecCchHHHHHHHHHhccCc-hHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhcc--
Confidence 223 3465 445554433211 11112 345789999999988765 345678887 599999999999999998
Q ss_pred CCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccc-cccccccccccEEEcccccccchhhhhhc
Q psy16975 405 NLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDH-YAGLLSENCGVQVINGYNLAKSEKQCAEN 482 (728)
Q Consensus 405 ~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~-ada~~VVnAa~~viaG~~~~~S~~L~~~~ 482 (728)
+ | ++++++++ +++....+.+. |.+. .+. ..++.||+|+ |. |+..+.+..
T Consensus 420 ~-G-------v~i~~~~~V~~i~~~~~~~~-----------v~t~--~g~~~~ad~VV~A~-----G~---~s~~l~~~~ 470 (662)
T PRK01747 420 Q-Q-------LTIHFGHEVARLEREDDGWQ-----------LDFA--GGTLASAPVVVLAN-----GH---DAARFAQTA 470 (662)
T ss_pred c-C-------cEEEeCCEeeEEEEeCCEEE-----------EEEC--CCcEEECCEEEECC-----CC---Ccccccccc
Confidence 7 8 89999888 44543332221 2222 221 2233999999 99 998887654
Q ss_pred ccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeee-cCCceEEeccccccC
Q psy16975 483 HYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIP-SYGGLVTLGGTQDYG 561 (728)
Q Consensus 483 gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP-~~dG~vviGgt~e~~ 561 (728)
.+|+.|+|||++... .....+.+.. +.....|++| ..+|.+++|+|++.+
T Consensus 471 --~lpl~p~RGqv~~~~---------------------~~~~~~~~~~------~~~~~~Y~~p~~~~g~~~iGat~~~~ 521 (662)
T PRK01747 471 --HLPLYSVRGQVSHLP---------------------TTPALSALKQ------VLCYDGYLTPQPANGTHCIGASYDRD 521 (662)
T ss_pred --CCCcccccceEEeec---------------------CCccccccCc------eeECCceeCCCCCCCceEeCcccCCC
Confidence 378999999964211 0100111111 1123579999 788999999999998
Q ss_pred cccccccccchhhhhhccccccccc-----ccccceeeeeecccccce
Q psy16975 562 NARLGVDRFDSRAILNRTAAVRPEI-----LAAPVEKVWVGLRPYRHH 604 (728)
Q Consensus 562 ~~d~~~~~~~~~~ll~~~~~l~P~L-----~~~~I~~~waGlRP~tpd 604 (728)
+.+..++.+..+.+++++.+++|.+ .+.++.+.|+|+||+|+|
T Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~P~l~~~~~~~~~~~~~~aG~R~~tpD 569 (662)
T PRK01747 522 DTDTAFREADHQENLERLAECLPQALWAKEVDVSALQGRVGFRCASRD 569 (662)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCchhhhccCccccCceEEEeccCCC
Confidence 8888888888999999999999987 577889999999999999
No 3
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.97 E-value=3.3e-33 Score=310.93 Aligned_cols=347 Identities=15% Similarity=0.134 Sum_probs=247.2
Q ss_pred ccCCceeeEEeecCCCCCCCccccCcceEEEeecceechhhHHHhhhhCC-CC-cEEEeecccccccCCCCccccccCCC
Q psy16975 225 QNGDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFP-NC-DVTVIADKFNMDTTSDGAAGLFEPSP 302 (728)
Q Consensus 225 ~g~~~w~~~~~~~~~~~~~~~~~~~~~dVvVIGAGIiGLStA~~La~~~~-G~-~VtVIEk~~~g~gAS~~agGii~p~~ 302 (728)
.+..+|+..|-++. ....+||+||||||+|+|+||+|++ + |. +|+|||++.++.++|+.++|+++..+
T Consensus 13 ~~~~~~~~~~~~~~--------~~~~~dvvIIGgGi~G~s~A~~L~~--~~g~~~V~vle~~~~~~gas~~~~g~~~~~~ 82 (407)
T TIGR01373 13 RGHRGWKPAWRSPE--------PKPTYDVIIVGGGGHGLATAYYLAK--EHGITNVAVLEKGWLGGGNTGRNTTIVRSNY 82 (407)
T ss_pred ccCCCCCcccCCCC--------CCccCCEEEECCcHHHHHHHHHHHH--hcCCCeEEEEEcccccCcccccccceeeecc
Confidence 35678988887754 3357899999999999999999998 5 85 89999999999999999999998743
Q ss_pred CCCCCCchhhhhhhhhcccccccccccccccE--E-Ecccc-cccchhhhhh----cccccccchhccccCHHHHhhcCC
Q psy16975 303 NFMGPDLETTKEWIRYSYDHYAGLLSENCGVQ--V-INGYN-LAKSEKQCAE----NHYLKPVLPVYKRMSEEELAEIGP 374 (728)
Q Consensus 303 ~l~~~~~~~~~~~~~~s~~~~~~l~~~~~Gv~--~-~~G~~-~a~~~~~~~~----~~~~~~~g~~~~~L~~~el~~~~P 374 (728)
. .+ ...++...+.+.|.++.+ +.+++ + ++|++ ++.++++.+. ...++..+.+.++|+++|+++++|
T Consensus 83 ~--~~---~~~~~~~~s~~l~~~l~~-~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P 156 (407)
T TIGR01373 83 L--YP---ESAELYEHAMKLWEGLSQ-DLNYNVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIP 156 (407)
T ss_pred c--Cc---cccHHHHHHHHHHHHHHH-HhCCCcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCC
Confidence 2 11 234455666677776653 44443 3 56754 4555554322 223345678899999999999999
Q ss_pred C-C--------cceeEeEE-eeeecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchh
Q psy16975 375 G-D--------WKYGIYMS-TLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTC 443 (728)
Q Consensus 375 ~-~--------~~~G~~~~-~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~ 443 (728)
. . ..++++.+ ++++||..++.+|++.+. ++| ++++++|+ ++++..+ +++++
T Consensus 157 ~l~~~~~~~~~~~ga~~~~~~g~v~p~~l~~~l~~~a~--~~G-------v~~~~~~~V~~i~~~~---------~~~~~ 218 (407)
T TIGR01373 157 ILDFSPDARFPVVGGLLQRRGGTARHDAVAWGYARGAD--RRG-------VDIIQNCEVTGFIRRD---------GGRVI 218 (407)
T ss_pred CCccccccccceeEEEEcCCCCcCCHHHHHHHHHHHHH--HCC-------CEEEeCCEEEEEEEcC---------CCcEE
Confidence 5 1 12345545 489999999999999998 888 99999888 4443221 12222
Q ss_pred HHHHhhhccccccccccccccEEEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCcc
Q psy16975 444 AMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRI 523 (728)
Q Consensus 444 ~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~ 523 (728)
.+.+. .+...++.||+|+ |. |+..+....++.+++.|.++|++ +.++.
T Consensus 219 ~v~t~--~g~i~a~~vVvaa-----gg---~~~~l~~~~g~~~~~~~~~~~~~---------------------~~~~~- 266 (407)
T TIGR01373 219 GVETT--RGFIGAKKVGVAV-----AG---HSSVVAAMAGFRLPIESHPLQAL---------------------VSEPL- 266 (407)
T ss_pred EEEeC--CceEECCEEEECC-----Ch---hhHHHHHHcCCCCCcCcccceEE---------------------EecCC-
Confidence 33333 3334444899999 99 88888776676677788877742 11110
Q ss_pred ccchhcccchHHHH--HhhceeeeecCCceEEeccccc-cCcccccccccchhhhhhcccccccccccccceeeeeeccc
Q psy16975 524 FLPWCMQKNFASLV--RLAGAYIIPSYGGLVTLGGTQD-YGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRP 600 (728)
Q Consensus 524 ~~P~l~~~~~~~~i--~~~~~YiiP~~dG~vviGgt~e-~~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP 600 (728)
.+.+.. ++ .+...|+.|..+|++++|++.+ ...++..++.+..+.+++.+.+++|.|.+.++.+.|+|+||
T Consensus 267 -~~~~~~-----~~~~~~~~~y~~p~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~~~ 340 (407)
T TIGR01373 267 -KPIIDT-----VVMSNAVHFYVSQSDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAAILEMFPILSRVRMLRSWGGIVD 340 (407)
T ss_pred -CCCcCC-----eEEeCCCceEEEEcCCceEEEecCCCCCCccCcCCCHHHHHHHHHHHHHhCCCcCCCCeEEEeccccc
Confidence 011111 11 1346799999999999998765 34455556677789999999999999999999999999999
Q ss_pred ccce--eeeeeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcc
Q psy16975 601 YRHH--VRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDM 678 (728)
Q Consensus 601 ~tpd--~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~ 678 (728)
+|+| +.|..
T Consensus 341 ~t~D~~PiIg~--------------------------------------------------------------------- 351 (407)
T TIGR01373 341 VTPDGSPIIGK--------------------------------------------------------------------- 351 (407)
T ss_pred cCCCCCceeCC---------------------------------------------------------------------
Confidence 9999 32211
Q ss_pred eEEeecCceEEEEeecccCccccccCCCCceeeeeeeecc
Q psy16975 679 HVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQS 718 (728)
Q Consensus 679 ~~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~~ 718 (728)
.|.+| +|.+.||+|+|+++++++|+.+++++.+.
T Consensus 352 --~~~~g----l~~a~G~~g~G~~~ap~~G~~la~li~~~ 385 (407)
T TIGR01373 352 --TPLPN----LYLNCGWGTGGFKATPASGTVFAHTLARG 385 (407)
T ss_pred --CCCCC----eEEEeccCCcchhhchHHHHHHHHHHhCC
Confidence 02223 78999999999999999999999998653
No 4
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.97 E-value=4.4e-33 Score=310.27 Aligned_cols=335 Identities=21% Similarity=0.221 Sum_probs=239.1
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccccccCCCCCC--CC-------------C-------
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSPNFM--GP-------------D------- 308 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agGii~p~~~l~--~~-------------~------- 308 (728)
||+||||||+||++|++|++ .|++|+|||++. ++.++|++|+|++++..... .+ .
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~--~g~~V~vle~~~~~~~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ--AGHEVTVIDRQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRP 79 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCCchhhhheeccCcccccccccccCCCchhhhhhhhccCCCCCeEecC
Confidence 89999999999999999999 899999999984 68899999999998853100 00 0
Q ss_pred --c-----------------------hhhhhhhhhcccccccccccccccE--E-Ecccc-cccchhhhhh----ccccc
Q psy16975 309 --L-----------------------ETTKEWIRYSYDHYAGLLSENCGVQ--V-INGYN-LAKSEKQCAE----NHYLK 355 (728)
Q Consensus 309 --~-----------------------~~~~~~~~~s~~~~~~l~~~~~Gv~--~-~~G~~-~a~~~~~~~~----~~~~~ 355 (728)
. ....+++.++.+.|.++.+ +.+++ + +.|.+ ++.++++++. ...++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~-~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~ 158 (416)
T PRK00711 80 DGDPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRA-ETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLE 158 (416)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCccccccCcEEEEECCHHHHHHHHHHHHHHH
Confidence 0 0123344556677777663 55654 3 45764 4555554322 23445
Q ss_pred ccchhccccCHHHHhhcCCC------CcceeEeEE-eeeecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEE
Q psy16975 356 PVLPVYKRMSEEELAEIGPG------DWKYGIYMS-TLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTV 427 (728)
Q Consensus 356 ~~g~~~~~L~~~el~~~~P~------~~~~G~~~~-~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~ 427 (728)
+.+.++++|+.+|+.+++|. ...+|++++ ++++||..++.+|++.+. ++| ++|+++|+ ++++.
T Consensus 159 ~~g~~~~~l~~~e~~~~~P~l~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~--~~G-------~~i~~~~~V~~i~~ 229 (416)
T PRK00711 159 EAGVPYELLDRDELAAVEPALAGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAE--QLG-------VKFRFNTPVDGLLV 229 (416)
T ss_pred HcCCCceecCHHHHHHhCCCccCCCccceeEEECCCcccCCHHHHHHHHHHHHH--HCC-------CEEEcCCEEEEEEe
Confidence 67888999999999999884 233567777 589999999999999998 888 99999888 44433
Q ss_pred EeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCC
Q psy16975 428 VRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGD 507 (728)
Q Consensus 428 ~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~ 507 (728)
..+. ++.+.+. .+...++.||+|+ |. |+..++...++..|+.|+|||++...
T Consensus 230 ~~~~----------~~~v~t~--~~~~~a~~VV~a~-----G~---~~~~l~~~~g~~~pi~p~rg~~~~~~-------- 281 (416)
T PRK00711 230 EGGR----------ITGVQTG--GGVITADAYVVAL-----GS---YSTALLKPLGVDIPVYPLKGYSLTVP-------- 281 (416)
T ss_pred cCCE----------EEEEEeC--CcEEeCCEEEECC-----Cc---chHHHHHHhCCCcccCCccceEEEEe--------
Confidence 2222 1123333 2333444999999 99 99999887776788999999853110
Q ss_pred cceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCceEEeccccccCcccccccccchhhhhhcccccccccc
Q psy16975 508 WKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEIL 587 (728)
Q Consensus 508 w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~vviGgt~e~~~~d~~~~~~~~~~ll~~~~~l~P~L~ 587 (728)
+......|... +......+++++.+|++++|++.+...++..++.+..+.+.+.+.++||.+.
T Consensus 282 -----------~~~~~~~p~~~------~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~ 344 (416)
T PRK00711 282 -----------ITDEDRAPVST------VLDETYKIAITRFDDRIRVGGMAEIVGFDLRLDPARRETLEMVVRDLFPGGG 344 (416)
T ss_pred -----------cCCCCCCCcee------EEecccCEEEeecCCceEEEEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcc
Confidence 00000011100 1112234566777888999998877777777777888889999999999999
Q ss_pred cccceeeeeecccccce--eeeeeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceee
Q psy16975 588 AAPVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFN 665 (728)
Q Consensus 588 ~~~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~n 665 (728)
+.++.+.|+|+||+|+| +.|..
T Consensus 345 ~~~~~~~w~G~r~~t~D~~PiIG~-------------------------------------------------------- 368 (416)
T PRK00711 345 DLSQATFWTGLRPMTPDGTPIVGA-------------------------------------------------------- 368 (416)
T ss_pred cccccceeeccCCCCCCCCCEeCC--------------------------------------------------------
Confidence 99999999999999999 22211
Q ss_pred ccccccccccCcceEEeecCceEEEEeecccCccccccCCCCceeeeeeeecc
Q psy16975 666 CTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQS 718 (728)
Q Consensus 666 c~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~~ 718 (728)
.|.+| +|.++||+|+|++++|++|+.++++|.+.
T Consensus 369 ---------------~~~~g----l~~a~G~~g~G~~~ap~~g~~la~li~g~ 402 (416)
T PRK00711 369 ---------------TRYKN----LWLNTGHGTLGWTMACGSGQLLADLISGR 402 (416)
T ss_pred ---------------cCCCC----EEEecCCchhhhhhhhhHHHHHHHHHcCC
Confidence 02233 78999999999999999999999999764
No 5
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.97 E-value=3.4e-32 Score=298.26 Aligned_cols=310 Identities=19% Similarity=0.178 Sum_probs=204.1
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccccccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLSEN 330 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~~~ 330 (728)
+||+||||||+|++|||+|++ +|++|+|||++.++.++|++|+|++.+... . .....++++++.+.|.++.+ +
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~--~G~~V~vle~~~~~~gaS~~~~G~~~~~~~--~--~~~~~~l~~~~~~~~~~l~~-~ 73 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR--RGLSVTVIERSSRAQGASVRNFGQVWPTGQ--A--PGPAWDRARRSREIWLELAA-K 73 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCcccccCceEEecCC--C--CccHHHHHHHHHHHHHHHHH-H
Confidence 589999999999999999999 899999999999889999999999976321 1 12356688888888888774 5
Q ss_pred cccEE-Eccccc-ccchhhhhh----cccccccchhccccCHHHHhhcCCC----CcceeEeEE-eeeecCccceecccc
Q psy16975 331 CGVQV-INGYNL-AKSEKQCAE----NHYLKPVLPVYKRMSEEELAEIGPG----DWKYGIYMS-TLVIPNRIFLPWCMQ 399 (728)
Q Consensus 331 ~Gv~~-~~G~~~-a~~~~~~~~----~~~~~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~-~g~idp~~ll~~L~~ 399 (728)
.++.+ +.|+++ +.++++.+. ...++..+.++++|+++|+++++|. ....|++++ ++++||..++.+|++
T Consensus 74 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~ 153 (365)
T TIGR03364 74 AGIWVRENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAA 153 (365)
T ss_pred cCCCEEeCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHH
Confidence 56665 456543 444443321 1223345667899999999999983 345677777 599999999999999
Q ss_pred cCCCCCC-CCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchh
Q psy16975 400 KDGPSNL-GERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEK 477 (728)
Q Consensus 400 ~a~~~~~-G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~ 477 (728)
.+. ++ | ++|+++++ ++++ .+ .|.+. .+...++.||+|+ |. |+..
T Consensus 154 ~~~--~~~G-------v~i~~~t~V~~i~--~~-------------~v~t~--~g~i~a~~VV~A~-----G~---~s~~ 199 (365)
T TIGR03364 154 YLA--EQHG-------VEFHWNTAVTSVE--TG-------------TVRTS--RGDVHADQVFVCP-----GA---DFET 199 (365)
T ss_pred HHH--hcCC-------CEEEeCCeEEEEe--cC-------------eEEeC--CCcEEeCEEEECC-----CC---Chhh
Confidence 876 54 7 89998887 3332 11 12222 2332333999999 99 9999
Q ss_pred hhhhcccccccchhccccCHHHHhh-cCCCCcc-eeEeEEeeeecCccccch---hccc---chHHHHH-hhceeeeecC
Q psy16975 478 QCAENHYLKPVLPVYKRMSEEELAE-IGPGDWK-YGIYMSTLVIPNRIFLPW---CMQK---NFASLVR-LAGAYIIPSY 548 (728)
Q Consensus 478 L~~~~gi~lpv~PvRGQl~~~el~~-~~p~~w~-~G~~~~Tlvve~~~~~P~---l~~~---~~~~~i~-~~~~YiiP~~ 548 (728)
|++..+..+++.|+|||++.++... .....+. .+.... ..+.-...|+ .... ..+.+.. ....|+.|+.
T Consensus 200 l~~~~~~~~~~~p~~~q~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 277 (365)
T TIGR03364 200 LFPELFAASGVRRCKLQMMRTAPQPRLPLGTALLTGLSLR--RYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQNP 277 (365)
T ss_pred hCcchhhccCcceEEEEeeeccCCCCCcCCccccccceee--echhHhhCcchHHHHhhhcccCchhhhcCeEEEEEECC
Confidence 8877654578999999987544211 0000000 000000 0000000000 0000 0000111 2357999999
Q ss_pred CceEEeccccccCccccc-ccccchhhhhhcccccccccccccceeeeeecccccce
Q psy16975 549 GGLVTLGGTQDYGNARLG-VDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH 604 (728)
Q Consensus 549 dG~vviGgt~e~~~~d~~-~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd 604 (728)
+|++++|++.+....+.. .+.+..+.+.+.+.+++ .|.+.++.+.|+|+||+|+|
T Consensus 278 ~g~~~iG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~w~G~r~~t~d 333 (365)
T TIGR03364 278 DGELIIGDSHEYGLAPDPFDDEEIDNLILAEAKTIL-GLPDLDIVERWQGVYASSPP 333 (365)
T ss_pred CCCEEecCcccccCCCCCcchHHHHHHHHHHHHHhc-CCCCCceEEEEeEEecCCCC
Confidence 999999999876543322 23334455666676665 68889999999999999998
No 6
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.97 E-value=1.8e-32 Score=305.31 Aligned_cols=344 Identities=21% Similarity=0.225 Sum_probs=237.5
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccccccCCCCC--CC-------------CC------
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSPNF--MG-------------PD------ 308 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agGii~p~~~l--~~-------------~~------ 308 (728)
+||+|||||++|+++||+|++ .|++|+||||+. ++.++|++|+|++.+.+.. .. ++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~--~g~~V~vle~~~~~~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ--RGYQVTVFDRHRYAAMETSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLN 79 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCcCcccccCCEEeecccccccChHHHHhhhHHhcCCCCCeEec
Confidence 599999999999999999999 899999999996 7889999999999773210 00 00
Q ss_pred ------------------------chhhhhhhhhcccccccccccccccE--E-Ecccc-cccchhhhhh----cccccc
Q psy16975 309 ------------------------LETTKEWIRYSYDHYAGLLSENCGVQ--V-INGYN-LAKSEKQCAE----NHYLKP 356 (728)
Q Consensus 309 ------------------------~~~~~~~~~~s~~~~~~l~~~~~Gv~--~-~~G~~-~a~~~~~~~~----~~~~~~ 356 (728)
.....+++.++.+.|.++.+ +.+++ + ++|++ ++.++++.+. ...++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~ 158 (410)
T PRK12409 80 PKPSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARKHLFDIAE-REGIDFDLERRGILHIYHDKAGFDHAKRVNALLAE 158 (410)
T ss_pred CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCcceeecCcEEEEECCHHHHHhccHHHHHHHh
Confidence 01123456677777777764 55554 3 56765 4555554332 133345
Q ss_pred cchhccccCHHHHhhcCCC---CcceeEeEE-eeeecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEecc
Q psy16975 357 VLPVYKRMSEEELAEIGPG---DWKYGIYMS-TLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGP 431 (728)
Q Consensus 357 ~g~~~~~L~~~el~~~~P~---~~~~G~~~~-~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~ 431 (728)
.+.+.++|+++|+++++|. ....|++++ ++++|+..++..|++.++ +.| ++|+++++ ++++..++.
T Consensus 159 ~g~~~~~l~~~e~~~~~P~l~~~~~ga~~~~~~g~~~~~~~~~~l~~~a~--~~G-------~~i~~~~~V~~i~~~~~~ 229 (410)
T PRK12409 159 GGLERRAVTPEEMRAIEPTLTGEYYGGYYTPSDSTGDIHKFTTGLAAACA--RLG-------VQFRYGQEVTSIKTDGGG 229 (410)
T ss_pred cCCCeEEcCHHHHHHhCCCCccccceEEEcCCCCccCHHHHHHHHHHHHH--hCC-------CEEEcCCEEEEEEEeCCE
Confidence 6777899999999999986 234567776 589999999999999998 888 99999988 455433322
Q ss_pred ccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCCccee
Q psy16975 432 LHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYG 511 (728)
Q Consensus 432 ~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G 511 (728)
+...+...+. . +.. ...++ .||+|+ |. |+..+.+..+...++.|++||++..++...
T Consensus 230 ~~v~~~~~~~--~-~~~--~i~a~--~vV~a~-----G~---~s~~l~~~~~~~~~i~p~~g~~~~~~~~~~-------- 286 (410)
T PRK12409 230 VVLTVQPSAE--H-PSR--TLEFD--GVVVCA-----GV---GSRALAAMLGDRVNVYPVKGYSITVNLDDE-------- 286 (410)
T ss_pred EEEEEEcCCC--C-ccc--eEecC--EEEECC-----Cc---ChHHHHHHhCCCCccccCCceEEEeecCCc--------
Confidence 2110110000 0 000 12345 999999 99 999998877766789999998542111000
Q ss_pred EeEEeeeecCccccchhcccchHHHHHhhceeeee-c-CCceEEeccccccCcccccccccchhhhhhcccccccccccc
Q psy16975 512 IYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIP-S-YGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAA 589 (728)
Q Consensus 512 ~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP-~-~dG~vviGgt~e~~~~d~~~~~~~~~~ll~~~~~l~P~L~~~ 589 (728)
. .....|+. .+.+...|+.+ + .++++++||+.+...++..++.+..+.+++++.++||.|.+.
T Consensus 287 -------~-~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~igg~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~ 351 (410)
T PRK12409 287 -------A-SRAAAPWV-------SLLDDSAKIVTSRLGADRFRVAGTAEFNGYNRDIRADRIRPLVDWVRRNFPDVSTR 351 (410)
T ss_pred -------c-ccccCCce-------eeeecCCcEEEEecCCCcEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCCCcc
Confidence 0 00001211 01123344444 2 456788999988777777777788999999999999999988
Q ss_pred cceeeeeecccccce--eeeeeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeecc
Q psy16975 590 PVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCT 667 (728)
Q Consensus 590 ~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~ 667 (728)
.+. .|+|+||+++| +.|...
T Consensus 352 ~~~-~w~G~r~~t~D~~PiiG~~--------------------------------------------------------- 373 (410)
T PRK12409 352 RVV-PWAGLRPMMPNMMPRVGRG--------------------------------------------------------- 373 (410)
T ss_pred ccc-eecccCCCCCCCCCeeCCC---------------------------------------------------------
Confidence 876 79999999999 333210
Q ss_pred ccccccccCcceEEeecCceEEEEeecccCccccccCCCCceeeeeeeecccc
Q psy16975 668 GLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQSHK 720 (728)
Q Consensus 668 g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~~~~ 720 (728)
+.+| +|+++||||.|+++|+++|+.+++++.+...
T Consensus 374 --------------~~~~----l~~~~G~~~~G~~~ap~~g~~lA~~i~~~~~ 408 (410)
T PRK12409 374 --------------RRPG----VFYNTGHGHLGWTLSAATADLVAQVVAQKLP 408 (410)
T ss_pred --------------CCCC----EEEecCCcccchhhcccHHHHHHHHHcCCCC
Confidence 1123 7899999999999999999999999876544
No 7
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.96 E-value=1.8e-31 Score=287.70 Aligned_cols=297 Identities=25% Similarity=0.261 Sum_probs=208.0
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhccccccccccccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLSENC 331 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~~~~ 331 (728)
||+||||||+|++|||+|++ +|++|+|||++.+++++|+.++|++++.. .........++..++++.|.++.+ +.
T Consensus 1 DvvIIGaGi~G~~~A~~La~--~G~~V~l~e~~~~~~~aS~~~~g~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~-~~ 75 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR--RGHSVTLLERGDIGSGASGRSGGLVRPGI--SSYPDPQYARLARESVEFWRELAE-EY 75 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH--TTSEEEEEESSSTTSSGGGSSSEEEECSG--SHHSSHHHHHHHHHHHHHHHHHHH-HT
T ss_pred CEEEECcCHHHHHHHHHHHH--CCCeEEEEeeccccccccccccccccccc--cccccccccchhhhhccchhhhhh-hc
Confidence 89999999999999999999 99999999999889999999999999841 111234677888888888888864 44
Q ss_pred cc--EE-Eccc-ccccchhhhh----hcccccccchhccccCHHHHhhcCCC---CcceeEeEE-eeeecCccceecccc
Q psy16975 332 GV--QV-INGY-NLAKSEKQCA----ENHYLKPVLPVYKRMSEEELAEIGPG---DWKYGIYMS-TLVIPNRIFLPWCMQ 399 (728)
Q Consensus 332 Gv--~~-~~G~-~~a~~~~~~~----~~~~~~~~g~~~~~L~~~el~~~~P~---~~~~G~~~~-~g~idp~~ll~~L~~ 399 (728)
+. .+ ..|. .++.++.+.+ ....+++.+.++++++++++.+++|. ....|++++ ++++||..++++|.+
T Consensus 76 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~ 155 (358)
T PF01266_consen 76 GIPVGFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAA 155 (358)
T ss_dssp TSSCEEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHH
T ss_pred CcccccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHH
Confidence 43 23 4454 4454444432 12344566778999999999999986 235677776 689999999999999
Q ss_pred cCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchhh
Q psy16975 400 KDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQ 478 (728)
Q Consensus 400 ~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L 478 (728)
.++ ++| ++|+++++ +++....+.+ .+|.+. .+...++.||+|+ |+ |+..|
T Consensus 156 ~~~--~~G-------v~i~~~~~V~~i~~~~~~v----------~gv~~~--~g~i~ad~vV~a~-----G~---~s~~l 206 (358)
T PF01266_consen 156 EAQ--RAG-------VEIRTGTEVTSIDVDGGRV----------TGVRTS--DGEIRADRVVLAA-----GA---WSPQL 206 (358)
T ss_dssp HHH--HTT--------EEEESEEEEEEEEETTEE----------EEEEET--TEEEEECEEEE-------GG---GHHHH
T ss_pred HHH--Hhh-------hhccccccccchhhccccc----------cccccc--ccccccceeEecc-----cc---cceee
Confidence 999 888 99999988 5555444333 234454 3434444999999 99 99999
Q ss_pred hhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCceEEecccc
Q psy16975 479 CAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQ 558 (728)
Q Consensus 479 ~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~vviGgt~ 558 (728)
+...+...++.|.+|+++..+.... ....+..... .........|++|+. |.+++|.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~--~~~~~~~~~~~~p~~-g~~~ig~~~ 265 (358)
T PF01266_consen 207 LPLLGLDLPLRPVRGQVLVLEPPES------------------PLAPAILFPP--VIFGPSDGVYIRPRP-GGVLIGTAD 265 (358)
T ss_dssp HHTTTTSSTEEEEEEEEEEEEGCCS------------------GSSSEEEEEE--ECESSCTEEEEEEET-TEEEEEESE
T ss_pred eecccccccccccceEEEEEccCCc------------------cccccccccc--ccccccccceecccc-ccccccccc
Confidence 9888755688999999652221000 0000000000 000012467889998 778888322
Q ss_pred c---cC-------cccccccccchhhhhhcccccccccccccceeeeeecccccce
Q psy16975 559 D---YG-------NARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH 604 (728)
Q Consensus 559 e---~~-------~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd 604 (728)
. .. ..+...+.+ .+.+++++.+++|.|.+.++.+.|+|+||+++|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~p~l~~~~v~~~~~g~r~~t~d 320 (358)
T PF01266_consen 266 GNYDPGPSPEDSSGEDPDVDEE-IDELLERLARLLPGLGDAEVVRSWAGIRPFTPD 320 (358)
T ss_dssp CEEEESSSHHHHSHHHHHHHHH-HHHHHHHHHHHSGGGGGSEEEEEEEEEEEEETT
T ss_pred ccccccccccccccccccccHH-HHHhHHHHHHHHHHhhhccccccccceeeeccC
Confidence 1 11 112223344 679999999999999999999999999999999
No 8
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.96 E-value=6.5e-31 Score=297.69 Aligned_cols=340 Identities=15% Similarity=0.115 Sum_probs=226.8
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCC-----CCch---hhhhhhhhc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMG-----PDLE---TTKEWIRYS 319 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~-----~~~~---~~~~~~~~s 319 (728)
..++||+||||||+|+||||+|++..+|.+|+|||++.++.++|++|+|++.+...... -... .+.+.+.++
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 101 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASEQA 101 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCccccccccCHHHHHHhhCHHHHHHHHHHHHHH
Confidence 34689999999999999999999933399999999999999999999997765211000 0011 222334455
Q ss_pred ccccccccccccccE--E-Eccccc-ccchhhhhh----cccccccchh-ccccCHHHHhhcCCC-CcceeEeEE-eeee
Q psy16975 320 YDHYAGLLSENCGVQ--V-INGYNL-AKSEKQCAE----NHYLKPVLPV-YKRMSEEELAEIGPG-DWKYGIYMS-TLVI 388 (728)
Q Consensus 320 ~~~~~~l~~~~~Gv~--~-~~G~~~-a~~~~~~~~----~~~~~~~g~~-~~~L~~~el~~~~P~-~~~~G~~~~-~g~i 388 (728)
++.+.++.+ +.+++ + .+|+++ +.++++.+. ...+++.+.+ +++|+++|+.+++|. ....|++++ ++++
T Consensus 102 ~~~~~~l~~-~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~~~g~i 180 (460)
T TIGR03329 102 VLEIAAFCE-QHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSPVAASV 180 (460)
T ss_pred HHHHHHHHH-HhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeCCCeEE
Confidence 666655553 44543 4 467654 455444321 2334456655 689999999999885 344677777 5999
Q ss_pred cCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEE
Q psy16975 389 PNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVI 467 (728)
Q Consensus 389 dp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~vi 467 (728)
||.+++.+|++.++ ++| ++|+++|+ ++++ .+. .+.|.+. .+...++.||+|+
T Consensus 181 ~P~~l~~~L~~~a~--~~G-------v~i~~~t~V~~i~--~~~----------~~~v~t~--~g~v~A~~VV~At---- 233 (460)
T TIGR03329 181 QPGLLVRGLRRVAL--ELG-------VEIHENTPMTGLE--EGQ----------PAVVRTP--DGQVTADKVVLAL---- 233 (460)
T ss_pred CHHHHHHHHHHHHH--HcC-------CEEECCCeEEEEe--eCC----------ceEEEeC--CcEEECCEEEEcc----
Confidence 99999999999998 888 99999998 3333 111 1123343 3444444999999
Q ss_pred cccccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchH--HHHHh---hce
Q psy16975 468 NGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFA--SLVRL---AGA 542 (728)
Q Consensus 468 aG~~~~~S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~--~~i~~---~~~ 542 (728)
|. |+..+++..+ .++.|+++|++.++. .. +.+....++ ..+.+ ...
T Consensus 234 -ga---~s~~l~~~~~--~~~~p~~~~~~~t~p---------------------l~--~~~~~~~~~~~~~~~d~~~~~~ 284 (460)
T TIGR03329 234 -NA---WMASHFPQFE--RSIAIVSSDMVITEP---------------------AP--DLLAATGLDHGTSVLDSRIFVH 284 (460)
T ss_pred -cc---cccccChhhc--CeEEEeccceEecCC---------------------Cc--HHHHhhcCCCCceEecchhhhh
Confidence 99 9888877655 457788888542220 00 000000000 00111 125
Q ss_pred eeeecCCceEEeccccccCcc----cc--cccccchhhhhhcccccccccccccceeeeeecccccce--eeeeeccccc
Q psy16975 543 YIIPSYGGLVTLGGTQDYGNA----RL--GVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH--VRVERDLTGA 614 (728)
Q Consensus 543 YiiP~~dG~vviGgt~e~~~~----d~--~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd--~Rie~e~~~~ 614 (728)
|+.|..+|++++|+......+ +. .......+.+.+.+.++||.|.+.++.+.|+|+||+|+| +.|.
T Consensus 285 y~r~~~dgrll~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~fP~L~~~~i~~~W~G~~~~t~D~~P~iG------ 358 (460)
T TIGR03329 285 YYRSTPDGRLMLGKGGNTFAYGGRMLPVFNQPSPYEALLTRSLRKFFPALAEVPIAASWNGPSDRSVTGLPFFG------ 358 (460)
T ss_pred heeECCCCcEEEcCCccccccCcccccccCCchHHHHHHHHHHHHhCCCcCCCeeeEEEeceeCCCCCCCceee------
Confidence 889999999999975422111 11 111223567889999999999999999999999999999 2221
Q ss_pred cceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeec
Q psy16975 615 AQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNY 694 (728)
Q Consensus 615 ~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~y 694 (728)
+..+ .-.||.+.
T Consensus 359 -------------------------------------------------------------------~~~~-~~gl~~a~ 370 (460)
T TIGR03329 359 -------------------------------------------------------------------RLNG-QPNVFYGF 370 (460)
T ss_pred -------------------------------------------------------------------eecC-CCCEEEEe
Confidence 1110 01388999
Q ss_pred ccCccccccCCCCceeeeeeeecc
Q psy16975 695 GHGGYGVTSAPGSARCAVSVFEQS 718 (728)
Q Consensus 695 Ghgg~G~t~s~g~A~~~~~l~~~~ 718 (728)
||+|+|+++|+.+|+.+++++.+.
T Consensus 371 G~~G~Gv~~a~~~G~~lA~li~g~ 394 (460)
T TIGR03329 371 GYSGNGVAPSRMGGQILSSLVLGL 394 (460)
T ss_pred CcCCCChhHHHHHHHHHHHHhcCC
Confidence 999999999999999999998763
No 9
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.96 E-value=1.7e-30 Score=288.17 Aligned_cols=343 Identities=17% Similarity=0.179 Sum_probs=233.3
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLS 328 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~ 328 (728)
++||+||||||+|+++||+|++..+|++|+||||.. ++.++|++|+|++++..+. . ......+|+.++.+.|.++.+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~-~-~~~~~~~l~~~~~~~~~~~~~ 79 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYY-T-PGSLKARFCRRGNEATKAFCD 79 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEcccccc-C-cHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999932399999999985 7789999999999884321 1 223456788888888888764
Q ss_pred cccccEE-Eccccc-ccchhhhhh----cccccccchhccccCHHHHhhcCCC-CcceeEeEE-eeeecCccceeccccc
Q psy16975 329 ENCGVQV-INGYNL-AKSEKQCAE----NHYLKPVLPVYKRMSEEELAEIGPG-DWKYGIYMS-TLVIPNRIFLPWCMQK 400 (728)
Q Consensus 329 ~~~Gv~~-~~G~~~-a~~~~~~~~----~~~~~~~g~~~~~L~~~el~~~~P~-~~~~G~~~~-~g~idp~~ll~~L~~~ 400 (728)
+.++.+ +.|.++ +.++++.+. ....+..+..+++++.+++++++|. ....|++++ ++++||..++.+|.+.
T Consensus 80 -~~~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~ 158 (393)
T PRK11728 80 -QHGIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAEL 158 (393)
T ss_pred -HcCCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHH
Confidence 556665 557544 445444322 1233455667899999999999995 224567777 5999999999999999
Q ss_pred CCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhh
Q psy16975 401 DGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQC 479 (728)
Q Consensus 401 a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~ 479 (728)
++ ++| ++++++++ .++....+.+ .+.+. .+...++.||+|+ |. |+..++
T Consensus 159 ~~--~~G-------v~i~~~~~V~~i~~~~~~~-----------~V~~~--~g~i~ad~vV~A~-----G~---~s~~l~ 208 (393)
T PRK11728 159 IQ--ARG-------GEIRLGAEVTALDEHANGV-----------VVRTT--QGEYEARTLINCA-----GL---MSDRLA 208 (393)
T ss_pred HH--hCC-------CEEEcCCEEEEEEecCCeE-----------EEEEC--CCEEEeCEEEECC-----Cc---chHHHH
Confidence 98 888 88888877 3343222211 12222 2233344999999 99 998887
Q ss_pred hhccc--ccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCceEEeccc
Q psy16975 480 AENHY--LKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGT 557 (728)
Q Consensus 480 ~~~gi--~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~vviGgt 557 (728)
...++ ..++.|+|||++..+... + ....+++. ..| .. .+...+.|+.|+.+|++++|++
T Consensus 209 ~~~g~~~~~~v~p~rGq~~~~~~~~--~------~~~~~~v~----~~p--~~-----~~~~~g~~~~p~~~G~~~~G~~ 269 (393)
T PRK11728 209 KMAGLEPDFRIVPFRGEYYRLAPEK--N------QLVNHLIY----PVP--DP-----AFPFLGVHLTRMIDGSVTVGPN 269 (393)
T ss_pred HHhCCCCCCceEEeeeEEEEecccc--c------cccCCcee----cCC--CC-----CCCcceEEeecCCCCCEEECCC
Confidence 76654 267899999975322110 0 00000011 001 00 0012357999999999999974
Q ss_pred ccc----Cccccc-c---------------------cccchhhh---------hhcccccccccccccceeeeeeccc--
Q psy16975 558 QDY----GNARLG-V---------------------DRFDSRAI---------LNRTAAVRPEILAAPVEKVWVGLRP-- 600 (728)
Q Consensus 558 ~e~----~~~d~~-~---------------------~~~~~~~l---------l~~~~~l~P~L~~~~I~~~waGlRP-- 600 (728)
... .+++.. . +.+.++++ ++.+.+++|.|...++.+.|+|+||
T Consensus 270 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~P~l~~~~i~~~~~G~Rp~~ 349 (393)
T PRK11728 270 AVLAFKREGYRKRDFSLRDLLEILTYPGFWKLAQKHWRSGLGEMKNSLSKSGYLRLVQKYCPSLTLSDLQPYPAGVRAQA 349 (393)
T ss_pred cceehhhcCccccCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCHHHcccCCCceeeee
Confidence 432 223321 1 33344555 5999999999999999999999999
Q ss_pred ccceeeeeeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceE
Q psy16975 601 YRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHV 680 (728)
Q Consensus 601 ~tpd~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~ 680 (728)
.++|-..+ .|+||+-.
T Consensus 350 ~~~d~~~~---------------------------------------------------~d~~i~~~------------- 365 (393)
T PRK11728 350 VSRDGKLV---------------------------------------------------DDFLFVET------------- 365 (393)
T ss_pred eCCCCCcc---------------------------------------------------CceEEecC-------------
Confidence 88871110 24454421
Q ss_pred EeecCceEEEEeecccCccccccCCCCceeeeeee
Q psy16975 681 IPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVF 715 (728)
Q Consensus 681 ~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~ 715 (728)
++ .+|.-|.-+.|+|+|+++|+.|++++
T Consensus 366 ---~~----~~~~~~~~spg~t~s~~ia~~v~~~~ 393 (393)
T PRK11728 366 ---PR----SLHVCNAPSPAATSSLPIGEHIVSKV 393 (393)
T ss_pred ---CC----EEEEcCCCCchHHccHHHHHHHHhhC
Confidence 22 67889999999999999999988764
No 10
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.95 E-value=3.5e-30 Score=282.79 Aligned_cols=335 Identities=12% Similarity=0.054 Sum_probs=226.8
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc--cCCCCccccccCCCCCCCCCchhhhhhhhhcccccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD--TTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGL 326 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~--gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l 326 (728)
+++||+||||||+|+++||+|++ +|++|+|||++.++. ++|..++++++..+ .. .....+++.++.+.|.++
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~--~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~--~~--~~~~~~l~~~s~~~~~~l 75 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLAR--RGLRVLGLDRFMPPHQQGSSHGDTRIIRHAY--GE--GPAYVPLVLRAQELWREL 75 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHH--CCCeEEEEecccCCCCCcCcCCcceEEEeec--cC--CchhhHHHHHHHHHHHHH
Confidence 46899999999999999999999 899999999987653 45556666666521 11 124567788888888877
Q ss_pred cccccccE-E-Ecccccc-cchhh-hh-hcccccccchhccccCHHHHhhcCCC----CcceeEeEE-eeeecCccceec
Q psy16975 327 LSENCGVQ-V-INGYNLA-KSEKQ-CA-ENHYLKPVLPVYKRMSEEELAEIGPG----DWKYGIYMS-TLVIPNRIFLPW 396 (728)
Q Consensus 327 ~~~~~Gv~-~-~~G~~~a-~~~~~-~~-~~~~~~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~-~g~idp~~ll~~ 396 (728)
.+ +.+.+ + .+|+++. .++.+ ++ ....+++.+.+.++++++++.+++|. ....|++++ +|++||..++.+
T Consensus 76 ~~-~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~ 154 (376)
T PRK11259 76 ER-ESGEPLFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKA 154 (376)
T ss_pred HH-HhCCccEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHH
Confidence 63 44543 2 5676443 22221 11 12334556778899999999999985 233567776 599999999999
Q ss_pred ccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccc
Q psy16975 397 CMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKS 475 (728)
Q Consensus 397 L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S 475 (728)
+++.+. +.| ++|+++++ +++....+.+ .+.+. .+...++.||+|+ |. |+
T Consensus 155 ~~~~~~--~~g-------v~i~~~~~v~~i~~~~~~~-----------~v~~~--~g~~~a~~vV~A~-----G~---~~ 204 (376)
T PRK11259 155 HLRLAR--EAG-------AELLFNEPVTAIEADGDGV-----------TVTTA--DGTYEAKKLVVSA-----GA---WV 204 (376)
T ss_pred HHHHHH--HCC-------CEEECCCEEEEEEeeCCeE-----------EEEeC--CCEEEeeEEEEec-----Cc---ch
Confidence 999988 778 89998888 4444322211 23333 2333344999999 99 99
Q ss_pred hhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHH-hhceeeeecCCce-EE
Q psy16975 476 EKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVR-LAGAYIIPSYGGL-VT 553 (728)
Q Consensus 476 ~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~-~~~~YiiP~~dG~-vv 553 (728)
..|+... .+|+.|.++|++.++... . .. .....|.+.. ... +...|++|+.+++ ++
T Consensus 205 ~~l~~~~--~~~i~~~~~~~~~~~~~~----~----------~~-~~~~~p~~~~-----~~~~~~~~y~~p~~~~~~l~ 262 (376)
T PRK11259 205 KDLLPPL--ELPLTPVRQVLAWFQADG----R----------YS-EPNRFPAFIW-----EVPDGDQYYGFPAENGPGLK 262 (376)
T ss_pred hhhcccc--cCCceEEEEEEEEEecCC----c----------cC-CccCCCEEEE-----ecCCCceeEeccCCCCCceE
Confidence 9988764 378899999964221100 0 00 0000121110 011 2337889998888 99
Q ss_pred ecccccc------Cccccccc-ccchhhhhhcccccccccccccceeeeeecccccce--eeeeeccccccceeeeeeee
Q psy16975 554 LGGTQDY------GNARLGVD-RFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYPVF 624 (728)
Q Consensus 554 iGgt~e~------~~~d~~~~-~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~~~ 624 (728)
+|++... .+.+...+ ++..+.+++.+.++||.+.+ +.+.|+|+||+|+| +.|..
T Consensus 263 ig~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~~~~--~~~~~~g~~~~t~D~~P~ig~--------------- 325 (376)
T PRK11259 263 IGKHNGGQEITSPDERDRFVTVAEDGAELRPFLRNYLPGVGP--CLRGAACTYTNTPDEHFIIDT--------------- 325 (376)
T ss_pred EEECCCCCCCCChhhccCCCCcHHHHHHHHHHHHHHCCCCCc--cccceEEecccCCCCCceeec---------------
Confidence 9988752 11122222 44578899999999998877 88899999999999 32211
Q ss_pred EEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccccC
Q psy16975 625 KVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSA 704 (728)
Q Consensus 625 ~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s 704 (728)
+.+ .-.|+.+.||+|+|++++
T Consensus 326 ----------------------------------------------------------~~~-~~gl~~~~G~~g~G~~~a 346 (376)
T PRK11259 326 ----------------------------------------------------------LPG-HPNVLVASGCSGHGFKFA 346 (376)
T ss_pred ----------------------------------------------------------CCC-CCCEEEEecccchhhhcc
Confidence 100 013789999999999999
Q ss_pred CCCceeeeeeeecc
Q psy16975 705 PGSARCAVSVFEQS 718 (728)
Q Consensus 705 ~g~A~~~~~l~~~~ 718 (728)
|++|+.+++|+.+.
T Consensus 347 p~~g~~la~li~~~ 360 (376)
T PRK11259 347 SVLGEILADLAQDG 360 (376)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999764
No 11
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.95 E-value=6.1e-29 Score=273.56 Aligned_cols=346 Identities=23% Similarity=0.258 Sum_probs=229.2
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhccccccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLL 327 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~ 327 (728)
++++||+||||||+|++|||+|++ .|.+|+|+|++.++.++|++++|.+...... .........+...+...|.++.
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~--~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAE--RGADVTVLEAGEAGGGAAGRNAGGILAPWAS-PGGELEVRPLADLSLALWRELS 78 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHH--cCCEEEEEecCccCCcchhcchhhhcccccc-CCccchhhhhhHHHHHHHHHHH
Confidence 457899999999999999999999 8999999999998888998887777664211 1111123334444444444433
Q ss_pred ccccc--cEE-Eccc-ccccchh-----hh-hhcccccccchhccccCHHHHhhcCCC---C-cceeEeEE-eeeecCcc
Q psy16975 328 SENCG--VQV-INGY-NLAKSEK-----QC-AENHYLKPVLPVYKRMSEEELAEIGPG---D-WKYGIYMS-TLVIPNRI 392 (728)
Q Consensus 328 ~~~~G--v~~-~~G~-~~a~~~~-----~~-~~~~~~~~~g~~~~~L~~~el~~~~P~---~-~~~G~~~~-~g~idp~~ 392 (728)
. ..+ ..+ ..+. .+...+. +. .....++......++++..++.+++|. + ...|++++ ++++||..
T Consensus 79 ~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~a~~~~~~~~~~p~~ 157 (387)
T COG0665 79 E-ELGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRL 157 (387)
T ss_pred H-HhCcchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhCCCCCcccceeeEecCCCCcCCHHH
Confidence 2 111 112 3333 2222221 11 111222233333367899999888886 2 34566776 59999999
Q ss_pred ceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccc
Q psy16975 393 FLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYN 471 (728)
Q Consensus 393 ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~ 471 (728)
|+..|++.+. ++|. +.++++++ ..+... . +.+.+.|. .+.+.++.||+|+ |.
T Consensus 158 ~~~~l~~~~~--~~G~------~~~~~~~~~~~~~~~----------~-~~~~v~t~--~g~i~a~~vv~a~-----G~- 210 (387)
T COG0665 158 LTRALAAAAE--ELGV------VIIEGGTPVTSLERD----------G-RVVGVETD--GGTIEADKVVLAA-----GA- 210 (387)
T ss_pred HHHHHHHHHH--hcCC------eEEEccceEEEEEec----------C-cEEEEEeC--CccEEeCEEEEcC-----ch-
Confidence 9999999998 8771 34444555 222211 1 22345555 4433344999999 99
Q ss_pred cccchhhhhhcc-cccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCc
Q psy16975 472 LAKSEKQCAENH-YLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGG 550 (728)
Q Consensus 472 ~~~S~~L~~~~g-i~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG 550 (728)
|+..+.+..+ +.+++.|++||++.++.... ... ....+ ... .......|++|..++
T Consensus 211 --~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~--------------~~~-~~~~~-~~~-----~~~~~~~y~~~~~~g 267 (387)
T COG0665 211 --WAGELAATLGELPLPLRPVRGQALTTEPPEG--------------LLA-DGLAP-VVL-----VVDDGGGYIRPRGDG 267 (387)
T ss_pred --HHHHHHHhcCCCcCccccccceEEEecCCCc--------------ccc-ccccc-eEE-----EecCCceEEEEcCCC
Confidence 9999988877 66789999999653221100 000 00000 000 123567999999999
Q ss_pred eEEeccccccC-cccccccccc--hhhhhhcccccccccccccceeeeeeccccc-ce--eeeeeccccccceeeeeeee
Q psy16975 551 LVTLGGTQDYG-NARLGVDRFD--SRAILNRTAAVRPEILAAPVEKVWVGLRPYR-HH--VRVERDLTGAAQYLTWYPVF 624 (728)
Q Consensus 551 ~vviGgt~e~~-~~d~~~~~~~--~~~ll~~~~~l~P~L~~~~I~~~waGlRP~t-pd--~Rie~e~~~~~~~~~~l~~~ 624 (728)
++++|++.+.. +++..+.... ...+++.+.+++|.|.+..+.+.|+|+||++ +| +.|..
T Consensus 268 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~g~~~~t~pd~~P~iG~--------------- 332 (387)
T COG0665 268 RLRVGGTDEEGGDDPSDPEREDLVIAELLRVARALLPGLADAGIEAAWAGLRPPTTPDGLPVIGR--------------- 332 (387)
T ss_pred cEEEeecccccCCCCccccCcchhHHHHHHHHHHhCccccccccceeeeccccCCCCCCCceeCC---------------
Confidence 99999998886 3555554444 6799999999999999999999999999987 98 22211
Q ss_pred EEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccccC
Q psy16975 625 KVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSA 704 (728)
Q Consensus 625 ~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s 704 (728)
..|.. .|+.+.||+|+|++++
T Consensus 333 -------------------------------------------------------~~~~~----~l~~a~G~~~~G~~~~ 353 (387)
T COG0665 333 -------------------------------------------------------AAPLP----NLYVATGHGGHGFTLA 353 (387)
T ss_pred -------------------------------------------------------CCCCC----CEEEEecCCCcChhhc
Confidence 00112 3899999999999999
Q ss_pred CCCceeeeeeeeccccc
Q psy16975 705 PGSARCAVSVFEQSHKA 721 (728)
Q Consensus 705 ~g~A~~~~~l~~~~~~~ 721 (728)
+++|+.+|++|.+....
T Consensus 354 p~~g~~lA~li~g~~~~ 370 (387)
T COG0665 354 PALGRLLADLILGGEPE 370 (387)
T ss_pred cHHHHHHHHHHcCCCCC
Confidence 99999999999885443
No 12
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.95 E-value=7.3e-29 Score=272.77 Aligned_cols=337 Identities=15% Similarity=0.113 Sum_probs=225.2
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc--ccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM--DTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLS 328 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g--~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~ 328 (728)
+||+||||||+|+|+||+|++ +|++|+|||+..++ .++|..++++++... . .....++++++.+.|.++.+
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~--~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~---~--~~~~~~l~~~s~~~~~~l~~ 73 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK--HGKKTLLLEQFDLPHSRGSSHGQSRIIRKAY---P--EDFYTPMMLECYQLWAQLEK 73 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCCCCCCCCCCeeeeecc---C--chhHhHHHHHHHHHHHHHHH
Confidence 589999999999999999999 89999999997654 245556667766521 1 22466788888888888763
Q ss_pred cccccE--EEccccc-ccchhh-hh-hcccccccchhccccCHHHHhhcCCC----CcceeEeEE-eeeecCccceeccc
Q psy16975 329 ENCGVQ--VINGYNL-AKSEKQ-CA-ENHYLKPVLPVYKRMSEEELAEIGPG----DWKYGIYMS-TLVIPNRIFLPWCM 398 (728)
Q Consensus 329 ~~~Gv~--~~~G~~~-a~~~~~-~~-~~~~~~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~-~g~idp~~ll~~L~ 398 (728)
+.+++ .++|+++ +.++++ ++ ....+++.+.+.+.|+++|+.+++|. ....|++++ ++++||..++++|.
T Consensus 74 -~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~ 152 (380)
T TIGR01377 74 -EAGTKLHRQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQ 152 (380)
T ss_pred -HhCCeeEeecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHH
Confidence 45544 3567644 333221 11 22344567778899999999999995 123466666 59999999999999
Q ss_pred ccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchh
Q psy16975 399 QKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEK 477 (728)
Q Consensus 399 ~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~ 477 (728)
+.++ ++| ++++++|+ ++++...+.+ .+.+. .+.+.++.||+|+ |. |+..
T Consensus 153 ~~~~--~~g-------~~~~~~~~V~~i~~~~~~~-----------~v~~~--~~~i~a~~vV~aa-----G~---~~~~ 202 (380)
T TIGR01377 153 ELAE--AHG-------ATVRDGTKVVEIEPTELLV-----------TVKTT--KGSYQANKLVVTA-----GA---WTSK 202 (380)
T ss_pred HHHH--HcC-------CEEECCCeEEEEEecCCeE-----------EEEeC--CCEEEeCEEEEec-----Cc---chHH
Confidence 9988 778 88888887 3443222111 12222 2233344999999 99 9999
Q ss_pred hhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCc-eEEecc
Q psy16975 478 QCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGG-LVTLGG 556 (728)
Q Consensus 478 L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG-~vviGg 556 (728)
|....++.+|+.|.++|+...+... +... .. ....|.... .-.....|++|..++ .+++|+
T Consensus 203 l~~~~g~~~~~~~~~~~~~~~~~~~--~~~~---------~~--~~~~p~~~~-----~~~~~~~y~~p~~~~~~~~~~~ 264 (380)
T TIGR01377 203 LLSPLGIEIPLQPLRINVCYWREKE--PGSY---------GV--SQAFPCFLV-----LGLNPHIYGLPSFEYPGLMKVY 264 (380)
T ss_pred HhhhcccCCCceEEEEEEEEEecCC--cccc---------Cc--cCCCCEEEE-----eCCCCceEecCCCCCCceEEEE
Confidence 9888777788999999853111000 0000 00 001121110 000235788998642 466654
Q ss_pred cccc-------Ccccccccccchhhhhhcccccccccccccceeeeeecccccce--eeeeeccccccceeeeeeeeEEe
Q psy16975 557 TQDY-------GNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYPVFKVY 627 (728)
Q Consensus 557 t~e~-------~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~~~~~~ 627 (728)
.... .+++..++.+..+.+.+.+.+++|.|.... .+.|.|+||+|+| +.|... +
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~-~~~~~~~~~~t~D~~piIg~~-----p----------- 327 (380)
T TIGR01377 265 YHHGQQIDPDERDCPFGADIEDVQILRKFVRDHLPGLNGEP-KKGEVCMYTNTPDEHFVIDLH-----P----------- 327 (380)
T ss_pred eCCCCccCcccccCCCCCCHHHHHHHHHHHHHHCCCCCCCc-ceeeEEEeccCCCCCeeeecC-----C-----------
Confidence 3221 223344666778999999999999998644 5789999999999 322210 0
Q ss_pred ceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccccCCCC
Q psy16975 628 GITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGS 707 (728)
Q Consensus 628 G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s~g~ 707 (728)
..+ +++.+.||+|+||+++|++
T Consensus 328 ------------------------------------------------------~~~----~l~va~G~~g~G~~~~p~~ 349 (380)
T TIGR01377 328 ------------------------------------------------------KYD----NVVIGAGFSGHGFKLAPVV 349 (380)
T ss_pred ------------------------------------------------------CCC----CEEEEecCCccceeccHHH
Confidence 012 3889999999999999999
Q ss_pred ceeeeeeeecc
Q psy16975 708 ARCAVSVFEQS 718 (728)
Q Consensus 708 A~~~~~l~~~~ 718 (728)
|+.+++||.+.
T Consensus 350 g~~la~li~~~ 360 (380)
T TIGR01377 350 GKILAELAMKL 360 (380)
T ss_pred HHHHHHHHhcC
Confidence 99999998764
No 13
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.95 E-value=1e-28 Score=285.08 Aligned_cols=299 Identities=11% Similarity=0.104 Sum_probs=204.6
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLS 328 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~ 328 (728)
..+||+||||||+|+++||+|++ +|++|+|||++.++.+||++|+|++++....... .....+.+.+..+.|.++..
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~--rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~-~~~~~~~~~~e~~~l~~~a~ 81 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCAL--RGLRCILVERHDIATGATGRNHGLLHSGARYAVT-DAESARECISENQILKRIAR 81 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHH--cCCeEEEEECCCCCCCcccccccceeccchhccc-CHHHHHHHHHHHHHHHHhch
Confidence 36899999999999999999999 9999999999988999999999999874321111 22334444444455555442
Q ss_pred cccccEEEcccccccchhhhh----hcccccccchhccccCHHHHhhcCCC---CcceeEeEEeeeecCccceecccccC
Q psy16975 329 ENCGVQVINGYNLAKSEKQCA----ENHYLKPVLPVYKRMSEEELAEIGPG---DWKYGIYMSTLVIPNRIFLPWCMQKD 401 (728)
Q Consensus 329 ~~~Gv~~~~G~~~a~~~~~~~----~~~~~~~~g~~~~~L~~~el~~~~P~---~~~~G~~~~~g~idp~~ll~~L~~~a 401 (728)
.+ +....++.++..+++.. ........+.+.++|+++|+.+++|. ...+|++++++++||..++.+++..+
T Consensus 82 -~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A 159 (546)
T PRK11101 82 -HC-VEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDA 159 (546)
T ss_pred -Hh-hcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHH
Confidence 21 22223444443332221 11223455677899999999999996 34577888899999999999999999
Q ss_pred CCCCCCCCCceeeEEEEEeeC-ceeEEEecccccc-ccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhh
Q psy16975 402 GPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEK-VSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQC 479 (728)
Q Consensus 402 ~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~-l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~ 479 (728)
. ++| ++|+++|+ +++....+.+..- +.+ ..+. ..+.+.++.||||| |+ |+..+.
T Consensus 160 ~--~~G-------a~i~~~t~V~~i~~~~~~v~gv~v~d------~~~g-~~~~i~A~~VVnAa-----G~---wa~~l~ 215 (546)
T PRK11101 160 K--EHG-------AQILTYHEVTGLIREGDTVCGVRVRD------HLTG-ETQEIHAPVVVNAA-----GI---WGQHIA 215 (546)
T ss_pred H--hCC-------CEEEeccEEEEEEEcCCeEEEEEEEE------cCCC-cEEEEECCEEEECC-----Ch---hHHHHH
Confidence 8 888 99999999 5554433322110 100 0011 01234455999999 99 999998
Q ss_pred hhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHH-HhhceeeeecCCceEEecccc
Q psy16975 480 AENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLV-RLAGAYIIPSYGGLVTLGGTQ 558 (728)
Q Consensus 480 ~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i-~~~~~YiiP~~dG~vviGgt~ 558 (728)
...+...++.|.|||++.++ .......+.. +. .....|++| .++.+++|.|.
T Consensus 216 ~~~g~~~~i~p~kG~~lv~~---------------------~~~~~~vi~~-----~~~~~~~~~~vp-~~~~~liGtT~ 268 (546)
T PRK11101 216 EYADLRIRMFPAKGSLLIMD---------------------HRINNHVINR-----CRKPADADILVP-GDTISLIGTTS 268 (546)
T ss_pred HhcCCCCceeecceEEEEEC---------------------CccCceeEec-----cCCCCCCCEEEe-cCCEEEEeeCC
Confidence 87776788999999965221 1000000000 00 012345666 45678999988
Q ss_pred ccCc----ccccccccchhhhhhcccccccccccccceeeeeecccccc
Q psy16975 559 DYGN----ARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRH 603 (728)
Q Consensus 559 e~~~----~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tp 603 (728)
+..+ .+..++.+.++.|++.+.+++|.|...+|++.|+|+||...
T Consensus 269 ~~~~~~~~~~~~~t~~~i~~Ll~~~~~l~P~l~~~~i~~~~aGvRPl~~ 317 (546)
T PRK11101 269 TRIDYDQIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYAGVRPLVA 317 (546)
T ss_pred CCccCCCcCCCCCCHHHHHHHHHHHHHhCCCCCccCEEEEEEEeccCCC
Confidence 6532 23678889999999999999999999999999999999854
No 14
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.94 E-value=1.5e-28 Score=265.00 Aligned_cols=317 Identities=18% Similarity=0.179 Sum_probs=228.8
Q ss_pred HHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccccc---cccc--cEE-Ecccc
Q psy16975 267 LELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLS---ENCG--VQV-INGYN 340 (728)
Q Consensus 267 ~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~---~~~G--v~~-~~G~~ 340 (728)
|+|++ +|.+|+|||+..++.++|++|+|++++.... ........+|+.++.+.|.++.+ ...+ +.+ +.|++
T Consensus 1 ~~La~--~G~~V~vle~~~~~~gaS~~~~g~~~~~~~~-~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~~~~~G~l 77 (337)
T TIGR02352 1 WELAK--RGHSVTLFDRDPMGGGASWAAAGMLAPHAEC-EYAEDPLFDLALESLRLYPEWLEALKELTGLDTGYHQCGTL 77 (337)
T ss_pred ChHHH--CCCceEEEcCCCCCcccchhhhcCccccccc-ccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCcCeEEccEE
Confidence 68999 8999999999988899999999999884311 10122467778888888876653 1123 334 55764
Q ss_pred -cccchhhhhh----cccccccchhccccCHHHHhhcCCC---CcceeEeEE-eeeecCccceecccccCCCCCCCCCCc
Q psy16975 341 -LAKSEKQCAE----NHYLKPVLPVYKRMSEEELAEIGPG---DWKYGIYMS-TLVIPNRIFLPWCMQKDGPSNLGERPS 411 (728)
Q Consensus 341 -~a~~~~~~~~----~~~~~~~g~~~~~L~~~el~~~~P~---~~~~G~~~~-~g~idp~~ll~~L~~~a~~~~~G~~~~ 411 (728)
++.++++.+. ....+..+.++++|+++|+++++|. +...|++++ +|++||..++.+|++.+. ++|
T Consensus 78 ~~a~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~l~~~~~~g~~~~~~g~v~p~~l~~~l~~~~~--~~g---- 151 (337)
T TIGR02352 78 VVAFDEDDVEHLRQLADLQSATGMEVEWLSGRALRRLEPYLSGGIRGAVFYPDDAHVDPRALLKALEKALE--KLG---- 151 (337)
T ss_pred EEeCCHHHHHHHHHHHHHHHhcCCceEEcCHHHHHHhCCCCCcccceEEEcCCCceEChHHHHHHHHHHHH--HcC----
Confidence 4555444322 1233456778999999999999885 345678877 699999999999999998 888
Q ss_pred eeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhhhhcccccccch
Q psy16975 412 TLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLP 490 (728)
Q Consensus 412 ~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~lpv~P 490 (728)
++++++++ +++...++. ++.|.+. .+...++.||+|+ |+ |+..|++ +++.|
T Consensus 152 ---~~~~~~~~v~~i~~~~~~----------~~~v~~~--~g~~~a~~vV~a~-----G~---~~~~l~~-----~~~~~ 203 (337)
T TIGR02352 152 ---VEIIEHTEVQHIEIRGEK----------VTAIVTP--SGDVQADQVVLAA-----GA---WAGELLP-----LPLRP 203 (337)
T ss_pred ---CEEEccceEEEEEeeCCE----------EEEEEcC--CCEEECCEEEEcC-----Ch---hhhhccc-----CCccc
Confidence 99999988 455433222 2233443 3333344999999 99 9998865 46899
Q ss_pred hccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCceEEeccccccCccccccccc
Q psy16975 491 VYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRF 570 (728)
Q Consensus 491 vRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~vviGgt~e~~~~d~~~~~~ 570 (728)
++||++.++... . .....|. .. .+.+...|++|..+|++++|++.+...++..++.+
T Consensus 204 ~~g~~~~~~~~~----------------~-~~~~~~~-~~-----~~~~~~~y~~p~~~g~~~iG~~~~~~~~~~~~~~~ 260 (337)
T TIGR02352 204 VRGQPLRLEAPA----------------V-PLLNRPL-RA-----VVYGRRVYIVPRRDGRLVVGATMEESGFDTTPTLG 260 (337)
T ss_pred cCceEEEeeccc----------------c-ccCCccc-ce-----EEEcCCEEEEEcCCCeEEEEEeccccCccCCCCHH
Confidence 999964221100 0 0000011 00 11245689999999999999999887788778888
Q ss_pred chhhhhhcccccccccccccceeeeeecccccce--eeeeeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhh
Q psy16975 571 DSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEK 648 (728)
Q Consensus 571 ~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~ 648 (728)
..+.+++++.++||.+.+.++.+.|+|+||+++| +.|....
T Consensus 261 ~~~~l~~~~~~~~P~l~~~~~~~~~~g~r~~t~D~~piig~~~------------------------------------- 303 (337)
T TIGR02352 261 GIKELLRDAYTILPALKEARLLETWAGLRPGTPDNLPYIGEHP------------------------------------- 303 (337)
T ss_pred HHHHHHHHHHHhCCCcccCcHHHheecCCCCCCCCCCEeCccC-------------------------------------
Confidence 9999999999999999999999999999999999 3332100
Q ss_pred hhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccccCCCCceeeeeeeec
Q psy16975 649 YISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQ 717 (728)
Q Consensus 649 ~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~ 717 (728)
... .||.+.||||.|++++|++|+.+|++|.+
T Consensus 304 ---------------------------------~~~----~~~~~~g~~g~G~~~~p~~g~~la~~i~~ 335 (337)
T TIGR02352 304 ---------------------------------EDR----RLLIATGHYRNGILLAPATAEVIADLILG 335 (337)
T ss_pred ---------------------------------CCC----CEEEEcccccCceehhhHHHHHHHHHHhc
Confidence 011 38999999999999999999999998864
No 15
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.94 E-value=3.9e-28 Score=277.84 Aligned_cols=304 Identities=13% Similarity=0.057 Sum_probs=192.6
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGL 326 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l 326 (728)
|+.++||+||||||+|+++||+|++ +|++|+|||++..+++||++++++++...... .....++.+++...+..+
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~--rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl---~~~~~~l~~e~~~e~~~l 77 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAG--RGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYL---EYYEFRLVREALIEREVL 77 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCCCCchhhhhhHHHHHHHH---HhccHHHHHHHHHHHHHH
Confidence 5667999999999999999999999 99999999999999999999999987632110 111334444444443333
Q ss_pred cccccccEEEcccccccchhhhh---------hcccc--cccchhccccCHHHHhhcCCC--CcceeEeEEeeeecCccc
Q psy16975 327 LSENCGVQVINGYNLAKSEKQCA---------ENHYL--KPVLPVYKRMSEEELAEIGPG--DWKYGIYMSTLVIPNRIF 393 (728)
Q Consensus 327 ~~~~~Gv~~~~G~~~a~~~~~~~---------~~~~~--~~~g~~~~~L~~~el~~~~P~--~~~~G~~~~~g~idp~~l 393 (728)
.+...++....++.+..++.+.. ....+ .......+.++.+++.+.+|. ....++.+.++++||..+
T Consensus 78 ~~~ap~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl 157 (502)
T PRK13369 78 LAAAPHIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARL 157 (502)
T ss_pred HHhCCccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHH
Confidence 32111111111222222211110 00111 111233566777766554553 345666667899999999
Q ss_pred eecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEccccc
Q psy16975 394 LPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNL 472 (728)
Q Consensus 394 l~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~ 472 (728)
+.+|+..+. ++| ++++++++ +++....+.+...+.++ . .. .....++.||||+ |+
T Consensus 158 ~~~l~~~a~--~~G-------a~i~~~~~V~~i~~~~~~~~v~~~~~-----~-g~--~~~i~a~~VVnAa-----G~-- 213 (502)
T PRK13369 158 VVLNALDAA--ERG-------ATILTRTRCVSARREGGLWRVETRDA-----D-GE--TRTVRARALVNAA-----GP-- 213 (502)
T ss_pred HHHHHHHHH--HCC-------CEEecCcEEEEEEEcCCEEEEEEEeC-----C-CC--EEEEEecEEEECC-----Cc--
Confidence 999999998 888 99999998 45543322111001100 0 00 0123444999999 99
Q ss_pred ccchhhhhhc-ccc--cccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCC
Q psy16975 473 AKSEKQCAEN-HYL--KPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYG 549 (728)
Q Consensus 473 ~~S~~L~~~~-gi~--lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~d 549 (728)
|+.++.... +.. .++.|.||+.+. ++.....+.... ++ .-.....|++|..+
T Consensus 214 -wa~~l~~~~~g~~~~~~v~p~kG~~lv---------------------~~~~~~~~~~~~--~~-~~dgr~~~i~P~~~ 268 (502)
T PRK13369 214 -WVTDVIHRVAGSNSSRNVRLVKGSHIV---------------------VPKFWDGAQAYL--FQ-NPDKRVIFANPYEG 268 (502)
T ss_pred -cHHHHHhhccCCCCCcceEEeeEEEEE---------------------eCCccCCCceEE--Ee-CCCCeEEEEEEecC
Confidence 999887632 322 458999998532 110000000000 00 00122368999988
Q ss_pred ceEEeccccccC---cccccccccchhhhhhccccccc-ccccccceeeeeecccccce
Q psy16975 550 GLVTLGGTQDYG---NARLGVDRFDSRAILNRTAAVRP-EILAAPVEKVWVGLRPYRHH 604 (728)
Q Consensus 550 G~vviGgt~e~~---~~d~~~~~~~~~~ll~~~~~l~P-~L~~~~I~~~waGlRP~tpd 604 (728)
+.+++|+|.... .++..+++++++.|++.+.++|| .|...+|++.|+|+||.++|
T Consensus 269 ~~~liGtTd~~~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~~~i~~~waGlRPl~~d 327 (502)
T PRK13369 269 DFTLIGTTDIAYEGDPEDVAADEEEIDYLLDAANRYFKEKLRREDVVHSFSGVRPLFDD 327 (502)
T ss_pred CEEEEEecCccccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCHhHEEEEeeceEEcCCC
Confidence 888999997652 25788899999999999999997 89999999999999999976
No 16
>KOG2844|consensus
Probab=99.93 E-value=1.4e-26 Score=257.55 Aligned_cols=295 Identities=20% Similarity=0.164 Sum_probs=216.0
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEE-eecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTV-IADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGL 326 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtV-IEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l 326 (728)
+...||+|||||+.|+++||||++ +|.++.| +|+....+++++.++|++... +.. +.....++..+...+.++
T Consensus 37 ~~~A~vvViggG~~g~~~~yhlak--~g~k~avlle~~~ltsgttwhtagl~~~l--r~~--dv~~qlia~~~~~l~~~l 110 (856)
T KOG2844|consen 37 PSTADVVVIGGGSLGCSTAYHLAK--RGMKGAVLLERSRLTSGTTWHTAGLLWQL--FPS--DVELQLIAHTSRVLYREL 110 (856)
T ss_pred CCcccEEEEcCCchhHHHHHHHHH--ccccceEEEeeeeeccccccccccceeec--cCC--chhHHHHHHHHHHHHHHH
Confidence 456799999999999999999999 9999554 555566778888888887662 111 122333444445555566
Q ss_pred cccccccE--E-Ecc-cccccchhhhhhcccc----cccchhccccCHHHHhhcCCC----CcceeEeEE-eeeecCccc
Q psy16975 327 LSENCGVQ--V-ING-YNLAKSEKQCAENHYL----KPVLPVYKRMSEEELAEIGPG----DWKYGIYMS-TLVIPNRIF 393 (728)
Q Consensus 327 ~~~~~Gv~--~-~~G-~~~a~~~~~~~~~~~~----~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~-~g~idp~~l 393 (728)
. +++|.. + ++| +.++.+...+.+.+.+ ..++...++|+++|.++++|. ++.+|++.| +|.+||..+
T Consensus 111 e-eEtgl~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~l 189 (856)
T KOG2844|consen 111 E-EETGLHTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGL 189 (856)
T ss_pred H-HhcCCCcceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHH
Confidence 6 477876 3 555 6677776654333222 346788999999999999997 456778778 699999999
Q ss_pred eecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEccccc
Q psy16975 394 LPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNL 472 (728)
Q Consensus 394 l~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~ 472 (728)
|++|++.|+ +.| |.|++||+ +++.+..+.+ ++|+|. .|..++.+||||| |.
T Consensus 190 C~ala~~A~--~~G-------A~viE~cpV~~i~~~~~~~----------~gVeT~--~G~iet~~~VNaa-----Gv-- 241 (856)
T KOG2844|consen 190 CQALARAAS--ALG-------ALVIENCPVTGLHVETDKF----------GGVETP--HGSIETECVVNAA-----GV-- 241 (856)
T ss_pred HHHHHHHHH--hcC-------cEEEecCCcceEEeecCCc----------cceecc--CcceecceEEech-----hH--
Confidence 999999999 888 99999999 5666544333 378887 6666666999999 99
Q ss_pred ccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHH--hhceeeeecCCc
Q psy16975 473 AKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVR--LAGAYIIPSYGG 550 (728)
Q Consensus 473 ~~S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~--~~~~YiiP~~dG 550 (728)
|++++..+.++..|++|+..+ |++|-.++.....+ .+ +++ +...|+..+.++
T Consensus 242 -WAr~Vg~m~gvkvPL~p~~H~------------------YvvT~~IeGi~s~t--~p-----~irD~DgSvylR~~~~g 295 (856)
T KOG2844|consen 242 -WAREVGAMAGVKVPLVPMHHA------------------YVVTSRIEGVSSLT--RP-----NIRDLDGSVYLRQQGDG 295 (856)
T ss_pred -HHHHhhhhcCCcccceeeeee------------------EEEecccCCccCCC--cc-----ceecccceEEEEecCCc
Confidence 999998888888999999887 34443443211111 11 233 567888888877
Q ss_pred eEEeccccccCc-----------ccccccccchhhhhhcccccccccccccceeeeeecccccce
Q psy16975 551 LVTLGGTQDYGN-----------ARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH 604 (728)
Q Consensus 551 ~vviGgt~e~~~-----------~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd 604 (728)
+..||.....- --.++|.+..+..++.+.+++|.|+++.|.+.-+|...+|||
T Consensus 296 -il~GGyE~n~i~~egv~~~~~~~lqE~DWd~F~~hlesai~r~P~l~k~~i~~~v~gpe~ftPD 359 (856)
T KOG2844|consen 296 -ILFGGYESNPIFTEGVPPGFATGLQEPDWDHFEPHLEAAIERVPVLEKAGIKSLVNGPETFTPD 359 (856)
T ss_pred -eeccccccCceeccccCCccccccccccHhhhHHHHHHHHHhCchhhhcCccceecCccccCCc
Confidence 77777643310 012367777889999999999999999999999999999999
No 17
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.92 E-value=1e-26 Score=256.89 Aligned_cols=337 Identities=18% Similarity=0.160 Sum_probs=221.8
Q ss_pred hHHHhhhhCCCCcEEEeecc-cccccCCCCccccccCCCCCCCCCchhhhhhhh----hcccccccccccccccE--E-E
Q psy16975 265 TALELQRRFPNCDVTVIADK-FNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIR----YSYDHYAGLLSENCGVQ--V-I 336 (728)
Q Consensus 265 tA~~La~~~~G~~VtVIEk~-~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~----~s~~~~~~l~~~~~Gv~--~-~ 336 (728)
|||+|++ +|++|+|||++ .++.++|++++|++++... ... ....++.. ++.+.|.++.+ .+.+ + +
T Consensus 1 ~A~~La~--~G~~V~vlE~~~~~~~gaSg~~~G~l~~~~~--~~~-~~~~~l~~~~~~~a~~l~~~l~~--~~~~~~~~~ 73 (381)
T TIGR03197 1 TAYSLAR--RGWQVTLYEQDEAPAQGASGNPQGALYPLLS--ADD-NPLSRFFLAAFLYARRFYRQLAE--AGFPFDHEW 73 (381)
T ss_pred ChHHHHh--CCCeeEEEeCCCcccccCCCChhheeeeecC--CCC-CHHHHHHHHHHHHHHHHHHHHHh--cCCCccccc
Confidence 6999999 89999999996 5889999999999998432 111 12333432 34455555542 2332 3 4
Q ss_pred cccc-cccchhhhhhc-ccccccch---hccccCHHHHhhcCCC-CcceeEeEE-eeeecCccceecccccCCCCCCCCC
Q psy16975 337 NGYN-LAKSEKQCAEN-HYLKPVLP---VYKRMSEEELAEIGPG-DWKYGIYMS-TLVIPNRIFLPWCMQKDGPSNLGER 409 (728)
Q Consensus 337 ~G~~-~a~~~~~~~~~-~~~~~~g~---~~~~L~~~el~~~~P~-~~~~G~~~~-~g~idp~~ll~~L~~~a~~~~~G~~ 409 (728)
.|++ ++.++++.+.. ...+..+. ..++++.+|+.++++. ....|++++ ++++||..++.+|++.+. + |
T Consensus 74 ~G~L~~a~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~gal~~~~~g~idp~~~~~~l~~~~~--~-G-- 148 (381)
T TIGR03197 74 CGVLQLAYDEKEAERLQKLLEQLGFPEELARWVDAEQASQLAGIPLPYGGLFFPQGGWLSPPQLCRALLAHAG--I-R-- 148 (381)
T ss_pred CceEEecCChHHHHHHHHHHHhcCCCHHHheeCCHHHHHHhcCCCCCCCceEeCCCcccChHHHHHHHHhccC--C-C--
Confidence 5654 45555443221 11222222 2568999999887764 244677777 599999999999999998 8 8
Q ss_pred CceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccc-cccccccccccEEEcccccccchhhhhhcccccc
Q psy16975 410 PSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDH-YAGLLSENCGVQVINGYNLAKSEKQCAENHYLKP 487 (728)
Q Consensus 410 ~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~-ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~lp 487 (728)
++|+++++ ++++..++. +.+.+. .+. ..++.||+|+ |. |+..|.... .+|
T Consensus 149 -----~~i~~~~~V~~i~~~~~~-----------~~v~t~--~g~~~~a~~vV~a~-----G~---~~~~l~~~~--~~p 200 (381)
T TIGR03197 149 -----LTLHFNTEITSLERDGEG-----------WQLLDA--NGEVIAASVVVLAN-----GA---QAGQLAQTA--HLP 200 (381)
T ss_pred -----cEEEeCCEEEEEEEcCCe-----------EEEEeC--CCCEEEcCEEEEcC-----Cc---ccccccccc--cCC
Confidence 99999988 455432222 123333 232 3344999999 99 999887664 478
Q ss_pred cchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCceEEeccccccCcccccc
Q psy16975 488 VLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGLVTLGGTQDYGNARLGV 567 (728)
Q Consensus 488 v~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~vviGgt~e~~~~d~~~ 567 (728)
+.|+|||++.++. ....+.+. .+.....|++|+.+|++++|++.+..+.+..+
T Consensus 201 i~p~rg~~~~~~~---------------------~~~~~~~~------~~~~~~~y~~p~~~g~~~iG~t~~~~~~~~~~ 253 (381)
T TIGR03197 201 LRPVRGQVSHLPA---------------------TEALSALK------TVLCYDGYLTPANNGEHCIGASYDRNDDDLAL 253 (381)
T ss_pred ccccccceeeccC---------------------CCcccccC------ceEeCCceecccCCCceEeecccCCCCCCCCc
Confidence 9999999752211 00001111 11123469999999999999998887777777
Q ss_pred cccchhhhhhcccccccccc-----cccceeeeeecccccce--eeeeeccccccceeeeeeeeEEeceeEEEEEeeecc
Q psy16975 568 DRFDSRAILNRTAAVRPEIL-----AAPVEKVWVGLRPYRHH--VRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKA 640 (728)
Q Consensus 568 ~~~~~~~ll~~~~~l~P~L~-----~~~I~~~waGlRP~tpd--~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~ 640 (728)
+.+..+.+++++.+++|.++ +.++++.|+|+||+|+| +.|...
T Consensus 254 ~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~G~r~~t~D~~Piig~~------------------------------ 303 (381)
T TIGR03197 254 READHAENLERLAECLPALAWASEVDISALQGRVGVRCASPDHLPLVGAV------------------------------ 303 (381)
T ss_pred CHHHHHHHHHHHHHhCcccchhhccCccccCceEEEeccCCCcCccCCCC------------------------------
Confidence 88888999999999999997 78999999999999999 322210
Q ss_pred cCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCc-eEEEEeecccCccccccCCCCceeeeeeeecc
Q psy16975 641 AGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQ-TIRIVHNYGHGGYGVTSAPGSARCAVSVFEQS 718 (728)
Q Consensus 641 ~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~-~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~~ 718 (728)
....|...+|+.|=|-+ ..+.+-+.+ .-.+|.+.||+|.|++++|++|+.++++|.+.
T Consensus 304 ----------~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~a~G~~g~G~~~ap~~g~~la~~i~~~ 362 (381)
T TIGR03197 304 ----------PDFEAIKEAYAELAKDK----------NRPIAEPAPYYPGLYVLGGLGSRGLTSAPLAAEILAAQICGE 362 (381)
T ss_pred ----------CCHHHHHHHHHHhcccc----------cccccccCCCCCCeEEEecccchHHHHHHHHHHHHHHHHhCC
Confidence 00011111233331111 111111111 01388999999999999999999999999653
No 18
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.88 E-value=4.5e-24 Score=244.66 Aligned_cols=304 Identities=13% Similarity=0.078 Sum_probs=181.3
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGL 326 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l 326 (728)
|+..+||+|||||++|+++|++|++ +|++|+|||++..++++|+++.++++........ ...++.+++.+....+
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~--rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~---~~~~l~~e~l~er~~l 77 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAG--RGLSVLLCEQDDLASATSSASTKLIHGGLRYLEH---YEFRLVREALAEREVL 77 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCccccccccccchHHHhhh---ccHHHHHHHHHHHHHH
Confidence 4567999999999999999999999 9999999999999999999999988874311111 1233444444322222
Q ss_pred cc--cc----cccEE--Ecccccccc-hhhhhhccccc--ccchhccccCHHHH---hhcCCCCcceeEeEEeeeecCcc
Q psy16975 327 LS--EN----CGVQV--INGYNLAKS-EKQCAENHYLK--PVLPVYKRMSEEEL---AEIGPGDWKYGIYMSTLVIPNRI 392 (728)
Q Consensus 327 ~~--~~----~Gv~~--~~G~~~a~~-~~~~~~~~~~~--~~g~~~~~L~~~el---~~~~P~~~~~G~~~~~g~idp~~ 392 (728)
.+ +. ..+.+ ..++..... ...+.....+. ......+.+..++. ..+.| +...|+.++++++||..
T Consensus 78 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~-~l~g~~~~~dg~vd~~r 156 (508)
T PRK12266 78 LRMAPHIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKP-EITRGFEYSDCWVDDAR 156 (508)
T ss_pred HHhCCCcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcch-hhcEEEEEcCcccCHHH
Confidence 11 01 11101 000000000 00000000000 00011111111110 11112 34567777789999999
Q ss_pred ceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEEcccc
Q psy16975 393 FLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYN 471 (728)
Q Consensus 393 ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~ 471 (728)
++.+++..+. ++| ++++++++ +++....+.+...+.+ ..+. ....+.++.||||+ |+
T Consensus 157 l~~~l~~~A~--~~G-------a~i~~~~~V~~i~~~~~~~~v~~~~------~~~g-~~~~i~a~~VVnAa-----G~- 214 (508)
T PRK12266 157 LVVLNARDAA--ERG-------AEILTRTRVVSARRENGLWHVTLED------TATG-KRYTVRARALVNAA-----GP- 214 (508)
T ss_pred HHHHHHHHHH--HcC-------CEEEcCcEEEEEEEeCCEEEEEEEE------cCCC-CEEEEEcCEEEECC-----Cc-
Confidence 9999999988 888 99999998 4554332222100110 0000 01234445999999 99
Q ss_pred cccchhhhhhc-cc--ccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecC
Q psy16975 472 LAKSEKQCAEN-HY--LKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSY 548 (728)
Q Consensus 472 ~~~S~~L~~~~-gi--~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~ 548 (728)
|+.++.... +. ..++.|.+|+.++ ++.....+...- ++ .-.....|++|..
T Consensus 215 --wa~~l~~~~~g~~~~~~i~p~kG~~lv---------------------l~~~~~~~~~~~--~~-~~dgr~v~~~P~~ 268 (508)
T PRK12266 215 --WVKQFLDDGLGLPSPYGIRLVKGSHIV---------------------VPRLFDHDQAYI--LQ-NPDGRIVFAIPYE 268 (508)
T ss_pred --cHHHHHhhccCCCCCcceeeeeeEEEE---------------------ECCcCCCCcEEE--Ee-CCCCCEEEEEEeC
Confidence 998887642 32 3478899998542 100000000000 00 0012346789998
Q ss_pred CceEEecccccc---Ccccccccccchhhhhhccccccc-ccccccceeeeeecccccce
Q psy16975 549 GGLVTLGGTQDY---GNARLGVDRFDSRAILNRTAAVRP-EILAAPVEKVWVGLRPYRHH 604 (728)
Q Consensus 549 dG~vviGgt~e~---~~~d~~~~~~~~~~ll~~~~~l~P-~L~~~~I~~~waGlRP~tpd 604 (728)
+|.+++|+|.++ ...+..++.+.++.|++.+.+++| .|...+|++.|+|+||.++|
T Consensus 269 ~g~~liGttd~~~~~~~~~~~~~~~~i~~Ll~~~~~~~p~~l~~~~ii~~waG~RPl~~d 328 (508)
T PRK12266 269 DDFTLIGTTDVEYKGDPAKVAISEEEIDYLCKVVNRYFKKQLTPADVVWTYSGVRPLCDD 328 (508)
T ss_pred CCeEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCHHHEEEEeeeeEeeCCC
Confidence 888999998754 234667888999999999999996 89999999999999999987
No 19
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.88 E-value=2e-23 Score=244.29 Aligned_cols=305 Identities=14% Similarity=0.076 Sum_probs=189.8
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCC-C------CCCchhhhhhhhhccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNF-M------GPDLETTKEWIRYSYD 321 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l-~------~~~~~~~~~~~~~s~~ 321 (728)
..+||+||||||+|+++||+|++ +|++|+|||++.+++++|+++.++++..... . +.....+...+...++
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~--rGl~V~LvE~~d~a~GtSsrss~lihgg~ryl~~~~~~~~~~~~~l~~e~l~er~ 147 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAAT--RGLRVGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFQLDYGQLKLVFHALEERK 147 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccCCCcccchhhhhhhHHHHHHHHhhCCCccceeehHHHHHHHH
Confidence 45899999999999999999999 9999999999999999999998887663100 0 0000011111211111
Q ss_pred cc----ccccccccccEEEcccccccchh---hhhhcccc--cccchhccccCHHHHhhcCCC---C-----cceeEeEE
Q psy16975 322 HY----AGLLSENCGVQVINGYNLAKSEK---QCAENHYL--KPVLPVYKRMSEEELAEIGPG---D-----WKYGIYMS 384 (728)
Q Consensus 322 ~~----~~l~~~~~Gv~~~~G~~~a~~~~---~~~~~~~~--~~~g~~~~~L~~~el~~~~P~---~-----~~~G~~~~ 384 (728)
.+ ..+.+ ..+..... +....... .+.....+ .......++|+++|+.+++|. . ..+++.+.
T Consensus 148 ~l~~~ap~l~~-~l~~~~p~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P~L~~~~~~~~l~ga~~~~ 225 (627)
T PLN02464 148 QLIENAPHLCH-ALPIMTPC-YDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPTLAKKGKDGSLKGTVVYY 225 (627)
T ss_pred HHHhhChhhcc-ccceeeec-cchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCCCCCccccccceeEEEEec
Confidence 11 11111 11111110 00000000 00001111 111224688999999999997 2 34456556
Q ss_pred eeeecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEe--cccccc-ccCCcchhHHHHhhhcccccccccc
Q psy16975 385 TLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVR--GPLHEK-VSSGPRTCAMQRAMQHDHYAGLLSE 460 (728)
Q Consensus 385 ~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~--g~~v~~-l~~~~~v~~v~t~~~~g~ada~~VV 460 (728)
++++||..++.+|++.+. ++| ++|+++++ +++.... +.+..- +.+ ..+. ....+.++.||
T Consensus 226 Dg~vdp~rl~~al~~~A~--~~G-------a~i~~~~~V~~l~~~~~~g~v~gV~v~d------~~tg-~~~~i~a~~VV 289 (627)
T PLN02464 226 DGQMNDSRLNVALACTAA--LAG-------AAVLNYAEVVSLIKDESTGRIVGARVRD------NLTG-KEFDVYAKVVV 289 (627)
T ss_pred CcEEcHHHHHHHHHHHHH--hCC-------cEEEeccEEEEEEEecCCCcEEEEEEEE------CCCC-cEEEEEeCEEE
Confidence 799999999999999999 888 99999988 4554331 222110 100 0011 01123444999
Q ss_pred ccccEEEcccccccchhhhhhcc-ccc-ccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHH
Q psy16975 461 NCGVQVINGYNLAKSEKQCAENH-YLK-PVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVR 538 (728)
Q Consensus 461 nAa~~viaG~~~~~S~~L~~~~g-i~l-pv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~ 538 (728)
||+ |+ |+.++..+.+ ... ++.|.||+.+. ++ ....|......++....
T Consensus 290 nAa-----Ga---ws~~l~~~~g~~~~~~I~p~kG~hlv---------------------l~-~~~~~~~~~~i~~~~~d 339 (627)
T PLN02464 290 NAA-----GP---FCDEVRKMADGKAKPMICPSSGVHIV---------------------LP-DYYSPEGMGLIVPKTKD 339 (627)
T ss_pred ECC-----CH---hHHHHHHhccCcCCCceEeeeeEEEe---------------------cc-cccCCCCceEEecCCCC
Confidence 999 99 9999987664 122 48899997432 10 00001000000000112
Q ss_pred hhceeeeecCCceEEecccccc--Ccccccccccchhhhhhccccccc-ccccccceeeeeecccccce
Q psy16975 539 LAGAYIIPSYGGLVTLGGTQDY--GNARLGVDRFDSRAILNRTAAVRP-EILAAPVEKVWVGLRPYRHH 604 (728)
Q Consensus 539 ~~~~YiiP~~dG~vviGgt~e~--~~~d~~~~~~~~~~ll~~~~~l~P-~L~~~~I~~~waGlRP~tpd 604 (728)
....|++|. +|.+++|+|.+. .+.+..+++++++.|++.+.++|| .|...+|++.|+|+||..+|
T Consensus 340 gr~~~~~P~-~g~~liGtTd~~~~~~~~~~~t~~ei~~Ll~~a~~~~~~~l~~~~v~~~waG~RPl~~d 407 (627)
T PLN02464 340 GRVVFMLPW-LGRTVAGTTDSKTPITMLPEPHEDEIQFILDAISDYLNVKVRRSDVLSAWSGIRPLAVD 407 (627)
T ss_pred CCEEEEEec-CCcEEEecCCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCChhhEEEEEEeEEeeccC
Confidence 345899999 778999998876 345667778999999999999999 79999999999999999987
No 20
>KOG2853|consensus
Probab=99.87 E-value=5.2e-23 Score=214.43 Aligned_cols=350 Identities=18% Similarity=0.155 Sum_probs=218.0
Q ss_pred cCcceEEEeecceechhhHHHhhhhC--CCCcEEEeecccccccCC-CCc-cccccCCCCCCCCCchhhhhhhhhccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKFNMDTTS-DGA-AGLFEPSPNFMGPDLETTKEWIRYSYDHY 323 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~--~G~~VtVIEk~~~g~gAS-~~a-gGii~p~~~l~~~~~~~~~~~~~~s~~~~ 323 (728)
+.++||+|||||.+|+|+||+|.++. .|++|+|+|++.....+| ..+ ||+...+ +- ++..+++..+.+++
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQF---Sl---pEnIqmSLF~a~Fl 157 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQF---SL---PENIQMSLFTAEFL 157 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeec---cc---chhhhhhhHHHHHH
Confidence 35789999999999999999999843 479999999987654444 344 6666653 22 25666776666666
Q ss_pred ccccc-------cccccEE-Ecccccccchhhhhhc----ccccccchhccccCHHHHhhcCCCCcceeEeE-----E-e
Q psy16975 324 AGLLS-------ENCGVQV-INGYNLAKSEKQCAEN----HYLKPVLPVYKRMSEEELAEIGPGDWKYGIYM-----S-T 385 (728)
Q Consensus 324 ~~l~~-------~~~Gv~~-~~G~~~a~~~~~~~~~----~~~~~~g~~~~~L~~~el~~~~P~~~~~G~~~-----~-~ 385 (728)
+..-+ ++.++.+ .+||++..++++.+.. +...+.|...+.|+++++.+++|+....|+.+ . .
T Consensus 158 r~a~ehl~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~E 237 (509)
T KOG2853|consen 158 RNAREHLGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKE 237 (509)
T ss_pred HHHHHhhccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccc
Confidence 54332 2334444 6798776555554321 22356788999999999999999832333332 2 5
Q ss_pred eeecCccceecccccCCCCCCCCCCceeeEEEEEeeCceeEEEeccccccccCCc-------chhH--HHHhh-hccccc
Q psy16975 386 LVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGP-------RTCA--MQRAM-QHDHYA 455 (728)
Q Consensus 386 g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~~~V~~~~g~~v~~l~~~~-------~v~~--v~t~~-~~g~ad 455 (728)
||+||+.++..+.+.+. .+| |.+....-+++++..-+-+..+.+++ ++.+ |+... .....+
T Consensus 238 Gwfdpw~LLs~~rrk~~--~lG-------v~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk 308 (509)
T KOG2853|consen 238 GWFDPWALLSGIRRKAI--TLG-------VQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVK 308 (509)
T ss_pred cccCHHHHHHHHHHHhh--hhc-------ceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCcee
Confidence 99999999999999998 777 55544332333333222111111221 1101 11000 011222
Q ss_pred cccccccccEEEcccccccchhhhhhcc---------cccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccc
Q psy16975 456 GLLSENCGVQVINGYNLAKSEKQCAENH---------YLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLP 526 (728)
Q Consensus 456 a~~VVnAa~~viaG~~~~~S~~L~~~~g---------i~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P 526 (728)
+..+|||+ |+ ||.+++..++ ..+|+.|.|.++. ++. ....|
T Consensus 309 ~al~V~aA-----Ga---~s~QvArlAgIG~g~g~L~vplPiepRKRyvy---------------------vi~-~~~~P 358 (509)
T KOG2853|consen 309 FALCVNAA-----GA---WSGQVARLAGIGKGPGLLAVPLPIEPRKRYVY---------------------VIF-APDVP 358 (509)
T ss_pred EEEEEecc-----Cc---cHHHHHHHhccCCCCceeeecccCCccceeEE---------------------EEe-CCCCC
Confidence 23788888 99 9888776544 3467777777753 221 11234
Q ss_pred hhcccchHHHHHhhceeeeecC-CceEEecccccc----Ccccccccccc-hhhhhhcccccccccccccceeeeeeccc
Q psy16975 527 WCMQKNFASLVRLAGAYIIPSY-GGLVTLGGTQDY----GNARLGVDRFD-SRAILNRTAAVRPEILAAPVEKVWVGLRP 600 (728)
Q Consensus 527 ~l~~~~~~~~i~~~~~YiiP~~-dG~vviGgt~e~----~~~d~~~~~~~-~~~ll~~~~~l~P~L~~~~I~~~waGlRP 600 (728)
.+.. |-+++..+.|++... .+..++|-+... +..+..+|.+. .+.++..+...+|.+..++|...|+|++.
T Consensus 359 Gl~~---Pl~iDpsG~f~Rrdglg~nfl~grsp~ed~~~d~~nldVD~d~F~qkiwP~L~nRVP~fetakVqsaWaGyyD 435 (509)
T KOG2853|consen 359 GLDT---PLTIDPSGVFFRRDGLGGNFLCGRSPSEDEEPDHSNLDVDHDYFYQKIWPHLANRVPAFETAKVQSAWAGYYD 435 (509)
T ss_pred CCCC---ceeECCCccEEEecCCCCceecccCCccccCCCccccccChHHHHhhhhHHHHhcccccceeeeeehhccccc
Confidence 3332 113334577887765 445666655221 22334555554 56889999999999999999999999876
Q ss_pred cc-ceeeeeeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcce
Q psy16975 601 YR-HHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMH 679 (728)
Q Consensus 601 ~t-pd~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~ 679 (728)
.- -| .+|| +|.-
T Consensus 436 ~NtfD-----------------------------------~ngV-------------------------iG~H------- 448 (509)
T KOG2853|consen 436 HNTFD-----------------------------------DNGV-------------------------IGEH------- 448 (509)
T ss_pred ccccc-----------------------------------cCCc-------------------------ccCC-------
Confidence 52 12 0000 1111
Q ss_pred EEeecCceEEEEeecccCccccccCCCCceeeeeeeec
Q psy16975 680 VIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQ 717 (728)
Q Consensus 680 ~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~ 717 (728)
|. ...++-+.|++|+|++-|++.++.+++||-+
T Consensus 449 --P~---y~Nly~atGFsghGvqqs~avgRAiaElIld 481 (509)
T KOG2853|consen 449 --PL---YTNLYMATGFSGHGVQQSPAVGRAIAELILD 481 (509)
T ss_pred --cc---eeeeeeeecccccchhcchHHHHHHHHHHhc
Confidence 11 1347788999999999999999999998754
No 21
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.87 E-value=9.7e-23 Score=225.30 Aligned_cols=340 Identities=16% Similarity=0.143 Sum_probs=232.3
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccccccCCCCCCCCCchhhhhhhhhccccccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLL 327 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~ 327 (728)
+.+||+||||||+|+++|++|++..++++|+||||.. ++..+|++|+|.++...+ +.+ .+..++++......+.++.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~-y~p-~slka~l~~~g~~~~~~~~ 79 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLY-YTP-GSLKAKLCVAGNINEFAIC 79 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceecccc-CCC-cchhhHHHHHHHHHHHHHH
Confidence 5789999999999999999999955559999999964 788899999999998642 222 3577888888888777776
Q ss_pred ccccccEE-Eccc-ccccchhhhhhc----ccccccch-hccccCHHHHhhcCCC---CcceeEeEE-eeeecCccceec
Q psy16975 328 SENCGVQV-INGY-NLAKSEKQCAEN----HYLKPVLP-VYKRMSEEELAEIGPG---DWKYGIYMS-TLVIPNRIFLPW 396 (728)
Q Consensus 328 ~~~~Gv~~-~~G~-~~a~~~~~~~~~----~~~~~~g~-~~~~L~~~el~~~~P~---~~~~G~~~~-~g~idp~~ll~~ 396 (728)
+ +.++.+ ..|. .++.++++.+.. +.....+. +.+.+|.+++++++|. +...|++.+ ++.+|+..++.+
T Consensus 80 k-q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~ 158 (429)
T COG0579 80 K-QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRA 158 (429)
T ss_pred H-HhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHH
Confidence 4 677776 4464 556666665422 22333444 4899999999999997 244566667 599999999999
Q ss_pred ccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccc--cccccccccccEEEcccccc
Q psy16975 397 CMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDH--YAGLLSENCGVQVINGYNLA 473 (728)
Q Consensus 397 L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~--ada~~VVnAa~~viaG~~~~ 473 (728)
|++.++ ++| ++++.|++ ++++...+.+. .+.+. .+. +.|+.||||+ |.
T Consensus 159 l~e~a~--~~g-------~~i~ln~eV~~i~~~~dg~~----------~~~~~--~g~~~~~ak~Vin~A-----Gl--- 209 (429)
T COG0579 159 LAEEAQ--ANG-------VELRLNTEVTGIEKQSDGVF----------VLNTS--NGEETLEAKFVINAA-----GL--- 209 (429)
T ss_pred HHHHHH--HcC-------CEEEecCeeeEEEEeCCceE----------EEEec--CCcEEEEeeEEEECC-----ch---
Confidence 999999 888 99999999 56665543111 12222 222 4566999999 99
Q ss_pred cchhhhhhcccc--cccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCce
Q psy16975 474 KSEKQCAENHYL--KPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGL 551 (728)
Q Consensus 474 ~S~~L~~~~gi~--lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~ 551 (728)
.|..|+.+.++. ..+.|++|+.+....+. ..-+.+++. ..+.|... ..+.++.|..||.
T Consensus 210 ~Ad~la~~~g~~~~~~~~P~~G~y~~~~~~~--------~~~~~~~Iy--~~p~~~~p---------~~gV~~~~~idG~ 270 (429)
T COG0579 210 YADPLAQMAGIPEDFKIFPVRGEYLVLDNEV--------KALLRHKIY--PVPNPGLP---------GLGVHHTPTIDGS 270 (429)
T ss_pred hHHHHHHHhCCCcccccCccceEEEEEcccc--------cccccceee--cCCCCCCC---------CCcceeecccCCe
Confidence 777787776642 35788888854222100 000111111 00111000 2356777888999
Q ss_pred EEeccccccC----cccccccccchhhhhhcccccccccc-cccceeeeeecccccceeeee--eccccccceeeeeeee
Q psy16975 552 VTLGGTQDYG----NARLGVDRFDSRAILNRTAAVRPEIL-AAPVEKVWVGLRPYRHHVRVE--RDLTGAAQYLTWYPVF 624 (728)
Q Consensus 552 vviGgt~e~~----~~d~~~~~~~~~~ll~~~~~l~P~L~-~~~I~~~waGlRP~tpd~Rie--~e~~~~~~~~~~l~~~ 624 (728)
+++|.+.... ..+...+.+..+.+.......+|.+. .-..+..++|.||+..+.+.. ...+....-.+| ++
T Consensus 271 ~l~GP~A~~~~~~~k~~~~~~~d~~d~v~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~ip~~~~~~~--~~ 348 (429)
T COG0579 271 LLFGPNALDSPKFLKGDRGVDFDLLDSVRKANSRGMPDLGIKNNVLANYAGIRPILKEPRLPALDFIIPEAKDEDW--FI 348 (429)
T ss_pred EEECCCcccchhhhccccccccchhhhHHHhhhhhcccccccccchhhhheeccccccccccccceecccccCCCC--ce
Confidence 9999887664 23356778888889999999999998 667888999999963221110 000111111234 56
Q ss_pred EEeceeEEEEEeeeccc
Q psy16975 625 KVYGITSVLFVHRFKAA 641 (728)
Q Consensus 625 ~~~G~~~~g~~~~~~~~ 641 (728)
.++|+.++|+++.-..+
T Consensus 349 ~~aGiRsq~lt~~~a~~ 365 (429)
T COG0579 349 NVAGIRSQGLTADPAIA 365 (429)
T ss_pred eeeeEEccccccChhHh
Confidence 89999999999887654
No 22
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.85 E-value=1.5e-22 Score=232.59 Aligned_cols=282 Identities=11% Similarity=0.124 Sum_probs=194.6
Q ss_pred HHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccccccccccccEEEcc-cccccc
Q psy16975 266 ALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLSENCGVQVING-YNLAKS 344 (728)
Q Consensus 266 A~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~l~~~~~Gv~~~~G-~~~a~~ 344 (728)
|++|++ +|.+|+||||+.++++||++|+|+++........ .....+.+....+.|.++.. .. + ...| +.++.+
T Consensus 1 ArdLa~--rGl~V~llEk~d~~~GaS~rnsglih~G~ry~~~-~~~~a~~~~~~~~~l~~~a~-~~-~-~~~g~L~va~~ 74 (516)
T TIGR03377 1 MRDLAL--RGLRCILLEQGDLAHGTTGRNHGLLHSGARYAVT-DQESARECIEENRILKRIAR-HC-V-EDTGGLFITLP 74 (516)
T ss_pred ChhHHH--CCCCEEEEeCCCcccccccccccCcCcchhhhcc-CHHHHHHHHHHHHHHHHhCh-Hh-c-cCCCceEEecC
Confidence 789999 9999999999999999999999999875321111 23455666666666666652 21 1 2334 344433
Q ss_pred hhhhhh----cccccccchhccccCHHHHhhcCCC---CcceeEeEEeeeecCccceecccccCCCCCCCCCCceeeEEE
Q psy16975 345 EKQCAE----NHYLKPVLPVYKRMSEEELAEIGPG---DWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVEL 417 (728)
Q Consensus 345 ~~~~~~----~~~~~~~g~~~~~L~~~el~~~~P~---~~~~G~~~~~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I 417 (728)
+++... .......+.+.++|+++|+.+++|. +..+|++++++++||..++.+|++.+. ++| ++|
T Consensus 75 ~~~~~~~~~~~~~~~~~gi~~~~l~~~e~~~~~P~l~~~~~ga~~~~dg~vdp~~l~~al~~~A~--~~G-------a~i 145 (516)
T TIGR03377 75 EDDLEFQKQFLAACREAGIPAEEIDPAEALRLEPNLNPDLIGAVKVPDGTVDPFRLVAANVLDAQ--EHG-------ARI 145 (516)
T ss_pred cccHHHHHHHHHHHHHCCCCceEECHHHHHHHCCCCChhheEEEEeCCcEECHHHHHHHHHHHHH--HcC-------CEE
Confidence 333211 1223445677899999999999996 345678888899999999999999998 888 999
Q ss_pred EEeeC-ceeEEEecccccc-ccCCcchhHHHHhhhccccccccccccccEEEcccccccchhhhhhcccccccchhcccc
Q psy16975 418 YHYNR-DSLTVVRGPLHEK-VSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRM 495 (728)
Q Consensus 418 ~e~t~-~~V~~~~g~~v~~-l~~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~lpv~PvRGQl 495 (728)
+++++ +++...++.+..- +.+ ..+. ....+.++.||||| |+ |+..+....+...++.|.||++
T Consensus 146 ~~~t~V~~i~~~~~~v~gv~v~~------~~~g-~~~~i~a~~VVnAa-----G~---wa~~l~~~~g~~~~i~p~kG~~ 210 (516)
T TIGR03377 146 FTYTKVTGLIREGGRVTGVKVED------HKTG-EEERIEAQVVINAA-----GI---WAGRIAEYAGLDIRMFPAKGAL 210 (516)
T ss_pred EcCcEEEEEEEECCEEEEEEEEE------cCCC-cEEEEEcCEEEECC-----Cc---chHHHHHhcCCCCceecceEEE
Confidence 99999 5565443332110 110 0000 01234455999999 99 9999988777678899999996
Q ss_pred CHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHH-HhhceeeeecCCceEEeccccccC--cccccccccch
Q psy16975 496 SEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLV-RLAGAYIIPSYGGLVTLGGTQDYG--NARLGVDRFDS 572 (728)
Q Consensus 496 ~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i-~~~~~YiiP~~dG~vviGgt~e~~--~~d~~~~~~~~ 572 (728)
+ +++.......+.. +. .....|++|. ++.+++|+|.+.. .++..++.+.+
T Consensus 211 l---------------------v~~~~~~~~~~~~-----~~~~~~g~~~~P~-~~~~liGtT~~~~~~~~~~~~~~~~v 263 (516)
T TIGR03377 211 L---------------------IMNHRINNTVINR-----CRKPSDADILVPG-DTISIIGTTSERIDDPDDLPVTQEEV 263 (516)
T ss_pred E---------------------EECCccccccccc-----ccCCCCCcEEEEC-CCeEEEecCCCCCCCCCCCCCCHHHH
Confidence 4 2211000000000 11 1234688896 5678999998762 34567888899
Q ss_pred hhhhhcccccccccccccceeeeeecccccce
Q psy16975 573 RAILNRTAAVRPEILAAPVEKVWVGLRPYRHH 604 (728)
Q Consensus 573 ~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd 604 (728)
+.+++.+.+++|.|...+|++.|+|+||...+
T Consensus 264 ~~ll~~~~~~~P~l~~~~i~~~~aGvRPl~~~ 295 (516)
T TIGR03377 264 DVLLREGAKLAPMLAQTRILRAFAGVRPLVAV 295 (516)
T ss_pred HHHHHHHHHhCcccccCCEEEEEeecccccCC
Confidence 99999999999999999999999999998754
No 23
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.81 E-value=1.5e-20 Score=211.78 Aligned_cols=303 Identities=14% Similarity=0.125 Sum_probs=196.0
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcc---ccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSY---DHY 323 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~---~~~ 323 (728)
.+.++||+||||||.|+-+|+.++. +|++|+++|++..++|||+++.++++........ ....+.+++. +.+
T Consensus 9 ~~~~~DviVIGGGitG~GiArDaA~--RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~---~e~~lvrEal~Er~vL 83 (532)
T COG0578 9 RMEEFDVIVIGGGITGAGIARDAAG--RGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQ---YEFSLVREALAEREVL 83 (532)
T ss_pred cccCCCEEEECCchhhHHHHHHHHh--CCCeEEEEecCcccCcccCccccCccchhhhhhh---cchHHHHHHHHHHHHH
Confidence 3478999999999999999999999 9999999999999999999999999885321111 1112222222 223
Q ss_pred ccccccccccEEEcccccccc--hhhh--h----hc---ccccccchhccccCHHHHhhcCCC----CcceeEeEEeeee
Q psy16975 324 AGLLSENCGVQVINGYNLAKS--EKQC--A----EN---HYLKPVLPVYKRMSEEELAEIGPG----DWKYGIYMSTLVI 388 (728)
Q Consensus 324 ~~l~~~~~Gv~~~~G~~~a~~--~~~~--~----~~---~~~~~~g~~~~~L~~~el~~~~P~----~~~~G~~~~~g~i 388 (728)
.+.+. .+ +.-..+++...+ .+.. . .. ...++..+..+.++.++...++|. ...+|+.|+++++
T Consensus 84 ~~~AP-H~-v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v 161 (532)
T COG0578 84 LRIAP-HL-VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV 161 (532)
T ss_pred HHhCc-cc-cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee
Confidence 33321 11 111112211111 1111 0 01 111233456778888888888986 2345899999999
Q ss_pred cCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccccccccccccEEE
Q psy16975 389 PNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVI 467 (728)
Q Consensus 389 dp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ada~~VVnAa~~vi 467 (728)
|+.+++...++.+. .+| ++|.++++ +++....+ + ..++-. ...+. ......++.|||||
T Consensus 162 ddaRLv~~~a~~A~--~~G-------a~il~~~~v~~~~re~~-v-~gV~~~----D~~tg-~~~~ira~~VVNAa---- 221 (532)
T COG0578 162 DDARLVAANARDAA--EHG-------AEILTYTRVESLRREGG-V-WGVEVE----DRETG-ETYEIRARAVVNAA---- 221 (532)
T ss_pred chHHHHHHHHHHHH--hcc-------cchhhcceeeeeeecCC-E-EEEEEE----ecCCC-cEEEEEcCEEEECC----
Confidence 99999999999998 888 99999999 45554443 1 111100 00110 01134444999999
Q ss_pred cccccccchhhhhhcccc----cccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhcee
Q psy16975 468 NGYNLAKSEKQCAENHYL----KPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAY 543 (728)
Q Consensus 468 aG~~~~~S~~L~~~~gi~----lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~Y 543 (728)
|. |+.+++...+.. ..+.|.+|..+ +++. ..|......+++--.....+
T Consensus 222 -Gp---W~d~i~~~~~~~~~~~~~vr~skGsHl---------------------Vv~~--~~~~~~a~~~~~~~d~r~~f 274 (532)
T COG0578 222 -GP---WVDEILEMAGLEQSPHIGVRPSKGSHL---------------------VVDK--KFPINQAVINRCRKDGRIVF 274 (532)
T ss_pred -Cc---cHHHHHHhhcccCCCCccceeccceEE---------------------Eecc--cCCCCceEEeecCCCCceEE
Confidence 99 999988776432 25888888743 3311 11211110000000134567
Q ss_pred eeecCCceEEeccccccC---cccccccccchhhhhhccc-ccccccccccceeeeeecccccce
Q psy16975 544 IIPSYGGLVTLGGTQDYG---NARLGVDRFDSRAILNRTA-AVRPEILAAPVEKVWVGLRPYRHH 604 (728)
Q Consensus 544 iiP~~dG~vviGgt~e~~---~~d~~~~~~~~~~ll~~~~-~l~P~L~~~~I~~~waGlRP~tpd 604 (728)
++|..+.. ++|.|...- ..+..+++++++.|++.+. .+-|.+...+|+..|+|+||.-.|
T Consensus 275 ~iP~~~~~-liGTTD~~~~~~~~~~~~~~eEidyll~~~~~~~~~~l~~~dI~~syaGVRPL~~~ 338 (532)
T COG0578 275 AIPYEGKT-LIGTTDTDYDGDPEDPRITEEEIDYLLDAVNRYLAPPLTREDILSTYAGVRPLVDD 338 (532)
T ss_pred EecCCCCE-EeeccccccCCCcccCCCCHHHHHHHHHHHHhhhhccCChhheeeeeeeeeeccCC
Confidence 88887774 999997662 3557789999999999999 667788999999999999999774
No 24
>KOG2820|consensus
Probab=99.80 E-value=2e-20 Score=195.95 Aligned_cols=339 Identities=17% Similarity=0.144 Sum_probs=222.9
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc--cCCCCccccccCCCCCCCCCchhhhhhhhhcccccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD--TTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYA 324 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~--gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~ 324 (728)
|.+..||+||||||.||||||+|++ +|.++.+||+..++. |+|....-++++.+ ....+.++..++++.|.
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK--~g~killLeqf~~ph~~GSShg~sRIiR~~Y-----~e~~Y~~m~~ea~e~W~ 76 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAK--RGDKILLLEQFPLPHSRGSSHGISRIIRPAY-----AEDKYMSMVLEAYEKWR 76 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHh--cCCeEEEEeccCCCcccCcccCcceeechhh-----hhHHHHHHHHHHHHHHH
Confidence 5567899999999999999999999 899999999988764 67777778888843 23468889999999999
Q ss_pred cccccccccEEEccc--ccccchh--hhh-hcccccccchhccccCHHHHhhcCCC-----CcceeEeEE-eeeecCccc
Q psy16975 325 GLLSENCGVQVINGY--NLAKSEK--QCA-ENHYLKPVLPVYKRMSEEELAEIGPG-----DWKYGIYMS-TLVIPNRIF 393 (728)
Q Consensus 325 ~l~~~~~Gv~~~~G~--~~a~~~~--~~~-~~~~~~~~g~~~~~L~~~el~~~~P~-----~~~~G~~~~-~g~idp~~l 393 (728)
++.. +.|..+..|. +...+.+ ++. ....++..+...+.++.+|+++++|. +--.|+.-+ +|++++.+.
T Consensus 77 ~~~~-~~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~ks 155 (399)
T KOG2820|consen 77 NLPE-ESGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKS 155 (399)
T ss_pred hChh-hhceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHH
Confidence 9874 7777765543 3333332 121 22444566778899999999999994 112344444 699999999
Q ss_pred eecccccCCCCCCCCCCceeeEEEEEeeCceeEEEeccccccccCCcchhHHHHhhhccc-cccccccccccEEEccccc
Q psy16975 394 LPWCMQKDGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDH-YAGLLSENCGVQVINGYNL 472 (728)
Q Consensus 394 l~~L~~~a~~~~~G~~~~~l~v~I~e~t~~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~-ada~~VVnAa~~viaG~~~ 472 (728)
+++|...++ ..| +.++.+..+ .+...+.+++..+.|.|. .+. +.++.+|+++ |+
T Consensus 156 lk~~~~~~~--~~G-------~i~~dg~~v-------~~~~~~~e~~~~v~V~Tt--~gs~Y~akkiI~t~-----Ga-- 210 (399)
T KOG2820|consen 156 LKALQDKAR--ELG-------VIFRDGEKV-------KFIKFVDEEGNHVSVQTT--DGSIYHAKKIIFTV-----GA-- 210 (399)
T ss_pred HHHHHHHHH--HcC-------eEEecCcce-------eeEeeccCCCceeEEEec--cCCeeecceEEEEe-----cH--
Confidence 999999999 888 666665551 111113344445567766 443 5555999999 99
Q ss_pred ccchhhhhh-cccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecC-Cc
Q psy16975 473 AKSEKQCAE-NHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSY-GG 550 (728)
Q Consensus 473 ~~S~~L~~~-~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~-dG 550 (728)
|...|++. +++..||.|++-.+. + |+ ++ ...|. . +..+...|++|.. +.
T Consensus 211 -Wi~klL~~~~~~~~Pv~~i~ltvc--y--------wk------~~-----~~~~~--~-----l~~d~~f~~F~~~~~~ 261 (399)
T KOG2820|consen 211 -WINKLLPTSLAIGFPVAPIQLTVC--Y--------WK------TK-----KNMPV--Y-----LFDDDCFYAFPPYPDT 261 (399)
T ss_pred -HHHhhcCcccccCCccceeEeehh--h--------he------ee-----cCCce--e-----ecCCCCceeccCCCCc
Confidence 99999874 455578888765432 1 21 11 01111 0 1113334444332 22
Q ss_pred e-EEecccc-c----------------c---Ccccccccccchhhhhhcccccccccccccceeeeeecccccce--eee
Q psy16975 551 L-VTLGGTQ-D----------------Y---GNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHH--VRV 607 (728)
Q Consensus 551 ~-vviGgt~-e----------------~---~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd--~Ri 607 (728)
. +..|-.. + + +.....+....++.+..-..++.|.+.+-...+.-.+++-.||| +.|
T Consensus 262 ~~~~ya~p~~eYpg~~k~~yh~g~~v~~~~~~~p~~~s~~~~idl~~~f~~~~~p~l~~~~p~~t~~C~YT~TpD~~Fvi 341 (399)
T KOG2820|consen 262 KLIKYALPGYEYPGLMKVDYHEGSKVVPIDPDGPPKRSLPKAIDLMRRFLRTFGPDLDDRSPINTKMCMYTDTPDANFVI 341 (399)
T ss_pred ceEEeccCCCCCcceEEEeecCCCcCCCCCCCCCcccCcchHHHHHHHHHHHhCccccCCCcceeeEEEeeCCCCcCeee
Confidence 1 2222110 0 0 11111223334555556667789999988888889999999999 433
Q ss_pred eeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCce
Q psy16975 608 ERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQT 687 (728)
Q Consensus 608 e~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~ 687 (728)
... | |-
T Consensus 342 D~~-----------------------------------------------------------------------P---~~ 347 (399)
T KOG2820|consen 342 DKH-----------------------------------------------------------------------P---QY 347 (399)
T ss_pred ecC-----------------------------------------------------------------------C---Cc
Confidence 220 1 11
Q ss_pred EEEEeecccCccccccCCCCceeeeeeeeccccc
Q psy16975 688 IRIVHNYGHGGYGVTSAPGSARCAVSVFEQSHKA 721 (728)
Q Consensus 688 ~~v~h~yGhgg~G~t~s~g~A~~~~~l~~~~~~~ 721 (728)
-.|+-.-|.+|+||-++|++++.+++++-+.+.+
T Consensus 348 ~Nv~Vg~G~SGHGFK~aP~iGk~lae~~~~~~~e 381 (399)
T KOG2820|consen 348 DNVFVGGGGSGHGFKFAPNIGKYLAEMAMGDLSE 381 (399)
T ss_pred ccEEEecCCCCcceeecchHHHHHHHHhhhcccc
Confidence 2466677889999999999999999988776653
No 25
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.73 E-value=2.1e-18 Score=196.51 Aligned_cols=222 Identities=11% Similarity=0.080 Sum_probs=145.0
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCC--CCccccccCCCCCCCCCchhhhhhhhhccccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTS--DGAAGLFEPSPNFMGPDLETTKEWIRYSYDHY 323 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS--~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~ 323 (728)
....+||+||||||+|+++||+|++..++.+|+||||.. ++.++| ..|+|.++... ......+..++++.++.+.+
T Consensus 42 ~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~aS~~~nnsg~iHag~-~~~~y~~~kA~~~~~~~~~~ 120 (497)
T PTZ00383 42 GSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGKNNSQTIHCGD-IETNYTLEKARKVKRQADML 120 (497)
T ss_pred cCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhcccCCCCCCcccccee-ehhcCCHHHHHHHHHHHHHH
Confidence 445789999999999999999999943447999999974 455555 34555544321 11011223455555555555
Q ss_pred ccccc---cccc--cEEEccc-ccccchhhhhh----cccccccchhccccCHHHHhhcCCCC-----------cceeEe
Q psy16975 324 AGLLS---ENCG--VQVINGY-NLAKSEKQCAE----NHYLKPVLPVYKRMSEEELAEIGPGD-----------WKYGIY 382 (728)
Q Consensus 324 ~~l~~---~~~G--v~~~~G~-~~a~~~~~~~~----~~~~~~~g~~~~~L~~~el~~~~P~~-----------~~~G~~ 382 (728)
.+++. .... .....|. .++.++++.+. .+.+++.+.++++++++|+++++|.- ...|++
T Consensus 121 ~~~~~~L~~~~~~~~~~~~G~l~va~~e~e~~~L~~~~~~~~~~~~~~e~ld~~el~e~eP~v~~~~~~~~~~e~~~Al~ 200 (497)
T PTZ00383 121 RNYLTKLPPSERDSIIFKMQKMVLGVGEKECEFLEKRYPVFKELFPSMQLLDKKEIHRVEPRVVLKNNHTLREEPLAALY 200 (497)
T ss_pred HHHHHHhcccccccceeeCCEEEEEECHHHHHHHHHHHHHHHccCCCeEEECHHHHHHhCcccccCccccccccceEEEE
Confidence 55442 1111 1134564 44555555322 23344567789999999999999951 235677
Q ss_pred EE-e-eeecCccceecccccCCCCC----CCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHHHHhhhccccc
Q psy16975 383 MS-T-LVIPNRIFLPWCMQKDGPSN----LGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYA 455 (728)
Q Consensus 383 ~~-~-g~idp~~ll~~L~~~a~~~~----~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v~t~~~~g~ad 455 (728)
.+ + +.+||..++.+|++.++ + +|. .++|+++|+ ++++... +.++.|.+. .+...
T Consensus 201 ~p~~g~~Vd~~~L~~al~~~a~--~~~~~~G~-----~v~i~~~t~V~~I~~~~----------~~~~~V~T~--~G~i~ 261 (497)
T PTZ00383 201 VPNELTTVDYQKLSESFVKHAR--RDALVPGK-----KISINLNTEVLNIERSN----------DSLYKIHTN--RGEIR 261 (497)
T ss_pred eCCCCEEECHHHHHHHHHHHHH--hhhhhcCC-----CEEEEeCCEEEEEEecC----------CCeEEEEEC--CCEEE
Confidence 77 4 68999999999999998 7 662 267888888 4444321 222234444 34444
Q ss_pred cccccccccEEEcccccccchhhhhhccc--ccccchhccccC
Q psy16975 456 GLLSENCGVQVINGYNLAKSEKQCAENHY--LKPVLPVYKRMS 496 (728)
Q Consensus 456 a~~VVnAa~~viaG~~~~~S~~L~~~~gi--~lpv~PvRGQl~ 496 (728)
++.||+|+ |. |+..|+...++ ..++.|++|+.+
T Consensus 262 A~~VVvaA-----G~---~S~~La~~~Gi~~~~~i~Pv~G~~~ 296 (497)
T PTZ00383 262 ARFVVVSA-----CG---YSLLFAQKMGYGLEYSCLPVAGSFY 296 (497)
T ss_pred eCEEEECc-----Ch---hHHHHHHHhCCCCCCCEEecCceEE
Confidence 44999999 99 99999887664 567899999854
No 26
>KOG2852|consensus
Probab=99.73 E-value=2e-18 Score=177.27 Aligned_cols=341 Identities=17% Similarity=0.167 Sum_probs=203.3
Q ss_pred ccCcceEEEeecceechhhHHHhhhhC---C-CCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRF---P-NCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDH 322 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~---~-G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~ 322 (728)
+....+|+||||||+|++|||+|+++. + .+.|+|+|+..++.+||+.++|++.. ++.+ .....++..+++.
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~---wc~~--s~~~~La~lsfkL 81 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAK---WCQP--SIIQPLATLSFKL 81 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHh---hhCC--cccchhhHHHHHH
Confidence 456679999999999999999999941 1 26899999999999999999999985 3333 1244556666666
Q ss_pred cccccccccccE-----EEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccceecc
Q psy16975 323 YAGLLSENCGVQ-----VINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWC 397 (728)
Q Consensus 323 ~~~l~~~~~Gv~-----~~~G~~~a~~~~~~~~~~~~~~~g~~~~~L~~~el~~~~P~~~~~G~~~~~g~idp~~ll~~L 397 (728)
++++.++.-|+. ..+.+.+-.+-+. ..-...+...+|+.++-... ....|---.++++||+.||+.+
T Consensus 82 h~~LsdeydGvnnwgYRaltTws~ka~~en----~~p~k~pegldWi~~e~v~~----~ssiG~t~ttaqvhP~lFc~~i 153 (380)
T KOG2852|consen 82 HEELSDEYDGVNNWGYRALTTWSCKADWEN----TNPAKVPEGLDWIQRERVQK----CSSIGSTNTTAQVHPYLFCHFI 153 (380)
T ss_pred HHHHHHhhcCcccccceeeeEEEEEeeccc----CCcccCCcchhhhhhHHhhh----heeccCCCccceeCHHHHHHHH
Confidence 666654222322 1122222111000 00112333456666654433 1112332345999999999999
Q ss_pred cccCCCCCCCCCCceeeEEEEEeeCceeEEEeccccccccCCcchhHHH--Hhhh-ccccccccccccccEEEccccccc
Q psy16975 398 MQKDGPSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQ--RAMQ-HDHYAGLLSENCGVQVINGYNLAK 474 (728)
Q Consensus 398 ~~~a~~~~~G~~~~~l~v~I~e~t~~~V~~~~g~~v~~l~~~~~v~~v~--t~~~-~g~ada~~VVnAa~~viaG~~~~~ 474 (728)
+..++ +.| +|++.. |++.+--.+..++.++- ++.. ...+|..++|+++ |. |
T Consensus 154 ~sea~--k~~------~V~lv~----------Gkv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsa-----GP---W 207 (380)
T KOG2852|consen 154 LSEAE--KRG------GVKLVF----------GKVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSA-----GP---W 207 (380)
T ss_pred HHHHH--hhc------CeEEEE----------eeeEEeecccccccccchhhhcCceEEeeeeEEEEec-----CC---C
Confidence 99998 666 244443 44332101122222221 1101 1134444888888 99 9
Q ss_pred chhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhh----ceeeeecCCc
Q psy16975 475 SEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLA----GAYIIPSYGG 550 (728)
Q Consensus 475 S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~----~~YiiP~~dG 550 (728)
+..|++... +.-.|-+.++.+....+-+++ ..|.++. ..++ ..-+++|.++
T Consensus 208 Tskllp~~r----IsglrihsI~l~~~e~~v~~~---avf~~l~------------------~~~g~ei~~pe~y~rkd~ 262 (380)
T KOG2852|consen 208 TSKLLPFTR----ISGLRIHSITLSPGEKPVGPS---AVFCELN------------------TMDGLEICKPEEYARKDR 262 (380)
T ss_pred chhhccccc----cceeeeeeEEecCCCCCCCCc---eEEEEEE------------------eCCCccccCcceeecCCc
Confidence 999876532 333333322211111000000 0000000 0011 2235667775
Q ss_pred eE-EeccccccC-----cccccccccchhhhhhcccccccccccccceeeeeecccccceeeeeeccccccceeeeeeee
Q psy16975 551 LV-TLGGTQDYG-----NARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHHVRVERDLTGAAQYLTWYPVF 624 (728)
Q Consensus 551 ~v-viGgt~e~~-----~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tpd~Rie~e~~~~~~~~~~l~~~ 624 (728)
.+ ++|.+.+.. ..+..++++..+.|.+-+..+.+.+.+..++...+.+-|.+.+. +.|++
T Consensus 263 Evyicg~~~~e~~lPedsd~v~~npeki~~Lk~~a~~v~s~l~ks~v~~~qacfLP~sn~t--------------g~PvI 328 (380)
T KOG2852|consen 263 EVYICGETDKEHLLPEDSDDVFVNPEKIIELKEMADLVSSELTKSNVLDAQACFLPTSNIT--------------GIPVI 328 (380)
T ss_pred eEEEecCCCccccCCcccccceeCHHHHHHHHHHHHHhhhhhccchhhhhhhccccccCCC--------------CCceE
Confidence 54 677776552 34567888889999999999999999988999999998888761 11111
Q ss_pred EEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccCcceEEeecCceEEEEeecccCccccccC
Q psy16975 625 KVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSA 704 (728)
Q Consensus 625 ~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v~h~yGhgg~G~t~s 704 (728)
. -+.+ .|+-+.||+=.|.+.+
T Consensus 329 ----------------------------------------g----------------et~s---g~yVaagHscWGItna 349 (380)
T KOG2852|consen 329 ----------------------------------------G----------------ETKS---GVYVAAGHSCWGITNA 349 (380)
T ss_pred ----------------------------------------e----------------ecCC---ceEEeecccccceecC
Confidence 0 0111 3788999999999999
Q ss_pred CCCceeeeeeeecccccccC
Q psy16975 705 PGSARCAVSVFEQSHKASYN 724 (728)
Q Consensus 705 ~g~A~~~~~l~~~~~~~~~~ 724 (728)
|+++.++|+|+.+-.+-|-|
T Consensus 350 PaTG~~mAEllldgeaTSan 369 (380)
T KOG2852|consen 350 PATGKCMAELLLDGEATSAN 369 (380)
T ss_pred cchhHHHHHHHhccceeeee
Confidence 99999999999876655544
No 27
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.72 E-value=2.3e-18 Score=196.16 Aligned_cols=222 Identities=14% Similarity=0.022 Sum_probs=139.6
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCC--CccccccCCCC--CCCCCch-hhhh---------h
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSD--GAAGLFEPSPN--FMGPDLE-TTKE---------W 315 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~--~agGii~p~~~--l~~~~~~-~~~~---------~ 315 (728)
+||+||||||+|+|+||+|++..+|.+|+|+||+. ++.++|+ +|+|.++.... ...+... .... .
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~~~~naG~~hag~~e~~y~~~~~~~~~~l~~a~~~~~~ 80 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSNPWNNAGTGHSALCELNYTPEMADGSIDIAKAVGINEQ 80 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCCCCCcccccccchhhccCCCccCCCchhHHHHHHHHHH
Confidence 59999999999999999999955699999999954 7778888 46555444320 0111110 1111 2
Q ss_pred hhhccccccccccc-----ccccEEEcccc-cccchhhhhh----cccccccch--hccc-cCHHHHhhcCCC-C-----
Q psy16975 316 IRYSYDHYAGLLSE-----NCGVQVINGYN-LAKSEKQCAE----NHYLKPVLP--VYKR-MSEEELAEIGPG-D----- 376 (728)
Q Consensus 316 ~~~s~~~~~~l~~~-----~~Gv~~~~G~~-~a~~~~~~~~----~~~~~~~g~--~~~~-L~~~el~~~~P~-~----- 376 (728)
...+.++|..+.+. ..++..++|.+ ++.++++.+. ...++..+. +.++ ++++|+++++|. .
T Consensus 81 ~~~s~~~~~~l~~~g~~~~~~~~~~~~G~L~va~~e~e~~~L~~~~~~~~~~g~~~~~~~~l~~~el~~~eP~l~~~r~~ 160 (483)
T TIGR01320 81 FQVSRQFWAHLVEEGILTDPKSFINPVPHVSFVHGSDGVAYLKKRYEALKGHPLFEGMEFSEDPATFAEWLPLMAAGRDF 160 (483)
T ss_pred HHHHHHHHHHHHHcCCCCChhhhccCCCeEEEEEChHHHHHHHHHHHHHhcCCCccCceEeCCHHHHHHhCCCcccCCCC
Confidence 23455555444321 01122236654 4555555432 222344443 4564 799999999996 1
Q ss_pred --cceeEeEE-eeeecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEec-cccccccCCcchhHHHHhhhc
Q psy16975 377 --WKYGIYMS-TLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRG-PLHEKVSSGPRTCAMQRAMQH 451 (728)
Q Consensus 377 --~~~G~~~~-~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g-~~v~~l~~~~~v~~v~t~~~~ 451 (728)
...|++++ ++++||..++.+|++.++ ++| ++|+++++ ++++...+ .+...+. ...+. ..
T Consensus 161 ~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~--~~G-------v~i~~~t~V~~i~~~~~~~v~v~~~------~~~~g-~~ 224 (483)
T TIGR01320 161 SEPVAANWAAEGTDVDFGALTKQLLGYLV--QNG-------TTIRFGHEVRNLKRQSDGSWTVTVK------NTRTG-GK 224 (483)
T ss_pred CCceEEEEeCCCEEECHHHHHHHHHHHHH--hCC-------CEEEeCCEEEEEEEcCCCeEEEEEe------eccCC-ce
Confidence 24567777 589999999999999998 888 99999998 45543221 1211010 00000 01
Q ss_pred cccccccccccccEEEcccccccchhhhhhcccc----cccchhccccC
Q psy16975 452 DHYAGLLSENCGVQVINGYNLAKSEKQCAENHYL----KPVLPVYKRMS 496 (728)
Q Consensus 452 g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~----lpv~PvRGQl~ 496 (728)
....++.||||+ |+ |+..|+...++. .++.|++||++
T Consensus 225 ~~i~A~~VV~AA-----G~---~s~~La~~~Gi~~~~~~~i~P~~Gq~l 265 (483)
T TIGR01320 225 RTLNTRFVFVGA-----GG---GALPLLQKSGIPEVKGFAGFPVSGLFL 265 (483)
T ss_pred EEEECCEEEECC-----Cc---chHHHHHHcCCCcCCCCceeeeeEEEE
Confidence 123444999999 99 999998777643 47899999965
No 28
>KOG2665|consensus
Probab=99.69 E-value=3.4e-18 Score=177.24 Aligned_cols=357 Identities=15% Similarity=0.168 Sum_probs=222.6
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccccccCCCCCCCCCchhhhhhhhhccccccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAG 325 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~~ 325 (728)
....+|+|||||||+||++|.+|.-++++.+|.|+|++. .+-..|++|.|.++...|. . +....++++.+..+.+.+
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY-~-P~SLKAklCV~G~~LlY~ 122 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYY-K-PGSLKAKLCVEGRELLYE 122 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeee-C-CcccchhhhhccHHHHHH
Confidence 467899999999999999999999877899999999975 4556788888887775432 2 245778899888888877
Q ss_pred ccccccccEE-Eccc-ccccchhhhhhcc-----cccccchhccccCHHHHhhcCCC-CcceeEeEE-eeeecCccceec
Q psy16975 326 LLSENCGVQV-INGY-NLAKSEKQCAENH-----YLKPVLPVYKRMSEEELAEIGPG-DWKYGIYMS-TLVIPNRIFLPW 396 (728)
Q Consensus 326 l~~~~~Gv~~-~~G~-~~a~~~~~~~~~~-----~~~~~g~~~~~L~~~el~~~~P~-~~~~G~~~~-~g~idp~~ll~~ 396 (728)
... +..+.. +.|. +++.++++....+ ...+...+.++|+..|+.+++|. .-..++..| +|.+|-..++..
T Consensus 123 yc~-e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls 201 (453)
T KOG2665|consen 123 YCD-EKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLS 201 (453)
T ss_pred Hhh-hcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHH
Confidence 774 667775 5675 4455555533222 22345678999999999999996 223356666 699999999999
Q ss_pred ccccCCCCCCCCCCceeeEEEEEeeC-ceeEEE-ecccccccc-CCcchhHHHHhhhccccccccccccccEEEcccccc
Q psy16975 397 CMQKDGPSNLGERPSTLSVELYHYNR-DSLTVV-RGPLHEKVS-SGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLA 473 (728)
Q Consensus 397 L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~-~g~~v~~l~-~~~~v~~v~t~~~~g~ada~~VVnAa~~viaG~~~~ 473 (728)
+.+.++ ..| -+|++|.+ .++.-- ++++...+. .+++ ..+.+++.||-|+ |+
T Consensus 202 ~~edF~--~~g-------g~i~~n~~l~g~~~n~~~~~~Ypivv~ngk---------~ee~r~~~~vtc~-----gl--- 255 (453)
T KOG2665|consen 202 FGEDFD--FMG-------GRIYTNFRLQGIAQNKEATFSYPIVVLNGK---------GEEKRTKNVVTCA-----GL--- 255 (453)
T ss_pred HHHHHH--Hhc-------ccccccceeccchhccCCCCCCceEEecCc---------cceeEEeEEEEec-----cc---
Confidence 999998 877 77787776 222211 011110000 1111 1134445899999 99
Q ss_pred cchhhhhhcc--cccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhhceeeeecCCce
Q psy16975 474 KSEKQCAENH--YLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYIIPSYGGL 551 (728)
Q Consensus 474 ~S~~L~~~~g--i~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~~~YiiP~~dG~ 551 (728)
.+..+....+ ....+.|.||..+.....+. ....|. +. .++.|. |+ --+..+-|+.+|.
T Consensus 256 ~sdr~aa~sgc~~dPriVpfrG~ylll~~ek~---h~vk~n-----iy--Pvpd~R-----Fp----flGvhftPrm~g~ 316 (453)
T KOG2665|consen 256 QSDRCAALSGCELDPRIVPFRGEYLLLKPEKL---HLVKGN-----IY--PVPDPR-----FP----FLGVHFTPRMDGS 316 (453)
T ss_pred cHhHHHHHhCCCCCCeeeeccchhhhcChHHh---ccccCc-----ee--eCCCCC-----Cc----cccccccCcCCCc
Confidence 5554443322 12357888887542221111 000011 11 011111 11 0234566777887
Q ss_pred EEecccccc-------------------------------Ccccccccccchhhh----hhcccccccccccccceeeee
Q psy16975 552 VTLGGTQDY-------------------------------GNARLGVDRFDSRAI----LNRTAAVRPEILAAPVEKVWV 596 (728)
Q Consensus 552 vviGgt~e~-------------------------------~~~d~~~~~~~~~~l----l~~~~~l~P~L~~~~I~~~wa 596 (728)
+++|-..-. ..++..+++...+.. ...+.+++|+|++.+|.+..+
T Consensus 317 iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg~~k~~~k~f~ygv~e~~k~~f~~aqvk~lqkyiPdlk~~di~rGpa 396 (453)
T KOG2665|consen 317 IWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSGDTKLASKKFDYGVNEMYKEKFIAAQVKELQKYIPDLKDSDIERGPA 396 (453)
T ss_pred eecCCCceEEEEEEeeccccccccchhhheecCchHHHHHhhcCcccchHhhhhhhhhhhHHHHHhCccccccccccCcc
Confidence 777743110 112333333333333 378889999999999999999
Q ss_pred ecccccceeeeeeccccccceeeeeeeeEEeceeEEEEEeeecccCccchhhhhhhhhcccccccceeeccccccccccC
Q psy16975 597 GLRPYRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLCN 676 (728)
Q Consensus 597 GlRP~tpd~Rie~e~~~~~~~~~~l~~~~~~G~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~nc~g~~~~~~~~ 676 (728)
|+|.-.-|- +. ++ -.|+||+-- -| .|
T Consensus 397 GvRaqald~---------~g--------------------------------------nl--v~DFVfd~g-~g--~~-- 422 (453)
T KOG2665|consen 397 GVRAQALDG---------DG--------------------------------------NL--VDDFVFDGG-EG--HL-- 422 (453)
T ss_pred cccchhccC---------CC--------------------------------------CC--chheEEecC-cc--cc--
Confidence 998543330 00 00 135666532 12 11
Q ss_pred cceEEeecCceEEEEeecccCccccccCCCCceeeeeee
Q psy16975 677 DMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVF 715 (728)
Q Consensus 677 d~~~~~~~g~~~~v~h~yGhgg~G~t~s~g~A~~~~~l~ 715 (728)
.-+++|..+.-+.|.|+|.++|+.+|+=+
T Consensus 423 ----------~p~llh~rnapSPgaTSSlAIa~mIa~k~ 451 (453)
T KOG2665|consen 423 ----------VPRLLHVRNAPSPGATSSLAIAKMIADKF 451 (453)
T ss_pred ----------ccceEEecCCCCccchhhHHHHHHHHHHh
Confidence 12488999999999999999998877543
No 29
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.64 E-value=9.9e-17 Score=182.39 Aligned_cols=222 Identities=11% Similarity=0.023 Sum_probs=143.2
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeec-ccccccCCCC-------ccccccCCCCCCCCCchhhhhhh----
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD-KFNMDTTSDG-------AAGLFEPSPNFMGPDLETTKEWI---- 316 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk-~~~g~gAS~~-------agGii~p~~~l~~~~~~~~~~~~---- 316 (728)
..+||+||||||+|+|+||+|++..++++|+|+|| +.++..+|++ ++|++...+. .+...-...+.
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~~~nNagt~hag~~e~nY~--~~~~~g~~~~~ka~~ 82 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNEWNNAGTGHAALCELNYT--VQQPDGSIDIEKAKE 82 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCCCccccCcceeeehhhccC--CcccCCcccHHHHHH
Confidence 45799999999999999999999556999999999 8888899987 7787776431 11100011122
Q ss_pred -----hhccccccccccc-c----cccEEEccc-ccccchhhhhh----cccccccch--hcccc-CHHHHhhcCCC---
Q psy16975 317 -----RYSYDHYAGLLSE-N----CGVQVINGY-NLAKSEKQCAE----NHYLKPVLP--VYKRM-SEEELAEIGPG--- 375 (728)
Q Consensus 317 -----~~s~~~~~~l~~~-~----~Gv~~~~G~-~~a~~~~~~~~----~~~~~~~g~--~~~~L-~~~el~~~~P~--- 375 (728)
..+.++|..+.+. . .++-...++ .++..+++.+. ...+++.+. +++.+ |++|+.+++|.
T Consensus 83 i~~~~~~s~~f~~~~~~~~~~~~~~~~i~~~~~m~~~~~~~~~~~L~~r~~~~~~~~~f~~~~~~~d~~el~~~~P~l~~ 162 (497)
T PRK13339 83 INEQFEISKQFWGHLVKSGTIGNPREFINPLPHISFVRGKNNVKFLKKRYEALKQHPMFDNIEYTEDIEVMAKWMPLMMP 162 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCChHhhcccCCeEEEEEChHHHHHHHHHHHHhhccCCCCCcEEecCHHHHHHhCCcccC
Confidence 4555666554320 1 111123454 34434444322 233555555 78999 89999999996
Q ss_pred C-----cceeEeEE-eeeecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEE-eccccccccCCcchhHHHH
Q psy16975 376 D-----WKYGIYMS-TLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVV-RGPLHEKVSSGPRTCAMQR 447 (728)
Q Consensus 376 ~-----~~~G~~~~-~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~-~g~~v~~l~~~~~v~~v~t 447 (728)
+ ...|++++ ++.+|+..++++|++.+.. ..| ++|+++++ ++++.. ++.|...+. .+
T Consensus 163 ~r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~-~~G-------v~i~~~~~V~~I~~~~d~~w~v~v~--------~t 226 (497)
T PRK13339 163 GREANEIMAASKIDEGTDVNFGALTRKLAKHLES-HPN-------AQVKYNHEVVDLERLSDGGWEVTVK--------DR 226 (497)
T ss_pred CCCCCcceeEEECCCceecCHHHHHHHHHHHHHh-CCC-------cEEEeCCEEEEEEECCCCCEEEEEE--------ec
Confidence 1 23466667 4899999999999999850 346 89999888 445433 222221110 01
Q ss_pred hhhc-cccccccccccccEEEcccccccchhhhhhcccc----cccchhccccC
Q psy16975 448 AMQH-DHYAGLLSENCGVQVINGYNLAKSEKQCAENHYL----KPVLPVYKRMS 496 (728)
Q Consensus 448 ~~~~-g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~----lpv~PvRGQl~ 496 (728)
..+. ....++.||||+ |+ |+..|+...++. .++.|+|||++
T Consensus 227 ~~g~~~~i~Ad~VV~AA-----Ga---wS~~La~~~Gi~~~~~~~i~PvkGq~l 272 (497)
T PRK13339 227 NTGEKREQVADYVFIGA-----GG---GAIPLLQKSGIPESKHLGGFPISGQFL 272 (497)
T ss_pred CCCceEEEEcCEEEECC-----Cc---chHHHHHHcCCCccCCCceEeeeEEEE
Confidence 1000 023334999999 99 999998887653 47899999964
No 30
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.64 E-value=9.6e-17 Score=183.27 Aligned_cols=225 Identities=14% Similarity=0.024 Sum_probs=139.5
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCC--CccccccCCC---CCCCC--Cchhhhhhh---
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSD--GAAGLFEPSP---NFMGP--DLETTKEWI--- 316 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~--~agGii~p~~---~l~~~--~~~~~~~~~--- 316 (728)
+..+||+||||||+|+|+||+|++..+|++|+||||+. ++.++|+ +|+|..+... +...+ +.....+.+
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~~~~NaG~ghag~~e~~y~~~~~~g~~~~~~a~~~ 82 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEKADGSIDISKAVKI 82 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCCCcCccccccccchhhcCCCCCCCCchhHHHHHHH
Confidence 35689999999999999999999855689999999975 4666666 5666554421 11110 011111221
Q ss_pred ----hhccccccccccccccc--E-----EEcccc-cccchhhhhh----cccccccch--hccc-cCHHHHhhcCCCC-
Q psy16975 317 ----RYSYDHYAGLLSENCGV--Q-----VINGYN-LAKSEKQCAE----NHYLKPVLP--VYKR-MSEEELAEIGPGD- 376 (728)
Q Consensus 317 ----~~s~~~~~~l~~~~~Gv--~-----~~~G~~-~a~~~~~~~~----~~~~~~~g~--~~~~-L~~~el~~~~P~~- 376 (728)
..+.++|..+.+ .|+ + .+.|++ ++.++++.+. ...++..+. .+++ ++++|+++.+|.-
T Consensus 83 ~~~~~~s~~~~~~l~~--~g~~~~~~~~~~~~G~l~la~~e~e~~~l~~~~~~~~~~g~~~~~~~~~d~~el~e~eP~l~ 160 (494)
T PRK05257 83 NEQFQISRQFWAYLVE--KGVLPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALKANPLFAGMEFSEDPAQIKEWAPLMM 160 (494)
T ss_pred HHHHHHHHHHHHHHHH--cCCCCCcccccccCCeEEEEECHHHHHHHHHHHHHHHhCCCCCCCEEeCCHHHHHHhCcccc
Confidence 344455544432 222 1 255654 4555555432 233444443 4566 4999999999851
Q ss_pred -------cceeEeEE-eeeecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEecc-ccccccCCcchhHHH
Q psy16975 377 -------WKYGIYMS-TLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGP-LHEKVSSGPRTCAMQ 446 (728)
Q Consensus 377 -------~~~G~~~~-~g~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~-~v~~l~~~~~v~~v~ 446 (728)
...|++++ ++.+|+..++.+|.+.++ +.| +++|+++|+ ++++...+. +...+.. ..
T Consensus 161 ~~r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~--~~G------gv~i~~~teV~~I~~~~dg~~~v~~~~------~~ 226 (494)
T PRK05257 161 EGRDPSQKVAATRIEIGTDVNFGALTRQLVGYLQ--KQG------NFELQLGHEVRDIKRNDDGSWTVTVKD------LK 226 (494)
T ss_pred cCCCCCcceeEEEcCCceEECHHHHHHHHHHHHH--hCC------CeEEEeCCEEEEEEECCCCCEEEEEEE------cC
Confidence 34567777 589999999999999998 654 279999988 455432221 2100100 00
Q ss_pred HhhhccccccccccccccEEEcccccccchhhhhhcccc----cccchhccccCH
Q psy16975 447 RAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYL----KPVLPVYKRMSE 497 (728)
Q Consensus 447 t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi~----lpv~PvRGQl~~ 497 (728)
+. ......++.||+|+ |. |+..|+...++. .++.|++||++.
T Consensus 227 ~G-~~~~i~A~~VVvaA-----Gg---~s~~L~~~~Gi~~~~~~~i~PvrGq~l~ 272 (494)
T PRK05257 227 TG-EKRTVRAKFVFIGA-----GG---GALPLLQKSGIPEAKGYGGFPVSGQFLV 272 (494)
T ss_pred CC-ceEEEEcCEEEECC-----Cc---chHHHHHHcCCCccCCCCeeeeeEEEEE
Confidence 00 00123444999999 99 999998877643 368999999653
No 31
>KOG3923|consensus
Probab=99.44 E-value=5e-14 Score=146.03 Aligned_cols=54 Identities=37% Similarity=0.780 Sum_probs=50.3
Q ss_pred eecccCccchhhhhhhhhccc-ccccceeeccccccccccCcceEEeecCceEEE
Q psy16975 637 RFKAAGGKVIEKYISSFSELG-SEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRI 690 (728)
Q Consensus 637 ~~~~~g~~~~~~~~~~~~~~~-~~~~~~~nc~g~~~~~~~~d~~~~~~~g~~~~v 690 (728)
.|..+||+|++++|+||+|+. .+||||||||||||++|+.|.+|||+|||+++|
T Consensus 160 ~l~e~Gvef~~r~v~~l~E~~~~~~DVivNCtGL~a~~L~gDd~~yPiRGqVl~V 214 (342)
T KOG3923|consen 160 RLTENGVEFVQRRVESLEEVARPEYDVIVNCTGLGAGKLAGDDDLYPIRGQVLKV 214 (342)
T ss_pred HHHhcCcEEEEeeeccHHHhccCCCcEEEECCccccccccCCcceeeccceEEEe
Confidence 455689999999999999999 789999999999999999999999999999875
No 32
>KOG0042|consensus
Probab=99.43 E-value=6.1e-15 Score=162.46 Aligned_cols=303 Identities=15% Similarity=0.074 Sum_probs=177.4
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCCCCCCCCCchhhhhhhhhcccccc----
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYA---- 324 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~~~l~~~~~~~~~~~~~~s~~~~~---- 324 (728)
.++||+|||||.+|.-+|+-.+- +|++|.++|++..++|||+.+.-+++-..... .....++..+-|+..+
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~T--RGLktaLVE~~DF~SGTSSkSTKLiHGGVRYL---ekAi~~lD~~qyrlV~eaL~ 140 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAAT--RGLKTALVEAGDFASGTSSKSTKLIHGGVRYL---EKAISNLDYEQYRLVKEALN 140 (680)
T ss_pred CcccEEEECCCccCcceeehhhc--ccceeEEEecccccCCccccchhhhcccHHHH---HHHHHhcCHHHHHHHHHHHH
Confidence 45999999999999999999999 99999999999999999998877666532100 0111222222222222
Q ss_pred ---cccc--cc----cccEEEcccccccchh---hhhhccccc--ccchhccccCHHHHhhcCCC----CcceeEeEEee
Q psy16975 325 ---GLLS--EN----CGVQVINGYNLAKSEK---QCAENHYLK--PVLPVYKRMSEEELAEIGPG----DWKYGIYMSTL 386 (728)
Q Consensus 325 ---~l~~--~~----~Gv~~~~G~~~a~~~~---~~~~~~~~~--~~g~~~~~L~~~el~~~~P~----~~~~G~~~~~g 386 (728)
++++ +. .-+.+ +-|.++.-+- ......+.. +.......++.++.-+++|. ...+++.|-+|
T Consensus 141 ER~~lle~APhLs~~lPIml-Pvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~VYyDG 219 (680)
T KOG0042|consen 141 ERANLLEIAPHLSQPLPIML-PVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAMVYYDG 219 (680)
T ss_pred HHHHHhhcCccccCCcceee-ehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCceeEEEEecC
Confidence 1221 11 01110 1110000000 000111111 12233567899999999997 35667777789
Q ss_pred eecCccceecccccCCCCCCCCCCceeeEEEEEeeC-ceeEEEeccccccccCCcchhHH-----HHhhhcccccccccc
Q psy16975 387 VIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNR-DSLTVVRGPLHEKVSSGPRTCAM-----QRAMQHDHYAGLLSE 460 (728)
Q Consensus 387 ~idp~~ll~~L~~~a~~~~~G~~~~~l~v~I~e~t~-~~V~~~~g~~v~~l~~~~~v~~v-----~t~~~~g~ada~~VV 460 (728)
+.|-.+++..++--|. ++| +.+..|.+ .++... ..+++.+. .|. ..-...++.||
T Consensus 220 Q~nDaRmnl~vAlTA~--r~G-------A~v~Nh~ev~~Llkd---------~~~kv~Ga~~rD~iTG-~e~~I~Ak~VV 280 (680)
T KOG0042|consen 220 QHNDARMNLAVALTAA--RNG-------ATVLNHVEVVSLLKD---------KDGKVIGARARDHITG-KEYEIRAKVVV 280 (680)
T ss_pred CCchHHHHHHHHHHHH--hcc-------hhhhhHHHHHHHhhC---------CCCceeeeEEEEeecC-cEEEEEEEEEE
Confidence 9999999998888877 888 77777776 222211 11222121 111 01134555999
Q ss_pred ccccEEEcccccccchhhhhhcccccccchhccccCHHHHhhcCCCCcceeEeEEeeeecCccccchhcccchHHHHHhh
Q psy16975 461 NCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNFASLVRLA 540 (728)
Q Consensus 461 nAa~~viaG~~~~~S~~L~~~~gi~lpv~PvRGQl~~~el~~~~p~~w~~G~~~~Tlvve~~~~~P~l~~~~~~~~i~~~ 540 (728)
||| |.+.|..+++- +.....-+.|.-|.- +++ |.-+.|.-..-.-|..-+..
T Consensus 281 NAT-----GpfsDsIr~Md-d~~~~~i~~pSsGvH---------------------IVl-P~yY~P~~mGlldP~TsDgR 332 (680)
T KOG0042|consen 281 NAT-----GPFSDSIRKMD-DEDAKPICVPSSGVH---------------------IVL-PGYYCPENMGLLDPKTSDGR 332 (680)
T ss_pred eCC-----CCccHHHHhhc-ccccCceeccCCcee---------------------EEc-ccccCCcccccccCCCCCCc
Confidence 999 99555333332 222122244544431 222 12222321110000011133
Q ss_pred ceeeeecCCceEEeccccccCc--ccccccccchhhhhhccccccc---ccccccceeeeeeccccccee
Q psy16975 541 GAYIIPSYGGLVTLGGTQDYGN--ARLGVDRFDSRAILNRTAAVRP---EILAAPVEKVWVGLRPYRHHV 605 (728)
Q Consensus 541 ~~YiiP~~dG~vviGgt~e~~~--~d~~~~~~~~~~ll~~~~~l~P---~L~~~~I~~~waGlRP~tpd~ 605 (728)
-.|+.|..+ ..+.|.|..+.. .++.|++++++.||+.+..++- ++...+|+..|+|+||...|+
T Consensus 333 ViFflPWqg-~TIaGTTD~pt~v~~~P~PtE~dIqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP 401 (680)
T KOG0042|consen 333 VIFFLPWQG-KTIAGTTDIPTSVTHSPTPTEDDIQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDP 401 (680)
T ss_pred EEEEeccCC-ceeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCcccchhhhHHHhhCCcccccCC
Confidence 467777764 488899988843 4678889999999999988753 467788999999999999885
No 33
>KOG1116|consensus
Probab=99.32 E-value=1.6e-12 Score=145.46 Aligned_cols=71 Identities=34% Similarity=0.568 Sum_probs=66.5
Q ss_pred ccchhHhHHHHHhhcCCCccc--ccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeecccccccccc
Q psy16975 5 HHFGVWLIEEFLIGLASGSHI--KVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVT 75 (728)
Q Consensus 5 ~~~~r~~~l~~~~~~~~g~h~--~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~~ 75 (728)
..+||.+++.+|++|++|+|+ .+|+|.|++|+|||+||.++.||++||||+++++|+|+||||++++++..
T Consensus 494 ~~~~r~~ll~~llald~gsh~~~~~p~v~~~~vra~r~epv~~~~~~~vDGE~~~~ep~q~~v~p~~i~~~s~ 566 (579)
T KOG1116|consen 494 AGGSRTQLLRLLLALDKGSHLHVECPFVKYVKVRAFRLEPVTPSGYFAVDGELVPLEPLQVQVLPGLILTLSG 566 (579)
T ss_pred cCCcHHHHHHHHHhhcccccccccCCceeEEEeEEEEEEEecCCceEEecccEeeccceeEEecccceeEEec
Confidence 347999999999999999997 88999999999999999999999999999999999999999999955555
No 34
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=98.62 E-value=3.6e-08 Score=112.62 Aligned_cols=70 Identities=31% Similarity=0.478 Sum_probs=63.8
Q ss_pred cchhHhHHHHHhhcCCCcccccCceeeEEcceeEEeecC------CCcEEEEcceEe---------------eeccccee
Q psy16975 6 HFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHS------SGSYIVVDGEVL---------------DYGPIQAE 64 (728)
Q Consensus 6 ~~~r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~------~~g~i~vDGE~~---------------~~~~~q~e 64 (728)
+.||+++|.+|..+.+|+|+..|+|+|+|+++|+|+|.. +.+++.||||.+ .|+|+|++
T Consensus 390 ~~s~~~lL~~l~~~~~G~h~~~~~V~~~k~k~~~I~~~~~~~~~~~~~~i~iDGE~~~~~p~~i~v~~~al~~~~~~~~~ 469 (481)
T PLN02958 390 DCPKLALLALMTKLSDGTHVKSPYVMYLKVKAFVLEPGPRTDDPTKGGIIDSDGEVLARGNGSYKCDQKALMSYDKLQIS 469 (481)
T ss_pred CCCHHHHHHHHHHHhCCCccCCCceEEEEEEEEEEEECCcccCcCcCCeEEECCcccCCCCceeeeccccccccCceEEE
Confidence 579999999999999999999999999999999999952 458999999988 57899999
Q ss_pred eccccccccccc
Q psy16975 65 IFPGLIERTVTT 76 (728)
Q Consensus 65 v~~~l~~~~~~~ 76 (728)
|||||+ +++||
T Consensus 470 ~~~~~~-~~~~~ 480 (481)
T PLN02958 470 VDQGLA-TLFSP 480 (481)
T ss_pred EcCCce-EeecC
Confidence 999999 88886
No 35
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.48 E-value=1.8e-07 Score=98.70 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=41.4
Q ss_pred hceeeeecCCceEEeccccccCcccccccccchhhhhhcccccccccccccceeeeeecccccc
Q psy16975 540 AGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRH 603 (728)
Q Consensus 540 ~~~YiiP~~dG~vviGgt~e~~~~d~~~~~~~~~~ll~~~~~l~P~L~~~~I~~~waGlRP~tp 603 (728)
...|++|..++++.+|-+..... +....+..++...+.+|.+.+.++.+.+.+..|+..
T Consensus 195 ~~~~~~P~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 253 (295)
T TIGR02032 195 GYGWVFPKGDGTANVGVGSRSAE-----EGEDLKKYLKDFLARRPELKDAETVEVIGAPIPIGR 253 (295)
T ss_pred ceEEEEeCCCCeEEEeeeeccCC-----CCCCHHHHHHHHHHhCcccccCcEEeeeceeeccCC
Confidence 45789999888887775543322 344556667777777888888888887887777753
No 36
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.37 E-value=4.8e-08 Score=111.31 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=41.7
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc--cccCCCCcccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN--MDTTSDGAAGL 297 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~--g~gAS~~agGi 297 (728)
|+.++||||||+|++|+++|++|++ .|.+|+||||... ..++|..++|+
T Consensus 1 ~~~~~DVvVVG~G~aGl~AA~~aa~--~G~~V~vlEk~~~~~~GG~s~~s~G~ 51 (466)
T PRK08274 1 MASMVDVLVIGGGNAALCAALAARE--AGASVLLLEAAPREWRGGNSRHTRNL 51 (466)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCCcccccCCce
Confidence 3567899999999999999999999 8999999999863 34677777774
No 37
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.23 E-value=1.5e-07 Score=108.56 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=41.9
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 298 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii 298 (728)
.+.++||||||+|++|+++|+++++ .|.+|+||||.....++|..++|.+
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~--~Ga~VivlEK~~~~GG~s~~s~Gg~ 107 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKD--AGMNPVILEKMPVAGGNTMKASSGM 107 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCcccccCCcc
Confidence 3457899999999999999999999 8999999999876666666554443
No 38
>PRK06185 hypothetical protein; Provisional
Probab=98.19 E-value=1.7e-06 Score=96.49 Aligned_cols=37 Identities=30% Similarity=0.410 Sum_probs=34.2
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+.+.+||+|||||++|+++|+.|++ .|++|+|||+..
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~--~G~~v~liE~~~ 39 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLAR--AGVDVTVLEKHA 39 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence 4567899999999999999999999 899999999974
No 39
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.10 E-value=9.9e-07 Score=101.34 Aligned_cols=47 Identities=30% Similarity=0.344 Sum_probs=39.7
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 299 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~ 299 (728)
++||+|||+|++||++|+.+++ .|. |+||||.....++|..++|.+.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~--~G~-V~lleK~~~~~g~s~~a~Ggi~ 48 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALAD--QGR-VIVLSKAPVTEGNSFYAQGGIA 48 (488)
T ss_pred CccEEEECccHHHHHHHHHHHh--CCC-EEEEEccCCCCCcchhcCcCee
Confidence 4699999999999999999999 786 9999999766677766655443
No 40
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.97 E-value=5.2e-06 Score=92.47 Aligned_cols=222 Identities=14% Similarity=0.088 Sum_probs=119.3
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCC--CCccccccCCC----CCCC-CCch----hhhh--
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTS--DGAAGLFEPSP----NFMG-PDLE----TTKE-- 314 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS--~~agGii~p~~----~l~~-~~~~----~~~~-- 314 (728)
.++|||+|||||+|++.++.|++..+.++|+|+||-. ++..+| ..|+|-.+... |-.. ++.. +...
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~cElNYTpe~~dGsidi~KA~~In 81 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAGTGHAALCELNYTPEKADGSIDISKAVKIN 81 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccccchhhhhhccCCCCcCCCcccHHHHHHHH
Confidence 4689999999999999999999977899999999954 444444 24444443321 1111 1110 1111
Q ss_pred -hhhhccccccccccccccc-----EE---Ecccccccchhhhh----hcccccc--cchhcccc-CHHHHhhcCCC---
Q psy16975 315 -WIRYSYDHYAGLLSENCGV-----QV---INGYNLAKSEKQCA----ENHYLKP--VLPVYKRM-SEEELAEIGPG--- 375 (728)
Q Consensus 315 -~~~~s~~~~~~l~~~~~Gv-----~~---~~G~~~a~~~~~~~----~~~~~~~--~g~~~~~L-~~~el~~~~P~--- 375 (728)
-..-+.++|..+.+ .|. .| .+-+.+..-+++.+ +.+.++. .-...+.. |.+++++..|.
T Consensus 82 eqFevsrqfWs~lv~--~g~l~~p~~FI~~~PHmsfv~Ge~~v~fLkkR~~~l~~~~lF~~Me~sed~~~i~~w~PLvm~ 159 (488)
T PF06039_consen 82 EQFEVSRQFWSYLVE--NGILQNPESFINPVPHMSFVWGEENVDFLKKRYEALKEHPLFPGMEFSEDPEQIAEWAPLVME 159 (488)
T ss_pred HHHHHHHHHHHHHHH--CCCCCChHHhccCCCceEEEEChHhHHHHHHHHHHHhcCCCCCCcEEccCHHHHHhhCCeecC
Confidence 11233344444432 121 11 11122222222211 1122222 12233444 57777777664
Q ss_pred -----CcceeEeEEe-eeecCccceecccccCCCCCC-CCCCceeeEEEEEeeC-ceeEEE-eccccccccCCcchhHHH
Q psy16975 376 -----DWKYGIYMST-LVIPNRIFLPWCMQKDGPSNL-GERPSTLSVELYHYNR-DSLTVV-RGPLHEKVSSGPRTCAMQ 446 (728)
Q Consensus 376 -----~~~~G~~~~~-g~idp~~ll~~L~~~a~~~~~-G~~~~~l~v~I~e~t~-~~V~~~-~g~~v~~l~~~~~v~~v~ 446 (728)
....+.+.+. --+|=..+.+.|.+.+. +. | ++++.+++ ++++.. ++.|...+. ...
T Consensus 160 gR~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~--~~~~-------~~~~~~~eV~~i~r~~dg~W~v~~~------~~~ 224 (488)
T PF06039_consen 160 GRDPSEPVAATRVEEGTDVNFGALTRQLVEYLQ--KQKG-------FELHLNHEVTDIKRNGDGRWEVKVK------DLK 224 (488)
T ss_pred CCCCCCceeeeecCCCccccHHHHHHHHHHHHH--hCCC-------cEEEecCEeCeeEECCCCCEEEEEE------ecC
Confidence 1112233332 46677788888888887 55 6 89999888 556544 232332111 001
Q ss_pred HhhhccccccccccccccEEEcccccccchhhhhhccc----ccccchhccccC
Q psy16975 447 RAMQHDHYAGLLSENCGVQVINGYNLAKSEKQCAENHY----LKPVLPVYKRMS 496 (728)
Q Consensus 447 t~~~~g~ada~~VVnAa~~viaG~~~~~S~~L~~~~gi----~lpv~PvRGQl~ 496 (728)
+. ......++.|++.| |. +|-.|+...++ ..-.+|+-||-+
T Consensus 225 ~~-~~~~v~a~FVfvGA-----GG---~aL~LLqksgi~e~~gyggfPVsG~fl 269 (488)
T PF06039_consen 225 TG-EKREVRAKFVFVGA-----GG---GALPLLQKSGIPEGKGYGGFPVSGQFL 269 (488)
T ss_pred CC-CeEEEECCEEEECC-----ch---HhHHHHHHcCChhhcccCCCcccceEE
Confidence 11 02234445899988 88 88888887663 234678888743
No 41
>KOG1298|consensus
Probab=97.89 E-value=3.6e-06 Score=90.91 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=34.3
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
....+||+||||||+|++.||.|++ .|.+|.||||+.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~k--dGRrVhVIERDl 78 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAK--DGRRVHVIERDL 78 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhh--CCcEEEEEeccc
Confidence 3567899999999999999999999 899999999986
No 42
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.79 E-value=6.2e-06 Score=94.30 Aligned_cols=43 Identities=35% Similarity=0.538 Sum_probs=35.3
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 296 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agG 296 (728)
+||+|||||++|+++|+.+++ .|.+|+||||... .++|..+.|
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae--~G~~V~liek~~~-~~~s~~a~g 44 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAK--KGFDVTIIGPGIK-KSNSYLAQA 44 (466)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCeEEEEeCCCC-CCCcHHHcC
Confidence 699999999999999999999 8999999999853 334444433
No 43
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.77 E-value=9.8e-06 Score=88.70 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=33.0
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+.+||+|||||-+|+.+|..+++ +|++|+|||+..
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~ 36 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGP 36 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCc
Confidence 56899999999999999999999 999999999975
No 44
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.76 E-value=1.7e-05 Score=66.53 Aligned_cols=30 Identities=40% Similarity=0.561 Sum_probs=27.2
Q ss_pred EeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 255 ILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 255 VIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
|||||+.||++|+.|++ .|++|+|+|+...
T Consensus 1 IiGaG~sGl~aA~~L~~--~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK--AGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHH--TTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHH--CCCcEEEEecCcc
Confidence 89999999999999999 8999999999763
No 45
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.70 E-value=3e-05 Score=78.55 Aligned_cols=48 Identities=25% Similarity=0.377 Sum_probs=39.1
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 300 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p 300 (728)
..||+|||||-+||++||+|++ +|.+|+|+|+.....| -.|-||++.+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk--~g~kV~i~E~~ls~GG-G~w~GGmlf~ 77 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAK--AGLKVAIFERKLSFGG-GIWGGGMLFN 77 (262)
T ss_pred hccEEEECcCcchHHHHHHHHh--CCceEEEEEeecccCC-cccccccccc
Confidence 5699999999999999999999 9999999999864322 2355666555
No 46
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.67 E-value=2.7e-05 Score=88.09 Aligned_cols=47 Identities=28% Similarity=0.427 Sum_probs=41.9
Q ss_pred eEEEeecceechhhHHHhhhhCCC-CcEEEeecccccccCCCCccccccC
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNMDTTSDGAAGLFEP 300 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~~g~gAS~~agGii~p 300 (728)
||||||+|++|+++|+++++ .| .+|+||||.....++|..++|.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~--~G~~~V~vlEk~~~~gg~s~~s~g~~~~ 48 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKK--AGAANVVLLEKMPVIGGNSAIAAGGMNA 48 (439)
T ss_pred CEEEECCCHHHHHHHHHHHH--cCCccEEEEecCCCCCCcccccCceeec
Confidence 79999999999999999999 89 9999999998777888887766544
No 47
>PRK07121 hypothetical protein; Validated
Probab=97.66 E-value=2.8e-05 Score=89.46 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=43.7
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 299 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~ 299 (728)
.++||||||+|++|+++|+++++ .|.+|+||||.....++|..++|++.
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae--~G~~VillEK~~~~gG~s~~sgG~~~ 67 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAA--AGARVLVLERAAGAGGATALSGGVIY 67 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCcccccCeEEE
Confidence 47899999999999999999999 89999999998876778888887654
No 48
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.65 E-value=2.7e-05 Score=86.40 Aligned_cols=39 Identities=26% Similarity=0.485 Sum_probs=35.0
Q ss_pred cccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 246 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 246 ~~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
|++..+||+|||||++|+++|+.|++ .|++|+|||+...
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~--~G~~v~liE~~~~ 41 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALAR--AGASVALVAPEPP 41 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhc--CCCeEEEEeCCCC
Confidence 34567899999999999999999999 8999999999753
No 49
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.64 E-value=1.4e-05 Score=92.39 Aligned_cols=47 Identities=28% Similarity=0.265 Sum_probs=37.3
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc-ccCCCCccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM-DTTSDGAAGLF 298 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g-~gAS~~agGii 298 (728)
..+.||+|||+|++||++|++++. .+|+||||...+ .++|..+.|.+
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa~----~~V~lleK~~~~~gg~s~~a~Ggi 54 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLAP----RPVVVLSPAPLGEGASSAWAQGGI 54 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhCc----CCEEEEECCCCCCCcchHHhhhcc
Confidence 457899999999999999999975 499999998763 45565555444
No 50
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.63 E-value=3.5e-05 Score=88.68 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=34.8
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 289 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~g 289 (728)
+.+||||||||+.||+||..|++ .|++|+|+||.....|
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~--~G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLAR--AGLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHh--CCCEEEEEEecCCCCc
Confidence 46899999999999999999999 9999999999764433
No 51
>PLN02204 diacylglycerol kinase
Probab=97.61 E-value=6.2e-05 Score=86.89 Aligned_cols=70 Identities=24% Similarity=0.275 Sum_probs=61.8
Q ss_pred cchhHhHHHHHhhcC-C-CcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeecccccccccc
Q psy16975 6 HFGVWLIEEFLIGLA-S-GSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVT 75 (728)
Q Consensus 6 ~~~r~~~l~~~~~~~-~-g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~~ 75 (728)
+.|++++|.+|..+- + |.|+..|+|+|.|+++|+|++......+.+|||.+...|++++|+|++.+.+.+
T Consensus 526 ~~s~~~~L~~L~~l~~~gG~~l~~~~Ve~~ktk~f~~~s~~~~~~~niDGE~~~~~~v~v~V~~~al~lfa~ 597 (601)
T PLN02204 526 DCPHPLYLWHLTQLAKRGGEPLNFEFVEHHKTPAFTFTSFGDESVWNLDGEIFQAHQLSAQVFRGLVNLFAS 597 (601)
T ss_pred CCCHHHHHHHHHHHHhhcCccCCCCcEEEEEeeEEEEEECCCCceEEeCCCcCCCccEEEEEEcCeeEEEec
Confidence 578999999887775 3 699999999999999999999776678999999999999999999999965554
No 52
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.59 E-value=5.5e-05 Score=84.59 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=35.3
Q ss_pred cccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 246 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 246 ~~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
.+...+||+|||||++|+++|+.|++ .|++|+|||+...
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~ 52 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKD--SGLRIALIEAQPA 52 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhc--CCCEEEEEecCCc
Confidence 35567899999999999999999999 9999999999853
No 53
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.58 E-value=3.9e-05 Score=85.35 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=34.6
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
+...+||+|||||++|+++|+.|++ .|++|+|||+...
T Consensus 3 ~~~~~dV~IvGaG~aGl~~A~~La~--~G~~v~liE~~~~ 40 (392)
T PRK08773 3 RRSRRDAVIVGGGVVGAACALALAD--AGLSVALVEGREP 40 (392)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhc--CCCEEEEEeCCCC
Confidence 3567899999999999999999999 9999999999753
No 54
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.53 E-value=6.4e-05 Score=84.11 Aligned_cols=49 Identities=29% Similarity=0.348 Sum_probs=38.5
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 300 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p 300 (728)
+++||+|||||.+|+++|+.|++ .|++|+|+||+... +.-..+++.+.+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~--~G~~VlvlEk~~~~-G~k~~~~~~~~~ 50 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK--AGLDVLVLEKGSEP-GAKPCCGGGLSP 50 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH--cCCeEEEEecCCCC-CCCccccceech
Confidence 57899999999999999999999 89999999997532 222223455555
No 55
>PRK07208 hypothetical protein; Provisional
Probab=97.52 E-value=5.7e-05 Score=86.40 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=33.8
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
|+...||+|||||++||++||+|++ +|++|+|+|+..
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~--~g~~v~v~E~~~ 37 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLK--RGYPVTVLEADP 37 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence 4567799999999999999999999 899999999965
No 56
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.51 E-value=6.1e-05 Score=81.19 Aligned_cols=35 Identities=46% Similarity=0.651 Sum_probs=30.5
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
++||+|||||++||++|+.|++ .|++|+|||+...
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~--~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALAR--AGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHH--TTCEEEEEESSSS
T ss_pred CceEEEECCCHHHHHHHHHHHh--cccccccchhccc
Confidence 3699999999999999999999 9999999999753
No 57
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.51 E-value=5.8e-05 Score=76.82 Aligned_cols=35 Identities=40% Similarity=0.532 Sum_probs=29.9
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.++||+|||||.+||++||+|++ .|++|+|+|++.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~--~g~kV~v~E~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAK--AGLKVAVIERKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHH--HTS-EEEEESSS
T ss_pred ccCCEEEECCChhHHHHHHHHHH--CCCeEEEEecCC
Confidence 46899999999999999999999 899999999975
No 58
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.49 E-value=7.3e-05 Score=78.83 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=33.4
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
..+||+|||||.+||++|++|++ .|++|+||||...
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~--~G~~V~vlEk~~~ 55 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK--NGLKVCVLERSLA 55 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCC
Confidence 36899999999999999999999 8999999999864
No 59
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.49 E-value=5.9e-05 Score=84.53 Aligned_cols=47 Identities=23% Similarity=0.460 Sum_probs=38.4
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 300 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p 300 (728)
||+|||+|++||++|+++++ .|.+|+||||.....++|..++|.+..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae--~G~~V~lvek~~~~gg~~~~s~g~~~~ 47 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE--AGAKVLLVEKGPRLGGSSAFSSGGFDA 47 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH--TTT-EEEEESSSGGGSGGGGTCSEEEE
T ss_pred CEEEECCCHHHHHHHHHHhh--hcCeEEEEEeecccccccccccCceee
Confidence 89999999999999999999 999999999988655677666665544
No 60
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.49 E-value=7.5e-05 Score=84.53 Aligned_cols=35 Identities=34% Similarity=0.422 Sum_probs=33.0
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+||+|||||.+|+++|+.|++ .|++|+||||..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~--~G~~V~llEr~~ 38 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAR--EGAQVLVIERGN 38 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHh--CCCeEEEEEcCC
Confidence 46999999999999999999999 999999999975
No 61
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.49 E-value=7.8e-05 Score=86.36 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=40.9
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcc--ccccCC
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAA--GLFEPS 301 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~ag--Gii~p~ 301 (728)
.++||||||+| +|+++|+++++ .|.+|+||||.....++|..++ |++.+.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~--~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~ 57 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAR--EGLSVALVEATDKFGGTTAYSGGGGMWFPC 57 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHH--CCCcEEEEecCCCCCcceecCCCceeccCC
Confidence 47799999999 99999999999 8999999999876556665543 466653
No 62
>PRK09126 hypothetical protein; Provisional
Probab=97.48 E-value=6e-05 Score=83.65 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=33.5
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
+++||+|||||++|+++|+.|++ .|++|+|+||...
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAG--SGLKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCc
Confidence 36899999999999999999999 9999999999864
No 63
>PRK10015 oxidoreductase; Provisional
Probab=97.48 E-value=7.7e-05 Score=84.48 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=33.4
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
.++||+|||||.+|+++|+.|++ .|++|+||||...
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~--~G~~VlliEr~~~ 39 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMAR--AGLDVLVIERGDS 39 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCC
Confidence 46899999999999999999999 9999999999754
No 64
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.48 E-value=5.6e-05 Score=84.49 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=32.1
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+||+|||||++|+++|+.|++ .|++|+|||+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG--SGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 4799999999999999999999 899999999975
No 65
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.47 E-value=6.2e-05 Score=84.25 Aligned_cols=35 Identities=31% Similarity=0.562 Sum_probs=32.6
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
+..+||+|||||++|+++|+.|++ .|++|+|+|+.
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~--~G~~v~viE~~ 36 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKE--SDLRIAVIEGQ 36 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHh--CCCEEEEEcCC
Confidence 346899999999999999999999 89999999996
No 66
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.47 E-value=8.7e-05 Score=84.59 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=35.0
Q ss_pred cccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 246 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 246 ~~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+..+.+||+|||||.+|+++|+.|++ .|++|+|+|+..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAK--GGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence 45667999999999999999999999 999999999975
No 67
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.45 E-value=7.5e-05 Score=82.96 Aligned_cols=36 Identities=33% Similarity=0.466 Sum_probs=33.4
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
++..||+|||||++||++|+.|++ .|++|+|+||..
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~--~g~~v~v~Er~~ 37 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALAR--QGIKVKLLEQAA 37 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHh--CCCcEEEEeeCc
Confidence 456799999999999999999999 999999999975
No 68
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.45 E-value=8.7e-05 Score=87.39 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=41.4
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 299 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~ 299 (728)
..||+|||+|++||++|+++++ .|.+|+||||.....++|..++|.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lieK~~~~~g~s~~a~Ggi~ 50 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAE--AGVHVDLFSLVPVKRSHSVCAQGGIN 50 (589)
T ss_pred CccEEEECchHHHHHHHHHHHH--cCCcEEEEEccCCCCCcccccCCCeE
Confidence 4599999999999999999999 89999999999877677777755443
No 69
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.44 E-value=7.5e-05 Score=87.85 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=41.5
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 299 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~ 299 (728)
|..++||+|||+|++||++|+++++ . .+|+|+||..+..++|..++|.+.
T Consensus 2 ~~~~~DVlVIG~G~AGl~AAl~aa~--~-~~VilleK~~~~~g~s~~a~Ggi~ 51 (583)
T PRK08205 2 QQHRYDVVIVGAGGAGMRAAIEAGP--R-ARTAVLTKLYPTRSHTGAAQGGMC 51 (583)
T ss_pred cceeccEEEECccHHHHHHHHHHHh--C-CCEEEEeCCCCCCCCchhhhcchh
Confidence 4457899999999999999999998 5 899999999877777776655443
No 70
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.43 E-value=9e-05 Score=82.72 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=32.7
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
.+||+|||||++|+++|+.|++ .|++|+|||+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHH--CCCCEEEEECCCC
Confidence 4799999999999999999999 9999999999863
No 71
>PRK08013 oxidoreductase; Provisional
Probab=97.43 E-value=7.5e-05 Score=83.53 Aligned_cols=36 Identities=31% Similarity=0.507 Sum_probs=33.1
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
.++||+|||||++|+++|+.|++ .|++|+|||+...
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~--~G~~v~viE~~~~ 37 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQG--SGLRVAVLEQRVP 37 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhh--CCCEEEEEeCCCC
Confidence 35899999999999999999999 9999999999763
No 72
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.43 E-value=7.4e-05 Score=82.87 Aligned_cols=35 Identities=34% Similarity=0.441 Sum_probs=32.4
Q ss_pred CcceEEEeecceechhhHHHhhhhCC---CCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFP---NCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~---G~~VtVIEk~~ 285 (728)
+.+||+|||||++|+++|+.|++ . |++|+|+|+..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~--~~~~G~~v~v~E~~~ 39 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSR--LSHGGLPVALIEAFA 39 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhh--cccCCCEEEEEeCCC
Confidence 56899999999999999999999 7 99999999964
No 73
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.40 E-value=0.0001 Score=87.32 Aligned_cols=49 Identities=24% Similarity=0.298 Sum_probs=41.8
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 299 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~ 299 (728)
.++||+|||+|++|+++|+.+++ .|.+|+||||...+.++|..++|.+.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae--~G~~V~lieK~~~~~g~s~~a~Ggi~ 55 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARE--RGLRVAVVCKSLFGKAHTVMAEGGCA 55 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHH--CCCCEEEEeccCCCCCcceecCccce
Confidence 46899999999999999999999 89999999998776667766655443
No 74
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.40 E-value=8.8e-05 Score=82.47 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=32.0
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+||+|||||++|+++|+.|++ .|++|+|||+..
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~--~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK--QGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh--CCCcEEEEcCCC
Confidence 4799999999999999999999 899999999874
No 75
>PRK07045 putative monooxygenase; Reviewed
Probab=97.40 E-value=9.3e-05 Score=82.22 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=34.0
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
+.++||+|||||++|+++|+.|++ .|++|+|+|+...
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~--~G~~v~v~E~~~~ 39 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGA--RGHSVTVVERAAR 39 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHh--cCCcEEEEeCCCc
Confidence 456899999999999999999999 9999999999863
No 76
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.40 E-value=9.8e-05 Score=86.69 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=43.7
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 300 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p 300 (728)
.++||||||+|++|+++|+++++ .|.+|+||||.....++|..++|++..
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~--~G~~v~llEk~~~~gG~~~~s~g~~~~ 57 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARK--LGLDVVVLEKEPVFGGTTAFSGGVLWI 57 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--cCCeEEEEecCCCCCCccceeCcEecc
Confidence 46899999999999999999999 899999999988777787777776443
No 77
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.40 E-value=8.7e-05 Score=82.17 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=33.3
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
+.+||+|||||++|+++|+.|++ .|++|+|+|++..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQ--SGLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCC
Confidence 46799999999999999999999 8999999999754
No 78
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.38 E-value=9.1e-05 Score=82.26 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=33.3
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+||+|||||++|+++|+.|++ .|++|+|||+..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~--~G~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQ--HGFSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 456899999999999999999999 899999999975
No 79
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.37 E-value=0.0001 Score=85.97 Aligned_cols=49 Identities=27% Similarity=0.375 Sum_probs=41.8
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 298 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii 298 (728)
..++||+|||+|++||++|+.+++ .|.+|+||||.....++|..++|.+
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae--~G~~VilleK~~~~~g~s~~a~Ggi 62 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARR--AGRRVLVVTKAALDDGSTRWAQGGI 62 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHH--cCCeEEEEEccCCCCCchhhhccce
Confidence 357899999999999999999999 8999999999887666776665543
No 80
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.37 E-value=0.00013 Score=85.44 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=43.1
Q ss_pred cccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975 246 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 298 (728)
Q Consensus 246 ~~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii 298 (728)
|...++||+|||+|.+|+++|+.+++ .|.+|+||||.....++|..++|.+
T Consensus 3 ~~~~~~DvvVvG~G~aG~~aA~~aa~--~G~~v~llEk~~~~gG~~~~~~g~~ 53 (557)
T PRK07843 3 MTVQEYDVVVVGSGAAGMVAALTAAH--RGLSTVVVEKAPHYGGSTARSGGGV 53 (557)
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCccccccCcee
Confidence 34557899999999999999999999 8999999999876666777775543
No 81
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.37 E-value=9.6e-05 Score=86.78 Aligned_cols=52 Identities=33% Similarity=0.535 Sum_probs=39.6
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCC-CccccccC
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSD-GAAGLFEP 300 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~-~agGii~p 300 (728)
.++||+|||||++||++|+++++..+|.+|+||||.....++|. ..||+...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~ 54 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAAS 54 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhh
Confidence 46799999999999999999998323689999999876544444 44454433
No 82
>PRK07236 hypothetical protein; Provisional
Probab=97.35 E-value=0.00012 Score=81.48 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=32.7
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+..||+|||||++||++|+.|++ .|++|+|+||..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCC
Confidence 45799999999999999999999 899999999975
No 83
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.34 E-value=0.00012 Score=85.71 Aligned_cols=49 Identities=27% Similarity=0.426 Sum_probs=40.6
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 299 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~ 299 (728)
.++||+|||+|++||++|+.+++ .|.+|+||||.....++|..++|.+.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae--~G~~V~lveK~~~~~g~s~~a~Ggi~ 52 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIAS--AGFKVAVISKVFPTRSHSAAAEGGIA 52 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHH--CCCcEEEEEccCCCCCcchhhccchh
Confidence 46899999999999999999999 89999999998765566655544443
No 84
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.34 E-value=0.00011 Score=86.53 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=42.2
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 298 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii 298 (728)
..++||||||+|++|+++|+.+++ .|.+|+||||.....++|..++|.+
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae--~G~~VivlEk~~~~gG~t~~s~G~i 57 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAA--RGLDTLVVEKSAHFGGSTALSGGGI 57 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHH--CCCcEEEEEcCCCCCchHHHhCCCc
Confidence 346899999999999999999999 8999999999987677777665544
No 85
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.34 E-value=0.00014 Score=81.21 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=32.8
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
++||+|||||++||++|+.|++ .|++|+|+|+...
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~--~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL--AGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh--cCCCEEEEEcCCc
Confidence 5799999999999999999999 9999999999863
No 86
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.32 E-value=0.00016 Score=85.14 Aligned_cols=50 Identities=28% Similarity=0.425 Sum_probs=41.8
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 299 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~ 299 (728)
...+||+|||+|++||++|+++++ .|.+|+||||.....++|..+.|.+.
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~vleK~~~~~g~t~~a~Ggi~ 59 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLAR--AGLSVAVLSKVFPTRSHTVAAQGGIG 59 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCCchhccCCcc
Confidence 456899999999999999999999 89999999998766666666654443
No 87
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.31 E-value=0.00018 Score=76.02 Aligned_cols=36 Identities=36% Similarity=0.491 Sum_probs=33.2
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
.++||+|||||.+|+++|++|++ +|++|+|+|+...
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~--~G~~V~liEk~~~ 59 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK--AGLKVAVFERKLS 59 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh--CCCeEEEEecCCC
Confidence 46899999999999999999999 9999999999753
No 88
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.30 E-value=0.00015 Score=85.27 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=40.9
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCC---CcEEEeecccccccCCCCccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPN---CDVTVIADKFNMDTTSDGAAGLF 298 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G---~~VtVIEk~~~g~gAS~~agGii 298 (728)
..++||+|||+|++||++|+.+++ .| .+|+||||.....++|..++|.+
T Consensus 3 ~~~~DVlVVG~G~AGl~AA~~Aa~--~G~~~~~V~lleK~~~~~~~s~~a~Gg~ 54 (577)
T PRK06069 3 VLKYDVVIVGSGLAGLRAAVAAAE--RSGGKLSVAVVSKTQPMRSHSVSAEGGT 54 (577)
T ss_pred ceecCEEEECccHHHHHHHHHHHH--hCCCCCcEEEEEcccCCCCCceeccccc
Confidence 346799999999999999999999 77 89999999987666666665433
No 89
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.30 E-value=0.00014 Score=86.00 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=41.5
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 299 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~ 299 (728)
.++||+|||+|++||++|+++++ .|.+|+||||.....++|..+.|.+.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~lveK~~~~~g~t~~a~Ggi~ 76 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVE--LGYKTACISKLFPTRSHTVAAQGGIN 76 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHH--cCCcEEEEeccCCCCCCchhhcCCee
Confidence 46899999999999999999999 89999999998876666666655443
No 90
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.30 E-value=0.00014 Score=83.86 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=33.0
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 288 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~ 288 (728)
+||+|||||+.||++|..|++ .|++|+|+||+....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~--~G~~V~vlE~~~~~G 36 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAV--KGAKVLVLERYLIPG 36 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHH--CCCcEEEEECCCCCC
Confidence 589999999999999999999 999999999986443
No 91
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.30 E-value=0.00015 Score=84.80 Aligned_cols=48 Identities=15% Similarity=0.298 Sum_probs=42.2
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 298 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii 298 (728)
.++||+|||+|++|+++|++|++ .|.+|+|||+.....++|..++|.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~--~G~~v~liEk~~~~gG~~~~s~g~~ 52 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAAD--SGLEPLIVEKQDKVGGSTAMSGGVL 52 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeceeccee
Confidence 46899999999999999999999 8999999999876677777777654
No 92
>PLN02576 protoporphyrinogen oxidase
Probab=97.30 E-value=0.00017 Score=82.93 Aligned_cols=36 Identities=33% Similarity=0.514 Sum_probs=32.6
Q ss_pred cCcceEEEeecceechhhHHHhhhhCC-CCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~-G~~VtVIEk~~ 285 (728)
+.++||+|||||++||++||+|++ . |++|+|+|+..
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~--~~g~~v~vlEa~~ 46 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALAS--KHGVNVLVTEARD 46 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHH--hcCCCEEEEecCC
Confidence 345699999999999999999999 7 99999999975
No 93
>PRK06847 hypothetical protein; Provisional
Probab=97.28 E-value=0.00016 Score=79.70 Aligned_cols=36 Identities=36% Similarity=0.498 Sum_probs=32.9
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
....||+|||||++||++|+.|++ .|++|+|+|+..
T Consensus 2 ~~~~~V~IVGaG~aGl~~A~~L~~--~g~~v~v~E~~~ 37 (375)
T PRK06847 2 AAVKKVLIVGGGIGGLSAAIALRR--AGIAVDLVEIDP 37 (375)
T ss_pred CCcceEEEECCCHHHHHHHHHHHh--CCCCEEEEecCC
Confidence 346799999999999999999999 899999999974
No 94
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.28 E-value=0.00015 Score=85.56 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=41.0
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 299 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~ 299 (728)
..+||+|||||++||++|+++++ .|.+|+||||..+..++|..+.|.+.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~--~G~~V~lveK~~~~~g~s~~a~Ggi~ 59 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAE--AGLKTACITKVFPTRSHTVAAQGGIS 59 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCcchhhhcCCcc
Confidence 46899999999999999999999 89999999998766666666644443
No 95
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.28 E-value=0.00016 Score=80.65 Aligned_cols=33 Identities=45% Similarity=0.599 Sum_probs=31.7
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.+||+|||||++||++|+.|++ .|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~--~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR--AGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEccC
Confidence 4699999999999999999999 99999999998
No 96
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.27 E-value=0.00015 Score=80.77 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=31.0
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
|||+|||||.+|+++|++|++ .|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~--~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR--AGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECC
Confidence 699999999999999999999 89999999997
No 97
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.27 E-value=0.00017 Score=84.15 Aligned_cols=48 Identities=25% Similarity=0.334 Sum_probs=39.7
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc--ccccCCCCcccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF--NMDTTSDGAAGL 297 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~--~g~gAS~~agGi 297 (728)
..++||+|||+|.+||++|+.+++ .|.+|+||||.. ...++|..++|.
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~--~G~~VivlEK~~~~~~GG~s~~s~Gg 51 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELAD--AGKRVLLLDQENEANLGGQAFWSLGG 51 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCCCceeccCCc
Confidence 357899999999999999999999 899999999987 334556555443
No 98
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.27 E-value=0.00015 Score=85.41 Aligned_cols=48 Identities=19% Similarity=0.381 Sum_probs=40.5
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 298 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii 298 (728)
.++||+|||+|++||++|+++++ .|.+|+||||..+..++|..+.|.+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lleK~~~~~g~t~~a~Ggi 53 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQ--SGQSCALLSKVFPTRSHTVSAQGGI 53 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCCccHHhhhhH
Confidence 46799999999999999999999 8999999999876666666554444
No 99
>PRK06834 hypothetical protein; Provisional
Probab=97.26 E-value=0.00019 Score=82.59 Aligned_cols=36 Identities=36% Similarity=0.500 Sum_probs=33.2
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
..+||+|||||++|+++|+.|++ .|++|+|||+...
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~--~G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL--AGVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCC
Confidence 35799999999999999999999 9999999999753
No 100
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.26 E-value=0.00014 Score=86.19 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=41.3
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 299 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~ 299 (728)
.++||+|||+|++||++|+++++ .|.+|+||||..+..++|..+.|.+.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae--~G~~VilveK~~~~~g~s~~a~Ggi~ 97 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSE--HGFNTACITKLFPTRSHTVAAQGGIN 97 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHh--cCCcEEEEEcCCCCCCchHHhhcCce
Confidence 35799999999999999999999 89999999999876666666654443
No 101
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.26 E-value=0.00014 Score=80.04 Aligned_cols=33 Identities=30% Similarity=0.597 Sum_probs=31.3
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
||+|||||++|+++|+.|++ .|++|+|+||...
T Consensus 1 dViIvGaG~aGl~~A~~L~~--~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR--SGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc--CCCEEEEEeCCCc
Confidence 79999999999999999999 8999999999864
No 102
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.26 E-value=2.9e-05 Score=87.80 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=28.3
Q ss_pred EeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 255 ILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 255 VIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
|||+|++|+++|+++++ .|.+|+||||...
T Consensus 1 VVG~G~AGl~AA~~Aa~--~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARR--AGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHh--CCCcEEEEeCCCC
Confidence 79999999999999999 8999999999764
No 103
>PRK06126 hypothetical protein; Provisional
Probab=97.26 E-value=0.00017 Score=84.04 Aligned_cols=37 Identities=35% Similarity=0.489 Sum_probs=33.9
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+..+||+|||||++||++|+.|++ .|++|+|||+..
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~--~G~~v~viEr~~ 40 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGR--RGVDSILVERKD 40 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCC
Confidence 3457899999999999999999999 999999999874
No 104
>PRK13059 putative lipid kinase; Reviewed
Probab=97.25 E-value=0.00039 Score=74.84 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=61.6
Q ss_pred cchhHhHHHHHhhcCCCcccccCc-eeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccc
Q psy16975 6 HFGVWLIEEFLIGLASGSHIKVPG-VEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV 74 (728)
Q Consensus 6 ~~~r~~~l~~~~~~~~g~h~~~~~-v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~ 74 (728)
+.++++++.+|..+-+|+|...+. |+|++++.++|++..+ =.+.+|||.++..|++.+|.|+..+.++
T Consensus 223 ~~~~~~~l~~~~~~~~G~~~~~~~~v~~~~~~~i~i~~~~~-~~~~~DGE~~~~~p~~i~v~p~al~v~~ 291 (295)
T PRK13059 223 ACPIIDLIPLFIKVLKGEHLEDVNGLIYFKTDKLEIESNEE-IVTDIDGERGPDFPLNIECIKGGLKVLG 291 (295)
T ss_pred CCCHHHHHHHHHHHHcCCccCCCccEEEEEeeEEEEEeCCC-ceEEeCCCcCCCCcEEEEEecCeeEEEe
Confidence 578999999999999999999999 9999999999998543 4788999999999999999999996666
No 105
>PRK07233 hypothetical protein; Provisional
Probab=97.24 E-value=0.00018 Score=80.63 Aligned_cols=33 Identities=39% Similarity=0.613 Sum_probs=30.8
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
+|+|||||++||++|++|++ .|++|+|+|+..-
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~--~G~~v~vlE~~~~ 33 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK--RGHEVTVFEADDQ 33 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEEeCCC
Confidence 58999999999999999999 8999999999763
No 106
>KOG0029|consensus
Probab=97.24 E-value=0.0002 Score=82.45 Aligned_cols=38 Identities=39% Similarity=0.528 Sum_probs=33.7
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-cc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NM 287 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g 287 (728)
..+.+|+|||||++|||+|.+|.+ .|++|+|+|... +|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~--~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQD--FGFDVLVLEARDRVG 51 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHH--cCCceEEEeccCCcC
Confidence 456799999999999999999999 899999999854 44
No 107
>PRK06370 mercuric reductase; Validated
Probab=97.23 E-value=0.00022 Score=81.44 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=36.6
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDT 289 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~g 289 (728)
|+.++||+|||||..|+++|+.|++ .|++|+|||+...+.+
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~~GG~ 42 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAG--LGMKVALIERGLLGGT 42 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCccCCc
Confidence 5667999999999999999999999 8999999999765543
No 108
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.23 E-value=0.00019 Score=81.01 Aligned_cols=32 Identities=44% Similarity=0.703 Sum_probs=29.8
Q ss_pred eEEEeecceechhhHHHhhhhCCC--CcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPN--CDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G--~~VtVIEk~~ 285 (728)
+|+|||||++||++|+.|++ .| ++|+|+|+..
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~--~G~~~~V~vlEa~~ 35 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHK--KGPDADITLLEASD 35 (451)
T ss_pred eEEEECCCHHHHHHHHHHHH--hCCCCCEEEEEcCC
Confidence 69999999999999999999 66 8999999964
No 109
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.22 E-value=0.0002 Score=74.72 Aligned_cols=32 Identities=41% Similarity=0.610 Sum_probs=30.6
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|+|||+||+|+++|+.|++ .|.+|+|+||+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALRE--AGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHh--cCcEEEEEEcCC
Confidence 69999999999999999999 999999999975
No 110
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.00021 Score=80.84 Aligned_cols=33 Identities=42% Similarity=0.615 Sum_probs=31.2
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
+|+|+|||++||+|||+|++ +|++|||+|++..
T Consensus 2 rVai~GaG~AgL~~a~~La~--~g~~vt~~ea~~~ 34 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELAD--AGYDVTLYEARDR 34 (485)
T ss_pred eEEEEcccHHHHHHHHHHHh--CCCceEEEeccCc
Confidence 69999999999999999999 9999999999763
No 111
>PLN02985 squalene monooxygenase
Probab=97.21 E-value=0.00022 Score=82.72 Aligned_cols=37 Identities=30% Similarity=0.404 Sum_probs=34.0
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
....+||+|||||++|+++|+.|++ .|++|+|+||..
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~--~G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAK--DGRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHH--cCCeEEEEECcC
Confidence 4567899999999999999999999 899999999974
No 112
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.21 E-value=0.00021 Score=81.25 Aligned_cols=35 Identities=31% Similarity=0.592 Sum_probs=30.9
Q ss_pred ceEEEeecceechhhHHHhhhhCC--CCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFP--NCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~--G~~VtVIEk~~ 285 (728)
.||+|||||++||++||+|++..+ |++|+|+|+..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~ 39 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASD 39 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCC
Confidence 589999999999999999999212 99999999965
No 113
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.20 E-value=0.00017 Score=85.82 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=39.2
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 296 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agG 296 (728)
..+||+|||||++||++|+++++ .|.+|+||||..+..++|..+.|
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae--~G~~VivleK~~~~~s~s~~a~G 49 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQ--RGLDTIVLSLVPAKRSHSAAAQG 49 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHH--cCCCEEEEeCCCCCCcchHHHhh
Confidence 46899999999999999999999 89999999998776555555433
No 114
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.19 E-value=0.00022 Score=80.89 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=32.8
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
++|||+|||||.+|+++|+.|++ .|++|+|||++.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCCC
Confidence 46899999999999999999999 899999999974
No 115
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.19 E-value=0.00022 Score=83.54 Aligned_cols=43 Identities=30% Similarity=0.537 Sum_probs=37.0
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 296 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agG 296 (728)
||+|||+|++|+++|+.+++ .|.+|+||||.....++|..++|
T Consensus 1 DVlVVG~G~AGl~AA~~aae--~G~~V~lleK~~~~~g~s~~a~G 43 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAK--AGLNTAVISKVYPTRSHTVAAQG 43 (566)
T ss_pred CEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCCcchhhcc
Confidence 79999999999999999999 89999999998765555555543
No 116
>PRK06184 hypothetical protein; Provisional
Probab=97.18 E-value=0.00026 Score=81.66 Aligned_cols=35 Identities=34% Similarity=0.503 Sum_probs=32.8
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.++||+|||||++||++|+.|++ .|++|+||||..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~--~Gi~v~viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR--RGVSFRLIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCC
Confidence 46799999999999999999999 999999999975
No 117
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.17 E-value=0.00024 Score=79.06 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=31.2
Q ss_pred cceEEEeecceechhhHHHhhhhCC--CCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFP--NCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~--G~~VtVIEk~~ 285 (728)
.+||+|||||++||++|+.|++ . |++|+|||+..
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~--~g~g~~v~liE~~~ 36 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQ--AAPHLPVTVVDAAP 36 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhc--CCCCCEEEEEeCCC
Confidence 3699999999999999999999 6 59999999975
No 118
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.17 E-value=0.00025 Score=83.41 Aligned_cols=51 Identities=27% Similarity=0.397 Sum_probs=41.0
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 299 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~ 299 (728)
.++||+|||||++||++|+.+++..+|.+|+||||..+..++|..++|.+.
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~ 53 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSA 53 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhh
Confidence 357999999999999999999983236899999999776667766655443
No 119
>PLN02268 probable polyamine oxidase
Probab=97.16 E-value=0.00024 Score=80.24 Aligned_cols=32 Identities=28% Similarity=0.540 Sum_probs=30.3
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|+|||||++||++|++|.+ .|++|+|+|+..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~--~g~~v~vlEa~~ 33 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD--ASFKVTLLESRD 33 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCC
Confidence 79999999999999999999 899999999864
No 120
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.16 E-value=0.00021 Score=78.96 Aligned_cols=33 Identities=36% Similarity=0.597 Sum_probs=31.2
Q ss_pred eEEEeecceechhhHHHhhhhCCC-CcEEEeecccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFN 286 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~~ 286 (728)
||+|||||++|+++|+.|++ .| ++|+|+|+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR--LGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhc--CCCceEEEEeCCCc
Confidence 79999999999999999999 99 99999999854
No 121
>PRK11445 putative oxidoreductase; Provisional
Probab=97.15 E-value=0.0003 Score=77.39 Aligned_cols=32 Identities=34% Similarity=0.347 Sum_probs=30.4
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+||+|||||++|+++|+.|++ . ++|+|||+..
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~--~-~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG--K-MKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc--c-CCEEEEECCC
Confidence 699999999999999999999 8 9999999975
No 122
>PRK12839 hypothetical protein; Provisional
Probab=97.15 E-value=0.00032 Score=82.31 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=42.8
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccc-cccC
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG-LFEP 300 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agG-ii~p 300 (728)
+..++||+|||+|++|+++|+.|++ .|.+|+||||.....+++..++| ++.+
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~--~g~~v~~iek~~~~gg~~~~~~g~~~~~ 57 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAY--GGAKVLVVEKASTCGGATAWSGGWMWTP 57 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCccccccCCeeecC
Confidence 3457899999999999999999999 89999999998766666666654 4444
No 123
>PRK08244 hypothetical protein; Provisional
Probab=97.15 E-value=0.00028 Score=81.21 Aligned_cols=34 Identities=32% Similarity=0.386 Sum_probs=32.2
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
++||+|||||++||++|+.|++ .|++|+||||..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viEr~~ 35 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL--AGVKTCVIERLK 35 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence 4799999999999999999999 999999999975
No 124
>PLN02815 L-aspartate oxidase
Probab=97.15 E-value=0.00023 Score=83.74 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=40.8
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 298 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii 298 (728)
..++||+|||+|++||++|+.+++ .| +|+||||.....++|..++|.+
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae--~G-~VvlleK~~~~gg~s~~a~Ggi 74 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAE--YG-TVAIITKDEPHESNTNYAQGGV 74 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhh--CC-CEEEEECCCCCCCcHHHhhccc
Confidence 346899999999999999999999 88 9999999987777777665543
No 125
>PRK06753 hypothetical protein; Provisional
Probab=97.14 E-value=0.00026 Score=78.03 Aligned_cols=33 Identities=42% Similarity=0.572 Sum_probs=31.3
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
||+|||||++||++|+.|++ .|++|+|+|+...
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~--~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE--QGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCc
Confidence 79999999999999999999 8999999999863
No 126
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.13 E-value=0.00033 Score=79.86 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=33.3
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
++..|||+|||||.+|+++|++|++ .|++|+|||++
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~--~G~~v~liE~~ 37 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAK--LGKRVAVIERY 37 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHh--CCCEEEEEecc
Confidence 3457999999999999999999999 89999999996
No 127
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.13 E-value=0.00031 Score=82.64 Aligned_cols=50 Identities=30% Similarity=0.484 Sum_probs=41.0
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 299 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~ 299 (728)
++||+|||+|++||++|+.+++..+|.+|+||||.....++|..++|.+.
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~ 52 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSA 52 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchh
Confidence 57999999999999999999983246899999999876667766655543
No 128
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.13 E-value=0.00021 Score=81.05 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=39.9
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 299 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~ 299 (728)
..++||+|||+|.+||++|+.+ . .|.+|+||||.....++|..++|.+.
T Consensus 2 ~~~~DVvVVG~G~AGl~AA~~a-~--~G~~V~lleK~~~~gg~s~~a~ggi~ 50 (433)
T PRK06175 2 NLYADVLIVGSGVAGLYSALNL-R--KDLKILMVSKGKLNECNTYLAQGGIS 50 (433)
T ss_pred CccccEEEECchHHHHHHHHHh-c--cCCCEEEEecCCCCCCchHHHhHhhe
Confidence 3568999999999999999997 4 58999999998776666666655443
No 129
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.13 E-value=0.00024 Score=78.71 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=31.2
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+||+|||||++|+++|+.|++ .|++|+|+|+..
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~--~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ--KGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc--CCCeEEEecCCC
Confidence 589999999999999999999 899999999874
No 130
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.13 E-value=0.00042 Score=81.25 Aligned_cols=50 Identities=16% Similarity=0.404 Sum_probs=42.0
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccc-cccC
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG-LFEP 300 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agG-ii~p 300 (728)
..++||||||+| +|+++|+.+++ .|.+|+||||.....|+|..++| +|.+
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~--~G~~v~v~Ek~~~~GG~~~~~gG~~~~~ 64 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHE--LGLSVLIVEKSSYVGGSTARSGGAFWLP 64 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHH--CCCcEEEEecCCCCcCcccCcCCCEecC
Confidence 458999999999 89999999999 89999999998666677777754 4444
No 131
>PRK13337 putative lipid kinase; Reviewed
Probab=97.12 E-value=0.00061 Score=73.64 Aligned_cols=73 Identities=19% Similarity=0.125 Sum_probs=64.2
Q ss_pred cchhHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeecccccccccccccC
Q psy16975 6 HFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVTTEYL 79 (728)
Q Consensus 6 ~~~r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~~~~~~ 79 (728)
+.++++++.+|..+-.|+|...|.|+|++++.++|++..+ =.+.||||.+...|+..+|+|.-.+.++.++..
T Consensus 225 ~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~~~-~~~~iDGE~~~~~p~~i~v~p~al~v~~p~~~~ 297 (304)
T PRK13337 225 KANLAELIHIATLALRGEHIKHPKVIYTKANRIKVSSFDK-MQLNLDGEYGGKLPAEFENLYRHIEVFVPKDQE 297 (304)
T ss_pred CCCHHHHHHHHHHHHcCCcCCCCcEEEEEccEEEEEcCCC-CeEEeCCCcCCCCCEEEEEecceEEEEeccccc
Confidence 4688999999999999999999999999999999998654 477899999999999999999999777755443
No 132
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.11 E-value=0.0003 Score=81.92 Aligned_cols=48 Identities=29% Similarity=0.309 Sum_probs=40.4
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 299 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~ 299 (728)
.++||+|||+|++||++|+++++ . .+|+||||.....++|..++|.+.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~--~-~~VilveK~~~~~g~t~~a~Ggi~ 54 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAE--H-RRVAVLSKGPLSEGSTFYAQGGIA 54 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHH--C-CCEEEEeccCCCCCChhhccCCee
Confidence 46799999999999999999998 5 799999998876677777765443
No 133
>PLN02661 Putative thiazole synthesis
Probab=97.10 E-value=0.00033 Score=76.86 Aligned_cols=37 Identities=41% Similarity=0.688 Sum_probs=32.6
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
.++||+|||||++|+++||+|++. +|++|+|||+...
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~ 127 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVS 127 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCcc
Confidence 467999999999999999999972 4899999999753
No 134
>PRK07588 hypothetical protein; Provisional
Probab=97.09 E-value=0.00029 Score=78.36 Aligned_cols=32 Identities=44% Similarity=0.451 Sum_probs=30.7
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
||+|||||++||++|+.|++ .|++|+|+|+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~--~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR--YGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHH--CCCceEEEeCCC
Confidence 89999999999999999999 899999999974
No 135
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.08 E-value=0.00031 Score=82.09 Aligned_cols=48 Identities=31% Similarity=0.358 Sum_probs=39.4
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 298 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii 298 (728)
..++||+|||+|++|+++|++++ .|.+|+||||.....++|..++|.+
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~---~G~~V~lieK~~~~gg~s~~a~Ggi 54 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP---SHLRVGLITKDTLKTSASDWAQGGI 54 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh---cCCCEEEEEccCCCCCchhhhcccc
Confidence 45789999999999999999985 4889999999887666776664433
No 136
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.08 E-value=0.00034 Score=74.08 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=31.7
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
+||+|||||.+|+++|+.|++ .|++|+|||+..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~ 34 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGMEP 34 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCC
Confidence 589999999999999999999 8999999998753
No 137
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.08 E-value=0.00035 Score=80.36 Aligned_cols=36 Identities=31% Similarity=0.461 Sum_probs=32.8
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMD 288 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~ 288 (728)
.||+|||||+.||++|..|++ .|++|+|+|++. +|.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~--~G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAK--RGYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCC
Confidence 489999999999999999999 999999999985 443
No 138
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.08 E-value=0.00037 Score=78.77 Aligned_cols=33 Identities=45% Similarity=0.743 Sum_probs=29.8
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.|+||||||+||++||+|++..+..+|+|+|++
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~ 34 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEAD 34 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 699999999999999999994444999999996
No 139
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.07 E-value=0.00035 Score=80.91 Aligned_cols=47 Identities=32% Similarity=0.434 Sum_probs=39.2
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 299 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~ 299 (728)
++||+|||+|++||++|+++++ |.+|+||||.....++|..++|.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~---g~~V~lveK~~~~~g~s~~a~Ggi~ 49 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH---EYNVIIITKKTKRNSNSHLAQGGIA 49 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc---CCCEEEEeccCCCCCCchhcCccce
Confidence 6799999999999999999965 6899999999877777766655443
No 140
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.04 E-value=0.00031 Score=83.53 Aligned_cols=48 Identities=25% Similarity=0.308 Sum_probs=38.7
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCcc-ccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAA-GLF 298 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~ag-Gii 298 (728)
.++||+|||+|++||++|+++++ .|.+|+||||.. ++.++|..+. |+.
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae--~G~~VilieK~~~~~~g~s~~a~GGi~ 83 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGE--LGYNVKVFCYQDSPRRAHSIAAQGGIN 83 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHH--cCCcEEEEecCCCCCcchhHHhhhchH
Confidence 46799999999999999999999 899999999854 4445555554 443
No 141
>PRK07538 hypothetical protein; Provisional
Probab=97.04 E-value=0.00034 Score=78.51 Aligned_cols=33 Identities=39% Similarity=0.489 Sum_probs=31.1
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+||+|||||++||++|+.|++ .|++|+|+|+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~ 33 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQ--RGIEVVVFEAAP 33 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEEcCC
Confidence 389999999999999999999 899999999975
No 142
>PRK06116 glutathione reductase; Validated
Probab=97.04 E-value=0.00036 Score=79.32 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=34.4
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g 287 (728)
+.+|||+|||||..|+++|+.|++ .|++|+|||++..|
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~--~G~~V~liE~~~~G 39 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAM--YGAKVALIEAKRLG 39 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccchh
Confidence 346899999999999999999999 89999999997544
No 143
>PRK05868 hypothetical protein; Validated
Probab=97.01 E-value=0.0004 Score=77.11 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=31.1
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.||+|||||++||++|+.|++ .|++|+|+|+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~--~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR--HGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCC
Confidence 389999999999999999999 999999999974
No 144
>PLN02568 polyamine oxidase
Probab=97.01 E-value=0.00044 Score=80.56 Aligned_cols=38 Identities=26% Similarity=0.504 Sum_probs=33.3
Q ss_pred cccCcceEEEeecceechhhHHHhhhhCCC-----CcEEEeeccc
Q psy16975 246 VMGSNHKVAILGAGIIGLSTALELQRRFPN-----CDVTVIADKF 285 (728)
Q Consensus 246 ~~~~~~dVvVIGAGIiGLStA~~La~~~~G-----~~VtVIEk~~ 285 (728)
||++..||+|||||++||++|++|++ .| ++|+|+|+..
T Consensus 1 ~~~~~~~v~iiGaG~aGl~aa~~L~~--~g~~~~~~~v~v~E~~~ 43 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTAANKLYT--SSAANDMFELTVVEGGD 43 (539)
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHh--cccccCCceEEEEeCCC
Confidence 35566899999999999999999998 55 8999999965
No 145
>KOG2614|consensus
Probab=97.00 E-value=0.0005 Score=75.70 Aligned_cols=37 Identities=43% Similarity=0.679 Sum_probs=33.0
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 288 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~ 288 (728)
+.+|+||||||+||++|..|.+ .|++|+|+|+.....
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR--KGIDVVVLESREDPR 38 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH--cCCeEEEEeeccccc
Confidence 3479999999999999999999 999999999965443
No 146
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=96.99 E-value=0.00036 Score=80.36 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=30.1
Q ss_pred EEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 253 VvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
|||||||+.||++|..|++ .|++|+|+|++..
T Consensus 1 vvVIGaG~~GL~aA~~La~--~G~~V~VlE~~~~ 32 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAA--AGIPVTVVEQRDK 32 (502)
T ss_pred CEEECcCHHHHHHHHHHHh--CCCcEEEEECCCC
Confidence 6899999999999999999 9999999999764
No 147
>PTZ00367 squalene epoxidase; Provisional
Probab=96.98 E-value=0.00045 Score=80.85 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=32.9
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+||+|||||++|+++|+.|++ .|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar--~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSK--QGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHh--cCCEEEEEcccc
Confidence 46899999999999999999999 899999999975
No 148
>PRK07190 hypothetical protein; Provisional
Probab=96.98 E-value=0.00053 Score=78.97 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=33.3
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+..+||+|||||.+||++|+.|++ .|.+|+||||..
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar--~Gi~V~llEr~~ 38 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQL--CGLNTVIVDKSD 38 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHH--cCCCEEEEeCCC
Confidence 346899999999999999999999 899999999985
No 149
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.97 E-value=0.00054 Score=78.32 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=34.3
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 288 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~ 288 (728)
.++||+|||||..|+++|..|++ .|.+|+|||++..+.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~--~G~~V~lie~~~~GG 40 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQ--LGLKTAVVEKKYWGG 40 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCCC
Confidence 46899999999999999999999 899999999975543
No 150
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.97 E-value=0.00047 Score=80.47 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=38.2
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc-cccCCCCccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN-MDTTSDGAAGLF 298 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~-g~gAS~~agGii 298 (728)
.++||+|||+|++||++|+.+ + .|.+|+||||... .+++|..++|.+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~--~G~~VilleK~~~~~gG~s~~a~gg~ 53 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-E--RGKNVVIVSKGLFGKSGCTVMAEGGY 53 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-h--cCCCEEEEEccCCCCCccccccCceE
Confidence 357999999999999999999 8 8999999999865 345565555544
No 151
>PRK13057 putative lipid kinase; Reviewed
Probab=96.96 E-value=0.0012 Score=70.67 Aligned_cols=68 Identities=22% Similarity=0.348 Sum_probs=61.3
Q ss_pred cchhHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccc
Q psy16975 6 HFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV 74 (728)
Q Consensus 6 ~~~r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~ 74 (728)
..++++++.+|..+-+|.|...++|++.+++.++|+...+ =.+.||||.+...|++.+|.|+..+.++
T Consensus 216 ~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~~~-~~~~~DGE~~~~~p~~i~v~p~al~v~~ 283 (287)
T PRK13057 216 VAHWWRLLALLPALRRGRHGEWPDVRAFRTTELELRTRKP-RPINTDGELTTYTPAHFRVLPKALRVLA 283 (287)
T ss_pred CCCHHHHHHHHHHHhcCCccCCCcEEEEEeeEEEEEeCCC-cEEeeCCccCCCCCEEEEEECCeEEEEc
Confidence 5688999999999999999999999999999999998654 4689999999999999999999996655
No 152
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.96 E-value=0.00053 Score=80.99 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=36.0
Q ss_pred eEEEeecceechhhHHHhh----hhCCCCcEEEeecccccccCCCCcccc
Q psy16975 252 KVAILGAGIIGLSTALELQ----RRFPNCDVTVIADKFNMDTTSDGAAGL 297 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La----~~~~G~~VtVIEk~~~g~gAS~~agGi 297 (728)
||+|||||++||++|+.++ + .|.+|+||||......+| .++|+
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e--~G~~VilieK~~~~~s~s-~A~G~ 47 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDK--KGLKIVLVEKANLERSGA-VAQGL 47 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhh--CCCeEEEEEccCCCCCCc-ccccc
Confidence 7999999999999999998 5 799999999987654444 56564
No 153
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.95 E-value=0.00053 Score=80.23 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=34.2
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g 287 (728)
...|||+|||||.+|+++|++|++ +|++|+|||++..+
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~~~G 39 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKDDFG 39 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCC
Confidence 346899999999999999999999 89999999997543
No 154
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=96.94 E-value=0.0011 Score=71.14 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=60.0
Q ss_pred cchhHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeecccccccc
Q psy16975 6 HFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERT 73 (728)
Q Consensus 6 ~~~r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~ 73 (728)
..++++++.++..+-.|.|...|.|++.+++.++|+...+ -.+.||||.+...|++.+|+|+..+.+
T Consensus 226 ~~~~~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~i~~~~~-~~~~iDGE~~~~~p~~i~v~p~al~~~ 292 (293)
T TIGR00147 226 NDNLLPALVLTLMSDEGKHTDNPNIIYGKASRIDIQTPHK-ITFNLDGEPLGGTPFHIEILPAHLRCR 292 (293)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCcEEEEEccEEEEEcCCC-cEEEeCCCcCCCCcEEEEEEhhccEEe
Confidence 4689999999999999999999999999999999997653 578999999999999999999987544
No 155
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.93 E-value=0.00055 Score=79.91 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=43.5
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCc-cccccC
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA-AGLFEP 300 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~a-gGii~p 300 (728)
+..++||+|||||.+||.+|+.+++ .|.+|+|+||..+..++|..+ +|++..
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~--~g~~V~l~~K~~~~rg~t~~a~gG~~a~ 55 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAE--AGLKVALLSKAPPKRGHTVAAQGGINAA 55 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHh--cCCcEEEEEccccCCCchhhhccccccc
Confidence 4567899999999999999999999 899999999988766776655 444444
No 156
>PRK13055 putative lipid kinase; Reviewed
Probab=96.93 E-value=0.0011 Score=72.64 Aligned_cols=69 Identities=20% Similarity=0.257 Sum_probs=61.8
Q ss_pred cchhHhHHHHHhhcCC-CcccccCceeeEEcceeEEeecCC-CcEEEEcceEeeecccceeeccccccccc
Q psy16975 6 HFGVWLIEEFLIGLAS-GSHIKVPGVEMIPVEAFRLVPHSS-GSYIVVDGEVLDYGPIQAEIFPGLIERTV 74 (728)
Q Consensus 6 ~~~r~~~l~~~~~~~~-g~h~~~~~v~~~~v~a~rl~p~~~-~g~i~vDGE~~~~~~~q~ev~~~l~~~~~ 74 (728)
+.++++++.+|..+-+ |.|...++|+|.+++.++|++..+ .-.+.+|||.+...|++.+|+|+..+.++
T Consensus 229 ~~~~~~~l~~~~~~~~~G~~~~~~~v~~~~~~~i~I~~~~~~~~~~~iDGE~~~~~pv~i~v~p~al~v~~ 299 (334)
T PRK13055 229 TANLFELLHLMALILNGGKHIDDPRVIYIKTSKLTIEPLGDDRLMVNLDGEYGGDAPMTFENLKQHIEFFA 299 (334)
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcEEEEEccEEEEEeCCCCcceEeeCCCcCCCCcEEEEEEcCeEEEEe
Confidence 4688999999999999 999999999999999999998653 35789999999999999999999996666
No 157
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=96.92 E-value=0.00057 Score=76.07 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=31.0
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+||+|||||++|+++|+.|++ .|.+|+|||+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~--~G~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ--LNKRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCeEEEEecCC
Confidence 599999999999999999998 899999999864
No 158
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.90 E-value=0.00056 Score=76.66 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=31.3
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+||+|||||.+|+++|+.|++ .|++|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~--~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS--AGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh--CCCcEEEEecCC
Confidence 489999999999999999999 999999999975
No 159
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.90 E-value=0.00058 Score=76.69 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=31.2
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.||+|||||.+|+.+|+.|++ +|++|+|+|+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr--~Gl~V~LiE~rp 35 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK--RGVPVELYEMRP 35 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccC
Confidence 589999999999999999999 999999999865
No 160
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.90 E-value=0.00033 Score=81.79 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=30.7
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
+||+|||||.+|+.+|+.+++ .|.+|+|+|++
T Consensus 1 yDViVIGaG~AGl~aA~ala~--~G~~v~Lie~~ 32 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAAR--MGAKTLLLTLN 32 (617)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCCEEEEecc
Confidence 699999999999999999999 89999999986
No 161
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.90 E-value=0.00058 Score=79.66 Aligned_cols=36 Identities=31% Similarity=0.567 Sum_probs=33.4
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+..+||+|||||++||++|+.|++ .|++|+||||..
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viE~~~ 56 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQ--QGVPVVLLDDDD 56 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCC
Confidence 356799999999999999999999 899999999985
No 162
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.90 E-value=0.0005 Score=76.26 Aligned_cols=32 Identities=41% Similarity=0.646 Sum_probs=30.4
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
||+|||||++|+++|++|++ .|++|+|||+..
T Consensus 1 DviIiGaG~AGl~~A~~la~--~g~~v~liE~~~ 32 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR--PGLRVQLIEPHP 32 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCeEEEEccCC
Confidence 79999999999999999999 899999999974
No 163
>PRK00861 putative lipid kinase; Reviewed
Probab=96.90 E-value=0.0014 Score=70.56 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=57.8
Q ss_pred cchhHhHHH----HHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccc
Q psy16975 6 HFGVWLIEE----FLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV 74 (728)
Q Consensus 6 ~~~r~~~l~----~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~ 74 (728)
..|+++++. +|..+-+|+|.+.++|+|++++.++|+... .-.+.+|||.++..|++.+|+|+..+.++
T Consensus 224 ~~~~~~~l~~~~~l~~~~~~g~~~~~~~v~~~~~~~i~I~~~~-~~~~~~DGE~~~~~p~~i~v~p~al~v~~ 295 (300)
T PRK00861 224 PKNLAEAVAASYHLLQTALQGNPAERDDIGYLRAKQVKITTDP-PQKVVIDGEVVGTTPIEIECLPRSLKVFA 295 (300)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCceEEEEccEEEEEeCC-CeEEEECCccCCCceEEEEEECCEEEEEe
Confidence 357788774 566677899999999999999999999765 35789999999999999999999996654
No 164
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.89 E-value=0.00058 Score=76.35 Aligned_cols=33 Identities=42% Similarity=0.523 Sum_probs=31.1
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|+|||||++||++|+.|++ +|++|+|+|+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~--~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA--RGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence 479999999999999999999 999999999974
No 165
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.89 E-value=0.00068 Score=79.78 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=42.4
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGL 297 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGi 297 (728)
...++||+|||+|++|+++|+.+++ .|.+|+||||.....++|..++|+
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~--~g~~v~~iek~~~~gg~~~~~~g~ 57 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAW--HGLKVIVVEKDPVFGGTTAWSGGW 57 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCccccccCce
Confidence 3457899999999999999999999 899999999987666777777665
No 166
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.89 E-value=0.00063 Score=77.91 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=34.9
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g 287 (728)
|...|||+|||||..|+++|+.|++ .|.+|+|||++.+|
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~~~G 39 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQ--LGLKTALVEKGKLG 39 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCCC
Confidence 3457999999999999999999999 99999999997543
No 167
>PRK06996 hypothetical protein; Provisional
Probab=96.89 E-value=0.0006 Score=76.22 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=33.8
Q ss_pred cccCcceEEEeecceechhhHHHhhhhCCC----CcEEEeecccc
Q psy16975 246 VMGSNHKVAILGAGIIGLSTALELQRRFPN----CDVTVIADKFN 286 (728)
Q Consensus 246 ~~~~~~dVvVIGAGIiGLStA~~La~~~~G----~~VtVIEk~~~ 286 (728)
|..+.+||+|||||++|+++|+.|++ .| ++|+|+|+...
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~--~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLAR--RSATRALSIALIDAREP 49 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhc--CCCcCCceEEEecCCCC
Confidence 45567899999999999999999999 65 57999999753
No 168
>PRK11914 diacylglycerol kinase; Reviewed
Probab=96.89 E-value=0.0013 Score=71.18 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=59.3
Q ss_pred cchhHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccc
Q psy16975 6 HFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV 74 (728)
Q Consensus 6 ~~~r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~ 74 (728)
..++++++.+|..+-+|+|++.|.|+|++++.++|+.. + =.+.+|||.+...|++.+|+|+..+.++
T Consensus 236 ~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~i~i~~~-~-~~~~~DGE~~~~~p~~i~v~p~al~v~v 302 (306)
T PRK11914 236 SASRTRLLRLFPTVFKGTHVELDEVSTARAKTVHVECP-G-INAYADGDFACPLPAEISAVPGALQILR 302 (306)
T ss_pred cCCHHHHHHHHHHhcCCcccCCCcEEEEEeEEEEEEcC-C-cceecCCCcCCCCceEEEEEcCeEEEEC
Confidence 36789999999999999999999999999999999964 2 2578999999988999999999996665
No 169
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.87 E-value=0.00053 Score=77.72 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=30.7
Q ss_pred ceEEEeecceechhhHHHhhhhC--CCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~--~G~~VtVIEk~~ 285 (728)
+||+|||||++|+++|+.|++.. .|++|+|||+..
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 58999999999999999999721 489999999953
No 170
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.86 E-value=0.00063 Score=77.55 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=29.3
Q ss_pred eEEEeecceechhhHHHhhhhC----CCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRF----PNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~----~G~~VtVIEk~~ 285 (728)
+|+|||||++||++||+|++.. .|++|+|+|+..
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~ 40 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEE 40 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCC
Confidence 6999999999999999999831 248999999964
No 171
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.86 E-value=0.00066 Score=77.30 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=33.2
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 288 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~ 288 (728)
.|||+|||||.+|+++|++|++ .|.+|+|||++.+|.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~--~G~~v~lie~~~~GG 37 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQ--LGLKVALVEKEYLGG 37 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCCC
Confidence 3799999999999999999999 899999999955443
No 172
>PLN02463 lycopene beta cyclase
Probab=96.84 E-value=0.00067 Score=77.25 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=32.5
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+||+|||||.+|+++|++|++ .|++|+|||+..
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~--~Gl~V~liE~~~ 61 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSE--AGLSVCCIDPSP 61 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHH--CCCeEEEeccCc
Confidence 46899999999999999999999 899999999864
No 173
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.83 E-value=0.00074 Score=76.96 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=33.4
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g 287 (728)
.+|||+|||||.+|+++|..|++ .|.+|+|||++..+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~G 38 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK--LGKKVALIEKGPLG 38 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCccc
Confidence 46899999999999999999999 89999999995443
No 174
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=96.83 E-value=0.00071 Score=77.13 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=33.3
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g 287 (728)
+|||+|||||..|+++|+.|++ .|++|+|+|++..|
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~~~~G 37 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAE--HGAKALLVEAKKLG 37 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCcEEEecccccc
Confidence 5899999999999999999999 99999999997544
No 175
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=96.83 E-value=0.00059 Score=76.77 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=26.0
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
|||+|||||.+|+.+|+.|++ .|.+|+|+||..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~--~g~~V~vlE~~~ 33 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAE--KGARVLVLERNK 33 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHH--TT--EEEE-SSS
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCc
Confidence 699999999999999999999 999999999975
No 176
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=96.81 E-value=0.00076 Score=76.70 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=33.3
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g 287 (728)
+|||+|||||..|+++|+.+++ .|++|+|+|++.+|
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~G 37 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN--HGAKVAIAEEPRVG 37 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCccC
Confidence 5899999999999999999999 99999999997544
No 177
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.80 E-value=0.00073 Score=80.13 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=33.1
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+..+|+|||||++||++|+.|++ .|++|+|+||+.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEeccc
Confidence 456789999999999999999999 899999999974
No 178
>KOG2960|consensus
Probab=96.80 E-value=0.00055 Score=68.96 Aligned_cols=50 Identities=26% Similarity=0.371 Sum_probs=39.1
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 300 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p 300 (728)
..||+|||||-+|||+||+++++.+..+|.|||..-.+.|.+ |-||.+..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa-WLGGQLFS 125 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA-WLGGQLFS 125 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc-cccchhhh
Confidence 459999999999999999999766899999999986544433 44444433
No 179
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.80 E-value=0.00078 Score=76.36 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=32.8
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
++|||+|||||.+|+++|..|++ .|++|+|||++.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~--~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLAS--AGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHh--CCCEEEEEecCC
Confidence 36899999999999999999999 899999999974
No 180
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.79 E-value=0.0008 Score=79.59 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=33.5
Q ss_pred CcceEEEeecceechhhHHHhhhhCC--CCcEEEeeccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFP--NCDVTVIADKFNM 287 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~--G~~VtVIEk~~~g 287 (728)
.++||+|||||++||++|+++++ . |.+|+||||....
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae--~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKE--WAPDLKVLIVEKANIK 48 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHH--hCCCCeEEEEECCCcC
Confidence 35799999999999999999999 6 9999999998754
No 181
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.78 E-value=0.00087 Score=76.68 Aligned_cols=36 Identities=36% Similarity=0.492 Sum_probs=33.0
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
....+|+|||||.+||++|.+|++ .|++|+|+|+..
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~ 43 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREK 43 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCC
Confidence 446799999999999999999999 899999999974
No 182
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.78 E-value=0.0008 Score=78.37 Aligned_cols=36 Identities=31% Similarity=0.350 Sum_probs=33.4
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+..+||+|||||++||++|+.|++ .|++|+||||..
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~--~G~~v~v~Er~~ 43 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ--YGVRVLVLERWP 43 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence 456899999999999999999999 899999999985
No 183
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.77 E-value=0.00083 Score=76.32 Aligned_cols=32 Identities=38% Similarity=0.453 Sum_probs=30.2
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|+|||||++||++|++|++ .|++|+|+|+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~--~G~~v~vlE~~~ 32 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD--AGHTPIVLEARD 32 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence 48999999999999999999 999999999875
No 184
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.76 E-value=0.00096 Score=79.32 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=33.8
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCC-CCcEEEeeccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADKF 285 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~-G~~VtVIEk~~ 285 (728)
|+.++||+|||||++||++|+.|++ . |.+|+|||+..
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar--~~Gi~v~IiE~~~ 66 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSA--FPDITTRIVERKP 66 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhc--CCCCcEEEEEcCC
Confidence 4567899999999999999999999 6 99999999974
No 185
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=96.75 E-value=0.001 Score=75.73 Aligned_cols=38 Identities=16% Similarity=0.069 Sum_probs=35.0
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
|+..+||+|||+|+.||.+|..|++ .|.+|.++|++..
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~--~GkkVLhlD~n~~ 38 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSV--NGKKVLHMDRNPY 38 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhh--CCCEEEEecCCCC
Confidence 4568999999999999999999999 9999999999753
No 186
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.73 E-value=0.0012 Score=76.56 Aligned_cols=39 Identities=28% Similarity=0.403 Sum_probs=33.4
Q ss_pred CcceEEEeecceechhhHHHhhhhC--CCCcEEEeeccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKFNM 287 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~--~G~~VtVIEk~~~g 287 (728)
...+|+|||||++|||+|++|++.. +|.+|+|+|+....
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~ 61 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVP 61 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCC
Confidence 3578999999999999999999942 57899999998643
No 187
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.71 E-value=0.001 Score=84.24 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=41.3
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 298 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii 298 (728)
...+||||||+|.+|+++|+++++ .|.+|+||||.....++|..++|.+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae--~Ga~VivlEK~~~~GG~s~~s~ggi 455 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAAS--CGAQVILLEKEAKLGGNSAKATSGI 455 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEccCCCCCchhhccccc
Confidence 346899999999999999999999 8999999999876667776555443
No 188
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.70 E-value=0.00084 Score=74.65 Aligned_cols=32 Identities=47% Similarity=0.573 Sum_probs=29.8
Q ss_pred eEEEeecceechhhHHHh--hhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALEL--QRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~L--a~~~~G~~VtVIEk~~ 285 (728)
||+|||||.+|+++|++| ++ +|.+|+|||+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~--~g~~Vllid~~~ 34 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADAR--PGLSVLLIDPKP 34 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcC--CCCEEEEEcCCc
Confidence 899999999999999999 66 899999999975
No 189
>PLN02697 lycopene epsilon cyclase
Probab=96.70 E-value=0.00098 Score=77.38 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=32.3
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+||+|||||.+|+++|+.|++ .|++|+|||+..
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak--~Gl~V~LIe~~~ 141 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAK--LGLNVGLIGPDL 141 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHh--CCCcEEEecCcc
Confidence 46899999999999999999999 899999999863
No 190
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.68 E-value=0.001 Score=70.95 Aligned_cols=33 Identities=24% Similarity=0.219 Sum_probs=28.7
Q ss_pred ceEEEeecceechhhHHHhhhhCCC-CcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~ 285 (728)
||+||||+|..|+.+|..|++ .+ .+|+|||++.
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~--~~~~~VlvlEaG~ 34 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSE--AGNKKVLVLEAGP 34 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTT--STTS-EEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHhh--CCCCcEEEEEccc
Confidence 699999999999999999999 55 7999999975
No 191
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.67 E-value=0.0011 Score=74.77 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=32.1
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
++||+|||+|++|+++|+.|++ .|.+|+|||++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~--~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAE--AGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHH--CCCcEEEEECCC
Confidence 5899999999999999999999 899999999974
No 192
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.66 E-value=0.0013 Score=77.36 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=41.1
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 298 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii 298 (728)
.++||+|||+|.+|+++|+.+++ .|.+|+||||.....++|..++|.+
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~--~g~~v~l~ek~~~~gg~~~~s~g~~ 62 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAI--AGLKVLLVERTEYVGGTTATSAGTT 62 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCcccccCcee
Confidence 46799999999999999999999 8999999999876667776666543
No 193
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.63 E-value=0.0011 Score=74.31 Aligned_cols=32 Identities=34% Similarity=0.565 Sum_probs=29.6
Q ss_pred eEEEeecceechhhHHHhhhhCCC-CcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~ 285 (728)
+|+|||||++||++|+.|++ .| .+|+|+||..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~--~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCK--HSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHh--cCCCCEEEEecCC
Confidence 69999999999999999999 77 5999999974
No 194
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.62 E-value=0.0013 Score=74.61 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=27.2
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
||||||||.+|+++|+.+++ .|.+|+|||+...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~ 33 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGF 33 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSS
T ss_pred CEEEECccHHHHHHHHHHHH--CCCEEEEEECCcc
Confidence 89999999999999999999 9999999999753
No 195
>KOG1276|consensus
Probab=96.61 E-value=0.0015 Score=72.20 Aligned_cols=38 Identities=34% Similarity=0.448 Sum_probs=31.3
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+.++|+|+||||.||++||+|++.++...|+|+|++.
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~ 46 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP 46 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC
Confidence 34568999999999999999999955555677799863
No 196
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0014 Score=71.03 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=32.0
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCc-EEEeeccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKFNM 287 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~~~g 287 (728)
+.+||+|||||.+||++|.++++ .+++ ++|+|+..++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~~~~g 39 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEGGEPG 39 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHH--cCCCcEEEEecCCcC
Confidence 46899999999999999999999 9988 6667666555
No 197
>PRK14694 putative mercuric reductase; Provisional
Probab=96.61 E-value=0.0014 Score=74.95 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=34.5
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g 287 (728)
...+||+|||||..|+++|..|++ .|.+|+|||++.+|
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~--~g~~v~lie~~~~G 41 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATE--RGARVTLIERGTIG 41 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEEccccc
Confidence 357899999999999999999999 89999999997654
No 198
>KOG1399|consensus
Probab=96.58 E-value=0.0015 Score=74.12 Aligned_cols=36 Identities=36% Similarity=0.451 Sum_probs=33.1
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
++..+|+|||||.+||++|.+|.+ .|++|+|+||..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~~ 39 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLR--EGHEVVVFERTD 39 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHH--CCCCceEEEecC
Confidence 456799999999999999999999 899999999964
No 199
>PRK08275 putative oxidoreductase; Provisional
Probab=96.57 E-value=0.0013 Score=77.07 Aligned_cols=39 Identities=18% Similarity=0.326 Sum_probs=33.6
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g 287 (728)
..+||+|||+|++|+++|+++++..+|.+|+||||....
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 457999999999999999999983237899999998753
No 200
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.57 E-value=0.0014 Score=75.34 Aligned_cols=32 Identities=47% Similarity=0.688 Sum_probs=30.2
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|+|||||++||++|++|++ .|++|+|+|+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~--~G~~v~v~E~~~ 32 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVD--AGHEVDIYESRS 32 (474)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEEecC
Confidence 48999999999999999999 899999999975
No 201
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.55 E-value=0.0017 Score=69.59 Aligned_cols=35 Identities=31% Similarity=0.529 Sum_probs=32.7
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+++||+|||||++|+++|+.|++ .|.++.||-++.
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~--~Gk~c~iv~~gQ 35 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQ--AGKRCAIVNRGQ 35 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHh--cCCcEEEEeCCh
Confidence 46899999999999999999999 999999999875
No 202
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.55 E-value=0.0019 Score=74.08 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=32.8
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
+.+|||+|||||..|+++|..|++ .|++|+|||+.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~ 36 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAAD--LGLETVCVERY 36 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHH--CCCcEEEEecC
Confidence 457999999999999999999999 89999999986
No 203
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.55 E-value=0.0013 Score=73.92 Aligned_cols=46 Identities=33% Similarity=0.406 Sum_probs=40.6
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 300 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p 300 (728)
||+|||+|++||++|+.|++ . ++|+||-|...+.++|.++-|-+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~--~-~~V~vltk~~~~~~sS~~AQGGIAa 54 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP--S-FRVTVLTKGPLGESSSYWAQGGIAA 54 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC--C-CcEEEEeCCCCCCccchhhcCceEe
Confidence 89999999999999999998 4 8999999998888888888655544
No 204
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.55 E-value=0.0015 Score=76.53 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=32.8
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
+..+||+|||||.+|+.+|+.+++ .|.+|+|||++
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~ 36 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHN 36 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHH--cCCcEEEEecc
Confidence 356999999999999999999999 99999999986
No 205
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.53 E-value=0.0017 Score=74.19 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=33.4
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
..|||+|||||.+|+++|+.|++ .|++|+|+|++..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~--~G~~V~liE~~~~ 38 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ--LGLKVAIVEKEKL 38 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH--CCCcEEEEecccc
Confidence 46899999999999999999999 8999999999764
No 206
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.53 E-value=0.0016 Score=72.43 Aligned_cols=34 Identities=35% Similarity=0.486 Sum_probs=30.6
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
||+|||||++|+++|+.|++..+|++|+|+|+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 7999999999999999999832499999999975
No 207
>PRK02106 choline dehydrogenase; Validated
Probab=96.50 E-value=0.0016 Score=76.34 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=34.6
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
|...+|+||||+|.+|+.+|..|++. +|++|+|||++.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG~ 39 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAGG 39 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCCC
Confidence 45679999999999999999999995 699999999984
No 208
>PTZ00058 glutathione reductase; Provisional
Probab=96.49 E-value=0.0022 Score=75.11 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=35.0
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 288 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~ 288 (728)
..+|||+|||||..|.++|+.+++ .|.+|+|||++..|.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~--~G~~ValIEk~~~GG 84 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAAR--NKAKVALVEKDYLGG 84 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHH--cCCeEEEEecccccc
Confidence 357899999999999999999999 899999999985443
No 209
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.48 E-value=0.0018 Score=64.54 Aligned_cols=31 Identities=48% Similarity=0.772 Sum_probs=29.2
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
||+|||||.+|+++|++|++ .+.+|+|+|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~--~~~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR--PGAKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhc--CCCeEEEEecc
Confidence 79999999999999999998 99999999765
No 210
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.48 E-value=0.0014 Score=77.42 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=35.7
Q ss_pred EEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccc
Q psy16975 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAG 296 (728)
Q Consensus 253 VvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agG 296 (728)
|+|||+|++||++|+++++ .|.+|+||||.. ++.++|..+.|
T Consensus 1 VlVVG~G~AGl~AAl~Aae--~G~~VilleK~~~~~~g~s~~a~G 43 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAE--LGYHVKLFSYVDAPRRAHSIAAQG 43 (603)
T ss_pred CEEECccHHHHHHHHHHHH--cCCCEEEEEecCCCCCccchhhhh
Confidence 6899999999999999999 899999999987 55555655543
No 211
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.47 E-value=0.0018 Score=73.99 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=32.9
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 288 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~ 288 (728)
|||+|||||..|+++|..|++ .|.+|+|||++..+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~--~g~~v~lie~~~~GG 36 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE--LGASVAMVERGPLGG 36 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCcccC
Confidence 699999999999999999999 999999999976443
No 212
>PRK10262 thioredoxin reductase; Provisional
Probab=96.45 E-value=0.002 Score=69.75 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=33.0
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
...+||+|||||.+|+++|+.|++ .|++|+|||+...
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~--~g~~~~~ie~~~~ 40 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEK 40 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH--CCCCeEEEEeecC
Confidence 356799999999999999999999 8999999997543
No 213
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.44 E-value=0.0024 Score=68.94 Aligned_cols=34 Identities=41% Similarity=0.618 Sum_probs=30.2
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+|+|||+||+|||+||.|++ -++||++|.+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~---rhdVTLfEA~~ 40 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSR---RHDVTLFEADR 40 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhc---ccceEEEeccc
Confidence 35689999999999999999998 36999999975
No 214
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.44 E-value=0.0018 Score=73.08 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=30.3
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
||+|||||.+|+.+|+.|++ .|++|+|+|+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr--~G~~V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQ--AGVPVILYEMRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCcEEEEeccc
Confidence 79999999999999999999 999999999864
No 215
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.42 E-value=0.0024 Score=73.30 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=32.0
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeec
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk 283 (728)
...||++|||||.+|+++|+.|++ .|.+|+|||+
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~--~g~~v~lie~ 35 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQ--LGLKVACIEA 35 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHh--CCCeEEEEec
Confidence 346899999999999999999999 8999999998
No 216
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.41 E-value=0.002 Score=64.39 Aligned_cols=30 Identities=37% Similarity=0.495 Sum_probs=24.4
Q ss_pred EEeecceechhhHHHhhhhCCCCc-EEEeeccc
Q psy16975 254 AILGAGIIGLSTALELQRRFPNCD-VTVIADKF 285 (728)
Q Consensus 254 vVIGAGIiGLStA~~La~~~~G~~-VtVIEk~~ 285 (728)
+|||||.+||++|++|.+ .|.+ |+|||++.
T Consensus 1 ~IIGaG~aGl~~a~~l~~--~g~~~v~v~e~~~ 31 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE--RGIDPVVVLERND 31 (203)
T ss_dssp EEE--SHHHHHHHHHHHH--TT---EEEEESSS
T ss_pred CEECcCHHHHHHHHHHHh--CCCCcEEEEeCCC
Confidence 699999999999999999 8999 99999974
No 217
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=96.41 E-value=0.0021 Score=71.74 Aligned_cols=36 Identities=33% Similarity=0.562 Sum_probs=33.1
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
....||+|||||.+||++||+|.+ .|++|+|+|...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k--aG~~v~ilEar~ 40 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK--AGYQVQILEARD 40 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh--cCcEEEEEeccC
Confidence 456799999999999999999999 999999999864
No 218
>PRK12831 putative oxidoreductase; Provisional
Probab=96.39 E-value=0.0026 Score=72.92 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=32.7
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
....||+|||||.+|+++|++|++ .|++|+|+|+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~ 173 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALH 173 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCC
Confidence 346799999999999999999999 899999999864
No 219
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.38 E-value=0.0025 Score=73.06 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=32.9
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeec-cccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD-KFNM 287 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk-~~~g 287 (728)
++|||+|||||-.|+++|..+++ .|.+|+|||+ +.+|
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~--~G~~V~liE~~~~~G 39 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQ--LGLKVACVEGRSTLG 39 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCcee
Confidence 35899999999999999999999 9999999997 4443
No 220
>PLN02676 polyamine oxidase
Probab=96.37 E-value=0.0023 Score=73.78 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=32.3
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~ 285 (728)
...+||+|||||+.||++|++|++ .|. +|+|+|+..
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~--~g~~~v~vlE~~~ 60 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSE--AGIEDILILEATD 60 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--cCCCcEEEecCCC
Confidence 346799999999999999999999 888 599999975
No 221
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.36 E-value=0.0024 Score=74.57 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=34.5
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+..++|+||||+|..|+.+|..|+. +|.+|+|||++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~--~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSD--AGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcC--CCCeEEEEeCCC
Confidence 5678999999999999999999997 999999999983
No 222
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.35 E-value=0.0022 Score=79.22 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=34.1
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g 287 (728)
.++||+|||+|++||++|+++++ .|.+|+||||..++
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~--~G~~V~lleK~~~~ 48 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAE--HGANVLLLEKAHVR 48 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHH--CCCeEEEEeccccc
Confidence 46899999999999999999999 89999999998763
No 223
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.32 E-value=0.0025 Score=78.72 Aligned_cols=35 Identities=49% Similarity=0.594 Sum_probs=32.4
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..++|+|||||.+|+++|++|++ .|++|+|+|+..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCeEEEEeccc
Confidence 35799999999999999999999 899999999874
No 224
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.0029 Score=72.13 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=33.8
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCc-EEEeeccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKF 285 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~~ 285 (728)
++..+||+|||||..|+++|++|.+ .|.. ++|+||..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~--~g~~~~~i~Ek~~ 42 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQ--AGVPDFVIFEKRD 42 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHH--cCCCcEEEEEccC
Confidence 4567899999999999999999999 8888 99999985
No 225
>PRK13748 putative mercuric reductase; Provisional
Probab=96.29 E-value=0.0026 Score=74.38 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=34.1
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g 287 (728)
.++||+|||||..|+++|..|++ .|.+|+|||++.+|
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~--~G~~v~lie~~~~G 133 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE--QGARVTLIERGTIG 133 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCcce
Confidence 47999999999999999999999 89999999998554
No 226
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.26 E-value=0.0035 Score=53.77 Aligned_cols=32 Identities=31% Similarity=0.500 Sum_probs=30.0
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.|+|||||.+|+-+|..|++ .|.+|+|+++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHH--hCcEEEEEeccc
Confidence 48999999999999999999 899999999975
No 227
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.23 E-value=0.0037 Score=71.32 Aligned_cols=36 Identities=39% Similarity=0.557 Sum_probs=32.9
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...++|+|||||.+|+++|++|++ .|++|+|+|+..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~ 166 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAK--AGHSVTVFEALH 166 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence 346799999999999999999999 899999999864
No 228
>PLN02612 phytoene desaturase
Probab=96.20 E-value=0.0033 Score=73.87 Aligned_cols=35 Identities=34% Similarity=0.390 Sum_probs=32.1
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+|+|||||++||++|++|++ .|++|+|+|+..
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~--~g~~~~~~e~~~ 126 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLAD--AGHKPILLEARD 126 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEecCC
Confidence 35689999999999999999999 999999999964
No 229
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.11 E-value=0.0039 Score=77.22 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=31.8
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+|+|||||.+||++|++|++ .|++|+|+|+..
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~ 339 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFH 339 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCC
Confidence 5689999999999999999999 999999999874
No 230
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.08 E-value=0.0039 Score=75.36 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=32.5
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+|+|||||++|+++|+.|++ .|++|+|+|+..
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~--~g~~v~v~E~~~ 271 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLS--MGFKVVVLEGRA 271 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeccc
Confidence 45789999999999999999999 999999999964
No 231
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.07 E-value=0.0039 Score=69.80 Aligned_cols=35 Identities=26% Similarity=0.493 Sum_probs=32.5
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+++|||||++|+++|+.|++ .|++|.++||+.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKep 157 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEP 157 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCC
Confidence 35689999999999999999999 999999999985
No 232
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.02 E-value=0.003 Score=71.07 Aligned_cols=47 Identities=32% Similarity=0.444 Sum_probs=37.0
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCcccccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFE 299 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~ 299 (728)
+||+|||+|++|+++|+.|++ .|++|+|+|++......|+.+.+++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~--~g~~v~lv~~~~~~~~~s~gs~d~L~ 47 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAE--AGKKCAIIAAGQSALHFSSGSLDLLS 47 (419)
T ss_pred CCEEEECchHHHHHHHHHHHH--CCCCEEEEeCCCchhhhhhHHHhHhh
Confidence 589999999999999999999 89999999998644333443434444
No 233
>PLN02487 zeta-carotene desaturase
Probab=96.01 E-value=0.0047 Score=72.45 Aligned_cols=35 Identities=40% Similarity=0.572 Sum_probs=32.1
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
..+|+|||||+.||++|++|++ .|++|+|+|+..-
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~--~g~~v~i~E~~~~ 109 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLD--QGHEVDIYESRPF 109 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCeeEEEecCCC
Confidence 3589999999999999999999 8999999999753
No 234
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.96 E-value=0.0045 Score=71.84 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=32.0
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
...+||+|||||.+|+++|.+|++ .|++|+|+++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~~ 243 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAER 243 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC
Confidence 346899999999999999999999 99999999864
No 235
>PRK13054 lipid kinase; Reviewed
Probab=95.92 E-value=0.01 Score=64.08 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=53.7
Q ss_pred hHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccc
Q psy16975 9 VWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV 74 (728)
Q Consensus 9 r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~ 74 (728)
+++++.+|..+-.|.|...|.|+|++++.++|+... .-.+.||||.+...|++.+|+|+..+.++
T Consensus 228 ~~~~l~~l~~~~~g~~~~~~~v~~~~~~~v~i~~~~-~~~~~iDGE~~~~~p~~i~v~p~al~vl~ 292 (300)
T PRK13054 228 PQELLPTLLSTLTGGSEDNPNIIRARLPWLEIQAPH-ELTFNLDGEPLSGRHFRIEVLPAALRCRL 292 (300)
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEcCC-CCEEEeCCCcCCCccEEEEEEcCeeEEEe
Confidence 456676666666676666899999999999999753 46789999999999999999999996665
No 236
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.90 E-value=0.0071 Score=69.64 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=32.5
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+|+|||||.+|+++|+.|++..+|++|+|+|+..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 3568999999999999999998644699999999975
No 237
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.88 E-value=0.0066 Score=69.64 Aligned_cols=36 Identities=36% Similarity=0.484 Sum_probs=32.8
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...++|+|||||.+|+++|+.|++ .|++|+|+|+..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~ 176 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERAD 176 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence 345799999999999999999999 899999999974
No 238
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=95.86 E-value=0.0068 Score=64.97 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=32.2
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMD 288 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~ 288 (728)
+|++|||||+.|+.+|..|++ .|.+|.||||.. +|+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~--~gk~VLIvekR~HIGG 38 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQ--LGKRVLIVEKRNHIGG 38 (374)
T ss_pred CcEEEECCchhHHHHHHHHHH--cCCEEEEEeccccCCC
Confidence 699999999999999998888 899999999964 443
No 239
>PLN02507 glutathione reductase
Probab=95.84 E-value=0.0069 Score=70.10 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=31.9
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeec
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk 283 (728)
..+|||+|||||..|+++|+.|++ .|.+|+|||+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~--~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSAN--FGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHH--CCCeEEEEec
Confidence 346899999999999999999999 8999999997
No 240
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.83 E-value=0.0055 Score=71.14 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=31.7
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
...+||+|||||.+|+++|++|++ .|++|+||++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~~ 244 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAER 244 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC
Confidence 346899999999999999999999 99999999753
No 241
>PTZ00052 thioredoxin reductase; Provisional
Probab=95.82 E-value=0.0056 Score=70.84 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=31.7
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
..|||+|||||.+|+++|..|++ .|.+|+|||+.
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~--~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAA--HGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHh--CCCeEEEEecc
Confidence 35899999999999999999999 99999999974
No 242
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.80 E-value=0.0065 Score=72.63 Aligned_cols=35 Identities=43% Similarity=0.503 Sum_probs=32.3
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+|+|||||.+||++|++|++ .|++|+|+|+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence 45799999999999999999999 899999999864
No 243
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.80 E-value=0.0053 Score=68.94 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=28.9
Q ss_pred EEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 254 AILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 254 vVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
+|||||.+|+++|++|++ .|.+|+|+||...
T Consensus 1 vIIGgG~aGl~aAi~aa~--~G~~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR--EGLSVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHh--cCCcEEEEecCcc
Confidence 699999999999999999 8999999999763
No 244
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.77 E-value=0.006 Score=74.57 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=32.3
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
....+|+|||||.+|+++|++|++ .|++|+|+|+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccc
Confidence 356789999999999999999999 99999999985
No 245
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.76 E-value=0.0066 Score=74.88 Aligned_cols=35 Identities=43% Similarity=0.529 Sum_probs=32.3
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+|+|||||.+|+++|++|++ .|++|+|+|+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~ 572 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREE 572 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEeccc
Confidence 45689999999999999999999 899999999875
No 246
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.75 E-value=0.0073 Score=70.34 Aligned_cols=41 Identities=32% Similarity=0.472 Sum_probs=31.9
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 300 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p 300 (728)
..|+|||||++||++|.+|.+ .|++|+++||.. .-||+|+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e--~g~~~~~fE~~~-------~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE--EGLEVTCFEKSD-------DIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH--TT-EEEEEESSS-------SSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHH--CCCCCeEEecCC-------CCCccCee
Confidence 369999999999999999999 899999999863 34677764
No 247
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.74 E-value=0.0073 Score=73.37 Aligned_cols=35 Identities=40% Similarity=0.544 Sum_probs=32.2
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+|+|||||.+|+++|++|++ .|++|+|+|+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALH 464 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence 45699999999999999999999 899999999853
No 248
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.73 E-value=0.008 Score=75.13 Aligned_cols=36 Identities=28% Similarity=0.486 Sum_probs=33.2
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
..+||+|||||.+|+++|++|++ +|++|+|+|++..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~ 197 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPE 197 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCC
Confidence 46799999999999999999999 9999999999753
No 249
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.72 E-value=0.0059 Score=74.29 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=31.0
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
+|+|||||++||++|+.|++..+|++|+|+|+...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 79999999999999999999333899999999753
No 250
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=95.71 E-value=0.0075 Score=68.87 Aligned_cols=35 Identities=40% Similarity=0.606 Sum_probs=32.2
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+|+|||||.+|+++|+.|++ .|++|+|+|+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~ 173 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARD 173 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCC
Confidence 45689999999999999999999 899999999874
No 251
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.67 E-value=0.008 Score=75.04 Aligned_cols=35 Identities=40% Similarity=0.454 Sum_probs=32.2
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+|+|||||.+||++|++|++ .|++|+|+|+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCC
Confidence 35699999999999999999999 899999999864
No 252
>PLN02529 lysine-specific histone demethylase 1
Probab=95.64 E-value=0.0078 Score=72.36 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=32.4
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...||+|||||++|+++|..|++ .|++|+|+|+..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~--~g~~v~v~E~~~ 193 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLS--FGFKVVVLEGRN 193 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--cCCcEEEEecCc
Confidence 46799999999999999999999 999999999964
No 253
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=95.63 E-value=0.0085 Score=64.31 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=38.8
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc---ccccCCCCccccccC
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF---NMDTTSDGAAGLFEP 300 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~---~g~gAS~~agGii~p 300 (728)
..+||+|||||.+||-+|-+|+. +|.+|+|+|++. .+..+-..-+|++..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~--aG~~V~ildQEgeqnlGGQAfWSfGGLF~v 56 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELAD--AGKRVLILDQEGEQNLGGQAFWSFGGLFLV 56 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHh--cCceEEEEcccccccccceeeeecccEEEe
Confidence 46799999999999999999999 999999999974 232333333555544
No 254
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=95.63 E-value=0.0093 Score=69.44 Aligned_cols=46 Identities=17% Similarity=0.025 Sum_probs=36.8
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 300 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p 300 (728)
+||+|||+|.+|+++|+.|++ .|++|+|||++....+ .+-|++...
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~--~g~~v~~~e~~~~~~~--~~~g~~~~~ 46 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD--AGLKVAMVEIGAADSF--LKIGAHKKN 46 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH--CCCeEEEEeccCccCC--Ccccccccc
Confidence 599999999999999999999 8999999999864322 233555444
No 255
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.51 E-value=0.01 Score=70.92 Aligned_cols=35 Identities=46% Similarity=0.574 Sum_probs=32.2
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+|+|||||.+|+++|+.|++ .|++|+|+|+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~ 226 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANE 226 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCC
Confidence 35689999999999999999999 899999999874
No 256
>PRK14727 putative mercuric reductase; Provisional
Probab=95.47 E-value=0.0093 Score=68.57 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=34.1
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc-ccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK-FNM 287 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~-~~g 287 (728)
+.++|++|||||..|+++|+.|++ .|.+|+|||++ .+|
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~--~g~~v~~ie~~~~~G 52 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAE--HGARVTIIEGADVIG 52 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCcce
Confidence 457899999999999999999999 89999999996 444
No 257
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=95.37 E-value=0.011 Score=70.61 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=32.0
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.+|||+|||||..|..+|+.+++ .|.+|+|||++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~--~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAME--RGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCC
Confidence 37899999999999999999999 99999999975
No 258
>PLN02546 glutathione reductase
Probab=95.36 E-value=0.011 Score=69.32 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=31.4
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeec
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk 283 (728)
.+|||+|||||..|..+|..|++ .|.+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASN--FGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCeEEEEec
Confidence 46899999999999999999999 9999999997
No 259
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=95.34 E-value=0.0099 Score=66.27 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=25.6
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEe
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVI 281 (728)
||+|||||.+|+.+|+.+|+ .|.+|+++
T Consensus 1 DViVVGgG~AG~eAA~aaAr--~G~~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR--MGAKVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TT--EEEE
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEE
Confidence 89999999999999999999 99999999
No 260
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.33 E-value=0.015 Score=66.75 Aligned_cols=35 Identities=34% Similarity=0.478 Sum_probs=32.3
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+|+|||||.+|+++|+.|++ .|++|+|+|+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence 45799999999999999999999 899999999874
No 261
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.31 E-value=0.015 Score=69.35 Aligned_cols=35 Identities=37% Similarity=0.463 Sum_probs=32.5
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+|+|||||.+||++|+.|++ .|++|+|+|+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCC
Confidence 46789999999999999999999 899999999875
No 262
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.27 E-value=0.015 Score=63.91 Aligned_cols=35 Identities=37% Similarity=0.383 Sum_probs=32.1
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+|+|||||.+|+++|..|++ .|++|+|+|+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~ 51 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLP 51 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCC
Confidence 35689999999999999999999 899999999964
No 263
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.22 E-value=0.014 Score=66.67 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=34.5
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc-ccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK-FNM 287 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~-~~g 287 (728)
+.+||++|||||-.|.++|..+++ .|.+|+|+|+. ..|
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~--~G~kvalvE~~~~lG 40 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQ--LGLKVALVEKGERLG 40 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHh--CCCCEEEEeecCCcC
Confidence 468999999999999999999999 89999999998 444
No 264
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=95.18 E-value=0.015 Score=67.08 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=31.8
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+||++|||||..|+.+|+.+++ .|.+|+|||+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~--~G~~v~lie~~~ 35 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD--YGAKVMLLDFVT 35 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccC
Confidence 4799999999999999999999 899999999854
No 265
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.16 E-value=0.014 Score=66.79 Aligned_cols=36 Identities=33% Similarity=0.388 Sum_probs=28.1
Q ss_pred eEEEeecceechhhHHHhhhhCCC-CcEEEeeccccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNM 287 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~~g 287 (728)
||+|||||.+|..+|..|++..+. ++|+|||+...+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 799999999999999999995433 899999998644
No 266
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=95.13 E-value=0.015 Score=66.40 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=31.7
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g 287 (728)
+|+|||||..|+++|..|++ .|.+|+|||++..+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~--~g~~V~lie~~~~G 35 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ--NGKNVTLIDEADLG 35 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh--CCCcEEEEECCccc
Confidence 79999999999999999999 89999999997644
No 267
>PLN03000 amine oxidase
Probab=95.07 E-value=0.016 Score=70.50 Aligned_cols=35 Identities=40% Similarity=0.559 Sum_probs=32.3
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+|+|||||++||++|+.|++ .|++|+|+|+..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~--~G~~V~VlE~~~ 217 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMR--FGFKVTVLEGRK 217 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHH--CCCcEEEEEccC
Confidence 35799999999999999999999 899999999964
No 268
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=95.05 E-value=0.015 Score=67.03 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=31.5
Q ss_pred CcceEEEeecceechhhHHHhhhhCC-CCcEEEeecc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADK 284 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~-G~~VtVIEk~ 284 (728)
.+|||+|||||..|..+|..+++ . |.+|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~--~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAAT--LYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHH--hcCCEEEEEecc
Confidence 36899999999999999999999 7 8999999984
No 269
>KOG0685|consensus
Probab=95.03 E-value=0.019 Score=64.45 Aligned_cols=36 Identities=36% Similarity=0.538 Sum_probs=30.5
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.....|||||||++||++|-+|.++ ...+|+|+|..
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~-gf~~~~IlEa~ 54 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLEN-GFIDVLILEAS 54 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHh-CCceEEEEEec
Confidence 3456899999999999999999973 55689999975
No 270
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=94.97 E-value=0.015 Score=67.82 Aligned_cols=32 Identities=25% Similarity=0.202 Sum_probs=30.0
Q ss_pred eEEEeecceechhhHHHhhhhCCC-CcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~ 285 (728)
|+||||+|.+|+.+|..|++ .+ ++|.|||++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~--~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSE--DVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhcc--CCCCeEEEEecCC
Confidence 79999999999999999999 66 7999999985
No 271
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=94.95 E-value=0.017 Score=66.54 Aligned_cols=34 Identities=38% Similarity=0.527 Sum_probs=31.7
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+|+|||||.+|+++|++|++ .|++|+|+|+..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~ 176 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNR--AGHTVTVFERED 176 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCC
Confidence 4699999999999999999999 899999999875
No 272
>KOG2415|consensus
Probab=94.82 E-value=0.023 Score=62.66 Aligned_cols=52 Identities=27% Similarity=0.392 Sum_probs=40.1
Q ss_pred cCcceEEEeecceechhhHHHhhhh----CCCCcEEEeecccccccCCCCccccccC
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRR----FPNCDVTVIADKFNMDTTSDGAAGLFEP 300 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~----~~G~~VtVIEk~~~g~gAS~~agGii~p 300 (728)
...+||+|||||-+|||+|..|.+. ....+|+|+||.... |.-..+|+.+.|
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~-GghtlSGaviep 129 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEV-GGHTLSGAVIEP 129 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeecccc-CCceecceeecc
Confidence 3578999999999999999998763 256899999997532 233456777777
No 273
>PTZ00188 adrenodoxin reductase; Provisional
Probab=94.75 E-value=0.024 Score=64.95 Aligned_cols=37 Identities=27% Similarity=0.312 Sum_probs=31.7
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g 287 (728)
...|+|||||.+|+.+|.+|+++ .|++|+|+|+...+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~p 75 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNP 75 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCC
Confidence 45799999999999999987643 69999999998644
No 274
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.71 E-value=0.022 Score=64.47 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=30.2
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|+|||||.+|+++|..|++..++.+|+|||++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 6999999999999999999843467999999975
No 275
>KOG4254|consensus
Probab=94.70 E-value=0.026 Score=63.00 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=33.7
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+..+|++|||+|..||++|-+|++ -|.+|+|+|++.
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r--~g~~V~vlerrh 47 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLAR--YGQSVAVLERRH 47 (561)
T ss_pred CcccceEEecCCccchhHHHHHHh--cCcceEEEEEee
Confidence 568999999999999999999999 899999999973
No 276
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.67 E-value=0.025 Score=66.42 Aligned_cols=35 Identities=34% Similarity=0.523 Sum_probs=32.0
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...+|+|||||.+||++|+.|++ .|++|+|+|+..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~ 170 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGP 170 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCC
Confidence 35689999999999999999999 899999999875
No 277
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.57 E-value=0.025 Score=64.23 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=30.9
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|||||||.+|+++|..|++..++++|+|||++.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 7999999999999999999854688999999974
No 278
>KOG4716|consensus
Probab=94.54 E-value=0.037 Score=59.74 Aligned_cols=51 Identities=22% Similarity=0.184 Sum_probs=43.7
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-ccccCCCCccccccC
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDTTSDGAAGLFEP 300 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~gAS~~agGii~p 300 (728)
.-.||.+|||||-.||++|-+.+. -|.+|.++|--. .+.|+|+.-||-...
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~--~G~kV~~lDfV~PtP~GtsWGlGGTCvN 68 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAAD--LGAKVACLDFVKPTPQGTSWGLGGTCVN 68 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHh--cCCcEEEEeecccCCCCCccccCceeee
Confidence 457999999999999999999999 899999999854 467888877776654
No 279
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=94.45 E-value=0.027 Score=54.77 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=28.6
Q ss_pred EEeecceechhhHHHhhhhC---CCCcEEEeecccc
Q psy16975 254 AILGAGIIGLSTALELQRRF---PNCDVTVIADKFN 286 (728)
Q Consensus 254 vVIGAGIiGLStA~~La~~~---~G~~VtVIEk~~~ 286 (728)
+|||+|..|++++.+|.++. ...+|+|+|+...
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999962 4689999999654
No 280
>PRK13984 putative oxidoreductase; Provisional
Probab=94.37 E-value=0.035 Score=65.79 Aligned_cols=37 Identities=41% Similarity=0.450 Sum_probs=33.2
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
....+|+|||+|.+|+++|+.|++ .|++|+|+|+...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~ 317 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSK 317 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCC
Confidence 345689999999999999999999 8999999998753
No 281
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=94.34 E-value=0.03 Score=64.15 Aligned_cols=33 Identities=33% Similarity=0.404 Sum_probs=31.1
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeecccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~ 286 (728)
||+|||||..|+++|..|++ .|.+|+|+|++..
T Consensus 3 ~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~~~ 35 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQ--LGADVTVIERDGL 35 (466)
T ss_pred cEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCC
Confidence 89999999999999999999 8999999999754
No 282
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.24 E-value=0.032 Score=62.49 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=30.1
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+.+|+|||||.+|+++|..|++.....+|+|++++.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~ 38 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER 38 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 458999999999999999999933334899999874
No 283
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=94.22 E-value=0.08 Score=57.36 Aligned_cols=70 Identities=23% Similarity=0.425 Sum_probs=62.8
Q ss_pred chhHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeecccccccccccc
Q psy16975 7 FGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTVTTE 77 (728)
Q Consensus 7 ~~r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~~~~ 77 (728)
.++++++.++..+-+|.|...+.|+|.+++.+.++... .=.+.+|||....-|+..+|+|+..+.+..+.
T Consensus 228 ~~~~~~~~l~~~~~~G~~~~~~~v~~~~~~~~~i~~~~-~~~~~~DGE~~~~~p~~i~~~p~al~vl~p~~ 297 (301)
T COG1597 228 QSLLELLALLPDLLRGKHLENPDVEYLRAKKLEITSDP-PIPVNLDGEYLGKTPVTIEVLPGALRVLVPPD 297 (301)
T ss_pred ccHHHHHHHHHHHhCCCccCCCCeEEEeccEEEEEcCC-CceEeeCCccCCCCcEEEEEecccEEEEcCCC
Confidence 47999999999999999999999999999999999984 45789999999999999999999996655544
No 284
>PRK09897 hypothetical protein; Provisional
Probab=94.19 E-value=0.036 Score=64.62 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=32.1
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc-cccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-NMDT 289 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~-~g~g 289 (728)
.+|+|||||..|+++|.+|++.....+|+|+|+.. +|.|
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G 41 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVG 41 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcc
Confidence 37999999999999999999843457999999954 5544
No 285
>PLN02976 amine oxidase
Probab=94.09 E-value=0.036 Score=70.04 Aligned_cols=35 Identities=37% Similarity=0.575 Sum_probs=32.0
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..++|+|||||++|+++|++|++ .|++|+|||+..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~--~G~~V~VlEa~~ 726 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQR--QGFSVTVLEARS 726 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHH--CCCcEEEEeecc
Confidence 35789999999999999999999 899999999864
No 286
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.08 E-value=0.035 Score=55.46 Aligned_cols=32 Identities=34% Similarity=0.492 Sum_probs=27.9
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.|.|||||.+|..+|..++. .|++|+++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECCh
Confidence 48999999999999999999 899999999864
No 287
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=93.99 E-value=0.039 Score=62.47 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=31.6
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+.+.+|||||||.+|+++|..|.+ .+++|+|||+..
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~--~~~~ItlI~~~~ 43 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDP--KKYNITVISPRN 43 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCc--CCCeEEEEcCCC
Confidence 345689999999999999999977 678999999864
No 288
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=93.94 E-value=0.041 Score=61.05 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=31.1
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|||||||.+|+++|..|.+..+..+|+||+++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 48999999999999999998855678999999875
No 289
>PLN02785 Protein HOTHEAD
Probab=93.85 E-value=0.038 Score=65.27 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=31.8
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...||+||||||.+|+..|..|++ . .+|+|||++.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~-~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ--N-FSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc--C-CcEEEEecCC
Confidence 346999999999999999999999 4 7999999985
No 290
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.68 E-value=0.05 Score=54.72 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=26.7
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+.|.|||.|.+||.+|..|++ .|++|+.+|.+.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~--~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE--KGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH--TTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHh--CCCEEEEEeCCh
Confidence 369999999999999999999 999999999874
No 291
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=93.66 E-value=0.12 Score=55.69 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=51.9
Q ss_pred hHhHHHHHhhcCCCcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccc
Q psy16975 9 VWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV 74 (728)
Q Consensus 9 r~~~l~~~~~~~~g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~ 74 (728)
+++++.+|..+-+|.| .+++.+.+++.++|+... .-.+.||||.+...|++.+|.|+..+.++
T Consensus 224 ~~~~~~~l~~~~~g~~--~~~~~~~~~~~i~i~~~~-~~~~~vDGE~~~~~p~~i~v~p~al~v~~ 286 (293)
T TIGR03702 224 PELLPATLSTLFGGDK--NPEFVRARLPWLEIEAPQ-PLTFNLDGEPLSGRHFRIEVLPGALRCHL 286 (293)
T ss_pred HHHHHHHHHHHhcCCC--CCcEEEEEcCEEEEEeCC-CcEEEECCCcCCCceEEEEEEcCeEEEEc
Confidence 5677778777777864 468889999999999754 46789999999999999999999996665
No 292
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.57 E-value=0.051 Score=52.00 Aligned_cols=31 Identities=35% Similarity=0.505 Sum_probs=29.3
Q ss_pred EEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 253 VvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
|+|||+|.+|+..|+.|++ .|++|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc
Confidence 6899999999999999999 999999999875
No 293
>KOG1238|consensus
Probab=93.30 E-value=0.063 Score=62.64 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=35.5
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g 287 (728)
....||.+|||||-+||..|-.|++. +.++|.|||++...
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCCC
Confidence 45689999999999999999999996 78999999998543
No 294
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.23 E-value=0.069 Score=57.93 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=31.8
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..++|+|||+|.+|.+.|..|++ .|++|+++.++.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~--~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLAR--AGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHH--CCCeEEEEEeCC
Confidence 34579999999999999999999 899999999964
No 295
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.21 E-value=0.071 Score=57.25 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=30.8
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..|.|||+|.+|...|..|+. .|++|+++|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 379999999999999999999 999999999874
No 296
>KOG1800|consensus
Probab=93.13 E-value=0.085 Score=57.92 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=34.0
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g 287 (728)
...|+|||+|-+|.-||++|.+++.+..|+|+|+...+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 45899999999999999999996678999999998655
No 297
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.07 E-value=0.082 Score=57.05 Aligned_cols=34 Identities=18% Similarity=0.395 Sum_probs=30.9
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...|.|||||.+|.-+||.|++ +|..|.+.|-..
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~--~Gv~V~L~EMRp 36 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAK--RGVPVILYEMRP 36 (439)
T ss_pred CCceEEEcccccccHHHHHHHH--cCCcEEEEEccc
Confidence 4469999999999999999999 999999999753
No 298
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.92 E-value=0.07 Score=57.79 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=30.3
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|.|||+|.+|.+.|..|++ .|++|+++|+..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~--~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFAR--AGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHH--CCCeeEEEeCCH
Confidence 69999999999999999999 899999999874
No 299
>PRK07846 mycothione reductase; Reviewed
Probab=92.86 E-value=0.072 Score=60.85 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=29.0
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMD 288 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~ 288 (728)
+||++|||||..|.++|.. . .|.+|+|||++..|.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~--~G~~V~lie~~~~GG 35 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--F--ADKRIAIVEKGTFGG 35 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--H--CCCeEEEEeCCCCCC
Confidence 3799999999999988754 4 589999999976543
No 300
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=92.81 E-value=0.073 Score=60.88 Aligned_cols=53 Identities=32% Similarity=0.396 Sum_probs=40.6
Q ss_pred cCCceeeEEeecCCCCCCCccccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 226 NGDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 226 g~~~w~~~~~~~~~~~~~~~~~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+..+|...|.+..+. . ......|+|||||-+||++|+.|++ .|++|+|+|+..
T Consensus 104 ~d~~~~~g~i~~~~~-~----~~tg~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~ 156 (457)
T COG0493 104 GDKADREGWIPGELP-G----SRTGKKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVA 156 (457)
T ss_pred hhHHHHhCCCCCCCC-C----CCCCCEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcC
Confidence 345566666665522 1 1233689999999999999999999 999999999864
No 301
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.63 E-value=0.093 Score=56.28 Aligned_cols=34 Identities=26% Similarity=0.254 Sum_probs=31.1
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...|.|||+|.+|.+.|..|++ .|++|+++|+..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence 4579999999999999999999 899999999863
No 302
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=92.52 E-value=0.085 Score=60.28 Aligned_cols=34 Identities=9% Similarity=0.071 Sum_probs=28.2
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g 287 (728)
+||++|||+|..|..+| ++. .|.+|+|||++..|
T Consensus 2 ~yD~vvIG~G~~g~~aa--~~~--~g~~V~lie~~~~G 35 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPD--PRF--ADKRIAIVEKGTFG 35 (452)
T ss_pred CcCEEEECCCHHHHHHH--HHH--CCCeEEEEeCCCCC
Confidence 58999999999998875 344 68999999997654
No 303
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.25 E-value=0.09 Score=51.22 Aligned_cols=32 Identities=31% Similarity=0.378 Sum_probs=29.9
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|+|||||-.|.+.|..|++ .|++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--NGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--CTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHH--cCCEEEEEeccH
Confidence 48999999999999999999 899999999864
No 304
>KOG2404|consensus
Probab=92.02 E-value=0.14 Score=55.03 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=31.9
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCC
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTS 291 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS 291 (728)
.|||||+|.+|||++..|.. .|-.|+++|+...-.|.|
T Consensus 11 pvvVIGgGLAGLsasn~iin--~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIIN--KGGIVILLEKAGSIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHh--cCCeEEEEeccCCcCCcc
Confidence 69999999999999999998 666799999976444443
No 305
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.82 E-value=0.13 Score=55.69 Aligned_cols=32 Identities=34% Similarity=0.368 Sum_probs=30.2
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
++|+|||+|.+|...|+.|++ .|.+|++++|.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~--~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLAR--AGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence 479999999999999999999 89999999995
No 306
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.76 E-value=0.14 Score=55.98 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=30.6
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..|.|||+|++|...|..++. .|++|+++|...
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALA--HGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence 469999999999999999999 999999999864
No 307
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=91.75 E-value=0.1 Score=57.45 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=29.1
Q ss_pred eEEEeecceechhhHHHhhhh-CCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRR-FPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~-~~G~~VtVIEk~~ 285 (728)
+|||||||.+|+++|..|.++ .++.+|+|||++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~ 35 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSS 35 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCC
Confidence 489999999999999999752 2578999999875
No 308
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=91.48 E-value=0.15 Score=58.64 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=31.9
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+..+||+|||||-+|+-+|+..++ -|.++.++--..
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaAR--mG~ktlLlT~~~ 37 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAAR--MGAKTLLLTLNL 37 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhc--cCCeEEEEEcCC
Confidence 345999999999999999999999 899999987653
No 309
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.45 E-value=0.15 Score=55.85 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=30.4
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|.|||+|.+|.+.|..|++ .|++|+++++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~--~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAA--AGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHh--cCCcEEEEecHH
Confidence 369999999999999999999 899999999853
No 310
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.44 E-value=0.15 Score=54.60 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=30.3
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..|+|||+|.+|.+.|..|++ .|++|+++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCH
Confidence 369999999999999999999 899999999863
No 311
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.21 E-value=0.15 Score=54.58 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=30.0
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.|+|||+|.+|.+.|..|++ .|++|+++|++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~--~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAV--SGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHh--CCCcEEEEeCCH
Confidence 59999999999999999999 899999999864
No 312
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=90.73 E-value=0.18 Score=51.39 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=32.2
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
..+|+|||+|.+|+.+|..|++ .|. +|+|+|.+.+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~--~Gvg~i~lvD~D~ve 57 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLAR--AGIGKLILVDFDVVE 57 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHH--cCCCEEEEECCCEEc
Confidence 4579999999999999999999 898 69999998643
No 313
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.50 E-value=0.21 Score=53.59 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=30.4
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..|.|||+|.+|.+.|..|++ .|++|+++|+..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~--~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAA--AGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCH
Confidence 469999999999999999999 899999999864
No 314
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=90.39 E-value=0.25 Score=56.47 Aligned_cols=40 Identities=25% Similarity=0.396 Sum_probs=33.5
Q ss_pred ceEEEeecceechhhHHHhhhh--CCCCcEEEeecccccccC
Q psy16975 251 HKVAILGAGIIGLSTALELQRR--FPNCDVTVIADKFNMDTT 290 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~--~~G~~VtVIEk~~~g~gA 290 (728)
.++=|||+||++|++|.+|-+. .+|-+|+|+|+....+|+
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs 44 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS 44 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence 4677999999999999999985 378899999998754443
No 315
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=90.37 E-value=0.22 Score=51.59 Aligned_cols=32 Identities=38% Similarity=0.517 Sum_probs=30.5
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+++|||+|-.|.+.|-.|.+ .|++|+++|++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~--~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSE--EGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHh--CCCceEEEEcCH
Confidence 69999999999999999999 899999999975
No 316
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.35 E-value=0.22 Score=53.08 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=29.9
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|.|||+|.+|.++|..|++ .|++|+++|.+.
T Consensus 5 kI~VIG~G~mG~~ia~~la~--~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAV--AGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHH--CCCceEEEeCCH
Confidence 69999999999999999999 899999999763
No 317
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=90.27 E-value=0.21 Score=56.06 Aligned_cols=36 Identities=33% Similarity=0.680 Sum_probs=30.9
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+..|||||||..|+.+|..|.+..++.+|++||+..
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~ 38 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRD 38 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCC
Confidence 457999999999999999999941258899999974
No 318
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.13 E-value=0.22 Score=53.38 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=28.8
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeec
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk 283 (728)
+|+|||+|.+|++.|..|++ .|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~--~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLE--AGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHH--CCCceEEEec
Confidence 59999999999999999999 8999999998
No 319
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=89.98 E-value=0.22 Score=54.95 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=31.8
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+++|||+|.+|+-+|..|++ +|++|+++|+..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~--~G~~v~l~e~~~ 169 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAK--RGKKVTLIEAAD 169 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEccc
Confidence 3689999999999999999999 999999999975
No 320
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.90 E-value=0.24 Score=56.21 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=29.6
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCc-EEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~~ 285 (728)
++|+|||+|..|+.+|.+|.+..+.-. |+|+|+..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~ 37 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRP 37 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccc
Confidence 589999999999999999999643333 99999975
No 321
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.63 E-value=0.27 Score=53.59 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=30.5
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+.|.|||+|.+|...|..|++ .|++|+++++..
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~--~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAAS--KGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence 379999999999999999999 899999999953
No 322
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=89.58 E-value=0.26 Score=52.69 Aligned_cols=31 Identities=45% Similarity=0.621 Sum_probs=29.3
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
+|+|||+|-+|...|..|++ .|++|++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~--~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQ--AGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence 59999999999999999999 89999999984
No 323
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.57 E-value=0.25 Score=54.79 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=30.5
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
++|.|||.|.+||++|..|++ -|++|+.+|.+.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~--~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAE--LGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHH--cCCeEEEEeCCH
Confidence 369999999999999999999 899999999864
No 324
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.49 E-value=0.29 Score=52.92 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=30.2
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|.|||+|.+|.+.|..|++ .|++|+++|+..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~--~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFAR--KGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence 469999999999999999999 899999999753
No 325
>PRK12361 hypothetical protein; Provisional
Probab=89.46 E-value=0.4 Score=56.27 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=51.2
Q ss_pred hHhHHHHHhhcCC--CcccccCceeeEEcceeEEeecCCCcEEEEcceEeeecccceeeccccccccc
Q psy16975 9 VWLIEEFLIGLAS--GSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPGLIERTV 74 (728)
Q Consensus 9 r~~~l~~~~~~~~--g~h~~~~~v~~~~v~a~rl~p~~~~g~i~vDGE~~~~~~~q~ev~~~l~~~~~ 74 (728)
+++++.++..+-. +.|...++|+|.+++.++|+... .=.+.||||.+...|+..+|.|+-.+.++
T Consensus 474 ~~~l~~l~~~~~~g~~~~~~~~~v~~~~~k~v~I~~~~-~~~~~iDGE~~~~~p~~i~v~p~al~vlv 540 (547)
T PRK12361 474 GEQLLSLAELALSGLGKEPEANKVHHAHAKKVTISSQK-PIKYVIDGELFEDEDLTIEVQPASLKVFV 540 (547)
T ss_pred hHHHHHHHHHHHHHhcccCCCCceEEEEeeEEEEEeCC-ceEEEECCccCCceEEEEEEecCceEEEe
Confidence 3456655433333 46788899999999999999653 45778999999999999999999996666
No 326
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.45 E-value=0.27 Score=56.55 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=29.6
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.+|+|||+|.+|+++|..|++ .|++|+++|+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~ 48 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLE--LGARVTVVDDG 48 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 379999999999999999999 89999999965
No 327
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.38 E-value=0.3 Score=55.30 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=30.7
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..|.|||.|.+|+++|..|++ .|++|+++|++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~--~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFAS--RQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHh--CCCEEEEEeCCH
Confidence 479999999999999999999 899999999864
No 328
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.26 E-value=0.3 Score=52.37 Aligned_cols=33 Identities=24% Similarity=0.479 Sum_probs=30.4
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..|.|||+|.+|.+.|..|++ .|++|+++|+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~--~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFAR--TGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHh--cCCeEEEEeCCH
Confidence 369999999999999999999 899999999864
No 329
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.08 E-value=0.3 Score=52.98 Aligned_cols=32 Identities=28% Similarity=0.594 Sum_probs=28.6
Q ss_pred ceEEEeecceechhhHHHhhhhCCCC-cEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~ 284 (728)
..|.|||+|.+|+++|+.|+. .|+ +|+++|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~--~g~~~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE--KELADLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCC
Confidence 369999999999999999999 666 89999983
No 330
>KOG2755|consensus
Probab=88.66 E-value=0.35 Score=50.87 Aligned_cols=32 Identities=28% Similarity=0.536 Sum_probs=28.5
Q ss_pred EEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 253 VvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.+||||||+|.|+|-.|+...|..+|.++-..
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitas 33 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITAS 33 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEecc
Confidence 68999999999999999997788899988654
No 331
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=88.65 E-value=0.31 Score=54.56 Aligned_cols=33 Identities=42% Similarity=0.588 Sum_probs=30.5
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|+|||+|.+|+-+|..|++ .|.+|+|+++..
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~ 177 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQ--RRCKVTVIELAA 177 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence 479999999999999999999 899999999864
No 332
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=88.60 E-value=0.35 Score=56.00 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=30.1
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.|.|||+|.+|.+.|..|++ .|++|+|+|+..
T Consensus 6 kIavIG~G~MG~~iA~~la~--~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLL--AGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence 69999999999999999999 899999999853
No 333
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.54 E-value=0.34 Score=52.57 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=29.0
Q ss_pred eEEEeecceechhhHHHhhhhCCC--CcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPN--CDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G--~~VtVIEk~~ 285 (728)
+|+|||+|.+|+++|+.|+. .| .+|.++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~--~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL--RGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH--cCCCCEEEEEECCc
Confidence 69999999999999999999 77 5899999864
No 334
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.28 E-value=0.39 Score=54.18 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=30.0
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|.|||.|.+|+.+|..|++ .|++|+++|++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~--~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLAD--LGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHh--cCCeEEEEECCH
Confidence 59999999999999999999 899999999864
No 335
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.19 E-value=0.37 Score=53.14 Aligned_cols=36 Identities=31% Similarity=0.506 Sum_probs=32.4
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
...|+|||+|-+|+.+|..|++ .|. +++|+|.+.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~--aGvg~i~lvD~D~Ve 60 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVR--AGVGKVTIVDRDYVE 60 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCccC
Confidence 4579999999999999999999 888 89999998643
No 336
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=87.74 E-value=0.39 Score=54.67 Aligned_cols=39 Identities=28% Similarity=0.268 Sum_probs=29.5
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g 287 (728)
|+.++||+|+|-|+.-+-.|-.|++ .|.+|..+|++...
T Consensus 1 m~~~yDviI~GTGl~esila~als~--~GkkVLhiD~n~yY 39 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSR--SGKKVLHIDRNDYY 39 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHH--TT--EEEE-SSSSS
T ss_pred CCccceEEEECCCcHHHHHHHHHHh--cCCEEEecCCCCCc
Confidence 5678999999999999999999999 99999999998643
No 337
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=87.74 E-value=0.41 Score=59.07 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=30.5
Q ss_pred cceEEEeecceechhhHHHhhhhC--CCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~--~G~~VtVIEk~~ 285 (728)
..+|||||+|.+|+++|..|.+.. .+++|+||+++.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~ 40 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEP 40 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCC
Confidence 348999999999999999998632 468999999875
No 338
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=87.70 E-value=0.48 Score=44.75 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=31.3
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeecccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNMD 288 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g~ 288 (728)
+..|+|||+|-+|+.+|..|++ .|. +++|+|.+....
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~--~Gv~~i~lvD~d~v~~ 39 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLAR--SGVGKITLVDDDIVEP 39 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHH--HTTSEEEEEESSBB-G
T ss_pred CCEEEEECcCHHHHHHHHHHHH--hCCCceeecCCcceee
Confidence 3579999999999999999999 777 799999987543
No 339
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.54 E-value=0.38 Score=54.87 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=29.8
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.|+|||.|.+|+++|+.|++ .|++|++.|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~--~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA--QGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH--CCCEEEEECCCC
Confidence 58999999999999999999 999999999864
No 340
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=87.44 E-value=0.41 Score=54.95 Aligned_cols=33 Identities=33% Similarity=0.454 Sum_probs=30.7
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|+|||||.+|+-+|..|++ .|.+|+|+++..
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~--~g~~Vtli~~~~ 213 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLAD--FGVEVTVVEAAD 213 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCeEEEEEecC
Confidence 489999999999999999999 899999999864
No 341
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=87.37 E-value=0.42 Score=54.25 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=30.6
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|+|||||.+|+..|..|++ .|.+|+|+++..
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~--~g~~Vtli~~~~ 190 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNK--LGSKVTVLDAAS 190 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence 479999999999999999999 899999999864
No 342
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=87.20 E-value=0.43 Score=52.94 Aligned_cols=34 Identities=29% Similarity=0.561 Sum_probs=30.8
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+|+|||||.+|+-+|..|++ .|.+|+++++..
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~--~g~~Vtlv~~~~ 174 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCR--AGKAVTLVDNAA 174 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHh--cCCeEEEEecCC
Confidence 3479999999999999999999 899999999854
No 343
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=87.09 E-value=0.49 Score=55.04 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=30.8
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..|.|||+|.+|..+|..|++ .|++|+++|+..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~--aG~~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQ--AGHTVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence 469999999999999999999 899999999874
No 344
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=87.04 E-value=0.57 Score=50.80 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=30.3
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
..|.|||||.+|..+|+.++. .|++|+++|..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~--~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFAL--AGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhh--cCCceEEEeCC
Confidence 479999999999999999999 89999999987
No 345
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.75 E-value=0.5 Score=46.95 Aligned_cols=34 Identities=29% Similarity=0.372 Sum_probs=30.2
Q ss_pred eEEEeecceechhhHHHhhhhCCCCc-EEEeeccccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCD-VTVIADKFNM 287 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~~~g 287 (728)
.|+|||+|.+|..+|..|++ .|.. ++|+|.+...
T Consensus 1 ~VlViG~GglGs~ia~~La~--~Gvg~i~lvD~D~v~ 35 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLAR--SGVGNLKLVDFDVVE 35 (174)
T ss_pred CEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCCEEc
Confidence 48999999999999999999 8884 9999998643
No 346
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.40 E-value=0.52 Score=51.33 Aligned_cols=32 Identities=31% Similarity=0.517 Sum_probs=29.8
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|.|||||-+|.+.|..|++ .|++|++++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~--~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSS--KKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHH--CCCeEEEEecCH
Confidence 59999999999999999999 899999999853
No 347
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=86.34 E-value=0.5 Score=53.84 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=30.6
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|+|||||.+|+.+|..|++ .|.+|+|+++..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFAS--LGSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCC
Confidence 489999999999999999999 899999999864
No 348
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.31 E-value=0.57 Score=50.01 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=29.6
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|.|||.|.+|.+.|..|++ .|++|+++|+..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~--~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS--LGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH--CCCEEEEEECCH
Confidence 59999999999999999999 899999999863
No 349
>KOG1335|consensus
Probab=86.31 E-value=0.62 Score=51.47 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=32.9
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+|++|||+|.-|-.+|.+.++ .|++.+.+|+..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQ--lGlkTacvEkr~ 72 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQ--LGLKTACVEKRG 72 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHH--hcceeEEEeccC
Confidence 57999999999999999999999 999999999964
No 350
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=86.20 E-value=0.7 Score=43.82 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=30.0
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCc-EEEeecc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADK 284 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~ 284 (728)
...++|||||-+|-+++++|++ .|.+ |+|+.|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~--~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAA--LGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHH--TTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 4589999999999999999999 7877 9999885
No 351
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.18 E-value=0.58 Score=53.17 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=31.2
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...|+|||+|-+|+++|..|++ .|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCc
Confidence 4579999999999999999999 999999999864
No 352
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=86.15 E-value=0.57 Score=50.64 Aligned_cols=32 Identities=44% Similarity=0.546 Sum_probs=30.0
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|.|||+|.+|...|..|++ .|++|+++++..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~--~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR--NGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 69999999999999999999 899999999863
No 353
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=86.14 E-value=0.52 Score=54.71 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=30.6
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..|.|||+|.+|..+|..|++ .|++|+++|+..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~--aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAAS--AGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence 469999999999999999999 999999999864
No 354
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=86.12 E-value=0.56 Score=44.63 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=30.4
Q ss_pred eEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
.|+|||+|-+|+.+|..|++ .|. +++|+|.+...
T Consensus 1 ~VliiG~GglGs~ia~~L~~--~Gv~~i~ivD~d~v~ 35 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLAR--SGVGKITLIDFDTVE 35 (143)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCCcC
Confidence 48999999999999999999 887 79999998654
No 355
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.08 E-value=0.54 Score=56.99 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=30.8
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..|+|||||.+|..+|+.++. .|++|+++|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSAS--KGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHh--CCCeEEEEeCCH
Confidence 469999999999999999999 999999999874
No 356
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=86.05 E-value=0.54 Score=51.83 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=32.4
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
...|+|||+|-+|..+|..|++ .|. +++|+|.+.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~--aGvg~i~lvD~D~ve 60 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVR--AGIGKLTIADRDYVE 60 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCccc
Confidence 4579999999999999999999 887 89999998754
No 357
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.99 E-value=0.62 Score=50.44 Aligned_cols=34 Identities=29% Similarity=0.276 Sum_probs=31.1
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.++|.|||+|.+|.+.|..|++ .|++|+++++..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~--~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASA--NGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHH--CCCEEEEEeCCC
Confidence 3479999999999999999999 899999999864
No 358
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=85.91 E-value=0.56 Score=53.92 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=30.6
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+++|||||.+|+-.|..|++ .|.+|+||++..
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~--~G~~Vtlv~~~~ 207 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHR--LGSEVDVVEMFD 207 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCCEEEEecCC
Confidence 489999999999999999999 899999999864
No 359
>PRK07846 mycothione reductase; Reviewed
Probab=85.83 E-value=0.56 Score=53.61 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=30.6
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+++|||||.+|+-+|..|++ .|.+|+|+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~ 199 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSA--LGVRVTVVNRSG 199 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCC
Confidence 489999999999999999999 899999999863
No 360
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.71 E-value=0.6 Score=52.18 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=30.0
Q ss_pred ceEEEeecceechhhHHHhhhhCCC-CcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~ 285 (728)
.+|+|||||-+|.++|+.|++ ++ .+|+|.||..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~--~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQ--NGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHh--CCCceEEEEeCCH
Confidence 479999999999999999999 66 8999999973
No 361
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.51 E-value=0.62 Score=49.64 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=32.5
Q ss_pred CcceEEEeecceechhhHHHhhhhCCC-CcEEEeeccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNM 287 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~~g 287 (728)
....|+|||+|-+|+.+|..|++ .| -+++|+|.+...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar--~GVg~itLiD~D~V~ 66 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALAR--TGIGAITLIDMDDVC 66 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHH--cCCCEEEEEeCCEec
Confidence 35689999999999999999999 77 589999998644
No 362
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=85.50 E-value=0.59 Score=56.59 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=30.8
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..|.|||||.+|..+|+.++. .|++|+++|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~--~G~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSAS--KGTPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHh--CCCeEEEEeCCH
Confidence 469999999999999999999 899999999864
No 363
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=85.48 E-value=0.58 Score=53.50 Aligned_cols=32 Identities=28% Similarity=0.567 Sum_probs=30.2
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.+++|||+|.+|+-+|..|++ .|.+|+|+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~--~g~~Vtli~~~ 198 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFAR--LGSEVTILQRS 198 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC
Confidence 589999999999999999999 89999999986
No 364
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.30 E-value=0.67 Score=47.63 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=31.8
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCc-EEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~~~g 287 (728)
...|+|||+|.+|+.+|..|++ .|.. ++|+|.+...
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~--~Gvg~i~lvD~D~ve 64 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALAR--SGVGNLKLVDFDVVE 64 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--cCCCeEEEEeCCEec
Confidence 4579999999999999999999 7775 9999998654
No 365
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=85.28 E-value=0.71 Score=47.19 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=30.3
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..|+|||||-+|..-|..|.+ .|.+|+|++.+.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLK--AGAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCC
Confidence 479999999999999999999 899999998753
No 366
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=85.18 E-value=0.62 Score=53.21 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=30.2
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.+++|||||.+|+-.|..|++ .|.+|+|+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~ 198 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHG--LGSETHLVIRH 198 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEecC
Confidence 489999999999999999999 89999999986
No 367
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=85.06 E-value=0.69 Score=53.00 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=31.2
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+++|||||++|+=.|..+++ -|.+|||||+..
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~--LG~~VTiie~~~ 206 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAA--LGSKVTVVERGD 206 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCC
Confidence 3479999999999999999999 899999999964
No 368
>KOG3855|consensus
Probab=85.01 E-value=0.57 Score=52.22 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=32.2
Q ss_pred CcceEEEeecceechhhHHHhhhh--CCCCcEEEeecccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRR--FPNCDVTVIADKFN 286 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~--~~G~~VtVIEk~~~ 286 (728)
..+||+|+|||.+|++.|-.|..+ ...++|.++|....
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 478999999999999999999864 24689999998754
No 369
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=84.93 E-value=0.57 Score=57.44 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=28.6
Q ss_pred EEEeecceechhhHHHhhhhC-CCCcEEEeeccc
Q psy16975 253 VAILGAGIIGLSTALELQRRF-PNCDVTVIADKF 285 (728)
Q Consensus 253 VvVIGAGIiGLStA~~La~~~-~G~~VtVIEk~~ 285 (728)
|||||||.+|+++|.+|.+.. .+++|+||+++.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~ 34 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEP 34 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCC
Confidence 689999999999999998742 468999999875
No 370
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=84.90 E-value=0.77 Score=44.90 Aligned_cols=33 Identities=33% Similarity=0.447 Sum_probs=30.0
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
...|+|||||=+|..-|..|.+ .|.+|+||+++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~--~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKD--TGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCc
Confidence 4579999999999999999999 89999999754
No 371
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=84.86 E-value=0.69 Score=47.06 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=32.5
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
.+..|+|||+|-+|..+|..|++ .|. +++|+|.+...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~--~Gv~~i~lvD~d~ve 57 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAG--AGVGTIVIVDDDHVD 57 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH--cCCCeEEEecCCEEc
Confidence 35689999999999999999999 786 89999998653
No 372
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=84.77 E-value=0.67 Score=52.90 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=30.5
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+++|||||.+|+-+|..|++ .|.+|+|+++..
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~ 205 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYAS--LGAEVTIVEALP 205 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCC
Confidence 479999999999999999999 899999999863
No 373
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.72 E-value=0.53 Score=51.32 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=32.2
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+..|||+|||+|-+|.++|.+.++ .|.+.-|+...+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaAR--KGiRTGl~aerf 244 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAAR--KGIRTGLVAERF 244 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHh--hcchhhhhhhhh
Confidence 457999999999999999999999 899888887765
No 374
>PRK06370 mercuric reductase; Validated
Probab=84.71 E-value=0.68 Score=52.98 Aligned_cols=33 Identities=36% Similarity=0.504 Sum_probs=30.6
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|+|||+|.+|+-+|..|++ .|.+|+|+++..
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~ 204 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRR--FGSEVTVIERGP 204 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCC
Confidence 589999999999999999999 899999999864
No 375
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=84.67 E-value=0.69 Score=53.09 Aligned_cols=32 Identities=31% Similarity=0.524 Sum_probs=29.9
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.+|+|||+|.+|+-.|..|++ .|.+|+|+|+.
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~--~G~~Vtlie~~ 206 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRR--LGAQVTVVEYL 206 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCC
Confidence 479999999999999999999 89999999974
No 376
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=84.66 E-value=0.79 Score=46.75 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=30.1
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
...|+|||||=+|...|..|.+ .|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLK--YGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcCC
Confidence 4579999999999999999999 89999999865
No 377
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=84.39 E-value=0.76 Score=52.95 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=29.3
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
++|+|||+|.+|+.+|..|++...|++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 36999999999999999999922258899999753
No 378
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=84.21 E-value=0.71 Score=56.11 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=30.7
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..|.|||||.+|..+|+.++. .|++|+++|...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~--~G~~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVD--KGLKTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHh--CCCcEEEecCCH
Confidence 469999999999999999999 899999999864
No 379
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=84.12 E-value=0.72 Score=52.75 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=30.3
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+++|||||.+|+-+|..|++ .|.+|+|+++..
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~ 203 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSR--LGTKVTIVEMAP 203 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence 479999999999999999999 899999999863
No 380
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.11 E-value=0.77 Score=55.60 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=30.1
Q ss_pred ceEEEeecceechhhHHHhh-hhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQ-RRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La-~~~~G~~VtVIEk~~ 285 (728)
..|.|||||.+|..+|+.++ . .|++|+++|...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~--~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATK--AGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHH--cCCeEEEEeCCH
Confidence 46999999999999999999 7 899999999864
No 381
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=84.07 E-value=0.77 Score=51.83 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=30.4
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|+|||+|.+|+..|..|++ .|.+|+++++..
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~ 170 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRE--RGKNVTLIHRSE 170 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECCc
Confidence 489999999999999999999 899999999864
No 382
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=84.01 E-value=0.76 Score=52.66 Aligned_cols=32 Identities=34% Similarity=0.487 Sum_probs=29.6
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.+|+|||+|.+|+-.|..|++ .|.+|+|+++.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~ 204 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKN--YGVDVTIVEFL 204 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHH--cCCeEEEEecC
Confidence 479999999999999999999 89999999864
No 383
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=83.97 E-value=0.91 Score=49.66 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=30.1
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~ 285 (728)
...|+|||||-+|.++|+.|+. +|+ +|.++|...
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~--~gl~~i~LvDi~~ 40 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL--KNLGDVVLFDIVK 40 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCCC
Confidence 4589999999999999999998 775 899999864
No 384
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=83.95 E-value=0.76 Score=52.24 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=30.5
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+++|||||.+|+-.|..|++ .|.+|+|+++..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~~ 181 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYE--RGLHPTLIHRSD 181 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCcEEEEeccc
Confidence 479999999999999999999 899999999864
No 385
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=83.94 E-value=0.8 Score=49.81 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=29.6
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.|.|+|+|.+|+-.|+.|++ .|.+|+++-|..
T Consensus 2 kI~IlGaGAvG~l~g~~L~~--~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAK--AGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHh--CCCeEEEEecHH
Confidence 69999999999999999999 888999998865
No 386
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=83.85 E-value=0.65 Score=50.81 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=22.3
Q ss_pred eechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 260 IIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 260 IiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
|+||++|++|++ .|++|+|+|+..
T Consensus 1 iaGL~aA~~L~~--~G~~v~vlEa~~ 24 (450)
T PF01593_consen 1 IAGLAAAYYLAK--AGYDVTVLEASD 24 (450)
T ss_dssp HHHHHHHHHHHH--TTTEEEEEESSS
T ss_pred ChHHHHHHHHHh--CCCCEEEEEcCC
Confidence 589999999999 899999999975
No 387
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=83.82 E-value=0.88 Score=41.07 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=30.8
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...|+|||+|-+|..-+..|.+ .|.+|+|+.+..
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~--~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLE--AGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCC--CTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEECCch
Confidence 4579999999999999999999 899999999885
No 388
>KOG1371|consensus
Probab=83.65 E-value=1.1 Score=48.74 Aligned_cols=31 Identities=32% Similarity=0.517 Sum_probs=28.1
Q ss_pred eEEEee-cceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 252 KVAILG-AGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 252 dVvVIG-AGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.|+|.| ||.+|..|+++|.+ +|++|+++|--
T Consensus 4 ~VLVtGgaGyiGsht~l~L~~--~gy~v~~vDNl 35 (343)
T KOG1371|consen 4 HVLVTGGAGYIGSHTVLALLK--RGYGVVIVDNL 35 (343)
T ss_pred EEEEecCCcceehHHHHHHHh--CCCcEEEEecc
Confidence 688887 59999999999999 99999999963
No 389
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=83.49 E-value=0.82 Score=52.14 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=31.1
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+|+|||+|.+|+-.|..|++ .|.+|+|+++..
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~--~g~~Vtli~~~~ 208 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAA--LGVKVTLINTRD 208 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence 3589999999999999999999 899999999864
No 390
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=83.26 E-value=0.85 Score=55.17 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=29.8
Q ss_pred ceEEEeecceechhhHHHhh-hhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQ-RRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La-~~~~G~~VtVIEk~~ 285 (728)
..|.|||||.+|..+|+.++ + .|++|+++|...
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~--~G~~V~l~d~~~ 338 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATK--AGIPVRIKDINP 338 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHH--cCCeEEEEeCCH
Confidence 46999999999999999998 6 799999999864
No 391
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=83.21 E-value=0.99 Score=44.90 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=28.5
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+|+|||+|..+.-+|+.|++ .|.+|+++-|..
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~--~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAK--AGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTT--TCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHh--hCCEEEEEecCC
Confidence 4689999999999999999999 789999998864
No 392
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=83.17 E-value=0.92 Score=50.96 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=27.3
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|.|||.|.+|+.+|..|+. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~---G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ---NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh---CCcEEEEECCH
Confidence 59999999999999977764 79999999864
No 393
>PRK04148 hypothetical protein; Provisional
Probab=82.99 E-value=1.2 Score=42.45 Aligned_cols=32 Identities=31% Similarity=0.365 Sum_probs=29.4
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+++||.| .|.+.|..|++ .|++|+.+|-+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~--~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKE--SGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHH--CCCEEEEEECCH
Confidence 469999999 99999999999 899999999864
No 394
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=82.96 E-value=0.8 Score=49.41 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=27.3
Q ss_pred EEEeecceechhhHHHhhhhCCCC-cEEEeecc
Q psy16975 253 VAILGAGIIGLSTALELQRRFPNC-DVTVIADK 284 (728)
Q Consensus 253 VvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~ 284 (728)
|+|||||.+|.++|+.|+. .++ +|+++|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~--~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL--KELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHh--CCCcEEEEEeCC
Confidence 6899999999999999998 665 99999986
No 395
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=82.92 E-value=1 Score=43.98 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=28.5
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|.|||-|.+|...|.+|++ .|++|+++|+..
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~--~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAK--AGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHH--TTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHh--cCCeEEeeccch
Confidence 379999999999999999999 899999999864
No 396
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=82.86 E-value=0.9 Score=51.82 Aligned_cols=33 Identities=33% Similarity=0.525 Sum_probs=30.6
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+++|||+|.+|+-.|..|++ .|.+|+|+++..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~--~g~~Vtli~~~~ 202 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSR--LGVKVTVFERGD 202 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCC
Confidence 479999999999999999999 899999999864
No 397
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=82.66 E-value=0.91 Score=51.91 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=30.0
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.+++|||+|.+|+-.|..|++ .|.+|+||++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~ 201 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSA--LGTRVTIVNRS 201 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEEcc
Confidence 479999999999999999999 89999999985
No 398
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=82.41 E-value=1 Score=47.34 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=32.0
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
..+|+|||+|-+|+.+|..|++ .|. +++|+|.+.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~--~Gvg~i~lvD~D~ve 68 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAA--AGVGTLTLVDFDTVS 68 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCEEC
Confidence 4689999999999999999999 775 79999998654
No 399
>KOG2304|consensus
Probab=82.29 E-value=1.3 Score=45.82 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=32.8
Q ss_pred ccCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 247 ~~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
|.....|.|||||.+|.-+|--.+. .|+.|.++|+..
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~--sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAAT--SGLNVWLVDANE 44 (298)
T ss_pred cccccceEEEcccccchhHHHHHHh--cCCceEEecCCH
Confidence 4455689999999999999999999 999999999864
No 400
>PRK06223 malate dehydrogenase; Reviewed
Probab=82.26 E-value=1.1 Score=48.51 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=28.6
Q ss_pred ceEEEeecceechhhHHHhhhhCCCC-cEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~ 284 (728)
.+|+|||+|.+|.++|+.|+. .|+ +|.++|..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~--~~~~ev~L~D~~ 35 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL--KELGDVVLFDIV 35 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCeEEEEEECC
Confidence 479999999999999999998 654 99999984
No 401
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=82.26 E-value=1 Score=47.14 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=31.6
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
..+|+|||+|-+|..+|..|++ .|. +++|+|.+...
T Consensus 24 ~~~VlvvG~GglGs~va~~La~--~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAA--AGVGNLTLLDFDTVS 60 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHH--cCCCEEEEEeCCccc
Confidence 4589999999999999999999 664 79999998754
No 402
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=81.89 E-value=1.3 Score=43.92 Aligned_cols=34 Identities=32% Similarity=0.390 Sum_probs=29.8
Q ss_pred CcceEEEeecce-echhhHHHhhhhCCCCcEEEeecc
Q psy16975 249 SNHKVAILGAGI-IGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 249 ~~~dVvVIGAGI-iGLStA~~La~~~~G~~VtVIEk~ 284 (728)
...+|+|||+|- +|..+|.+|.+ .|.+|+|+.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~--~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLN--RNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh--CCCEEEEEECC
Confidence 356899999996 69999999999 88899999985
No 403
>PRK08328 hypothetical protein; Provisional
Probab=81.89 E-value=1.1 Score=46.70 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=31.4
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
...|+|||+|-+|+.+|..|++ .|. +++|+|.+...
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~--~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAA--AGVGRILLIDEQTPE 63 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCccC
Confidence 4579999999999999999999 775 69999988654
No 404
>PTZ00052 thioredoxin reductase; Provisional
Probab=81.65 E-value=1.1 Score=52.00 Aligned_cols=31 Identities=45% Similarity=0.452 Sum_probs=29.0
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeec
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk 283 (728)
.+++|||+|.+|+-.|..|++ .|.+|+|+++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~ 213 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNE--LGFDVTVAVR 213 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCcEEEEEc
Confidence 479999999999999999999 8999999975
No 405
>KOG0399|consensus
Probab=81.58 E-value=1.5 Score=54.10 Aligned_cols=42 Identities=36% Similarity=0.529 Sum_probs=37.2
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccC
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 300 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p 300 (728)
-..|+|||.|-+||++|-.|-+ .|+.|+|+||. .+.||+++.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk--~gh~v~vyer~-------dr~ggll~y 1826 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERS-------DRVGGLLMY 1826 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhh--cCcEEEEEEec-------CCcCceeee
Confidence 4589999999999999999999 99999999985 456788776
No 406
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=80.89 E-value=1.5 Score=42.04 Aligned_cols=34 Identities=35% Similarity=0.395 Sum_probs=29.0
Q ss_pred eEEEeec-ceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|+|||| |-+|.++|+.|....-..++.++|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 6999999 999999999999943345799999874
No 407
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=80.76 E-value=1.2 Score=51.25 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=30.3
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|+|||+|.+|+-+|..|++ .|.+|+|+++..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~ 216 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRR--LGAEVTILEALP 216 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCC
Confidence 489999999999999999999 899999999863
No 408
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=80.64 E-value=1.5 Score=44.45 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=31.8
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
+..|+|||+|-+|+.+|..|++ .|. +++|+|.+...
T Consensus 19 ~s~VlviG~gglGsevak~L~~--~GVg~i~lvD~d~ve 55 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVL--AGIDSITIVDHRLVS 55 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEECCcCC
Confidence 5689999999999999999999 786 59999998653
No 409
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=80.56 E-value=1.3 Score=49.36 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=30.2
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
..+|+|||+|.+|+.+|..|.. .|.+|+++|+.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~--lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANG--LGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHH--CCCeEEEEECC
Confidence 4579999999999999999999 88999999985
No 410
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=80.53 E-value=1.3 Score=46.46 Aligned_cols=40 Identities=28% Similarity=0.242 Sum_probs=32.9
Q ss_pred cCcceEEEeecceechhhHHHhhhhC---------CCCcEEEeeccccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRF---------PNCDVTVIADKFNM 287 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~---------~G~~VtVIEk~~~g 287 (728)
....+|+|||+|-+|+.+|..|++.. .|.+++|+|.+.+.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve 57 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVS 57 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEc
Confidence 45678999999999999999999831 13489999998764
No 411
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=80.49 E-value=1.2 Score=47.65 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=29.4
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|.|||.|.+|.+.|..|++ .|++|+++++..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~--~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAK--AGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence 38899999999999999999 899999999864
No 412
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.43 E-value=1.5 Score=47.74 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=29.1
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+.+|+|||+|-+|.++||.|+.....-++.|+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 458999999999999999999832234799999753
No 413
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=80.39 E-value=1.1 Score=51.63 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=28.8
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
+++|||||.+|+-.|..|++ .|.+|+|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAG--IGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHH--hCCcEEEEEec
Confidence 69999999999999999999 89999999763
No 414
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=80.37 E-value=1.3 Score=45.92 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=31.8
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
...|+|||+|-+|+.+|..|++ .|. +++|+|.+...
T Consensus 21 ~~~VlivG~GglGs~va~~La~--~Gvg~i~lvD~D~ve 57 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAA--AGVGKLGLVDDDVVE 57 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCEEc
Confidence 5689999999999999999999 776 79999998653
No 415
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=80.28 E-value=1.4 Score=45.18 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=28.5
Q ss_pred eEEEee-cceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 252 KVAILG-AGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 252 dVvVIG-AGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
+|.||| +|-+|.+.|..|++ .|++|+++++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~--~G~~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAK--AGNKIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHh--CCCEEEEEEcC
Confidence 599997 79999999999999 89999999875
No 416
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=80.26 E-value=1.4 Score=43.27 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=29.4
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...|+|+|+|.+|..+|.-|.. -|.+|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~--lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKG--LGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHH--TT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhH--CCCEEEeccCCH
Confidence 4589999999999999999999 899999999864
No 417
>PTZ00058 glutathione reductase; Provisional
Probab=80.16 E-value=1.3 Score=52.29 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=30.9
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+|+|||||.+|+-.|..|++ .|.+|+|+++..
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~--~G~~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNR--LGAESYIFARGN 270 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCcEEEEEecc
Confidence 4589999999999999999999 899999999863
No 418
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=80.15 E-value=1.3 Score=47.90 Aligned_cols=32 Identities=34% Similarity=0.418 Sum_probs=28.8
Q ss_pred eEEEeecceechhhHHHhhhhCCC--CcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPN--CDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G--~~VtVIEk~~ 285 (728)
.|+|||+|-+|.++|+.|+. .| .+|+++|+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~--~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN--QGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCCc
Confidence 59999999999999999999 67 5899999864
No 419
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=80.11 E-value=1.6 Score=47.17 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=30.1
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
..+|+|||+|++|.-.|.-+.- -|.+|+|+|..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g--lgA~Vtild~n 200 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG--LGADVTILDLN 200 (371)
T ss_pred CccEEEECCccccchHHHHHhc--cCCeeEEEecC
Confidence 4589999999999999999988 89999999986
No 420
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=80.02 E-value=1.3 Score=50.84 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=29.7
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.+++|||+|.+|+-.|..|++ .|.+|+++++.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~--~g~~Vtli~~~ 209 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTE--LGVKVTLVSSR 209 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcC
Confidence 479999999999999999999 89999999975
No 421
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=79.96 E-value=1.4 Score=48.57 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=29.4
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCc-EEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCD-VTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~~ 285 (728)
..|+|||+|.+|+-.|..|++ .|.+ |+|+++..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~--~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVL--LGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeecc
Confidence 479999999999999999998 7887 99998753
No 422
>PRK14694 putative mercuric reductase; Provisional
Probab=79.92 E-value=1.3 Score=50.82 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=29.7
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.+++|||+|.+|+-.|..|++ .|.+|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~--~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFAR--LGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEECC
Confidence 489999999999999999999 89999999864
No 423
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=79.92 E-value=1.3 Score=50.40 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=30.2
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+++|||+|.+|+-.|..|++ .|.+|+|+++..
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~ 199 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRG--LGVQVTLIYRGE 199 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHH--cCCeEEEEEeCC
Confidence 479999999999999999999 899999999853
No 424
>PRK14727 putative mercuric reductase; Provisional
Probab=79.91 E-value=1.3 Score=51.03 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=29.5
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.+++|||+|.+|+-.|..|++ .|.+|+|+++.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~--~G~~Vtlv~~~ 220 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYAR--LGSRVTILARS 220 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCEEEEEEcC
Confidence 479999999999999999999 89999999864
No 425
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=79.81 E-value=1.3 Score=50.59 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=30.5
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|+|||||.+|+-+|..|++ .|.+|+|+++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~--~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALR--LGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCEEEEEeecC
Confidence 489999999999999999999 899999999863
No 426
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=79.76 E-value=1.4 Score=50.79 Aligned_cols=33 Identities=15% Similarity=0.470 Sum_probs=30.8
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|.|||.|.+|.+.|..|++ .|++|+++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~--~G~~V~v~dr~~ 34 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIAS--RGFKISVYNRTY 34 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence 379999999999999999999 999999999864
No 427
>PRK06116 glutathione reductase; Validated
Probab=79.70 E-value=1.4 Score=50.29 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=30.5
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|+|||+|.+|+-+|..|++ .|.+|+++++..
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~ 200 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNG--LGSETHLFVRGD 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCC
Confidence 589999999999999999999 899999999864
No 428
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=79.66 E-value=1.5 Score=47.18 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=29.6
Q ss_pred ceEEEeecceechhhHHHhhhhCCCC-cEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~ 285 (728)
.+|+|||+|-+|.++|+.|++ .|. +|+|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~--~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLT--LGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHH--cCCCEEEEECCCH
Confidence 479999999999999999999 776 799999863
No 429
>KOG2311|consensus
Probab=79.63 E-value=1.5 Score=49.71 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=32.3
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...|||||||||=+|+-+|...++ -|.+.+++-...
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR--~Ga~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAAR--LGARTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHh--cCCceEEeeccc
Confidence 567899999999999999999999 899999988753
No 430
>PRK13748 putative mercuric reductase; Provisional
Probab=79.61 E-value=1.3 Score=51.88 Aligned_cols=32 Identities=25% Similarity=0.531 Sum_probs=29.8
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.+++|||+|.+|+-.|..|++ .|.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFAR--LGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCEEEEEecC
Confidence 579999999999999999999 89999999874
No 431
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=79.45 E-value=1.7 Score=48.61 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=31.3
Q ss_pred CcceEEEee-cceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 249 SNHKVAILG-AGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 249 ~~~dVvVIG-AGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
....|+||| .|.+|.+.|..|.+ .|++|+++++..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~--~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTL--SGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHH--CCCeEEEeCCCc
Confidence 446799999 89999999999999 899999999853
No 432
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=79.37 E-value=1.4 Score=51.34 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=29.9
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
..+|+|||||.+|+-+|..|++ .+.+|+|+++.
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~--~g~~Vtli~~~ 384 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAG--IVRHVTVLEFA 384 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHh--cCcEEEEEEeC
Confidence 3589999999999999999998 78999999864
No 433
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=79.21 E-value=1.6 Score=46.76 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=29.8
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|.|||.|.+|...|..|++ .|++|+++|+..
T Consensus 4 ~IgviG~G~mG~~~a~~l~~--~g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLK--AGYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence 69999999999999999999 899999999863
No 434
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=79.20 E-value=1.6 Score=39.53 Aligned_cols=31 Identities=39% Similarity=0.468 Sum_probs=27.9
Q ss_pred EEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 253 VvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
|+|||.|-.|..+|-.|.+ .+.+|+++|++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~--~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE--GGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH--TTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHh--CCCEEEEEECCc
Confidence 6899999999999999999 788999999975
No 435
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=78.95 E-value=1.5 Score=49.86 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=30.0
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.+|+|||+|.+|+-.|..|++ .|.+|+|+++.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~--~g~~Vtli~~~ 190 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFAN--FGSKVTILEAA 190 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHH--CCCeEEEEecC
Confidence 489999999999999999999 89999999985
No 436
>PRK10262 thioredoxin reductase; Provisional
Probab=78.92 E-value=1.5 Score=47.50 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=30.7
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+|+|||+|.+|+-+|..|++ .+.+|+++++..
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~--~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--hCCEEEEEEECC
Confidence 3589999999999999999999 789999999863
No 437
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=78.81 E-value=1.4 Score=52.86 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=30.3
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|+|||||.+|+-.|..|++ .|.+|+|||+..
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~--~G~eVTLIe~~~ 345 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTA--LGSEVVSFEYSP 345 (659)
T ss_pred CceEEECCCHHHHHHHHHHHh--CCCeEEEEeccC
Confidence 479999999999999999999 899999999864
No 438
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=78.74 E-value=1.5 Score=49.61 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=29.5
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.+|+|||||.+|+-.|..|.+ .|.+|+++++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~--~g~~Vtli~~~ 181 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKH--LGKNVRIIQLE 181 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHh--cCCcEEEEeCC
Confidence 479999999999999999999 89999999875
No 439
>PLN02507 glutathione reductase
Probab=78.40 E-value=1.6 Score=50.75 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=30.3
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|+|||+|.+|+-.|..|++ .|.+|+|+++..
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~ 236 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRG--MGATVDLFFRKE 236 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHH--cCCeEEEEEecC
Confidence 479999999999999999999 899999999853
No 440
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=78.11 E-value=2 Score=46.16 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=31.1
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...|+|||.|.+|-|.|..|.+ .|+.|.|++++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~--~g~~v~i~g~d~ 36 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKE--AGLVVRIIGRDR 36 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHH--cCCeEEEEeecC
Confidence 3479999999999999999999 999999999875
No 441
>PTZ00117 malate dehydrogenase; Provisional
Probab=77.95 E-value=1.9 Score=47.13 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=29.6
Q ss_pred cceEEEeecceechhhHHHhhhhCCC-CcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~ 285 (728)
..+|+|||||-+|.++|+.|+. .| .+|.++|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~--~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQ--KNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHH--CCCCeEEEEECCC
Confidence 4589999999999999999998 66 5899999864
No 442
>PRK08223 hypothetical protein; Validated
Probab=77.95 E-value=1.7 Score=46.79 Aligned_cols=36 Identities=31% Similarity=0.278 Sum_probs=31.6
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
...|+|||+|-.|+.+|.+|++ .|. +++|+|.+...
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~--aGVG~i~lvD~D~Ve 63 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLAR--LGIGKFTIADFDVFE 63 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHH--hCCCeEEEEeCCCcc
Confidence 5689999999999999999999 665 79999998653
No 443
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=77.94 E-value=1.5 Score=53.76 Aligned_cols=33 Identities=39% Similarity=0.636 Sum_probs=30.2
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+++|||||.+|+-+|..|++ .|.+|+|+++..
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~--~G~~Vtvv~~~~ 173 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQN--LGMDVSVIHHAP 173 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHh--cCCeEEEEccCC
Confidence 479999999999999999999 899999999753
No 444
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=77.79 E-value=1.6 Score=51.39 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=30.8
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+|+|||||.+|+-+|..|++ .|.+|+++++..
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~--~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTR--YASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHc--cCCEEEEEEeCC
Confidence 3589999999999999999998 899999999864
No 445
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=77.54 E-value=2 Score=44.66 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=29.5
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC---cEEEeecc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC---DVTVIADK 284 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~---~VtVIEk~ 284 (728)
...|+|+|||-+|..+|+.|.+ .|. +|.|+|+.
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~--~G~~~~~i~ivdr~ 60 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLA--AGAKPENIVVVDSK 60 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHH--cCcCcceEEEEeCC
Confidence 3579999999999999999998 786 49999997
No 446
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=77.15 E-value=2.1 Score=46.65 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=29.2
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC--cEEEeecc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC--DVTVIADK 284 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~ 284 (728)
..+|+|||+|-+|.++|+.|+. .+. ++.++|..
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~--~~~~~el~L~D~~ 40 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN--QGIADELVIIDIN 40 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCC
Confidence 4589999999999999999998 666 79999974
No 447
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=77.08 E-value=1.5 Score=48.27 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=31.0
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecccccccCCCCccccccCC
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPS 301 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~~g~gAS~~agGii~p~ 301 (728)
.+|+++||.|..+||.|..|.+. ...++..+|+.. .-.|+.|++-+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~-~~~~~~f~e~~~----~f~Wh~gmll~~ 48 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEH-GDLKALFLERRP----SFSWHPGMLLPG 48 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH-H---EEEEES-S----S--TTGGG--SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhc-CCCCEEEEecCC----CCCcCCccCCCC
Confidence 47999999999999999999995 358999999864 345677776663
No 448
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.06 E-value=2 Score=48.77 Aligned_cols=33 Identities=33% Similarity=0.358 Sum_probs=30.1
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..|+|+|+|-+|.++|..|++ .|++|++.|+..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~--~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHK--LGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHH--CCCEEEEEcCCC
Confidence 469999999999999999999 999999999754
No 449
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=76.99 E-value=2.1 Score=46.30 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=29.1
Q ss_pred ceEEEeecceechhhHHHhhhhCCCC--cEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNC--DVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~~ 285 (728)
.+|+|||+|.+|.+.|..|++ .|+ +|+++++..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~--~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRR--LGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHh--cCCCcEEEEEECCH
Confidence 479999999999999999998 774 899999863
No 450
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=76.92 E-value=1.7 Score=53.65 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=30.3
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+++|||||.+|+-+|..|++ .|.+|+|+++..
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~--~G~~VtvVe~~~ 178 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKN--LGVETHVIEFAP 178 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEeccc
Confidence 479999999999999999999 899999999753
No 451
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=76.92 E-value=1.9 Score=46.54 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=29.9
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|.|||.|.+|.+.|..|++ .|++|+++|+..
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~--~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLK--QGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence 69999999999999999999 899999999863
No 452
>PRK12831 putative oxidoreductase; Provisional
Probab=76.80 E-value=1.8 Score=49.74 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=30.7
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+|+|||||.+|+-+|..|.+ .|.+|+|+.+..
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r--~Ga~Vtlv~r~~ 314 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALR--LGAEVHIVYRRS 314 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHH--cCCEEEEEeecC
Confidence 4589999999999999999999 899999998753
No 453
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=76.72 E-value=2.2 Score=43.30 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=32.2
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
....|+|||+|-+|+.+|..|+. .|. +++|+|.+...
T Consensus 20 ~~s~VlIiG~gglG~evak~La~--~GVg~i~lvD~d~ve 57 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVL--SGIGSLTILDDRTVT 57 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHH--cCCCEEEEEECCccc
Confidence 35689999999999999999999 887 59999998643
No 454
>PLN02546 glutathione reductase
Probab=76.59 E-value=1.8 Score=50.96 Aligned_cols=34 Identities=32% Similarity=0.378 Sum_probs=30.6
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+|+|||||.+|+-.|..|++ .|.+|+|+++..
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~--~g~~Vtlv~~~~ 285 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNG--LKSDVHVFIRQK 285 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEecc
Confidence 3589999999999999999999 899999999753
No 455
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=76.48 E-value=2.2 Score=45.83 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=29.1
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCc-EEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCD-VTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~-VtVIEk~ 284 (728)
..++|+|||-+|.++|+.|++ .|.+ |+|++|.
T Consensus 127 k~vlI~GAGGagrAia~~La~--~G~~~V~I~~R~ 159 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCAL--DGAKEITIFNIK 159 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHH--CCCCEEEEEeCC
Confidence 469999999999999999999 8886 9999985
No 456
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=76.41 E-value=1.9 Score=48.12 Aligned_cols=36 Identities=28% Similarity=0.417 Sum_probs=31.9
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
...|+|||+|-+|+.+|..|++ .|. +++|+|.+.+.
T Consensus 41 ~~~VliiG~GglG~~v~~~La~--~Gvg~i~ivD~D~ve 77 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLAS--AGVGTITLIDDDTVD 77 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--cCCCEEEEEeCCEEc
Confidence 4579999999999999999999 775 89999998753
No 457
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=76.34 E-value=1.9 Score=44.96 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=32.0
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
...|+|||+|-+|..+|..|++ .|. +++|+|.+...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar--~GVg~i~LvD~D~V~ 47 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALAR--SGVGKLTLIDFDVVC 47 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCEEC
Confidence 4579999999999999999999 776 89999998754
No 458
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=75.97 E-value=1.8 Score=49.01 Aligned_cols=40 Identities=33% Similarity=0.431 Sum_probs=34.3
Q ss_pred cccCcceEEEeecceechhhHHHhhhhC---CCCcEEEeeccc
Q psy16975 246 VMGSNHKVAILGAGIIGLSTALELQRRF---PNCDVTVIADKF 285 (728)
Q Consensus 246 ~~~~~~dVvVIGAGIiGLStA~~La~~~---~G~~VtVIEk~~ 285 (728)
+|...+|++|||||-+|+.+||+|+... +..+|.+||.+.
T Consensus 14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~ 56 (486)
T COG2509 14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGL 56 (486)
T ss_pred HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEecc
Confidence 4677899999999999999999999632 378999999864
No 459
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=75.68 E-value=2.5 Score=44.18 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=33.2
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNMDT 289 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g~g 289 (728)
+.+|+|||.|-+|..++-.|++ .|. +++|||.+...-.
T Consensus 30 ~~~V~VvGiGGVGSw~veALaR--sGig~itlID~D~v~vT 68 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALAR--SGIGRITLIDMDDVCVT 68 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHH--cCCCeEEEEeccccccc
Confidence 5689999999999999999999 665 7999999986533
No 460
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=75.56 E-value=2.4 Score=45.75 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=28.0
Q ss_pred eEEEee-cceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILG-AGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIG-AGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.|+|.| ||.||..|+.+|.+ .|++|+|+|.-.
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~--~G~~vvV~DNL~ 34 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLK--TGHEVVVLDNLS 34 (329)
T ss_pred eEEEecCcchhHHHHHHHHHH--CCCeEEEEecCC
Confidence 467775 69999999999999 999999999753
No 461
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=75.56 E-value=2.4 Score=43.11 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=29.6
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
..|+|+|.|-+|..+|..|.+ .|++|++.|++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~--~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLE--EGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence 479999999999999999999 89999998865
No 462
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=75.46 E-value=2.2 Score=45.98 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=29.9
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|.|||.|.+|.+.|..|++ .|++|+++++..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~--~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAK--RGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHH--CCCEEEEEECCH
Confidence 69999999999999999999 899999999864
No 463
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=75.23 E-value=2.8 Score=36.41 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=29.2
Q ss_pred cceEEEeecceechhhHHHhhhhCC-CCcEEEeecc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFP-NCDVTVIADK 284 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~-G~~VtVIEk~ 284 (728)
..+++|+|+|.+|..+|..|.+ . +.+|.+++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~--~~~~~v~v~~rd 56 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLAD--EGGKKVVLCDRD 56 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCC
Confidence 4479999999999999999999 5 6789999993
No 464
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=75.23 E-value=2.3 Score=47.28 Aligned_cols=36 Identities=33% Similarity=0.463 Sum_probs=31.9
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
...|+|||+|-+|+.+|..|++ .|. +++|+|.+.+.
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~--~Gvg~i~lvD~D~ve 64 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAG--AGVGHITIIDDDTVD 64 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCEEc
Confidence 4689999999999999999999 776 79999998653
No 465
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=75.09 E-value=2.6 Score=40.18 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=29.3
Q ss_pred cceEEEeecceechhhHHHhhhhCCC-CcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~~ 285 (728)
...++|||+|.+|.+.|..|++ .| .+|+++++..
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~--~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAE--LGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCCEEEEEcCCH
Confidence 3479999999999999999998 64 7899998753
No 466
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=75.04 E-value=2.5 Score=44.82 Aligned_cols=33 Identities=33% Similarity=0.588 Sum_probs=29.8
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
...++|+|+|-+|.++|+.|++ .|.+|+|++|.
T Consensus 117 ~k~vliiGaGg~g~aia~~L~~--~g~~v~v~~R~ 149 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLLK--ADCNVIIANRT 149 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 3479999999999999999999 78999999875
No 467
>PRK08017 oxidoreductase; Provisional
Probab=75.03 E-value=2.7 Score=43.29 Aligned_cols=32 Identities=41% Similarity=0.452 Sum_probs=29.2
Q ss_pred eEEEeec-ceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.|+|+|| |-+|.++|.+|++ .|++|+++++..
T Consensus 4 ~vlVtGasg~IG~~la~~l~~--~g~~v~~~~r~~ 36 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKR--RGYRVLAACRKP 36 (256)
T ss_pred EEEEECCCChHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 5999999 9999999999999 899999998853
No 468
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=74.84 E-value=2.4 Score=45.74 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=29.9
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|.|||.|.+|...|..|++ .|++|+++|+..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~--~g~~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLR--GGHEVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHH--CCCeEEEEECCH
Confidence 69999999999999999999 899999999864
No 469
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=74.76 E-value=2.3 Score=44.81 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=29.7
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
.+|+|||+|.+|+-+|.+|++ .+.+|+++++.
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~--~~~~V~~v~~~ 173 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTR--IAKKVTLVHRR 173 (300)
T ss_pred CEEEEECCChHHHHHHHHHHh--hcCEEEEEEeC
Confidence 489999999999999999999 78999999985
No 470
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=74.75 E-value=3.1 Score=46.21 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=32.7
Q ss_pred ccCcceEEEeec-ceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 247 MGSNHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 247 ~~~~~dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+...+.|+|.|| |.+|..++.+|.+ .|++|+++++..
T Consensus 18 ~~~~~~IlVtGgtGfIG~~l~~~L~~--~G~~V~~v~r~~ 55 (370)
T PLN02695 18 PSEKLRICITGAGGFIASHIARRLKA--EGHYIIASDWKK 55 (370)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHh--CCCEEEEEEecc
Confidence 445678999998 9999999999999 899999999853
No 471
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.38 E-value=2.7 Score=47.57 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=30.1
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.+|+|||-|.+|.|.|..|.+ .|.+|++.|+..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~--~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQ--KGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHH--CCCEEEEEeCCc
Confidence 469999999999999999999 899999999754
No 472
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=74.34 E-value=2.3 Score=44.44 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=30.0
Q ss_pred eEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
.|+|||+|-+|+.++..|+. .|. +++|+|.+...
T Consensus 1 kVlvvG~GGlG~eilk~La~--~Gvg~i~ivD~D~Ve 35 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLAL--MGFGQIHVIDMDTID 35 (234)
T ss_pred CEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCEEc
Confidence 38999999999999999999 665 79999998754
No 473
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=74.28 E-value=2.6 Score=44.39 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=28.9
Q ss_pred ceEEEeecceechhhHHHhhhhCCC---CcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPN---CDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G---~~VtVIEk~~ 285 (728)
.+|.|||+|-+|.+.|..|.+ .| .+|.++++..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~--~g~~~~~v~v~~r~~ 38 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLA--SGVPAKDIIVSDPSP 38 (267)
T ss_pred CEEEEEechHHHHHHHHHHHh--CCCCcceEEEEcCCH
Confidence 369999999999999999998 67 6899998863
No 474
>PRK05993 short chain dehydrogenase; Provisional
Probab=74.27 E-value=2.8 Score=44.14 Aligned_cols=33 Identities=27% Similarity=0.210 Sum_probs=29.7
Q ss_pred ceEEEeec-ceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..|+|.|| |-+|..+|..|++ .|++|+++++..
T Consensus 5 k~vlItGasggiG~~la~~l~~--~G~~Vi~~~r~~ 38 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQS--DGWRVFATCRKE 38 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH--CCCEEEEEECCH
Confidence 46899998 9999999999999 899999999864
No 475
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=74.13 E-value=2.3 Score=47.90 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=31.8
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
...|+|||+|-+|+.+|..|++ .|. +++|+|.+.+.
T Consensus 42 ~~~VlviG~GGlGs~va~~La~--~Gvg~i~lvD~D~ve 78 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAA--AGVGTLGIVEFDVVD 78 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCEec
Confidence 5589999999999999999999 776 79999998754
No 476
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=74.08 E-value=2.3 Score=49.22 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=28.5
Q ss_pred ceEEEeecceechhhHHHhhhh-CCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRR-FPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~-~~G~~VtVIEk~~ 285 (728)
.+++|||||.+|+-.|..|+.. ..|.+|+|+++..
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~ 223 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN 223 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC
Confidence 4799999999999999876541 1489999999864
No 477
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=73.94 E-value=2.9 Score=41.94 Aligned_cols=33 Identities=24% Similarity=0.476 Sum_probs=29.5
Q ss_pred cceEEEeec-ceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 250 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 250 ~~dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
...++|+|| |-+|..+|..|++ .|.+|+++.|.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~--~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAR--EGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence 357999997 9999999999999 88999999875
No 478
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=73.81 E-value=2.4 Score=49.34 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=30.5
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+|+|||||.+|+-+|..|+. .+.+|+|+++..
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~--~~~~Vtlv~~~~ 384 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAG--IVKHVTVLEFAP 384 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--cCCEEEEEEECc
Confidence 3589999999999999999999 889999998753
No 479
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=73.71 E-value=2.8 Score=45.28 Aligned_cols=34 Identities=35% Similarity=0.402 Sum_probs=31.0
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...|+|||.|.+|..+|..|.+ .|.+|+++++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~--~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKA--LGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCEEEEEECCH
Confidence 4589999999999999999999 899999999873
No 480
>PRK05442 malate dehydrogenase; Provisional
Probab=73.52 E-value=2.6 Score=46.25 Aligned_cols=35 Identities=23% Similarity=0.326 Sum_probs=29.0
Q ss_pred cCcceEEEeec-ceechhhHHHhhhhCCCC-------cEEEeecc
Q psy16975 248 GSNHKVAILGA-GIIGLSTALELQRRFPNC-------DVTVIADK 284 (728)
Q Consensus 248 ~~~~dVvVIGA-GIiGLStA~~La~~~~G~-------~VtVIEk~ 284 (728)
+...+|.|||+ |-+|.++||.|+. .+. ++.++|..
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~--~~~~~~~~~~el~LiDi~ 44 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIAS--GDMLGKDQPVILQLLEIP 44 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHh--hhhcCCCCccEEEEEecC
Confidence 44568999998 9999999999987 443 79999874
No 481
>PRK06153 hypothetical protein; Provisional
Probab=73.49 E-value=2.7 Score=46.96 Aligned_cols=43 Identities=12% Similarity=0.177 Sum_probs=34.5
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeecccccccCCCCc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNMDTTSDGA 294 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g~gAS~~a 294 (728)
...|+|||+|-+|..+|..|++ .|. +++|+|.+..-...-.+.
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR--~GVgeI~LVD~D~Ve~SNLnRQ 219 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAK--TPVREIHLFDGDDFLQHNAFRS 219 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHH--cCCCEEEEECCCEecccccccc
Confidence 4579999999999999999999 565 899999987654433333
No 482
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=73.21 E-value=3.3 Score=47.36 Aligned_cols=34 Identities=38% Similarity=0.466 Sum_probs=31.2
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...|+|+|-|..|+++|..|.+ .|++|++.|...
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~--~G~~v~v~D~~~ 40 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLK--LGAEVTVSDDRP 40 (448)
T ss_pred CCEEEEEecccccHHHHHHHHH--CCCeEEEEcCCC
Confidence 4579999999999999999999 999999999654
No 483
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=72.92 E-value=2.8 Score=47.59 Aligned_cols=32 Identities=44% Similarity=0.567 Sum_probs=29.7
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
+|+|||+|-+|..+|..|.+ .|++|+++|++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~--~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSG--ENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCcEEEEECCH
Confidence 69999999999999999999 899999999853
No 484
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=72.69 E-value=2.6 Score=45.87 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=26.9
Q ss_pred eEEEeecceechhhHHHhhhhCCCC--cEEEeecc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNC--DVTVIADK 284 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~--~VtVIEk~ 284 (728)
+|+|||+|-+|.++||.|+. .+. ++.++|..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~--~~~~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA--LGLFSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCC
Confidence 48999999999999999998 554 69999974
No 485
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=72.48 E-value=3 Score=48.50 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=30.3
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..+|+|||+|.+|+.++..+.. .|.+|+++|...
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 5689999999999999998888 788999999863
No 486
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=72.46 E-value=2.7 Score=46.95 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=32.2
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
....|+|||+|-+|..+|..|++ .|. +++|+|.+...
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~--~Gvg~i~lvD~d~v~ 171 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAA--AGVGTLGIVDHDVVD 171 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCEec
Confidence 35579999999999999999999 776 79999998653
No 487
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=72.38 E-value=2.5 Score=45.77 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=27.2
Q ss_pred EEEeecceechhhHHHhhhhCCC--CcEEEeeccc
Q psy16975 253 VAILGAGIIGLSTALELQRRFPN--CDVTVIADKF 285 (728)
Q Consensus 253 VvVIGAGIiGLStA~~La~~~~G--~~VtVIEk~~ 285 (728)
|.|||+|-+|.++|+.|+. .| .+++++|...
T Consensus 1 i~iiGaG~VG~~~a~~l~~--~~~~~el~l~D~~~ 33 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA--KGLASELVLVDVNE 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHh--cCCCCEEEEEeCCc
Confidence 5799999999999999998 66 5799999853
No 488
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=72.24 E-value=3.2 Score=44.33 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=29.7
Q ss_pred cceEEEeecceechhhHHHhhhhCCC-CcEEEeecc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPN-CDVTVIADK 284 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G-~~VtVIEk~ 284 (728)
...++|+|+|-+|.++|+.|++ .| .+|+|++|.
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~--~g~~~V~v~~R~ 156 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLD--LGVAEITIVNRT 156 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHH--cCCCEEEEEeCC
Confidence 3479999999999999999998 78 789999985
No 489
>PLN02240 UDP-glucose 4-epimerase
Probab=72.21 E-value=3.4 Score=44.93 Aligned_cols=34 Identities=29% Similarity=0.437 Sum_probs=30.0
Q ss_pred CcceEEEeec-ceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 249 SNHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 249 ~~~dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
+...|+|.|| |.+|..++.+|++ .|++|+++++.
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~--~g~~V~~~~~~ 38 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLL--AGYKVVVIDNL 38 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHH--CCCEEEEEeCC
Confidence 3457999997 9999999999999 89999999864
No 490
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=72.14 E-value=3.2 Score=44.68 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=30.7
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...++|||.|-+|.++|..|.. .|.+|+|+++..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~--~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSA--LGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 3579999999999999999998 889999999863
No 491
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=72.01 E-value=2.9 Score=47.30 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=30.4
Q ss_pred cceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...|+|||+|-+|+.+|..|.. .|.+|+|+|.+.
T Consensus 202 GktVvViG~G~IG~~va~~ak~--~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRG--QGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECCh
Confidence 4579999999999999999988 899999998763
No 492
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.94 E-value=3.4 Score=47.05 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=30.2
Q ss_pred ceEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 251 ~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
..|+|+|.|.+|+++|..|++ .|++|++.|...
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~--~g~~v~~~d~~~ 38 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRK--NGAEVAAYDAEL 38 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCC
Confidence 469999999999999999999 999999999754
No 493
>PRK06545 prephenate dehydrogenase; Validated
Probab=71.87 E-value=3 Score=46.26 Aligned_cols=32 Identities=38% Similarity=0.471 Sum_probs=29.3
Q ss_pred eEEEeecceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
.|.|||.|.+|.+.|..|.+ .|++|.+++++.
T Consensus 2 ~I~iIG~GliG~siA~~L~~--~G~~v~i~~~~~ 33 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKA--AGPDVFIIGYDP 33 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHh--cCCCeEEEEeCC
Confidence 48999999999999999999 899999998764
No 494
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=71.85 E-value=4 Score=38.62 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=27.8
Q ss_pred CcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 249 ~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
...+|.|||+|-+|.+.|..|.+ .|+.|.-+...
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~--ag~~v~~v~sr 42 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALAR--AGHEVVGVYSR 42 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHH--TTSEEEEESSC
T ss_pred CccEEEEECCCHHHHHHHHHHHH--CCCeEEEEEeC
Confidence 45689999999999999999999 89998776543
No 495
>KOG3851|consensus
Probab=71.63 E-value=2.9 Score=45.37 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=32.1
Q ss_pred cCcceEEEeecceechhhHHHhhhhCCCCcEEEeecc
Q psy16975 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284 (728)
Q Consensus 248 ~~~~dVvVIGAGIiGLStA~~La~~~~G~~VtVIEk~ 284 (728)
..++.|+|||||-.|++.|-.+.+..+.-+|.|||..
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~ 73 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA 73 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence 4678999999999999999999986555589999974
No 496
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=71.45 E-value=2.8 Score=47.69 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=30.6
Q ss_pred eEEEeecceechhhHHHhhhhCCCC------cEEEeeccccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNC------DVTVIADKFNM 287 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~------~VtVIEk~~~g 287 (728)
.|+|||+|-+|+.++..|+. .|. +++|+|.+.+.
T Consensus 1 kVlvVGaGGlGcE~lKnLal--~Gv~~g~~G~I~IvD~D~Ie 40 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFAL--MGVGTGESGEITVTDMDNIE 40 (435)
T ss_pred CEEEECCCHHHHHHHHHHHH--cCCCcCCCCeEEEECCCCcc
Confidence 48999999999999999999 787 89999998754
No 497
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=71.42 E-value=3 Score=49.48 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=31.5
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
...|+|||+|-.|+.+|..|+. -|. +++++|.+.+.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~--~GVg~ItlVD~D~Ve 374 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIG--WGVRHITFVDNGKVS 374 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHH--cCCCeEEEEcCCEEC
Confidence 4579999999999999999999 775 69999988653
No 498
>PRK06179 short chain dehydrogenase; Provisional
Probab=71.36 E-value=3.7 Score=42.79 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=29.6
Q ss_pred cceEEEeec-ceechhhHHHhhhhCCCCcEEEeeccc
Q psy16975 250 NHKVAILGA-GIIGLSTALELQRRFPNCDVTVIADKF 285 (728)
Q Consensus 250 ~~dVvVIGA-GIiGLStA~~La~~~~G~~VtVIEk~~ 285 (728)
...++|+|| |-+|.++|.+|++ +|++|+++++..
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~--~g~~V~~~~r~~ 38 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLAR--AGYRVFGTSRNP 38 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHH--CCCEEEEEeCCh
Confidence 346888886 8899999999999 899999999864
No 499
>PRK07411 hypothetical protein; Validated
Probab=71.29 E-value=2.9 Score=46.97 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=31.9
Q ss_pred cceEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 250 NHKVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 250 ~~dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
...|+|||+|-.|+.+|..|+. .|. +++|+|.+.+.
T Consensus 38 ~~~VlivG~GGlG~~va~~La~--~Gvg~l~lvD~D~ve 74 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAA--AGIGRIGIVDFDVVD 74 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCEec
Confidence 4589999999999999999999 776 79999998754
No 500
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=71.25 E-value=2.9 Score=45.12 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=30.0
Q ss_pred eEEEeecceechhhHHHhhhhCCCC-cEEEeeccccc
Q psy16975 252 KVAILGAGIIGLSTALELQRRFPNC-DVTVIADKFNM 287 (728)
Q Consensus 252 dVvVIGAGIiGLStA~~La~~~~G~-~VtVIEk~~~g 287 (728)
.|+|||+|-+|+.+|..|+. .|. +++|+|.+.+.
T Consensus 1 kVlVVGaGGlG~eilknLal--~Gvg~I~IvD~D~Ve 35 (291)
T cd01488 1 KILVIGAGGLGCELLKNLAL--SGFRNIHVIDMDTID 35 (291)
T ss_pred CEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCEec
Confidence 48999999999999999999 775 79999998754
Done!