RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16975
(728 letters)
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 66.6 bits (163), Expect = 3e-12
Identities = 37/144 (25%), Positives = 54/144 (37%), Gaps = 14/144 (9%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
V ++G GI+GLSTA EL RR VT++ S AGL P
Sbjct: 1 DVVVIGGGIVGLSTAYELARR--GLSVTLLERGDLASGASGRNAGLL--HPGLRKERAPL 56
Query: 312 TKEWIRYSYDHYAGLLSE---NCGVQVINGYNLAKSEKQCAENHYLKPVL----PVYKRM 364
S D + L+ E +C + LA+ E + L L + +
Sbjct: 57 LARLALESRDLWRELIEELGIDCDFRRTGVLVLARDEAELDALRRLAAALRALGLPVELL 116
Query: 365 SEEELAEIGPG---DWKYGIYMST 385
EEL E+ PG + G++
Sbjct: 117 DAEELRELEPGLSPGIRGGLFYPD 140
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 63.0 bits (153), Expect = 2e-10
Identities = 70/371 (18%), Positives = 107/371 (28%), Gaps = 66/371 (17%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMG 306
M V I+G GI+GLS A L R DVTV+ + AG +
Sbjct: 1 MSMKMDVVIIGGGIVGLSAAYYLAERGA--DVTVLEAGEAGGGAAGRNAGGI--LAPWAS 56
Query: 307 PDLETTKEWI----RYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPV----- 357
P E + + + L G++ +LA E +
Sbjct: 57 PGGELEVRPLADLSLALWRELSEELGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEA 116
Query: 358 -LPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDGPS---NLGERPSTL 413
+ + E AE+ P + + +F P D L L
Sbjct: 117 AGEDAELLDAAEAAELEPA-------LGPDFVCGGLFDPTGGHLDPRLLTRALAAAAEEL 169
Query: 414 SVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENCGVQVINGYNLA 473
V + T V + G T ++ D V + G A
Sbjct: 170 GVVIIEGG----TPVTSLERDGRVVGVET--DGGTIEADK----------VVLAAG---A 210
Query: 474 KSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKNF 533
+ + A L LP+ + E G G+
Sbjct: 211 WAGELAATLGELP--LPLRPVRGQALTTEPPEGLLADGLAP------------------V 250
Query: 534 ASLVRLAGAYIIPSYGGLVTLGGTQDYGNAR---LGVDRFDSRAILNRTAAVRPEILAAP 590
+V G YI P G + +GGT + G + +L A+ P + A
Sbjct: 251 VLVVDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAELLRVARALLPGLADAG 310
Query: 591 VEKVWVGLRPY 601
+E W GLRP
Sbjct: 311 IEAAWAGLRPP 321
Score = 30.6 bits (69), Expect = 2.9
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 689 RIVHNYGHGGYGVTSAPGSARCA 711
+ GHGG+G T AP R
Sbjct: 338 NLYVATGHGGHGFTLAPALGRLL 360
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 48.3 bits (116), Expect = 8e-06
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVI 281
I+G GI+GLSTA++LQ R+P + V+
Sbjct: 5 FVIIGGGIVGLSTAMQLQERYPGARIAVL 33
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 48.1 bits (115), Expect = 1e-05
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
K+AI+G GI GLS A LQ+ P+ +VT+
Sbjct: 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLF 31
>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
Length = 451
Score = 46.0 bits (110), Expect = 6e-05
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
KVAI+G GI GLS A L ++ P+ D+T++
Sbjct: 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLL 31
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 42.4 bits (100), Expect = 6e-04
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 300
VAI+GAG GL+ AL L R DVT++ ++ + G P
Sbjct: 3 LDVAIVGAGPAGLALALALARA--GLDVTLL-ERAPRELLERGRGIALSP 49
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 42.6 bits (101), Expect = 6e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ V I+G GI+G +TA EL P+ V ++
Sbjct: 4 YDVVIIGGGIMGAATAYELSEYEPDLSVALL 34
>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase.
Length = 569
Score = 39.4 bits (92), Expect = 0.006
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 171 PSGPLRNEADLSWEVSVSVQQVTQTDEKVTPNLEIKQLNVQVTKVNPKSQTNATQNGDKK 230
P+ + + + L V+ +V + +++ + + ++ PK
Sbjct: 14 PAKLVTSSSSLRSPVAGAVLRSPLKSARLSVSSSLDSNVSDMSVNAPK------------ 61
Query: 231 GLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALEL 269
GLF P P G KVAI+GAG+ G+STA+EL
Sbjct: 62 GLF--P----PEPEAYKGPKLKVAIIGAGLAGMSTAVEL 94
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 38.3 bits (90), Expect = 0.012
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTV 280
K+AI+G GI GL+ A L +R +VTV
Sbjct: 1 KIAIVGGGIAGLAAAYRLAKR--GHEVTV 27
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 38.0 bits (89), Expect = 0.017
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 223 ATQNGDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 280
A + G + + PA +GS KVA++GAG GL+ A L R VTV
Sbjct: 518 ALEKGWDE---YKQRWHKPAG---IGSRKKVAVIGAGPAGLAAAYFLARA--GHPVTV 567
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 36.1 bits (84), Expect = 0.052
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284
+ V I+G G GL+ A+ R V +I +
Sbjct: 4 YDVIIIGGGPAGLTAAIYAARA--GLKVVLILEG 35
>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional.
Length = 413
Score = 36.0 bits (84), Expect = 0.066
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 251 HKVAILGAGIIGLSTALELQRR 272
KV I G GI GL+ AL L +R
Sbjct: 1 MKVLIAGGGIGGLTLALTLHQR 22
>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function
unknown].
Length = 485
Score = 35.9 bits (83), Expect = 0.068
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTV 280
+VAI GAG+ GL+ A EL DVT+
Sbjct: 2 RVAIAGAGLAGLAAAYELADA--GYDVTL 28
>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 82
Score = 32.9 bits (76), Expect = 0.069
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+V ++G G IGL A L + VTV+
Sbjct: 1 RVVVVGGGYIGLEFASALAKL--GSKVTVV 28
>gnl|CDD|234819 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit;
Validated.
Length = 416
Score = 35.5 bits (83), Expect = 0.084
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+V +LG+G+IG+++A L + +VTVI
Sbjct: 2 RVVVLGSGVIGVTSAWYLAQA--GHEVTVI 29
>gnl|CDD|236158 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 35.6 bits (83), Expect = 0.10
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 251 HKVAILGAGIIGLSTALELQRR 272
H V ++GAG +GL+ A++L ++
Sbjct: 24 HPVVVVGAGPVGLALAIDLAQQ 45
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 35.6 bits (83), Expect = 0.10
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
AI+G GI G + AL L RR VT+
Sbjct: 262 DAAIIGGGIAGAALALALARR--GWQVTLY 289
>gnl|CDD|132372 TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase.
This clade of sequences are members of the pfam01266
family of FAD-dependent oxidoreductases. Characterized
proteins within this family include glycerol-3-phosphate
dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit
(1.5.3.1) and a number of deaminating amino acid
oxidases (1.4.-.-). These genes have been consistently
observed in a genomic context including genes for the
import and catabolism of 2-aminoethylphosphonate (AEP).
If the substrate of this oxidoreductase is AEP itself,
then it is probably acting in the manner of a
deaminating oxidase, resulting in the same product
(phosphonoacetaldehyde) as the transaminase PhnW
(TIGR02326), but releasing ammonia instead of coupling
to pyruvate:alanine. Alternatively, it is reasonable to
suppose that the various ABC cassette transporters which
are also associated with these loci allow the import of
phosphonates closely related to AEP which may not be
substrates for PhnW.
Length = 460
Score = 35.5 bits (82), Expect = 0.10
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 238 QSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 296
Q PA P V + V I+G G GL TA+ ++++ P DV V+ D GA+G
Sbjct: 12 QPDPAPPLVGDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVL----EADLCGAGASG 66
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 35.3 bits (82), Expect = 0.12
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 296
+ V I+G+G+ GL+ AL L P+ VTV+ +++S A G
Sbjct: 4 DFEHPDVLIIGSGLAGLTAALSLA---PSFRVTVLTKGPLGESSSYWAQG 50
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 34.5 bits (80), Expect = 0.17
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284
M + KV I+G GI GLS A+ L+R D+ I +
Sbjct: 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38
>gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 575
Score = 34.7 bits (80), Expect = 0.17
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIA 282
H V I+G G+ G ALE++R P+ DV V+A
Sbjct: 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVA 35
>gnl|CDD|224513 COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic
diacylglycerol kinase [Lipid metabolism / General
function prediction only].
Length = 301
Score = 34.2 bits (79), Expect = 0.18
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 16 LIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFPG 68
L L G H++ P VE + + + + +DGE L P+ E+ PG
Sbjct: 237 LPDLLRGKHLENPDVEYLRAKKLE-ITSDPPIPVNLDGEYLGKTPVTIEVLPG 288
>gnl|CDD|233831 TIGR02352, thiamin_ThiO, glycine oxidase ThiO. This family
consists of the homotetrameric, FAD-dependent glycine
oxidase ThiO, from species such as Bacillus subtilis
that use glycine in thiamine biosynthesis. In general,
members of this family will not be found in species such
as E. coli that instead use tyrosine and the ThiH
protein [Biosynthesis of cofactors, prosthetic groups,
and carriers, Thiamine].
Length = 337
Score = 33.5 bits (77), Expect = 0.32
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 14/66 (21%)
Query: 542 AYIIPSYGGLVTLGGTQDYGNARLGVDRFDS-------RAILNRTAAVRPEILAAPVEKV 594
YI+P G + +G T + FD+ + +L + P + A + +
Sbjct: 232 VYIVPRRDGRLVVGATMEESG-------FDTTPTLGGIKELLRDAYTILPALKEARLLET 284
Query: 595 WVGLRP 600
W GLRP
Sbjct: 285 WAGLRP 290
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 33.8 bits (78), Expect = 0.33
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284
++ ILG G GLS A L R+ P+ ++T++ +
Sbjct: 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRR 37
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 33.7 bits (78), Expect = 0.33
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
M + V I+GAG GL+ A EL +R VTV+
Sbjct: 1 MTNKKSVVIIGAGPAGLTAAYELLKR--GYPVTVL 33
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 30.5 bits (70), Expect = 0.34
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 255 ILGAGIIGLSTALELQRRFPNCDVTVI 281
I+GAG+ GL A L +R DV V+
Sbjct: 1 IVGAGLSGLVAAYLLAKR--GKDVLVL 25
>gnl|CDD|236147 PRK08071, PRK08071, L-aspartate oxidase; Provisional.
Length = 510
Score = 33.4 bits (77), Expect = 0.42
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 296
M S V I+G+GI L+ A EL +V +I K ++ S A G
Sbjct: 1 MPSA-DVIIIGSGIAALTVAKELC---HEYNVIIITKKTKRNSNSHLAQG 46
>gnl|CDD|237093 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit;
Provisional.
Length = 410
Score = 33.1 bits (76), Expect = 0.52
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+A++GAGI G++TA L +R VTV
Sbjct: 3 HIAVIGAGITGVTTAYALAQR--GYQVTVF 30
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 32.7 bits (75), Expect = 0.52
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+V ++G G IGL A L + +VTV+
Sbjct: 144 RVVVVGGGYIGLELAAALAKL--GKEVTVV 171
Score = 29.6 bits (67), Expect = 5.3
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
V I+G G GL+ A+ L R V +I
Sbjct: 1 DVVIIGGGPAGLAAAIRL-ARL-GLKVALI 28
>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide
variety of proteins. These protein include potassium
channels, phosphoesterases, and various other
transporters. This domain binds to NAD.
Length = 116
Score = 31.4 bits (72), Expect = 0.56
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ I+G G +G S A EL+ DV VI
Sbjct: 1 IIIIGYGRVGRSLAEELREG--GPDVVVI 27
>gnl|CDD|236541 PRK09496, trkA, potassium transporter peripheral membrane
component; Reviewed.
Length = 453
Score = 32.8 bits (76), Expect = 0.62
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+V I+G G IG A L++ V +I
Sbjct: 232 KRVMIVGGGNIGYYLAKLLEKE--GYSVKLI 260
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members of
the pfam01266 family) is syntenically associated with a
family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 32.7 bits (75), Expect = 0.70
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ I+GAGI+GL+ A RR VTVI
Sbjct: 3 LIIVGAGILGLAHAYAAARR--GLSVTVI 29
>gnl|CDD|236259 PRK08401, PRK08401, L-aspartate oxidase; Provisional.
Length = 466
Score = 32.5 bits (74), Expect = 0.83
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 300
KV I+G G+ GL+ A+ L ++ DVT+I + AG+ P
Sbjct: 3 KVGIVGGGLAGLTAAISLAKK--GFDVTIIGPGIKKSNSYLAQAGIAFP 49
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 32.6 bits (75), Expect = 0.84
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 242 ANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGL 297
ANP+V+ + + I+G G+ G A E + P+ V I +K N+ + A GL
Sbjct: 3 ANPEVVEVDTDILIIGGGMAGCGAAFEAKEWAPDLKVL-IVEKANIKRSGAVAQGL 57
>gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component
[Inorganic ion transport and metabolism].
Length = 225
Score = 31.9 bits (73), Expect = 0.87
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
K+ I+GAG +G S A EL +V +I
Sbjct: 2 KIIIIGAGRVGRSVARELSEE--GHNVVLIDR 31
>gnl|CDD|215517 PLN02958, PLN02958, diacylglycerol kinase/D-erythro-sphingosine
kinase.
Length = 481
Score = 32.5 bits (74), Expect = 0.91
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query: 19 LASGSHIKVPGVEMIPVEAFRLVPH------SSGSYIVVDGEVLDYG 59
L+ G+H+K P V + V+AF L P + G I DGEVL G
Sbjct: 403 LSDGTHVKSPYVMYLKVKAFVLEPGPRTDDPTKGGIIDSDGEVLARG 449
>gnl|CDD|223928 COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 334
Score = 32.3 bits (74), Expect = 0.95
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 13/58 (22%)
Query: 251 HKVAILGAGIIG---LSTAL--ELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPN 303
K+ ++ +G L+ L L++ +PN + V+ K G A + + +P
Sbjct: 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPK--------GFAPILKLNPE 51
>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system
oxidoreductase, YpdA family. Members of this protein
family, including YpdA from Bacillus subtilis, are
apparent oxidoreductases present only in species with an
active bacillithiol system. They have been suggested
actually to be thiol disulfide oxidoreductases (TDOR),
although the evidence is incomplete [Unknown function,
Enzymes of unknown specificity].
Length = 316
Score = 32.2 bits (74), Expect = 1.0
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
V I+GAG GL+ A+E Q+ +I
Sbjct: 1 DVIIIGAGPCGLACAIEAQKA--GLSYLII 28
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 31.8 bits (73), Expect = 1.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 253 VAILGAGIIGLSTALELQR 271
+ I+G G +GL+ AL L R
Sbjct: 2 IVIVGGGPVGLALALALAR 20
>gnl|CDD|223842 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell
envelope biogenesis, outer membrane].
Length = 448
Score = 31.9 bits (73), Expect = 1.3
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPS 301
KV +LG G GL+ A L + +VTV D+ + + L
Sbjct: 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAPEGLAA--QPLLLEG 54
>gnl|CDD|99964 cd03789, GT1_LPS_heptosyltransferase, Lipopolysaccharide
heptosyltransferase is involved in the biosynthesis of
lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a
major component of the outer membrane of gram-negative
bacteria. LPS heptosyltransferase transfers heptose
molecules from ADP-heptose to
3-deoxy-D-manno-octulosonic acid (KDO), a part of the
inner core component of LPS. This family belongs to the
GT-B structural superfamily of glycoslytransferases,
which have characteristic N- and C-terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two
domains includes the catalytic center and permits a high
degree of flexibility.
Length = 279
Score = 31.5 bits (72), Expect = 1.3
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 17/101 (16%)
Query: 252 KVAILGAGIIG---LSTAL--ELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPN--- 303
++ ++ IG L+T L L+ R+P+ +TV+A A L E P
Sbjct: 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPP--------WFAPLLELMPEVDR 52
Query: 304 FMGPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKS 344
+ + K + L + I+ +S
Sbjct: 53 VIVLPKKHGKLGLGARRRLARALRRRRYDL-AIDLQGSLRS 92
>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase.
Carotene 7,8-desaturase, also called zeta-carotene
desaturase, catalyzes multiple steps in the pathway from
geranylgeranyl-PP to all-trans-lycopene in plants and
cyanobacteria. A similar enzyme and pathway is found in
the green sulfur bacterium Chlorobium tepidum.
Length = 474
Score = 31.7 bits (72), Expect = 1.5
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 252 KVAILGAGIIGLSTALEL 269
KVAI+GAG+ GLSTA+EL
Sbjct: 1 KVAIVGAGLAGLSTAVEL 18
>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional.
Length = 545
Score = 31.5 bits (72), Expect = 1.6
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284
S V I+G G +GL+ AL+L RR D ++ K
Sbjct: 6 SETPVLIVGGGPVGLALALDLGRR--GVDSILVERK 39
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 31.4 bits (71), Expect = 1.7
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
V ++GAG IGL A +R VT+I
Sbjct: 138 DVVVVGAGPIGLEAAEAAAKR--GKKVTLI 165
Score = 29.1 bits (65), Expect = 9.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287
+ I+G G GLS A L+R ++T+I +
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKY 35
>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase. This enzyme
oxidizes protoporphyrinogen IX to protoporphyrin IX, a
precursor of heme and chlorophyll. Bacillus subtilis
HemY also has coproporphyrinogen III to coproporphyrin
III oxidase activity in a heterologous expression
system, although the role for this activity in vivo is
unclear. This protein is a flavoprotein and has a
beta-alpha-beta dinucleotide binding motif near the
amino end [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 462
Score = 31.3 bits (71), Expect = 1.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
V I+G GI GL A L++ P V +
Sbjct: 4 HVVIIGGGISGLCAAYYLEKEIPELPVELT 33
>gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 474
Score = 31.6 bits (72), Expect = 1.8
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 252 KVAILGAGIIGLSTALEL-QRRFPNCDVTVIADKFNM 287
KVAI+G G G+ A L + P+ +++ + N
Sbjct: 3 KVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39
>gnl|CDD|217105 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA. This is a
family of 2-dehydropantoate 2-reductases also known as
ketopantoate reductases, EC:1.1.1.169. The reaction
catalyzed by this enzyme is: (R)-pantoate + NADP(+) <=>
2-dehydropantoate + NADPH. AbpA catalyzes the NADPH
reduction of ketopantoic acid to pantoic acid in the
alternative pyrimidine biosynthetic (APB) pathway. ApbA
and PanE are allelic. ApbA, the ketopantoate reductase
enzyme is required for the synthesis of thiamine via the
APB biosynthetic pathway.
Length = 150
Score = 30.3 bits (69), Expect = 2.0
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVIA 282
+AILGAG +G L R DVT+IA
Sbjct: 1 IAILGAGAVGSLYGARLAR--AGHDVTLIA 28
>gnl|CDD|147328 pfam05095, DUF687, Protein of unknown function (DUF687). This
family contains several uncharacterized Chlamydia
proteins.
Length = 542
Score = 31.2 bits (71), Expect = 2.3
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 678 MHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQSH 719
MH+ +RG+ +R+++N G G S+ + S +SH
Sbjct: 58 MHISELRGEPVRVLYNSGEGL---GSSFFLSCR--SSVSRSH 94
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 31.0 bits (71), Expect = 2.4
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 296
V I+G+G GLS AL L + V V++ + ++ A G
Sbjct: 8 QCDVLIIGSGAAGLSLALRLA---EHRRVAVLSKGPLSEGSTFYAQG 51
>gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General
function prediction only].
Length = 447
Score = 30.9 bits (70), Expect = 2.5
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTV 280
K+A++G+GI GLS A L RR DVT+
Sbjct: 10 KIAVIGSGISGLSAAWLLSRRH---DVTL 35
>gnl|CDD|224805 COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].
Length = 307
Score = 30.7 bits (70), Expect = 2.6
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 282
K+ ILGAG IG L + DVT++
Sbjct: 2 KILILGAGAIGSLLGARLAKA--GHDVTLLV 30
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 30.9 bits (70), Expect = 2.7
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 241 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN 286
K S HKVA++GAG GLS L R VTV K
Sbjct: 530 KPQGK--SSAHKVAVIGAGPAGLSAGYFLARA--GHPVTVFEKKEK 571
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This
model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This family
is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 30.7 bits (70), Expect = 2.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 253 VAILGAGIIGLSTALELQR 271
V I+G G++GLS AL L R
Sbjct: 2 VIIVGGGLVGLSLALALSR 20
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 30.6 bits (70), Expect = 3.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 249 SNHKVAILGAGIIGLSTALELQRR 272
+ +VA++G G GLS A L+R
Sbjct: 136 TGKRVAVIGGGPAGLSAAYHLRRM 159
>gnl|CDD|233302 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit.
The terms succinate dehydrogenase and fumarate reductase
may be used interchangeably in certain systems. However,
a number of species have distinct complexes, with the
fumarate reductase active under anaerobic conditions.
This model represents the fumarate reductase
flavoprotein subunit from several such species in which
a distinct succinate dehydrogenase is also found. Not
all bona fide fumarate reductases will be found by this
model.
Length = 580
Score = 30.6 bits (69), Expect = 3.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 296
H +A++GAG GL A+ P+ DV +I+ + M + + A G
Sbjct: 4 HDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEG 49
>gnl|CDD|216681 pfam01755, Glyco_transf_25, Glycosyltransferase family 25 (LPS
biosynthesis protein). Members of this family belong to
Glycosyltransferase family 25 This is a family of
glycosyltransferases involved in lipopolysaccharide
(LPS) biosynthesis. These enzymes catalyze the transfer
of various sugars onto the growing LPS chain during its
biosynthesis.
Length = 200
Score = 29.7 bits (67), Expect = 3.5
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 338 GYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEI 372
G L E C +HY ++++ E L I
Sbjct: 60 GRPLTLGEIGCFLSHYS-----LWQKCVELNLEYI 89
Score = 29.7 bits (67), Expect = 3.5
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 469 GYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEI 503
G L E C +HY ++++ E L I
Sbjct: 60 GRPLTLGEIGCFLSHYS-----LWQKCVELNLEYI 89
>gnl|CDD|213335 cd05133, RasGAP_IQGAP1, Ras-GTPase Activating Domain of IQ motif
containing GTPase activating protein 1. IQGAP1 is a
homodimeric protein that is widely expressed among
vertebrate cell types from early embryogenesis.
Mammalian IQGAP1 protein is the best characterized
member of the IQGAP family, and contains several
protein-interacting domains. Human IQGAP1 is most
similar to mouse Iqgap1 (94% identity) and has 62%
identity to human IQGAP2. IQGAP1 binds and cross-links
actin filaments in vitro and has been implicated in
Ca2+/calmodulin signaling, E-cadherin-dependent cell
adhesion, cell motility, and invasion. Yeast IQGAP
homologs have a role in the recruitment of actin
filaments, are components of the spindle pole body, and
are required for actomyosin ring assembly and
cytokinesis. Furthermore, IQGAP1 over-expression has
also been detected in gastric and colorectal carcinomas
and gastric cancer cell lines.
Length = 380
Score = 30.4 bits (68), Expect = 3.7
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 238 QSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRF--PNCDVTVIADKFNMDTTSD 292
Q +N +G N ++ + LS + + RRF CDV + DKFN+D SD
Sbjct: 231 QHAASNKMFLGDNAHLSPINEY---LSQSYQKFRRFFQAACDVPELEDKFNVDEYSD 284
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 30.3 bits (69), Expect = 3.8
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLF 298
V ++G+G+ GL+ ALE V V+ + ++G
Sbjct: 2 VVVIGSGLAGLAAALEAAEA--GLKVAVVEKGQPFGGATAWSSGGI 45
>gnl|CDD|235905 PRK06996, PRK06996, hypothetical protein; Provisional.
Length = 398
Score = 30.4 bits (69), Expect = 3.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 236 PTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRR 272
T + A P + +AI+GAG +GL+ A L RR
Sbjct: 2 TTAASMAAP-----DFDIAIVGAGPVGLALAGWLARR 33
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 30.2 bits (68), Expect = 4.0
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 573 RAILNRTAAV---RPEILAAPVEKVWVGLRPYRHHVRVERDLTGAAQYLTWY--PVFKVY 627
+A+LN+ A + E LA +E + G +P RH +R D+ GAA+ + WY + KVY
Sbjct: 84 KAVLNKLADLMEAHAEELAL-LETLDTG-KPIRHSLR--DDIPGAARAIRWYAEAIDKVY 139
Query: 628 G 628
G
Sbjct: 140 G 140
>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional.
Length = 400
Score = 30.2 bits (68), Expect = 4.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 249 SNHKVAILGAGIIGLSTALELQRR 272
+ I GAG+ GLS ALEL R
Sbjct: 1 TRGSPLIAGAGVAGLSAALELAAR 24
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 30.1 bits (68), Expect = 4.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 248 GSNHKVAILGAGIIGLSTALELQR 271
V I+GAG+ GLS A EL++
Sbjct: 5 PKTADVIIVGAGLAGLSAAYELKK 28
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional.
Length = 479
Score = 30.0 bits (67), Expect = 4.8
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 598 LRPYRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFS 654
L ++ VR+E+D G + P + YG+ ++ V F G K+ E I +F+
Sbjct: 4 LTEVKNGVRIEKDFLGEKEV----PNYAYYGVQTMRAVENFPITGYKIHEGLIKAFA 56
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 30.0 bits (68), Expect = 5.1
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGL------FEPSPNFM 305
K+ I+G G+S A + +R ++TV +K D S GA GL F PN M
Sbjct: 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVY-EK--TDIVSFGACGLPYFVGGFFDDPNTM 58
>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 403
Score = 29.9 bits (68), Expect = 5.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAA 295
V I G G +GL+ A+ L++ P+ VTV+ + D A
Sbjct: 4 VVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRA 46
>gnl|CDD|184976 PRK15015, PRK15015, carbon starvation protein A; Provisional.
Length = 701
Score = 29.9 bits (67), Expect = 5.4
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 211 QVTKVNPKSQTNATQNGDKKGLFFIPTQSCPANPKVMGSNHKVAILGAG 259
V V+P T A ++ D GL ++PT + KV+ +H AI GAG
Sbjct: 59 NVLAVDPTRMTPAVRHND--GLDYVPT-----DKKVLFGHHFAAIAGAG 100
>gnl|CDD|235821 PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.
Length = 304
Score = 29.8 bits (68), Expect = 5.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 282
K+AILGAG IG L + DVT++A
Sbjct: 2 KIAILGAGAIGGLFGAALAQ--AGHDVTLVA 30
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 29.7 bits (67), Expect = 5.7
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284
VAI+GAG GL+ A L++ VI +K
Sbjct: 10 DVAIIGAGQSGLAAAYALKQAGV--PDFVIFEK 40
>gnl|CDD|236203 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed.
Length = 765
Score = 29.9 bits (68), Expect = 5.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
++ +G G GL AL ++ P +VTV+
Sbjct: 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVV 31
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 29.7 bits (67), Expect = 6.4
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
V ++GAG+ GL+ A L R VTV+
Sbjct: 5 DVVVIGAGLNGLAAAALLARA--GLKVTVL 32
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional.
Length = 373
Score = 29.7 bits (67), Expect = 6.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 252 KVAILGAGIIGLSTALELQR 271
K+AI+GAGI GL+ A LQ
Sbjct: 2 KIAIIGAGIGGLTAAALLQE 21
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 29.4 bits (67), Expect = 7.1
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVIA 282
V ++G G+ GL+ AL V ++A
Sbjct: 5 VLVIGGGLAGLTAALAAAEA--GKRVALVA 32
>gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 438
Score = 29.4 bits (66), Expect = 7.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
V ++G GI GLS L++ P V VI
Sbjct: 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVI 38
>gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated.
Length = 308
Score = 29.2 bits (66), Expect = 7.2
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 12/60 (20%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLET 311
VAI+GAG+IG + A+ R +V + D +P ++ LE
Sbjct: 4 SVAIIGAGLIGRAWAIVFARA--GHEVRLW----------DADPAAAAAAPAYIAGRLED 51
>gnl|CDD|176199 cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase.
NAD-linked ribitol-5-phosphate dehydrogenase, a member
of the MDR/zinc-dependent alcohol dehydrogenase-like
family, oxidizes the phosphate ester of
ribitol-5-phosphate to xylulose-5-phosphate of the
pentose phosphate pathway. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has a
catalytic role, while structural zinc aids in stability.
Length = 341
Score = 29.3 bits (66), Expect = 7.3
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI-ADKFNMD 288
+ + + G G +G TAL L++ +P + V + +D
Sbjct: 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLD 203
>gnl|CDD|223867 COG0796, MurI, Glutamate racemase [Cell envelope biogenesis, outer
membrane].
Length = 269
Score = 29.1 bits (66), Expect = 7.5
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
+ + +G+ GLS E++R+ P+ D+ + D
Sbjct: 7 PIGVFDSGVGGLSVLREIRRQLPDEDIIYVGD 38
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest light
for photosynthesis, and dissipate excess light energy
absorbed by the antenna pigments. The cyclisation of
lycopene (psi, psi-carotene) is a key branch point in
the pathway of carotenoid biosynthesis. Two types of
cyclic end groups are found in higher plant carotenoids:
the beta and epsilon rings. Carotenoids with two beta
rings are ubiquitous, and those with one beta and one
epsilon ring are common; however, carotenoids with two
epsilon rings are rare.
Length = 374
Score = 29.2 bits (66), Expect = 7.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ I+GAG+ GL AL L++ P V +I
Sbjct: 2 LVIVGAGLAGLLLALRLRQARPGLRVLLI 30
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 29.2 bits (66), Expect = 8.2
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP 300
V I+G G GL AL L R V ++ ++ T+ AG
Sbjct: 4 VLIVGGGPAGLMLALLLARA--GVRVVLV-ERHA-TTSVLPRAGGLNQ 47
>gnl|CDD|132259 TIGR03215, ac_ald_DH_ac, acetaldehyde dehydrogenase (acetylating).
Members of this protein family are acetaldehyde
dehydrogenase (acetylating), EC 1.2.1.10. This enzyme
oxidizes acetaldehyde, using NAD(+), and attaches
coenzyme A (CoA), yielding acetyl-CoA. It occurs as a
late step in the meta-cleavage pathways of a variety of
compounds, including catechol, biphenyl, toluene,
salicylate, etc.
Length = 285
Score = 28.8 bits (65), Expect = 8.6
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 252 KVAILGAGIIGLSTALELQR-----------RFPNCDVTVIADKFNMDTTSDGAAGLFE 299
KVAI+G+G IG +L R P D A + + T+++G GL
Sbjct: 3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLA 61
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 29.0 bits (65), Expect = 9.6
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 213 TKVNPKSQTNATQNGDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALE 268
+ +T T K +P + + + I+GAG G+S A+E
Sbjct: 33 SSSKESEKTEVTSGASKTSY---------TDPSELKDKYDIVIVGAGGAGMSAAIE 79
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated.
Length = 428
Score = 28.9 bits (65), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 288 DTTSDGAAGLFEPSPNFMG 306
+T S+G AG F P FMG
Sbjct: 294 ETISNGEAGCFMHGPTFMG 312
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.410
Gapped
Lambda K H
0.267 0.0851 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,975,129
Number of extensions: 3619274
Number of successful extensions: 3184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3183
Number of HSP's successfully gapped: 103
Length of query: 728
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 624
Effective length of database: 6,324,786
Effective search space: 3946666464
Effective search space used: 3946666464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.8 bits)