RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16975
(728 letters)
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 111 bits (279), Expect = 8e-27
Identities = 32/158 (20%), Positives = 61/158 (38%), Gaps = 11/158 (6%)
Query: 246 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP---SP 302
+M S +V +LG+G+IGLS+AL L R+ V ++A D +S A + +P
Sbjct: 2 MMHSQKRVVVLGSGVIGLSSALILARK--GYSVHILARDLPEDVSSQTFASPWAGANWTP 59
Query: 303 NFMGPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYK 362
D +W ++ + L+ + G + H+ K + P Y+
Sbjct: 60 FMTLTDGPRQAKWEESTFKKWVELVPT-GHAMWLKGTRRFAQNEDGLLGHWYKDITPNYR 118
Query: 363 RMSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
+ E G+ TL + + + ++
Sbjct: 119 PLPSSECP-----PGAIGVTYDTLSVHAPKYCQYLARE 151
Score = 73.2 bits (179), Expect = 5e-14
Identities = 38/184 (20%), Positives = 54/184 (29%), Gaps = 57/184 (30%)
Query: 541 GAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPE------ILAAPVEKV 594
AYIIP GG V GGT G+ L V+ + IL + P I V +
Sbjct: 223 PAYIIPRPGGEVICGGTYGVGDWDLSVNPETVQRILKHCLRLDPTISSDGTIEGIEVLRH 282
Query: 595 WVGLRPYRHH-VRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSF 653
VGLRP R RVE + T P+ G
Sbjct: 283 NVGLRPARRGGPRVEAERIVLPLDRTKSPLSLGRGSARAA-------------------- 322
Query: 654 SELGSEYNTIFNCTGLGARTLCNDMHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVS 713
+ + + +VH YG G + G+A
Sbjct: 323 ------------------------------KEKEVTLVHAYGFSSAGYQQSWGAAEDVAQ 352
Query: 714 VFEQ 717
+ ++
Sbjct: 353 LVDE 356
Score = 55.1 bits (132), Expect = 4e-08
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 634 FVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGLGARTLC--NDMHVIPVRGQTIRI 690
+ G + ++S + + + N TGLGA+++ +D P+RGQT+ +
Sbjct: 148 LARELQKLGATFERRTVTSLEQAFDGADLVVNATGLGAKSIAGIDDQAAEPIRGQTVLV 206
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET:
FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 106 bits (265), Expect = 5e-25
Identities = 45/157 (28%), Positives = 85/157 (54%), Gaps = 15/157 (9%)
Query: 252 KVAILGAGIIGLSTALELQRRFPN----CDVTVIADKFNMDTTSDGAAGLFEPSPNFMGP 307
+V ++GAG+IGLSTAL + R+ + D+ V AD+F TT+D AAGL++P P
Sbjct: 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPY--LSDP 59
Query: 308 DLETTKEWIRYSYDHYAGLL----SENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKR 363
+ +W + ++D+ + +EN G+ +I+GYNL + K + +++
Sbjct: 60 NNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEA---IPDPSWKDTVLGFRK 116
Query: 364 MSEEELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQK 400
++ EL D+ YG + ++L++ + +L W ++
Sbjct: 117 LTPRELDM--FPDYGYGWFHTSLILEGKNYLQWLTER 151
Score = 62.0 bits (150), Expect = 2e-10
Identities = 47/280 (16%), Positives = 85/280 (30%), Gaps = 36/280 (12%)
Query: 451 HDHYAGLLSENCGVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKY 510
H +EN G+ +I+GYNL + K + +++++ EL D+ Y
Sbjct: 76 LSHVHSPNAENLGLFLISGYNLFHEA---IPDPSWKDTVLGFRKLTPRELDM--FPDYGY 130
Query: 511 GIYMSTLVIPNRIFLPWCMQKNFASLVRLAGAYII-------PSYGGLVTLGGTQDYGNA 563
G + ++L++ + +L W ++ V+ + +V G
Sbjct: 131 GWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVNCTG---VWAG 187
Query: 564 RLGVDRFDSRAILNRTAAVRPEILAAPVEKVWVGLRPYRHHVRVERD----LTGAAQYLT 619
L D + + V + + Y + L G Q
Sbjct: 188 ALQRDP-LLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYIIPGTQTVTLGGIFQLGN 246
Query: 620 WYPVFKVYGITSVLFVHRFKAAGGKVIEKYISSFSELGSEYNTIFNCTGL--GARTLCND 677
W I + I TG + +
Sbjct: 247 WSE--------------LNNIQDHNTIWEGCCRLEPTLKNARIIGERTGFRPVRPQIRLE 292
Query: 678 MHVIPVRGQTIRIVHNYGHGGYGVTSAPGSARCAVSVFEQ 717
+ ++HNYGHGGYG+T G A A +F +
Sbjct: 293 REQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGR 332
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 55.3 bits (134), Expect = 3e-08
Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 15/154 (9%)
Query: 242 ANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPS 301
A + M +++ ++G GIIG + A L + N + + T+ AAG+
Sbjct: 9 ARIRAMKRHYEAVVIGGGIIGSAIAYYLAKE--NKNTALFESGTMGGRTTSAAAGML--G 64
Query: 302 PNFMGPDLETTKEWIRYSYDHYAGLLSE-------NCGVQVINGYNLAKSEKQCAENHYL 354
+ + + ++ +S Y GL E + + LA SE+ + +
Sbjct: 65 AHAECEERDAFFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQM 124
Query: 355 KPVLPVYKRMSEEELAEIGPG---DWKYGIYMST 385
+ V S+EE+ E P D ++
Sbjct: 125 DDLDSV-SWYSKEEVLEKEPYASGDIFGASFIQD 157
Score = 41.8 bits (99), Expect = 5e-04
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 537 VRLAGAYIIPSYGGLVTLGGTQDYGNARLGVDRFDSRAILNRTAAVRPEILAAPVEKVWV 596
+ YI+P G + +G T G+ D +++ + + P I V++ W
Sbjct: 253 LYHDHCYIVPRKSGRLVVGATMKPGDWSETPDLGGLESVMKKAKTMLPAIQNMKVDRFWA 312
Query: 597 GLRPY 601
GLRP
Sbjct: 313 GLRPG 317
Score = 29.1 bits (66), Expect = 5.1
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 692 HNYGHGGYGVTSAPGSARC 710
GH G+ AP +
Sbjct: 336 FAAGHFRNGILLAPATGAL 354
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 2e-07
Identities = 73/484 (15%), Positives = 130/484 (26%), Gaps = 186/484 (38%)
Query: 118 NAYKA-GALPTILTRKHAVIL---CSDGKNETF-----QGSGSQVSK---------RSKV 159
N A +K L +G + QG+ + V
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 160 SDL-SSETETLKPSGPLRNEADLSWEVSVSVQQVTQTDEKVTPNLE-------------I 205
DL ETL +A+ + +++ + + TP+ + +
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN-TPDKDYLLSIPISCPLIGV 243
Query: 206 KQL-NVQVTKVNPKSQTNATQNGDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLS 264
QL + VT A G G + + H ++ A I +
Sbjct: 244 IQLAHYVVT---------AKLLGFTPGELRSYLKGA--------TGHSQGLVTAVAIAET 286
Query: 265 T-----------ALEL--------QRRFPNCDV--TVIADKFNMDTTSDGAAGLFEPSPN 303
A+ + +PN + +++ D + + G PSP
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED------SLENNEG--VPSP- 337
Query: 304 FM----GPDLETTKEWIRYSYDHYAGLLSENCGVQV--ING-------------YNLAKS 344
M E ++++ + H L V++ +NG Y L +
Sbjct: 338 -MLSISNLTQEQVQDYVNKTNSH----LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 345 -EKQCAEN-----------------------------HYLKPVLP-VYKRMSEEELAEIG 373
K A + H L P + K + + +
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV-SFN 451
Query: 374 PGDWKYGIYMSTLVIPNRIFLPWCMQKDGPSNLGERPSTLSVELYHYNRDSLTVVRGPLH 433
D + +Y T DG S+L ++S + ++R P+
Sbjct: 452 AKDIQIPVY-DT--------------FDG-SDLRVLSGSISERIVD------CIIRLPVK 489
Query: 434 -EKVSSGPRTCAMQRAMQH--DHYAG-------LLSEN---CGVQVINGYNLAKSE---- 476
E + T H D G L N GV+VI L +
Sbjct: 490 WETTTQFKAT--------HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Query: 477 --KQ 478
KQ
Sbjct: 542 GFKQ 545
Score = 47.0 bits (111), Expect = 3e-05
Identities = 37/225 (16%), Positives = 64/225 (28%), Gaps = 72/225 (32%)
Query: 193 TQTDEKVTPNLEIKQLNVQVTKV---NPKSQTNATQNGDKKGLFFIPTQSCPA------- 242
T D K+ K++N T + K +ATQ TQ PA
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF----------TQ--PALTLMEKA 1742
Query: 243 ------------NPKVM-G-SNHKVAILG--------AGIIGLSTALEL--QR-RFPNCD 277
G S LG A ++ + + +E+ R
Sbjct: 1743 AFEDLKSKGLIPADATFAGHS------LGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 278 VTVIADKFNMDTTSDGAAGLFEPSPNFMGPDL--ETTKEWIRYSYDHYAGLLS---ENC- 331
V D G+ +P + E + + L+ N
Sbjct: 1797 VPR-------DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 332 GVQ-VINGYNLAKSEKQCAENHYLK----PVLPVYKRMSEEELAE 371
Q V G +L + +++K ++ + K +S EE+
Sbjct: 1850 NQQYVAAG-DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 32.7 bits (74), Expect = 0.55
Identities = 34/213 (15%), Positives = 57/213 (26%), Gaps = 61/213 (28%)
Query: 534 ASLVRLAGAYIIPSY-GGLVTLGGTQDYGNA-RLGVDRFDSRAILNRT-----AAVRPEI 586
+ L G ++ Y LV + L + F+ L AA +
Sbjct: 55 TTPAELVGKFL--GYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGNDIHALAAKLLQE 111
Query: 587 LAAPVEKVWVGLRPYRHHVRVERDLTGAAQYLTWYPVFKVYGITSVLFVHRFKAA----- 641
+ K ++ Y A+ + P K S LF +A
Sbjct: 112 NDTTLVKTKELIKNYI-----------TARIMAKRPFDKKS--NSALF----RAVGEGNA 154
Query: 642 ------GGK-VIEKYISSFSELGSEYNT----IFNCTGLGARTLCNDMHVIPVRGQTIRI 690
GG+ + Y F EL Y T + + A TL + T+
Sbjct: 155 QLVAIFGGQGNTDDY---FEELRDLYQTYHVLVGDLIKFSAETLS------ELIRTTLDA 205
Query: 691 VHNYGHG------GYGVTSAPGS---ARCAVSV 714
+ G ++ P +S
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 2e-07
Identities = 81/604 (13%), Positives = 155/604 (25%), Gaps = 217/604 (35%)
Query: 7 FGVWLIEEFLIGLASGS---HI-KVPGVEMIPVEAFRLV------PHSSGSYIVVDGEVL 56
F +++ + S HI RL V + +
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAV---SGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 57 DYG----PIQAE-IFPGLIERTVTTEYLPPQNR-KEERQGRRKPAVPRTNM------CLE 104
+Y PI+ E P ++ T Y+ ++R + Q K V R L
Sbjct: 90 NYKFLMSPIKTEQRQPSMM----TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 105 KTSPPGGNQTPRPNAY-----KAGALPTILTRKHAVILCSDGKNETFQGSGS---QVSKR 156
+ RP G+ T + A+ +C K + +
Sbjct: 146 EL---------RPAKNVLIDGVLGSGKTWV----ALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 157 SKVSDLSSETETL--KPSGPLRNEADLSWEVSVSVQQVTQTD-----EKVTPN----LE- 204
+ + + L + + +D S + + + + K N L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 205 ------IKQLNVQ----VT--------KVNPKSQTNATQNGDKKGL-------FF----- 234
N+ +T ++ + T+ + + L
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 235 -----IPTQSCPANPKVMGSNHKVAILGA---------------------GIIGLS-TAL 267
+P + NP+ ++I+ II S L
Sbjct: 313 CRPQDLPREVLTTNPRR------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 268 ---ELQRRFPNC------------------------DVTVIADKFNMDTTSDGAAGLFEP 300
E ++ F DV V+ +K + L E
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-------KYSLVEK 419
Query: 301 SPNFMGPDLETTKEWIRYSYDHYAGLLSENCGV-----QVINGYNLAKSEKQCAENHYLK 355
P KE Y L + +++ YN+ K+ + +
Sbjct: 420 QP----------KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS---DDLIP 466
Query: 356 PVLPVY------KRMSEEELAEIGPGDWKYGIYMSTLVIPNRIFL--PWCMQK---DGPS 404
P L Y + E E + ++ +FL + QK D +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPE------RMTLF-------RMVFLDFRFLEQKIRHDSTA 513
Query: 405 --NLGERPSTLS-VELY---------HYNR---DSLTVVRGPLHEKVSSGPRTCAMQRAM 449
G +TL ++ Y Y R L + E + T ++ A+
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI-EENLICSKYTDLLRIAL 572
Query: 450 QHDH 453
+
Sbjct: 573 MAED 576
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 49.7 bits (118), Expect = 2e-06
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVI--ADKF--NMDTTSDGAAGLFEPSPNFMG 306
V +LG GI GL+ + L R V ++ +++ + + +FE P +
Sbjct: 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIR 62
Query: 307 PDLETTKEWI 316
P +
Sbjct: 63 PAGALGARTL 72
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 49.6 bits (118), Expect = 2e-06
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
S+ ++ I+G GI GL+ A +R FP+ ++T++
Sbjct: 3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLL 35
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 47.4 bits (113), Expect = 1e-05
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
V ++G G+ G++TA L+ P+ +T+I
Sbjct: 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLI 33
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 46.7 bits (110), Expect = 2e-05
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 241 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI--ADKF--NMDT-TSDGAA 295
A S +VA++GAG+ GL+ A +L+ +VTV K + + + DG
Sbjct: 4 SAGEDKHSSAKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKAGGKLRSVSQDGL- 60
Query: 296 GLFEPSPNFMGPDLETTKEWIR 317
+++ N M I
Sbjct: 61 -IWDEGANTMTESEGDVTFLID 81
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 46.4 bits (110), Expect = 2e-05
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF---NMDTTSDGAAGLF 298
+ + + I+GAG G STAL L RR +VTV+ D + + + + +
Sbjct: 3 VTKSSSLLIVGAGTWGTSTALHLARR-GYTNVTVL-DPYPVPSAISAGNDVNKVI 55
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 46.3 bits (110), Expect = 3e-05
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRF-PNCDVTVI 281
M + V ILGAG G+ A E++ +VT+I
Sbjct: 1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLI 36
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 45.5 bits (108), Expect = 4e-05
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF---NMDTTSDGAAGLF 298
M ++ V ++G G +GL+TA ++ R V V+ ++ N + + GA +
Sbjct: 1 MTESYDVVVVGGGPVGLATAWQVAER--GHRVLVL-ERHTFFNENGGTSGAERHW 52
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 44.8 bits (105), Expect = 6e-05
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
K+ ++GAG GL A +L++ P + ++
Sbjct: 2 KILVIGAGPAGLVFASQLKQARPLWAIDIV 31
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 44.5 bits (105), Expect = 9e-05
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ + ++AI+GAG GL+ + L++ D T++
Sbjct: 3 ISKDSRIAIIGAGPAGLAAGMYLEQAG-FHDYTIL 36
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 44.3 bits (105), Expect = 1e-04
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 280
+ S+ VAI+G G +GL+ A LQ+ DV+V
Sbjct: 23 LLSDKNVAIIGGGPVGLTMAKLLQQN--GIDVSV 54
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 44.0 bits (104), Expect = 1e-04
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ KV ++G G G + A ++ P+ +VT+I
Sbjct: 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLI 33
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 42.7 bits (100), Expect = 4e-04
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ VA++G GI GL+ A L+ R D ++
Sbjct: 15 TGMNVAVVGGGISGLAVAHHLRSRGT--DAVLL 45
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 42.6 bits (100), Expect = 4e-04
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 248 GSNHKVAILGAGIIGLSTALELQRRFPN----CDVTVI 281
V I+G GI GL+ A +++ ++T++
Sbjct: 3 DGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLV 40
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 42.3 bits (100), Expect = 4e-04
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 247 MGSNH-KVAILGAGIIGLSTALELQRRFPNCDVTV 280
M ++A++G I GL+ AL L+ DV V
Sbjct: 1 MSPTTDRIAVVGGSISGLTAALMLRDA--GVDVDV 33
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 42.3 bits (100), Expect = 5e-04
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 238 QSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 280
+ K ++GAGI GLS A+ L++ D V
Sbjct: 11 HHSSGENLYFQGHMKAIVIGAGIGGLSAAVALKQS--GIDCDV 51
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 41.9 bits (99), Expect = 6e-04
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 280
M + I GAGI GLS AL L + VT+
Sbjct: 1 MSEPIDILIAGAGIGGLSCALALHQA-GIGKVTL 33
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 42.0 bits (99), Expect = 6e-04
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285
+ I+G+G +G + R +V + D
Sbjct: 5 LIIIGSGSVGAAAGYYATRA--GLNVLMT-DAH 34
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 41.5 bits (98), Expect = 8e-04
Identities = 16/150 (10%), Positives = 50/150 (33%), Gaps = 25/150 (16%)
Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI--ADKFNMDTTSDGAAGLFEPSPNFMG 306
++ V ++GAG +G++ +L ++ ++ D + + + G +
Sbjct: 2 THFDVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAFDPPHTNGSHHGDTRII----RHAY 55
Query: 307 PDLETTKEWIRYSYDHYAGLLSENCGVQVI--NGYNLAKSEKQCAENHYLKPVLPV---- 360
+ S + + L + ++ G + + E+ ++ +
Sbjct: 56 GEGREYVPLALRSQELWYE-LEKETHHKIFTKTGVLVFGPK---GESAFVAETMEAAKEH 111
Query: 361 ---YKRMSEEELAEIGPG----DWKYGIYM 383
+ +E+ + PG + I+
Sbjct: 112 SLTVDLLEGDEINKRWPGITVPENYNAIFE 141
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 41.4 bits (97), Expect = 8e-04
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+H V +LG G GL +A ELQ+ VTV+
Sbjct: 11 SHSVVVLGGGPAGLCSAFELQKA--GYKVTVL 40
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 41.4 bits (98), Expect = 9e-04
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI--ADKFNMDTTS 291
M ++ ++GAG++GL+ A L +V V A+ T+S
Sbjct: 1 MSTDIDCIVIGAGVVGLAIARALAAG--GHEVLVAEAAEGIGTGTSS 45
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 40.7 bits (94), Expect = 0.001
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 239 SCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284
S P+ ++ I+GAG GL L L++ + DVTV D+
Sbjct: 11 SSGLVPRGSHMKKRIGIVGAGTAGLHLGLFLRQH--DVDVTVYTDR 54
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 40.1 bits (93), Expect = 0.001
Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 27/106 (25%)
Query: 333 VQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLV----- 387
+QV Y+ ++ ++ ++ V P+ + +S EL++ K+ LV
Sbjct: 120 IQVN--YS-SEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKF------LVIAYEP 170
Query: 388 -------IPNR--IFLPWCMQKDGPSNLGERPSTLSVELYHYNRDS 424
+P +F + + E + ++ S
Sbjct: 171 FENIAIELPPNEILFSENNDMDNNNDGVDELNKKCT----FWDAIS 212
Score = 35.5 bits (81), Expect = 0.040
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 21/71 (29%)
Query: 464 VQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPGDWKYGIYMSTLV----- 518
+QV Y+ ++ ++ ++ V P+ + +S EL++ K+ LV
Sbjct: 120 IQVN--YS-SEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKF------LVIAYEP 170
Query: 519 -------IPNR 522
+P
Sbjct: 171 FENIAIELPPN 181
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 40.4 bits (93), Expect = 0.002
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEP---SPNFMGPDL 309
+ ++GAG +G + A L++ P + ++ ++ ++ A + P + +
Sbjct: 39 IVVIGAGRMGAACAFYLRQLAPGRSLLLV-EEG--GLPNEEGATILAPGVWTAQDIPAGQ 95
Query: 310 ETTKEWIRYSYDHYAG 325
E EW R G
Sbjct: 96 EAQAEWTREQLLGALG 111
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 40.0 bits (94), Expect = 0.002
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTV 280
+ + G G GL+ A+ L++ DV +
Sbjct: 13 RAEVAGGGFAGLTAAIALKQN--GWDVRL 39
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 40.2 bits (94), Expect = 0.002
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 248 GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ V I+GAG+ GLS A L VTV+
Sbjct: 31 SNPKHVVIVGAGMAGLSAAYVLAGA--GHQVTVL 62
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 39.7 bits (93), Expect = 0.003
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 252 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADK 284
KV +LG L+ A L+R + DV VI
Sbjct: 3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKS 36
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 39.9 bits (92), Expect = 0.003
Identities = 37/284 (13%), Positives = 81/284 (28%), Gaps = 42/284 (14%)
Query: 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKF-----NMDTTSDGAAGLFEPSPNF 304
K+ I+GAG GL A+ L + + + D ++ +
Sbjct: 9 TPKIVIIGAGPTGLGAAVRLTEL--GYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHV 66
Query: 305 MGPDLETTKEWI-----------RYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAENHY 353
+ + + + R S+ G N + L + +++ +
Sbjct: 67 IFSHYQYFDDVMDWAVQGWNVLQRESWVWVRGRWVPY--PFQNNIHRLPEQDRKRCLDEL 124
Query: 354 LKPVLPVYKRMSE-----------EELAEIGPGDWKYGIYMSTLVIPNRIFLPWCMQKDG 402
++ Y E +A+I + + ++ P + W ++
Sbjct: 125 VRSHARTYTEPPNNFEESFTRQFGEGIADIFMRPYNFKVWAVP---PCLMSTEWVEERVA 181
Query: 403 PSNLGERPSTLSVELYHYNRDSLTVVRGPLHEKVSSGPRTCAMQRAMQHDHYAGLLSENC 462
P +L + R P T + +A++ + L+ N
Sbjct: 182 PVDLERIRRNIQENRDDLGWGPNATFRFPQ------RGGTGIIYQAIKEKLPSEKLTFNS 235
Query: 463 GVQVINGYNLAKSEKQCAENHYLKPVLPVYKRMSEEELAEIGPG 506
G Q I AK N + + + + L + G
Sbjct: 236 GFQAIAIDADAK--TITFSNGEVVSYDYLISTVPFDNLLRMTKG 277
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 39.9 bits (92), Expect = 0.003
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ V ++GAG GL A L + ++
Sbjct: 10 SVDVLVIGAGPTGLGAAKRLNQI-DGPSWMIV 40
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 39.0 bits (91), Expect = 0.005
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVI 281
++GAG++GL+ A L+ V V+
Sbjct: 26 YVVVGAGVVGLAAAYYLKVW-SGGSVLVV 53
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 38.8 bits (91), Expect = 0.006
Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 29/113 (25%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFN----MDTTSDGAAGLFEPSPNF-- 304
+KVAI+G G IG TA+ L + + F +D++ A GL
Sbjct: 495 NKVAIIGCGGIGFDTAMYLSQP--GESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPR 552
Query: 305 --------------MGPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAK 343
G L T WI H L + GV++I G + K
Sbjct: 553 SPRQIVMLQRKASKPGQGLGKTTGWI-----HRTTL--LSRGVKMIPGVSYQK 598
Score = 30.8 bits (70), Expect = 1.7
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 12/53 (22%)
Query: 239 SCPANPKVM----------GSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
SC NP+ +A++GAG GL+ A+ R VT+
Sbjct: 352 SCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFAINAAAR--GHQVTLF 402
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 38.4 bits (88), Expect = 0.007
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 8/41 (19%)
Query: 241 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
P PK ++ I+GAGI GL L R DVT++
Sbjct: 41 PGPPK------RILIVGAGIAGLVAGDLLTRA--GHDVTIL 73
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 37.7 bits (88), Expect = 0.011
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ ++GAG+ GL L R ++ V+
Sbjct: 2 RAVVVGAGLGGLLAGAFLARN--GHEIIVL 29
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 38.0 bits (89), Expect = 0.011
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
++ I+G G GL+TA L + +V V+
Sbjct: 20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVL 52
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 37.8 bits (87), Expect = 0.012
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 236 PTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
Q+ N + I+GAG G A L V ++
Sbjct: 15 TEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASS--GQRVLIV 58
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich
domain 2, protein-ADP COM transferase; HET: ADP; 2.30A
{Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Length = 337
Score = 37.3 bits (87), Expect = 0.015
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 5 HHFGVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAE 64
+ + + + G H K P V +A + + + VDGE P
Sbjct: 247 EKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISS-FTDLQLNVDGEYGGKLPANFL 305
Query: 65 IFPGLIERTVTTEYLPPQNRKEE 87
I+ V + P EE
Sbjct: 306 NLERHID--V---FAPNDIVNEE 323
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 37.3 bits (87), Expect = 0.016
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
S+ V ++GAG G+ A EL+ +V V+
Sbjct: 10 SDAAVIVVGAGPAGMMLAGELRLA--GVEVVVL 40
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 37.0 bits (85), Expect = 0.018
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ I+GAG GLS A L P+ +T++
Sbjct: 82 IVIVGAGSCGLSAAYVLSTLRPDLRITIV 110
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling; HET:
NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 36.9 bits (85), Expect = 0.019
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAA 295
M KVAI+G+G IG +++ R ++ + D SDG A
Sbjct: 1 MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGI---DAASDGLA 46
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 37.1 bits (86), Expect = 0.022
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
M + V ++G GI G++ A L +V V+
Sbjct: 1 MSNKCDVVVVGGGISGMAAAKLLHDS--GLNVVVL 33
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 37.2 bits (84), Expect = 0.022
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 249 SNHKVAILGAGIIGLSTALELQR 271
N+++AI+G G G++ EL R
Sbjct: 55 GNYRIAIVGGGAGGIAALYELGR 77
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 36.7 bits (84), Expect = 0.023
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVI 281
V I+GAG GLS A + + P+ V +I
Sbjct: 68 VIIVGAGSSGLSAAYVIAKNRPDLKVCII 96
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 36.9 bits (86), Expect = 0.025
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
S+ V ++GAG GL A EL+ DV V+
Sbjct: 11 SDASVIVVGAGPAGLMLAGELRLG--GVDVMVL 41
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET:
TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 37.0 bits (84), Expect = 0.025
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 252 KVAILGAGIIGLSTALELQRRFPN-CDVTVIADKFNMDTTSDGAAGLFEPSPNFMGPDLE 310
V I+G G G TA L+ F + DVT++ N+ G A +F
Sbjct: 4 SVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESG-NVRRIGVGEATF-STVRHFFDYLGL 61
Query: 311 TTKEWIRYSYDHY 323
+EW+ Y
Sbjct: 62 DEREWLPRCAGGY 74
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 36.2 bits (84), Expect = 0.034
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 241 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+N V ++G G +GL A EL+ V+
Sbjct: 40 NSNADDAALTTDVVVVGGGPVGLMLAGELRAG--GVGALVL 78
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 36.0 bits (84), Expect = 0.035
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 31/100 (31%)
Query: 208 LNVQVTKVNPKSQTNATQNG-----DKKGLFFIPTQSCPANPKVMGSNH----------- 251
+ T ++P ++ ++G +K I + S KV ++
Sbjct: 81 TSEFATSIDPNNKLVTLKSGEKIKYEK---LIIASGSIANKIKVPHADEIFSLYSYDDAL 137
Query: 252 ----------KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
K I+G GI+G+ A + ++
Sbjct: 138 KIKDECKNKGKAFIIGGGILGIELAQAIIDS--GTPASIG 175
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 35.8 bits (81), Expect = 0.040
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 296
+AI+G GI GLS A L V + DK S G+ G
Sbjct: 4 PIAIIGTGIAGLSAAQALTAAGH--QVHLF-DK------SRGSGG 39
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 36.3 bits (82), Expect = 0.040
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 241 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFP-NCDVTVIAD 283
P + G K+ I+G G G A L + D+T++
Sbjct: 16 PRGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQA 59
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 35.7 bits (83), Expect = 0.051
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVI 281
V I G GI G A L R+ V V+
Sbjct: 9 VLINGCGIGGAMLAYLLGRQ--GHRVVVV 35
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB:
3l4b_A*
Length = 155
Score = 34.1 bits (79), Expect = 0.058
Identities = 8/37 (21%), Positives = 11/37 (29%), Gaps = 6/37 (16%)
Query: 245 KVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
K + I G G +G A V V+
Sbjct: 18 KSK----YIVIFGCGRLGSLIANLASSS--GHSVVVV 48
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 35.5 bits (80), Expect = 0.059
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284
+V I+GAG+ G A L+R+ + DK
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDK 35
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 35.5 bits (82), Expect = 0.059
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
VAI+GAG GL+ A L++ V VI
Sbjct: 4 LQRDVAIVGAGPSGLAAATALRKA--GLSVAVI 34
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 35.6 bits (82), Expect = 0.064
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 223 ATQNGDKKGLFFIPTQSCPANPKVMGSN-HKVAILGAGIIGLSTALELQRRFPNCDVTV 280
A++ + I P+ K+ + K+A+LGAG +S A L R D+T+
Sbjct: 159 ASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFL-ARLGYSDITI 216
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 34.5 bits (80), Expect = 0.076
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
KV I+G A + R V +I
Sbjct: 2 KVIIIGGETTAYYLARSMLSR--KYGVVII 29
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 35.1 bits (81), Expect = 0.083
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
V ILG G +G++ AL+L R V+
Sbjct: 27 TDVLILGGGPVGMALALDLAHR--QVGHLVV 55
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 34.9 bits (81), Expect = 0.093
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVIA 282
V I+G+G GLS AL L + V V++
Sbjct: 11 VLIIGSGAAGLSLALRLADQHQ---VIVLS 37
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 34.9 bits (80), Expect = 0.093
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 226 NGDKKGLFFIPTQSCPANPK--VMGSNHKVAILGAGIIGLSTALELQRRFPNCDV 278
G +G+ + S P N + V ++G G GL+ +L +
Sbjct: 13 TGLTQGVPSLGVISPPTNIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLL 67
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 32.9 bits (75), Expect = 0.094
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ ++GAG IG A L+ N VTV
Sbjct: 6 WNICVVGAGKIGQMIAALLKTS-SNYSVTVA 35
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 34.7 bits (80), Expect = 0.097
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
K ++GAG+ GL +A L + +V V
Sbjct: 2 KTVVIGAGLGGLLSAARLSKA--GHEVEVF 29
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 34.4 bits (80), Expect = 0.11
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 246 VMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
++ ++ ++G GI+G++ A EL +R +VTVI
Sbjct: 1 MLPEKSEIVVIGGGIVGVTIAHELAKRG--EEVTVI 34
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 34.5 bits (80), Expect = 0.13
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 10/62 (16%)
Query: 225 QNGDKKGLFFI-PTQSCPANPKVMG----SNHKVAILGAGIIGLSTALELQRRFPNCDVT 279
+ D+ +FF+ + + + ++ I+G G IG S A L++ + V
Sbjct: 207 EADDE--VFFVAASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTY---SVK 261
Query: 280 VI 281
+I
Sbjct: 262 LI 263
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 34.3 bits (79), Expect = 0.14
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVI 281
V ++GAG+ GLSTA+ L R+ V V+
Sbjct: 8 VLVVGAGLGGLSTAMFLARQ--GVRVLVV 34
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 34.2 bits (79), Expect = 0.14
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
++ ++G G IG + + ++ + D
Sbjct: 4 RIGVIGTGAIGKEHINRITNKLSGAEIVAVTD 35
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET: TRP
FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 34.3 bits (77), Expect = 0.15
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 252 KVAILGAGIIGLSTALELQRRF-PNCDVTVIAD 283
+ I+G G G A L R ++T+I
Sbjct: 7 NIVIVGGGTAGWMAASYLVRALQQQANITLIES 39
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 34.0 bits (78), Expect = 0.16
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 249 SNHKVAILGAGIIGLSTALELQRR 272
+HKVAI+GAG G+ A+ L+
Sbjct: 3 QHHKVAIIGAGAAGIGMAITLKDF 26
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 34.1 bits (78), Expect = 0.17
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 226 NGDKKGLFFI--PTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
NG + G I + PA+ + + S V I+G G GL+ A +L FP+ ++ +
Sbjct: 6 NGFRPGNPLIAPASPLAPAHTEAVPSQVDVLIVGCGPAGLTLAAQL-AAFPDIRTCIV-E 63
Query: 284 K 284
+
Sbjct: 64 Q 64
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 34.2 bits (77), Expect = 0.18
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 244 PKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
P KV I+G+G+ GL+ A +LQ DVT++
Sbjct: 272 PLPTKKTGKVIIIGSGVSGLAAARQLQSFG--MDVTLL 307
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 33.8 bits (77), Expect = 0.20
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 247 MGSNHK---VAILGAGIIGLSTALELQRRFPNCDVTVI-ADKF 285
M + + + ++G G G + A + R V ++ + F
Sbjct: 1 MSTRPEVFDLIVIGGGPGGSTLASFVAMR--GHRVLLLEREAF 41
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 33.6 bits (77), Expect = 0.21
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ ++G G GL A +L V ++
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNA--GKKVLLL 30
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 33.5 bits (76), Expect = 0.22
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ K+ I+GAG G +L + V +I
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEK--GHQVHII 32
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 33.6 bits (76), Expect = 0.22
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ KV I+GAGI GL A L + D V+
Sbjct: 7 AKKKVIIIGAGIAGLKAASTLH-QNGIQDCLVL 38
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 33.5 bits (77), Expect = 0.25
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
K I+G G+IG L +V + D
Sbjct: 25 KAGIVGIGMIGSDHLRRLANTVSGVEVVAVCD 56
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 33.4 bits (77), Expect = 0.25
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
+ AI+G G +G A L + +
Sbjct: 10 RAAIIGLGRLGERHARHLVNKIQGVKLVAACA 41
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 33.2 bits (76), Expect = 0.30
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 245 KVMGSNHKVAILGAGIIGLSTA--LELQRRFPNCDVTVI 281
K+ + I+G G +G A L + R +V +
Sbjct: 175 KISREVKSITIIGGGFLGSELACALGRKARALGTEVIQL 213
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 33.0 bits (76), Expect = 0.31
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
++GAGI G ST L V V+
Sbjct: 11 DYLVIGAGIAGASTGYWLSAH---GRVVVL 37
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 33.1 bits (75), Expect = 0.35
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
I+G+G+ G A EL++ N V VI
Sbjct: 3 DYIIVGSGLFGAVCANELKKL--NKKVLVI 30
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 32.9 bits (75), Expect = 0.35
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 252 KVAILGAGIIGLSTALELQRR-FPNCDVTVI 281
+V ++GAG+ G+S A L D+ ++
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGIT--DLLIL 34
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 31.5 bits (72), Expect = 0.38
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
N + A++G G G S EL R +V +
Sbjct: 6 NKQFAVIGLGRFGGSIVKELHRM--GHEVLAV 35
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 33.0 bits (75), Expect = 0.38
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVI-ADKF 285
VAI+G G G L L + DVT+ F
Sbjct: 26 VAIIGGGPAGSVAGLTLHKL--GHDVTIYERSAF 57
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 32.7 bits (74), Expect = 0.41
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIA 282
M + A+LG G G + A L + V
Sbjct: 1 MIESKTYAVLGLGNGGHAFAAYLALK--GQSVLAWD 34
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 32.5 bits (75), Expect = 0.43
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
M + I+G G+ G + A E ++ + +I
Sbjct: 1 MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITA 37
Score = 31.4 bits (72), Expect = 1.2
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+V +LGAG+IG A +L + V+
Sbjct: 147 RVLLLGAGLIGCEFANDLSSG--GYQLDVV 174
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 32.9 bits (75), Expect = 0.44
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
++ ++G+G G TA L + V +
Sbjct: 8 QICVVGSGPAGFYTAQHLLKHHSRAHVDIY 37
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 32.5 bits (75), Expect = 0.46
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTV 280
V I+G G+ GLS R V
Sbjct: 4 QGKNVVIIGLGLTGLSCVDFFLAR--GVTPRV 33
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 32.4 bits (73), Expect = 0.53
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 245 KVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ M + + ++G+G GL+ A + + + V V+
Sbjct: 2 QPMTARFDLFVVGSGFFGLTIAERVATQL-DKRVLVL 37
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase,
rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol,
oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Length = 332
Score = 32.2 bits (74), Expect = 0.53
Identities = 5/33 (15%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
++ ++GA I + R +V +
Sbjct: 1 NRWGLIGASTIAREWVIGAIRA-TGGEVVSMMS 32
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 32.2 bits (73), Expect = 0.54
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTV 280
+ + K+AI+GAG GL TA L VT+
Sbjct: 3 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTL 36
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 32.6 bits (75), Expect = 0.55
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTV 280
N KV +LG G + A L + VTV
Sbjct: 8 ENKKVLVLGLARSGEAAARLLAKL--GAIVTV 37
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 32.1 bits (73), Expect = 0.72
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVI-ADKF 285
V ++GAG G A + + V ++ KF
Sbjct: 8 VLVIGAGPAGTVAASLVNKS--GFKVKIVEKQKF 39
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 31.9 bits (72), Expect = 0.80
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 239 SCPANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ + G + KV ILGAG IG + A +L+ F DV +
Sbjct: 5 VHHHHHHIEGRHMKVLILGAGNIGRAIAWDLKDEF---DVYIG 44
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 32.0 bits (73), Expect = 0.84
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDG----AAGL---FE 299
M S ++ I+GAGI+G + A EL R N ++TV+ D+ + G A GL
Sbjct: 1 MASTPRIVIIGAGIVGTNLADELVTRGWN-NITVL-DQGPL-NMPGGSTSHAPGLVFQTN 57
Query: 300 PSPNFMGPDLETTKEWIRYSYDHYAGL 326
PS + +Y+ + L
Sbjct: 58 PSKT--------MASFAKYTVEKLLSL 76
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 31.8 bits (73), Expect = 0.86
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGAAG 296
+ I+G+GI GLS + L+R + K ++ A G
Sbjct: 2 IYIIGSGIAGLSAGVALRRA---GKKVTLISKRIDGGSTPIAKG 42
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 31.8 bits (73), Expect = 0.89
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 30/99 (30%)
Query: 208 LNVQVTKVNPKSQTNATQNG----DKKGLFFIPTQSCPANPKVMGSNH------------ 251
L + ++ + T+ G D + T + P++ G +
Sbjct: 79 LAEEAKLIDRGRKVVITEKGEVPYDT---LVLATGARAREPQIKGKEYLLTLRTIFDADR 135
Query: 252 ---------KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ I+G G IGL A L V +I
Sbjct: 136 IKESIENSGEAIIIGGGFIGLELAGNLAEA--GYHVKLI 172
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 31.7 bits (72), Expect = 0.89
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
+ I G G G R P+ + D
Sbjct: 4 RFGICGLGFAGSVLMAPAMRHHPDAQIVAACD 35
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 31.5 bits (71), Expect = 0.96
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKFNM 287
VAI+G G G+ ALELQ+ V +I ++ +
Sbjct: 110 DVAIIGGGPAGIGAALELQQ---YLTVALIEERGWL 142
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE,
unknown function, cytoplasm, NADP, oxidoreductase; 1.90A
{Bacillus subtilis}
Length = 307
Score = 31.4 bits (72), Expect = 1.00
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 282
K+ I+G G +GL A L DVTV+
Sbjct: 4 KIGIIGGGSVGLLCAYYLSL---YHDVTVVT 31
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA,
ketopantoate reductase, rossman fold, monomer, APO,
oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7
c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Length = 291
Score = 31.1 bits (71), Expect = 1.0
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 282
K+ +LG G +G L ++ +V
Sbjct: 2 KITVLGCGALGQLWLTALCKQ--GHEVQGWL 30
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 31.4 bits (70), Expect = 1.2
Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 17/122 (13%)
Query: 241 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVT---------VIADKFNMDTTS 291
P KV I+G+G+ GL+ A +LQ + + V +
Sbjct: 98 RIKPLPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVAD 157
Query: 292 DGAAGLFEPSPNFMGPDLETTKEWIRYSYDHYAGLLSENCGVQVINGYNLAKSEKQCAEN 351
GA + N M + + C + NG + K + + E
Sbjct: 158 LGAMVVTGLGGNPMAVVSKQVNMELAKIKQ--------KCPLYEANGQAVPKEKDEMVEQ 209
Query: 352 HY 353
+
Sbjct: 210 EF 211
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 31.1 bits (71), Expect = 1.4
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
++A+ GAG IG A + P+ ++ VIAD
Sbjct: 6 RIALFGAGRIGHVHAANIAAN-PDLELVVIAD 36
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 31.1 bits (70), Expect = 1.5
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 236 PTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQR----RFPNCDVTVIADKFNMDTTS 291
P A P ++ + + ++G G+ A E R P + ++ DK +++ +
Sbjct: 8 PRGVAIAEPIIVEHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKI-LLVDKASLERSG 66
Query: 292 DGAAGLFEPSPNFMGPDLETTKE-WIRYSYDHYAGL 326
A GL + + ++R GL
Sbjct: 67 AVAQGL----SAINTYLGDNNADDYVRMVRTDLMGL 98
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 31.0 bits (71), Expect = 1.5
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 245 KVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
K + K+ ++G G S A L+R ++ ++
Sbjct: 31 KDRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMV 67
Score = 28.7 bits (65), Expect = 8.9
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
++G G IG+ L+ R +VT++
Sbjct: 189 HATVIGGGFIGVEMVENLRER--GIEVTLV 216
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 31.0 bits (70), Expect = 1.7
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 15/84 (17%)
Query: 8 GVWLIEEFLIGLASGSHIKVPGVEMIPVEAFRLVPHSSGSYIVVDGEVLDYGPIQAEIFP 67
++ EEFL G + + I +E I+ DGE
Sbjct: 223 APFIAEEFLQGEYGDWYQTEGYSDYISIEG-----------IMADGEYFPIAIHDKTPQI 271
Query: 68 GLIERTVTTEYLPPQNRKEERQGR 91
G E T ++ P EE + +
Sbjct: 272 GFTE----TSHITPSILDEEAKKK 291
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 30.8 bits (70), Expect = 1.7
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 244 PKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
P + + A++G G I + L++ ++ + D
Sbjct: 7 PPITDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCD 46
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 30.7 bits (70), Expect = 1.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 251 HKVAILGAGIIGLSTALELQRRFPNCDVTVIA 282
+AI+GAG GL A+ + PN + +I+
Sbjct: 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALIS 37
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein
translocation, periplasmic oxidoreductase, signal
peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas
mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A*
1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Length = 433
Score = 30.9 bits (70), Expect = 1.8
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 241 PANPKVMGSNHKV--AILGAGIIGLSTALELQRRFPNCDVTVIAD 283
P + M + + AI+G G L+ L + + +
Sbjct: 72 PYAIRPMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVS 116
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 29.5 bits (67), Expect = 1.8
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 250 NHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
++ ++G+ G+ EL V +
Sbjct: 6 RYEYIVIGSEAAGVGLVRELTAA--GKKVLAV 35
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 30.6 bits (70), Expect = 1.9
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 8/38 (21%)
Query: 247 MGSNHKVAILGAGIIGL---STALELQRRFPNCDVTVI 281
M V ++GAG IGL +TA +V V+
Sbjct: 139 MPDKKHVVVIGAGFIGLEFAATARAK-----GLEVDVV 171
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 30.5 bits (69), Expect = 2.1
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 232 LFFIPTQSCPANPKVMGS---NHKVAILGAGIIGLSTALELQRRFPNCDV-TVIADKFNM 287
+ + P + + + + I+G G G A E + + +K +
Sbjct: 1 MVYYPKKYELYKADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 60
Query: 288 DTTSDGAAGL 297
+ + A GL
Sbjct: 61 ERSGAVAQGL 70
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 30.7 bits (69), Expect = 2.1
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 252 KVAILGAGIIGLSTA----LELQRRFPNCDVTV------IADKFNMDTTSDGAAGLFEPS 301
++AILGAG G++ ++ ++ ++N + G EP
Sbjct: 4 RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRT-GLDENGEPV 62
Query: 302 PNFMGPDLET--TKEWIRYSY 320
+ M L + KE + ++
Sbjct: 63 HSSMYRYLWSNGPKECLEFAD 83
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 30.2 bits (69), Expect = 2.2
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 247 MGSNHKVAILGAGIIGL---STALELQRRFPNCDVTVI 281
+ ++ I+G G+IGL +TA V+++
Sbjct: 142 LRPQSRLLIVGGGVIGLELAATARTA-----GVHVSLV 174
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 30.1 bits (67), Expect = 2.2
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVI 281
V ++GAG GLS A E+ + PN V +I
Sbjct: 42 VVVVGAGSAGLSAAYEISKN-PNVQVAII 69
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 30.3 bits (68), Expect = 2.2
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADK 284
VA+LG G +G+S A + V V A +
Sbjct: 157 NVAVLGLGRVGMSVARKFAAL--GAKVKVGARE 187
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 30.5 bits (67), Expect = 2.3
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 252 KVAILGAGIIGLSTALELQRRF----------PNCDVTVIADK 284
++ I+G G G TA L P ++T+I
Sbjct: 9 EIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESP 51
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 30.4 bits (69), Expect = 2.3
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 251 HKVAILGAGIIGLSTALELQRR 272
V ++G G GLS L+R
Sbjct: 4 VDVVVIGGGQSGLSAGYFLRRS 25
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 30.3 bits (69), Expect = 2.3
Identities = 10/38 (26%), Positives = 23/38 (60%), Gaps = 8/38 (21%)
Query: 247 MGSNHKVAILGAGIIGL---STALELQRRFPNCDVTVI 281
+ +++++ ++G G IGL +TA++ N VT++
Sbjct: 146 LIADNRLVVIGGGYIGLEVAATAIKA-----NMHVTLL 178
Score = 29.5 bits (67), Expect = 4.2
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
M +N V I+G G+ G+ A L+ ++ ++ D
Sbjct: 1 MNANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 37
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase,
NADP, pantothenate BIOS PSI-2, protein structure
initiative; 1.90A {Methylococcus capsulatus}
Length = 320
Score = 30.3 bits (69), Expect = 2.5
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 282
+ ++G G IG L + V+V++
Sbjct: 4 NILVIGTGAIGSFYGALLAKT--GHCVSVVS 32
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 30.1 bits (67), Expect = 2.6
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+N K ++GAG GL A+EL V ++
Sbjct: 91 TNTKCLVVGAGPCGLRAAVELALL--GARVVLV 121
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 30.2 bits (69), Expect = 2.6
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 247 MGSNHKVAILGAGIIGL---STALELQRRFPNCDVTVI 281
S ++ I+G G+IG +TA +L VT++
Sbjct: 140 WTSATRLLIVGGGLIGCEVATTARKL-----GLSVTIL 172
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 30.1 bits (69), Expect = 2.6
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
K+ ++GA G + A +++R D+ +
Sbjct: 3 KIVVVGAVAGGATCASQIRRLDKESDIIIF 32
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 30.0 bits (68), Expect = 2.7
Identities = 9/56 (16%), Positives = 17/56 (30%)
Query: 217 PKSQTNATQNGDKKGLFFIPTQSCPANPKVMGSNHKVAILGAGIIGLSTALELQRR 272
P ++ L ++ A V ++G+G G S A+
Sbjct: 93 PYAKKWLRDEPTIAELAKDKSERQAALASAPHDTVDVVVVGSGGAGFSAAISATDS 148
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 30.2 bits (69), Expect = 2.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 249 SNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
S V ++GA +G A +R P VT+I
Sbjct: 2 SLKHVVVIGAVALGPKAACRFKRLDPEAHVTMI 34
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain,
PSI-2, NYSGXRC, structur genomics, protein structure
initiative; 2.00A {Ralstonia solanacearum}
Length = 335
Score = 30.0 bits (68), Expect = 2.8
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 282
++ I+GAG +G L + V+A
Sbjct: 5 RICIVGAGAVGGYLGARLALA--GEAINVLA 33
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 30.2 bits (69), Expect = 2.9
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
KV ++G G + P+ DVT
Sbjct: 2 KVIVVGCTHAGTFAVKQTIADHPDADVTAY 31
Score = 28.6 bits (65), Expect = 7.9
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ I+G+G IG A + N +V +I
Sbjct: 151 TITIIGSGYIGAELAEAYSNQ--NYNVNLI 178
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 30.0 bits (68), Expect = 2.9
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 253 VAILGAGIIGLSTALELQRRFPNCDVTVIADKFNMDTTSDGA-AGLFEP 300
VAI+GAG GL L + D ++ ++ D AG+ E
Sbjct: 5 VAIIGAGPSGLLLGQLLHKA--GIDNVIL-ERQTPDYVLGRIRAGVLEQ 50
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 29.9 bits (68), Expect = 3.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ I G G+IG S AL ++R P+ +
Sbjct: 8 TIYIAGLGLIGASLALGIKRDHPHYKIVGY 37
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 29.6 bits (67), Expect = 3.1
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
++ ++G G I L + + +
Sbjct: 7 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWS 38
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 29.9 bits (68), Expect = 3.2
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 282
++AI+GAG +GL LQR DV +
Sbjct: 4 RIAIVGAGALGLYYGALLQRS--GEDVHFLL 32
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 29.8 bits (68), Expect = 3.2
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 243 NPKVMGSNHKVAILGAGIIGLSTALEL 269
P ++ KVA++G+G+IG +
Sbjct: 2 APALVQRRKKVAMIGSGMIGGTMGYLC 28
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 29.8 bits (67), Expect = 3.4
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 251 HKVAILGAGIIGLSTALELQRRFP-----NCDVTVI 281
+ +AI+G+G A L + + V ++
Sbjct: 4 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDML 39
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 29.8 bits (68), Expect = 3.4
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
KV +LG+ G EL P+ ++
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWY 31
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 29.8 bits (68), Expect = 3.4
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
I+G G+S A+++ R N +V +
Sbjct: 38 NYVIIGGDAAGMSAAMQIVRNDENANVVTL 67
Score = 28.3 bits (64), Expect = 9.8
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
V I+G G IGL A V +I
Sbjct: 188 DVTIIGGGAIGLEMAETFVEL--GKKVRMI 215
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 29.5 bits (67), Expect = 3.5
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
V I+G G +G S A L+R +
Sbjct: 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGY 32
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 29.9 bits (68), Expect = 3.5
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
K+ I+G G S A +R ++ +
Sbjct: 3 KILIIGGVAGGASAAARARRLSETAEIIMF 32
Score = 28.3 bits (64), Expect = 9.4
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
++G G IGL L T++
Sbjct: 153 HATVVGGGFIGLEMMESLHHL--GIKTTLL 180
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 29.8 bits (68), Expect = 3.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
KV I+G G G+S A ++R P DV V
Sbjct: 5 KVVIIGGGAAGMSAASRVKRLKPEWDVKVF 34
Score = 29.4 bits (67), Expect = 4.8
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 38/117 (32%)
Query: 200 TPNLEIKQLNV------QVTKVNPKSQTNATQNGDKKGLFF----IPTQSCPANPKVMGS 249
P + IK+ + +V +V+ +NG +K + + P P + G
Sbjct: 64 PPEVFIKKRGIDLHLNAEVIEVDTGYVRV-RENGGEKSYEWDYLVFANGASPQVPAIEGV 122
Query: 250 NH-------------------------KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
N V I+G G IG+ A + +VT+I
Sbjct: 123 NLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQ--GKNVTMI 177
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 29.8 bits (68), Expect = 3.7
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
K+ I+GA G+S A+ ++++P ++++I
Sbjct: 4 KIVIIGASFAGISAAIASRKKYPQAEISLI 33
Score = 28.6 bits (65), Expect = 7.6
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
VA++GAG IG+ L + V V
Sbjct: 149 TVAVIGAGPIGMEAIDFLVKM--KKTVHVF 176
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL
protein structure initiative, midwest center for
structural genomics, MCSG; 2.98A {Veillonella parvula}
Length = 349
Score = 29.5 bits (67), Expect = 3.9
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 13/60 (21%)
Query: 249 SNHKVAILGAGIIG---LSTAL--ELQRRFPNCDVTVIADKFNMDTTSDGAAGLFEPSPN 303
++ + +G L+T L++ P+ +T + D+ + E +PN
Sbjct: 7 DYKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDE--------KLQQVMEYNPN 58
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase;
HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB:
2ixb_A*
Length = 444
Score = 29.7 bits (66), Expect = 4.1
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 241 PANPKVMGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
KV ++A + G+ G + + RR + ++ AD
Sbjct: 16 FNPKKV-----RIAFIAVGLRGQTHVENMARR-DDVEIVAFAD 52
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics,
putative 2-dehydropantoate 2-reductase, protein
structure initiative; 2.30A {Staphylococcus aureus
subsp}
Length = 294
Score = 29.1 bits (66), Expect = 4.3
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 282
VAI+G G +G + A ELQ+ T+I
Sbjct: 4 SVAIIGPGAVGTTIAYELQQS--LPHTTLIG 32
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 29.4 bits (67), Expect = 4.3
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 247 MGSNHKVAILGAGIIGLSTALEL 269
M K+ ++G+G+IG A +
Sbjct: 1 MAPKAKIVLVGSGMIGGVMATLI 23
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 29.2 bits (66), Expect = 4.5
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
V I+G G +G S A L+R +
Sbjct: 35 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGY 64
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 29.5 bits (67), Expect = 4.9
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 252 KVAILGAGIIGL---STALELQRRFPNCDVTVI 281
++G G IGL + + +VT++
Sbjct: 154 NAVVIGGGYIGLEAAAVLTKF-----GVNVTLL 181
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 29.0 bits (66), Expect = 4.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 247 MGSNHKVAILGAGIIGLSTA 266
M ++ KV ++G G +G S A
Sbjct: 2 MPNHQKVVLVGDGAVGSSYA 21
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium, two domain; 2.30A {Rhizobium etli}
Length = 330
Score = 29.3 bits (66), Expect = 5.2
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIADKF 285
+AI+G G I L + N + A +
Sbjct: 27 NLAIVGVGKIVRDQHLPSIAKNANFKLVATASRH 60
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 29.0 bits (64), Expect = 5.5
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 282
KV + G G + + R +V V+
Sbjct: 4 KVCVCGGGNGAHTLSGLAASR-DGVEVRVLT 33
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83,
structural genomics, PSI-2; HET: MSE; 2.15A
{Porphyromonas gingivalis}
Length = 317
Score = 29.2 bits (66), Expect = 5.6
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 252 KVAILGAGIIGLSTALELQR----RFPNCDVTVIA 282
K+A+ G G +G L +V+ IA
Sbjct: 10 KIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIA 44
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 29.0 bits (66), Expect = 6.1
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+ V I+GAG G+ A+E +R V VI
Sbjct: 24 VAEKQDVVIIGAGAAGMMCAIEAGKR--GRRVLVI 56
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure,
alpha-beta structure, structural genomics, protein
structure initiative; HET: MSE; 2.00A {Enterococcus
faecalis}
Length = 316
Score = 28.8 bits (65), Expect = 7.4
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 282
K+AI GAG +G + L + DVT+I
Sbjct: 5 KIAIAGAGAMGSRLGIMLHQG--GNDVTLID 33
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 28.6 bits (65), Expect = 7.4
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 247 MGSNHKVAILGAGIIGLSTALELQRRFPNCDVTVI 281
M + I+GAG GL A +L + VTV
Sbjct: 1 MSQYSENIIIGAGAAGLFCAAQLAKL--GKSVTVF 33
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 28.7 bits (65), Expect = 7.6
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 10/38 (26%)
Query: 34 PVEAFRLVP----HSSGSYIV-VDG-EVLDY----GPI 61
AF + G + VDG LD+ G +
Sbjct: 32 DTRAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGAL 69
>1gpi_A Exoglucanase I; hydrolase, glycosidase, cellulase, beta-glucanase,
glycoprotein, cellulose degradation, enzyme, reaction
center; HET: NAG; 1.32A {Phanerochaete chrysosporium}
SCOP: b.29.1.10 PDB: 1h46_X* 1z3t_A* 1z3v_A* 1z3w_A*
Length = 431
Score = 28.7 bits (64), Expect = 7.7
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 185 VSVSVQQVTQTDEKVTPNLEIKQLNVQVTKV--NPKSQTNATQNGDKKGLFFIPTQSCPA 242
+V Q +T + EI+++ +Q KV N + + I C
Sbjct: 275 FTVVTQFLTNDNTSTGTLSEIRRIYIQNGKVIQNSVANIPGVDPVN-----SITDNFCAQ 329
Query: 243 NPKVMGSNHKVAILGAGIIGLSTALE 268
G + A G G+ + AL
Sbjct: 330 QKTAFGDTNWFAQKG-GLKQMGEALG 354
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 28.4 bits (64), Expect = 7.8
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIA 282
KVAI+GAG +G L R +V +IA
Sbjct: 21 KVAIMGAGAVGCYYGGMLARA--GHEVILIA 49
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 28.4 bits (64), Expect = 7.8
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
++ ++G G IG A L+ + + I+D
Sbjct: 4 RIGVIGLGRIGTIHAENLK-MIDDAILYAISD 34
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein
structure initiative; HET: NAD; 2.30A {Chromobacterium
violaceum}
Length = 359
Score = 28.5 bits (64), Expect = 8.4
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
KV ++G G L + + + D
Sbjct: 7 KVGLVGIGAQMQENLLPSLLQMQDIRIVAACD 38
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor,
AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA
recombination; HET: T27; 1.80A {Human immunodeficiency
virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B*
3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B*
3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B*
1n5y_B* 1bqm_B* 1n6q_B* ...
Length = 428
Score = 28.6 bits (64), Expect = 8.7
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 342 AKSEKQCAEN-HYLK-PVLPVYKRMSEEELAEI---GPGDWKYGIY 382
++E + AEN LK PV VY S++ +AEI G G W Y IY
Sbjct: 297 EEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIY 342
Score = 28.6 bits (64), Expect = 8.7
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 473 AKSEKQCAEN-HYLK-PVLPVYKRMSEEELAEI---GPGDWKYGIY 513
++E + AEN LK PV VY S++ +AEI G G W Y IY
Sbjct: 297 EEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIY 342
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 28.5 bits (64), Expect = 8.8
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
KV ++G G IG+ L + +V +
Sbjct: 183 KVLVVGTGPIGVLFTLLFRTYG--LEVWMANR 212
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 28.2 bits (64), Expect = 9.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 247 MGSNHKVAILGAGIIGLSTALEL 269
M K+A++G+G IG + A +
Sbjct: 1 MIERRKIAVIGSGQIGGNIAYIV 23
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 28.3 bits (64), Expect = 9.4
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVI 281
+VA++GAG IG+ A QR+ +V +I
Sbjct: 196 RVAVVGAGYIGVELAEAFQRK--GKEVVLI 223
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 28.4 bits (64), Expect = 9.5
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 252 KVAILGAGIIGLSTALELQRRFPNCDVTVIAD 283
K+ ++G G I L + + +
Sbjct: 8 KMGMIGLGSIAQKAYLPILTKSERFEFVGAFT 39
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 28.3 bits (64), Expect = 9.7
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 10/38 (26%)
Query: 34 PVEAFRLVP----HSSGSYIV-VDG-EVLDY----GPI 61
+ R P +GS VDG +++
Sbjct: 75 SILFHRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAG 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.410
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,323,977
Number of extensions: 703125
Number of successful extensions: 1677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1668
Number of HSP's successfully gapped: 202
Length of query: 728
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 627
Effective length of database: 3,881,772
Effective search space: 2433871044
Effective search space used: 2433871044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)