Query psy16978
Match_columns 154
No_of_seqs 169 out of 1441
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 18:35:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cue_A Paired box protein PAX6 99.8 5.2E-21 1.8E-25 125.5 6.4 66 34-99 3-68 (80)
2 2dmu_A Homeobox protein goosec 99.8 6E-21 2E-25 122.1 5.2 64 34-97 3-66 (70)
3 2cra_A Homeobox protein HOX-B1 99.8 4.1E-21 1.4E-25 122.9 4.2 65 33-97 2-66 (70)
4 1nk2_P Homeobox protein VND; h 99.8 1.1E-20 3.9E-25 123.0 6.3 66 32-97 3-68 (77)
5 1au7_A Protein PIT-1, GHF-1; c 99.8 2.3E-21 8E-26 140.6 3.2 96 1-96 43-145 (146)
6 2dmq_A LIM/homeobox protein LH 99.8 1.3E-20 4.4E-25 123.4 6.0 64 34-97 3-66 (80)
7 2dms_A Homeobox protein OTX2; 99.8 1.1E-20 3.7E-25 123.9 5.4 64 33-96 2-65 (80)
8 2e1o_A Homeobox protein PRH; D 99.8 1.3E-20 4.6E-25 120.5 5.6 64 34-97 3-66 (70)
9 2da2_A Alpha-fetoprotein enhan 99.8 7E-21 2.4E-25 121.7 4.1 65 33-97 2-66 (70)
10 2h1k_A IPF-1, pancreatic and d 99.8 1.1E-20 3.7E-25 118.5 4.4 60 37-96 2-61 (63)
11 2dmt_A Homeobox protein BARH-l 99.8 1.2E-20 3.9E-25 123.8 4.7 64 34-97 13-76 (80)
12 2djn_A Homeobox protein DLX-5; 99.8 7.5E-21 2.6E-25 121.7 3.6 64 33-96 2-65 (70)
13 2da1_A Alpha-fetoprotein enhan 99.8 7.5E-21 2.6E-25 121.6 3.5 65 33-97 2-66 (70)
14 2xsd_C POU domain, class 3, tr 99.8 5.6E-21 1.9E-25 141.1 3.3 98 1-98 53-159 (164)
15 3a01_A Homeodomain-containing 99.8 1.1E-20 3.6E-25 127.4 4.4 68 32-99 11-78 (93)
16 2vi6_A Homeobox protein nanog; 99.8 5.8E-21 2E-25 119.4 2.8 60 37-96 2-61 (62)
17 2hdd_A Protein (engrailed home 99.8 1.1E-20 3.7E-25 117.8 3.6 59 37-95 2-60 (61)
18 1puf_A HOX-1.7, homeobox prote 99.8 3.9E-20 1.3E-24 120.4 6.1 65 34-98 9-73 (77)
19 1zq3_P PRD-4, homeotic bicoid 99.8 2.1E-20 7.2E-25 118.9 4.7 62 37-98 1-62 (68)
20 1fjl_A Paired protein; DNA-bin 99.8 3.1E-20 1.1E-24 122.0 5.5 65 34-98 14-78 (81)
21 1ig7_A Homeotic protein MSX-1; 99.8 2.3E-20 7.8E-25 115.1 4.5 57 39-95 1-57 (58)
22 2kt0_A Nanog, homeobox protein 99.8 1.1E-20 3.9E-25 124.8 3.3 64 34-97 18-81 (84)
23 1b8i_A Ultrabithorax, protein 99.8 1.2E-20 4.1E-25 124.1 3.1 65 34-98 16-80 (81)
24 2da3_A Alpha-fetoprotein enhan 99.8 2E-20 6.9E-25 122.4 3.9 63 35-97 14-76 (80)
25 3d1n_I POU domain, class 6, tr 99.8 1.9E-20 6.6E-25 136.4 4.1 95 1-95 44-150 (151)
26 3l1p_A POU domain, class 5, tr 99.8 2.3E-20 7.8E-25 136.6 4.3 96 1-96 50-154 (155)
27 1jgg_A Segmentation protein EV 99.8 3.8E-20 1.3E-24 114.9 4.1 58 39-96 2-59 (60)
28 1bw5_A ISL-1HD, insulin gene e 99.8 2.4E-20 8.2E-25 118.0 3.1 61 37-97 2-62 (66)
29 2m0c_A Homeobox protein arista 99.8 4.6E-20 1.6E-24 119.2 4.4 65 33-97 4-68 (75)
30 2l7z_A Homeobox protein HOX-A1 99.8 5.8E-20 2E-24 118.5 4.8 62 36-97 5-66 (73)
31 1wh5_A ZF-HD homeobox family p 99.8 3.6E-20 1.2E-24 121.5 3.9 61 35-95 14-78 (80)
32 1ftt_A TTF-1 HD, thyroid trans 99.8 3.8E-20 1.3E-24 117.7 3.8 61 38-98 2-62 (68)
33 1yz8_P Pituitary homeobox 2; D 99.8 1.3E-20 4.3E-25 120.0 1.5 62 37-98 2-63 (68)
34 1ahd_P Antennapedia protein mu 99.8 3.5E-20 1.2E-24 117.9 3.5 60 38-97 2-61 (68)
35 2da4_A Hypothetical protein DK 99.8 3.3E-20 1.1E-24 121.6 3.2 63 34-96 4-70 (80)
36 2r5y_A Homeotic protein sex co 99.8 3.1E-20 1.1E-24 123.8 2.6 63 34-96 24-86 (88)
37 1e3o_C Octamer-binding transcr 99.8 3.5E-20 1.2E-24 136.2 3.2 61 36-96 99-159 (160)
38 3rkq_A Homeobox protein NKX-2. 99.8 6.6E-20 2.2E-24 112.8 3.8 57 38-94 2-58 (58)
39 1wh7_A ZF-HD homeobox family p 99.8 6.5E-20 2.2E-24 120.3 3.5 61 34-95 13-78 (80)
40 1b72_A Protein (homeobox prote 99.8 7.5E-20 2.5E-24 124.1 3.5 65 34-98 30-94 (97)
41 3a02_A Homeobox protein arista 99.8 7.3E-20 2.5E-24 113.6 3.0 57 41-97 2-58 (60)
42 2k40_A Homeobox expressed in E 99.8 9.9E-20 3.4E-24 115.4 3.6 60 38-97 1-60 (67)
43 1akh_A Protein (mating-type pr 99.8 6.9E-20 2.4E-24 114.0 2.8 59 36-94 3-61 (61)
44 2cuf_A FLJ21616 protein; homeo 99.8 1.9E-19 6.6E-24 121.6 5.0 65 33-97 2-81 (95)
45 2da5_A Zinc fingers and homeob 99.8 2.4E-19 8.3E-24 116.1 5.2 58 40-97 9-66 (75)
46 2hi3_A Homeodomain-only protei 99.8 2.4E-19 8E-24 115.6 4.9 59 39-97 3-62 (73)
47 3a03_A T-cell leukemia homeobo 99.8 1.5E-19 5E-24 110.8 3.7 54 43-96 2-55 (56)
48 1x2n_A Homeobox protein pknox1 99.8 2.7E-19 9.2E-24 115.2 5.1 64 34-97 3-69 (73)
49 1uhs_A HOP, homeodomain only p 99.8 2.2E-19 7.6E-24 115.4 4.6 58 39-96 2-60 (72)
50 2ecc_A Homeobox and leucine zi 99.8 2.6E-19 9E-24 115.9 4.8 57 40-96 5-61 (76)
51 2dn0_A Zinc fingers and homeob 99.8 2.3E-19 7.8E-24 116.5 3.4 62 36-97 6-67 (76)
52 2ly9_A Zinc fingers and homeob 99.8 2.9E-19 1E-23 115.3 3.6 60 37-96 5-64 (74)
53 2dmn_A Homeobox protein TGIF2L 99.8 9.9E-19 3.4E-23 115.4 5.7 64 33-96 2-68 (83)
54 1du6_A PBX1, homeobox protein 99.7 3.1E-19 1.1E-23 112.1 2.4 59 37-95 2-63 (64)
55 3nar_A ZHX1, zinc fingers and 99.7 5.1E-19 1.8E-23 119.7 3.6 63 35-97 22-84 (96)
56 1puf_B PRE-B-cell leukemia tra 99.7 9.1E-19 3.1E-23 112.7 4.4 61 38-98 1-64 (73)
57 1wi3_A DNA-binding protein SAT 99.7 1.1E-18 3.9E-23 109.7 4.4 59 34-92 3-62 (71)
58 1b72_B Protein (PBX1); homeodo 99.7 1.1E-18 3.8E-23 115.9 4.5 61 38-98 1-64 (87)
59 1k61_A Mating-type protein alp 99.7 1.3E-18 4.4E-23 107.9 3.7 56 41-96 1-59 (60)
60 2da6_A Hepatocyte nuclear fact 99.7 3.5E-18 1.2E-22 116.3 5.8 63 35-97 3-86 (102)
61 2ecb_A Zinc fingers and homeob 99.7 3.7E-18 1.3E-22 113.9 4.8 53 44-96 17-69 (89)
62 1mnm_C Protein (MAT alpha-2 tr 99.7 3.3E-18 1.1E-22 113.7 4.2 59 36-94 25-86 (87)
63 2cqx_A LAG1 longevity assuranc 99.7 1.1E-18 3.9E-23 112.2 1.5 59 38-96 8-67 (72)
64 3nau_A Zinc fingers and homeob 99.7 3.7E-18 1.3E-22 107.2 3.5 52 45-96 11-62 (66)
65 1le8_B Mating-type protein alp 99.7 3.9E-18 1.3E-22 112.5 3.6 58 39-96 3-63 (83)
66 2dmp_A Zinc fingers and homeob 99.7 1.6E-17 5.5E-22 110.9 5.1 55 42-96 17-71 (89)
67 2l9r_A Homeobox protein NKX-3. 99.7 6E-18 2E-22 107.9 2.1 56 42-97 8-63 (69)
68 1lfb_A Liver transcription fac 99.7 4.7E-18 1.6E-22 115.6 1.6 64 35-98 6-90 (99)
69 2e19_A Transcription factor 8; 99.7 1.4E-17 4.7E-22 104.8 2.4 53 43-95 8-60 (64)
70 1x2m_A LAG1 longevity assuranc 99.7 7.5E-18 2.6E-22 105.7 0.9 49 47-95 9-58 (64)
71 2d5v_A Hepatocyte nuclear fact 99.7 1.9E-17 6.3E-22 122.0 2.6 64 34-97 93-156 (164)
72 3k2a_A Homeobox protein MEIS2; 99.6 2.1E-16 7.3E-21 100.1 2.5 56 43-98 3-61 (67)
73 1ic8_A Hepatocyte nuclear fact 99.5 1.5E-15 5.1E-20 114.6 0.2 60 36-95 113-193 (194)
74 2da7_A Zinc finger homeobox pr 99.5 1.3E-14 4.5E-19 91.6 2.5 46 47-92 14-59 (71)
75 2lk2_A Homeobox protein TGIF1; 99.5 3.3E-14 1.1E-18 94.4 4.1 54 43-96 10-66 (89)
76 2h8r_A Hepatocyte nuclear fact 99.4 4.3E-14 1.5E-18 108.0 3.3 59 35-93 139-218 (221)
77 1mh3_A Maltose binding-A1 home 99.3 3.6E-13 1.2E-17 110.2 1.7 56 39-94 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.8 3.2E-10 1.1E-14 63.0 -0.0 19 80-98 1-19 (37)
79 2ys9_A Homeobox and leucine zi 95.6 0.0045 1.5E-07 38.6 1.5 41 48-88 16-56 (70)
80 2glo_A Brinker CG9653-PA; prot 79.7 1 3.5E-05 26.2 2.0 45 42-87 3-47 (59)
81 1hlv_A CENP-B, major centromer 78.6 1.9 6.6E-05 28.8 3.5 48 41-91 4-51 (131)
82 2elh_A CG11849-PA, LD40883P; s 73.5 4.1 0.00014 25.5 3.8 43 39-86 17-59 (87)
83 2jn6_A Protein CGL2762, transp 73.0 0.76 2.6E-05 29.4 0.1 43 42-88 3-46 (97)
84 3hug_A RNA polymerase sigma fa 65.2 4.5 0.00015 25.4 2.6 46 45-95 38-83 (92)
85 1iuf_A Centromere ABP1 protein 64.8 6.6 0.00022 27.0 3.6 51 39-89 6-60 (144)
86 1jko_C HIN recombinase, DNA-in 61.3 2.8 9.5E-05 22.7 0.9 41 45-90 6-46 (52)
87 1tc3_C Protein (TC3 transposas 60.4 7.1 0.00024 20.5 2.6 40 44-88 5-44 (51)
88 2rgt_A Fusion of LIM/homeobox 55.4 0.21 7.3E-06 35.7 -5.7 30 36-65 134-163 (169)
89 2o8x_A Probable RNA polymerase 46.1 5.7 0.00019 23.1 0.6 46 44-94 15-60 (70)
90 2q24_A Putative TETR family tr 45.7 6.2 0.00021 27.3 0.8 41 49-91 20-60 (194)
91 2kvr_A Ubiquitin carboxyl-term 45.6 17 0.00059 24.8 3.1 23 68-90 72-94 (130)
92 3mzy_A RNA polymerase sigma-H 45.4 16 0.00054 24.4 2.9 45 45-95 110-154 (164)
93 1p4w_A RCSB; solution structur 44.7 15 0.0005 23.7 2.5 45 42-92 32-76 (99)
94 2rn7_A IS629 ORFA; helix, all 43.6 14 0.00049 23.5 2.3 46 42-87 4-52 (108)
95 3c57_A Two component transcrip 40.7 11 0.00038 23.8 1.4 45 44-94 27-71 (95)
96 3i5g_B Myosin regulatory light 39.4 60 0.0021 21.8 5.2 40 41-80 6-50 (153)
97 1je8_A Nitrate/nitrite respons 39.3 11 0.00038 23.1 1.2 49 40-94 17-65 (82)
98 1s7o_A Hypothetical UPF0122 pr 38.7 17 0.00057 24.0 2.1 48 45-97 23-70 (113)
99 2p7v_B Sigma-70, RNA polymeras 37.4 17 0.0006 21.1 1.8 50 44-94 5-54 (68)
100 8tfv_A Protein (thanatin); bac 36.4 15 0.00051 16.7 1.0 15 78-92 2-16 (21)
101 1rp3_A RNA polymerase sigma fa 35.3 13 0.00045 26.6 1.2 46 45-95 188-233 (239)
102 1fse_A GERE; helix-turn-helix 34.9 22 0.00077 20.5 2.1 47 42-94 9-55 (74)
103 1ku3_A Sigma factor SIGA; heli 34.4 24 0.00082 20.7 2.2 50 44-94 10-59 (73)
104 1xsv_A Hypothetical UPF0122 pr 33.4 66 0.0022 20.9 4.4 48 45-97 26-73 (113)
105 2hxi_A Putative transcriptiona 31.6 16 0.00054 26.9 1.1 52 39-91 23-75 (241)
106 2lv7_A Calcium-binding protein 31.1 81 0.0028 19.7 4.5 47 40-86 25-78 (100)
107 2xi8_A Putative transcription 30.6 11 0.00037 21.2 0.0 24 68-91 17-40 (66)
108 1x3u_A Transcriptional regulat 30.1 17 0.00058 21.5 0.9 44 45-94 17-60 (79)
109 2qko_A Possible transcriptiona 29.3 32 0.0011 23.9 2.4 41 50-91 34-74 (215)
110 2r1j_L Repressor protein C2; p 29.1 12 0.00041 21.2 0.1 24 68-91 21-44 (68)
111 1pdn_C Protein (PRD paired); p 28.9 71 0.0024 20.0 4.0 45 43-87 74-125 (128)
112 1rzs_A Antirepressor, regulato 28.3 16 0.00054 21.1 0.5 19 68-86 13-31 (61)
113 2x48_A CAG38821; archeal virus 28.2 11 0.00039 20.8 -0.1 36 47-87 18-53 (55)
114 2hxo_A Putative TETR-family tr 27.7 50 0.0017 23.9 3.4 52 39-91 10-62 (237)
115 1zug_A Phage 434 CRO protein; 27.7 13 0.00044 21.3 0.0 24 68-91 19-42 (71)
116 3bd1_A CRO protein; transcript 27.7 11 0.00038 22.5 -0.3 24 68-91 14-37 (79)
117 2rnj_A Response regulator prot 26.4 16 0.00055 22.6 0.3 46 43-94 28-73 (91)
118 3bs3_A Putative DNA-binding pr 26.3 15 0.0005 21.4 0.1 24 68-91 26-49 (76)
119 1tty_A Sigma-A, RNA polymerase 25.7 40 0.0014 20.6 2.1 49 45-94 19-67 (87)
120 1or7_A Sigma-24, RNA polymeras 25.6 26 0.00091 24.2 1.4 28 68-95 159-186 (194)
121 3dcf_A Transcriptional regulat 25.5 15 0.00053 25.3 0.1 42 50-92 37-78 (218)
122 1adr_A P22 C2 repressor; trans 24.9 16 0.00054 21.2 0.1 24 68-91 21-44 (76)
123 2hin_A GP39, repressor protein 24.8 18 0.00063 22.0 0.3 25 68-92 13-37 (71)
124 2jpc_A SSRB; DNA binding prote 24.8 13 0.00043 21.0 -0.4 26 69-94 17-42 (61)
125 3omt_A Uncharacterized protein 24.6 17 0.00057 21.2 0.1 24 68-91 24-47 (73)
126 3rd3_A Probable transcriptiona 24.3 21 0.00071 24.2 0.6 42 50-92 16-57 (197)
127 3bni_A Putative TETR-family tr 24.3 12 0.00042 26.7 -0.6 42 50-92 49-90 (229)
128 2b5a_A C.BCLI; helix-turn-heli 24.3 17 0.00058 21.1 0.1 24 68-91 26-49 (77)
129 2g7l_A TETR-family transcripti 24.1 41 0.0014 24.6 2.3 50 40-90 14-64 (243)
130 1u78_A TC3 transposase, transp 23.7 54 0.0018 21.3 2.6 41 43-88 5-45 (141)
131 1r69_A Repressor protein CI; g 23.4 17 0.00059 20.5 0.0 24 68-91 17-40 (69)
132 1fi6_A EH domain protein REPS1 23.4 39 0.0013 20.6 1.8 43 44-86 2-49 (92)
133 3on2_A Probable transcriptiona 23.1 36 0.0012 22.9 1.7 43 50-93 18-60 (199)
134 3plu_A Ubiquitin-like modifier 23.0 57 0.0019 20.9 2.5 27 67-93 47-73 (93)
135 3q0w_A HTH-type transcriptiona 22.8 25 0.00086 25.0 0.8 43 51-94 51-93 (236)
136 2qwt_A Transcriptional regulat 22.8 28 0.00096 24.0 1.1 41 50-92 19-59 (196)
137 3ccy_A Putative TETR-family tr 22.5 48 0.0017 22.7 2.3 41 50-91 20-60 (203)
138 3kz3_A Repressor protein CI; f 22.5 19 0.00066 21.4 0.1 24 68-91 28-51 (80)
139 3him_A Probable transcriptiona 22.3 32 0.0011 23.4 1.3 42 50-92 22-63 (211)
140 3b7h_A Prophage LP1 protein 11 22.2 19 0.00066 20.9 0.1 23 68-90 23-45 (78)
141 3ulq_B Transcriptional regulat 22.2 52 0.0018 20.4 2.2 45 39-89 24-68 (90)
142 2pmy_A RAS and EF-hand domain- 21.9 20 0.00069 21.8 0.1 45 42-86 18-67 (91)
143 2rae_A Transcriptional regulat 21.9 33 0.0011 23.5 1.3 42 50-92 23-64 (207)
144 2iai_A Putative transcriptiona 21.8 38 0.0013 23.9 1.6 42 49-91 35-76 (230)
145 1y7y_A C.AHDI; helix-turn-heli 21.8 20 0.00069 20.5 0.1 23 68-90 29-51 (74)
146 2jml_A DNA binding domain/tran 21.6 18 0.00063 22.0 -0.1 20 68-87 8-27 (81)
147 2kpj_A SOS-response transcript 21.4 21 0.0007 22.1 0.1 24 68-91 25-48 (94)
148 1j9i_A GPNU1 DBD;, terminase s 20.5 24 0.00083 20.6 0.3 23 68-90 5-27 (68)
149 2a6c_A Helix-turn-helix motif; 20.5 23 0.0008 21.3 0.2 23 68-90 34-56 (83)
150 2k27_A Paired box protein PAX- 20.1 1.7E+02 0.0058 19.5 4.7 46 42-87 81-133 (159)
No 1
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=5.2e-21 Score=125.47 Aligned_cols=66 Identities=36% Similarity=0.588 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhHHH
Q psy16978 34 NGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRA 99 (154)
Q Consensus 34 ~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~~~ 99 (154)
.+...++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+.
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp SCCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 456778999999999999999999999999999999999999999999999999999999986543
No 2
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6e-21 Score=122.09 Aligned_cols=64 Identities=31% Similarity=0.520 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 34 NGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 34 ~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
.++..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 3 SGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp STTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 4556788999999999999999999999999999999999999999999999999999999753
No 3
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=4.1e-21 Score=122.91 Aligned_cols=65 Identities=45% Similarity=0.702 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 33 PNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 33 ~~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
+.+...++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 2 SSGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CSSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34566789999999999999999999999999999999999999999999999999999999753
No 4
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.82 E-value=1.1e-20 Score=122.98 Aligned_cols=66 Identities=38% Similarity=0.572 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 32 GPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 32 ~~~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
+....++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 3 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~ 68 (77)
T 1nk2_P 3 DGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp SCCSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhh
Confidence 344566788899999999999999999999999999999999999999999999999999999754
No 5
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.82 E-value=2.3e-21 Score=140.60 Aligned_cols=96 Identities=22% Similarity=0.343 Sum_probs=75.6
Q ss_pred CCccccccchhhHHHHHhhhHHHHhhhhccCC-------CCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q psy16978 1 MCFPLEIRFTHQLVIVLNVHFAKMLCQLKQSG-------PNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAH 73 (154)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~ 73 (154)
||++..+.+.+.++..|.+.+..++.+....+ +...++|+.|+.|+..|+..|+..|..++||+..++..||.
T Consensus 43 i~rfe~l~ls~knm~kLkPlL~~wl~e~e~~~~~~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~ 122 (146)
T 1au7_A 43 ICRFENLQLSFKNACKLKAILSKWLEEAEQVGALYNEKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAE 122 (146)
T ss_dssp HHHHHTTCSBHHHHHHHHHHHHHHHHHCCC----------------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred HHHHhccCCChHHHHhcchHHHHHHHHhhcccCccCcccCCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 58888888887766666666666665554332 22345778899999999999999999999999999999999
Q ss_pred HhCCCcccceeeeccchhhHHHh
Q psy16978 74 ALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 74 ~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
.+||++++|++||||||+|+||.
T Consensus 123 ~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 123 ELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp HHTCCHHHHHHHHHHHHHHTTSC
T ss_pred HhCCChhhchhhhHhhhhhhhcc
Confidence 99999999999999999999974
No 6
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=123.44 Aligned_cols=64 Identities=28% Similarity=0.539 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 34 NGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 34 ~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
.+.+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 3 SGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 4556789999999999999999999999999999999999999999999999999999999853
No 7
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1.1e-20 Score=123.91 Aligned_cols=64 Identities=36% Similarity=0.545 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 33 PNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 33 ~~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
..+.+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 2 SSGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp CCCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 3456788999999999999999999999999999999999999999999999999999999975
No 8
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=1.3e-20 Score=120.48 Aligned_cols=64 Identities=41% Similarity=0.685 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 34 NGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 34 ~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
.+...++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 3 ~~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 4456788899999999999999999999999999999999999999999999999999999753
No 9
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=7e-21 Score=121.73 Aligned_cols=65 Identities=31% Similarity=0.469 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 33 PNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 33 ~~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
+...+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 2 SSGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 34567789999999999999999999999999999999999999999999999999999999753
No 10
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.81 E-value=1.1e-20 Score=118.55 Aligned_cols=60 Identities=67% Similarity=1.014 Sum_probs=55.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 37 PRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 37 ~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
..++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 467889999999999999999999999999999999999999999999999999999975
No 11
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-20 Score=123.80 Aligned_cols=64 Identities=42% Similarity=0.683 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 34 NGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 34 ~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
...+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3456788899999999999999999999999999999999999999999999999999999753
No 12
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=7.5e-21 Score=121.65 Aligned_cols=64 Identities=42% Similarity=0.734 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 33 PNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 33 ~~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
+.+...++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 2 SSGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CSCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 3456778999999999999999999999999999999999999999999999999999999975
No 13
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.81 E-value=7.5e-21 Score=121.59 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 33 PNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 33 ~~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
+...+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 2 SSGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CSSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 34556789999999999999999999999999999999999999999999999999999999753
No 14
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.81 E-value=5.6e-21 Score=141.07 Aligned_cols=98 Identities=20% Similarity=0.238 Sum_probs=71.1
Q ss_pred CCccccccchhhHHHHHhhhHHHHhhhhccCCC---------CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHH
Q psy16978 1 MCFPLEIRFTHQLVIVLNVHFAKMLCQLKQSGP---------NGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEI 71 (154)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~L 71 (154)
||+|..+.+.+.++..+.+-+..++.+...+.. ...++||.|+.|+..|+..|+..|..++||+..++..|
T Consensus 53 i~rFE~l~ls~kn~~klkPlL~~wl~eae~~~~~~~~~~~~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~L 132 (164)
T 2xsd_C 53 ICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGL 132 (164)
T ss_dssp HHHHHTTCSBHHHHHHHHHHHHHHHHHHCC-----------------------CCHHHHHHHHHHHHHCSSCCHHHHHHH
T ss_pred hhhhhccCCCHHHHHHcchhHHHHHhhhccccCCCcccccccccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 588877777766666665555555555543321 23567889999999999999999999999999999999
Q ss_pred HHHhCCCcccceeeeccchhhHHHhHH
Q psy16978 72 AHALCLTERQIKIWFQNRRMKLKKELR 98 (154)
Q Consensus 72 a~~l~l~~~qV~~WFqNrRak~kr~~~ 98 (154)
|..+||++++|++||||||+|+||..+
T Consensus 133 A~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 133 ADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred HHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 999999999999999999999998643
No 15
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.81 E-value=1.1e-20 Score=127.40 Aligned_cols=68 Identities=38% Similarity=0.654 Sum_probs=62.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhHHH
Q psy16978 32 GPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRA 99 (154)
Q Consensus 32 ~~~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~~~ 99 (154)
.+...++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+....
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 11 NRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp TSCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 34455678899999999999999999999999999999999999999999999999999999987554
No 16
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.81 E-value=5.8e-21 Score=119.40 Aligned_cols=60 Identities=32% Similarity=0.561 Sum_probs=52.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 37 PRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 37 ~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467889999999999999999999999999999999999999999999999999999974
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.81 E-value=1.1e-20 Score=117.79 Aligned_cols=59 Identities=46% Similarity=0.771 Sum_probs=53.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHH
Q psy16978 37 PRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95 (154)
Q Consensus 37 ~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr 95 (154)
++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 35789999999999999999999999999999999999999999999999999999986
No 18
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.80 E-value=3.9e-20 Score=120.42 Aligned_cols=65 Identities=63% Similarity=0.921 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhHH
Q psy16978 34 NGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 98 (154)
Q Consensus 34 ~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~~ 98 (154)
.....++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+..+
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 34567889999999999999999999999999999999999999999999999999999998654
No 19
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.80 E-value=2.1e-20 Score=118.95 Aligned_cols=62 Identities=40% Similarity=0.592 Sum_probs=58.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhHH
Q psy16978 37 PRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 98 (154)
Q Consensus 37 ~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~~ 98 (154)
++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 1 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 1 GPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999999999999999999999998654
No 20
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.80 E-value=3.1e-20 Score=121.95 Aligned_cols=65 Identities=38% Similarity=0.563 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhHH
Q psy16978 34 NGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 98 (154)
Q Consensus 34 ~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~~ 98 (154)
...++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+...
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 34567889999999999999999999999999999999999999999999999999999998654
No 21
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=2.3e-20 Score=115.10 Aligned_cols=57 Identities=47% Similarity=0.772 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHH
Q psy16978 39 RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95 (154)
Q Consensus 39 rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr 95 (154)
++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999986
No 22
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-20 Score=124.80 Aligned_cols=64 Identities=30% Similarity=0.492 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 34 NGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 34 ~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
...++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4456788999999999999999999999999999999999999999999999999999999754
No 23
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.80 E-value=1.2e-20 Score=124.06 Aligned_cols=65 Identities=85% Similarity=1.254 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhHH
Q psy16978 34 NGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 98 (154)
Q Consensus 34 ~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~~ 98 (154)
....+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+
T Consensus 16 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 16 TNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp --------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 44567889999999999999999999999999999999999999999999999999999998643
No 24
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=2e-20 Score=122.42 Aligned_cols=63 Identities=30% Similarity=0.369 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 35 GCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 35 ~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
..++++.|+.|+.+|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 456788899999999999999999999999999999999999999999999999999999753
No 25
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.80 E-value=1.9e-20 Score=136.41 Aligned_cols=95 Identities=22% Similarity=0.314 Sum_probs=73.3
Q ss_pred CCccccccchhhHH----HHHhhhHHHHhhhhccC--------CCCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHH
Q psy16978 1 MCFPLEIRFTHQLV----IVLNVHFAKMLCQLKQS--------GPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRR 68 (154)
Q Consensus 1 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------~~~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~ 68 (154)
||++..+.+.+.++ +++..|+.+........ +....++||.|+.|+..|+..|+..|..++||+..++
T Consensus 44 i~rfe~l~ls~kn~~klkPll~~Wl~e~e~~~~~~~~~~~~~~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r 123 (151)
T 3d1n_I 44 ISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEI 123 (151)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHHCSSCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHH
T ss_pred cccccCCCCChhHHHHhchhHHHHHHHHHhccccCcccccccCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 46676666555444 44555554443221111 1234567889999999999999999999999999999
Q ss_pred HHHHHHhCCCcccceeeeccchhhHHH
Q psy16978 69 IEIAHALCLTERQIKIWFQNRRMKLKK 95 (154)
Q Consensus 69 ~~La~~l~l~~~qV~~WFqNrRak~kr 95 (154)
..||..+||++++|++||||||+|+||
T Consensus 124 ~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 124 TEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 999999999999999999999999986
No 26
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.80 E-value=2.3e-20 Score=136.61 Aligned_cols=96 Identities=21% Similarity=0.236 Sum_probs=76.2
Q ss_pred CCccccccchhhHHHHHhhhHHHHhhhhcc-------CC--CCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHH
Q psy16978 1 MCFPLEIRFTHQLVIVLNVHFAKMLCQLKQ-------SG--PNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEI 71 (154)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~L 71 (154)
||+|..+.+.+.++..|.+-+..++.+... .+ ....++||.|+.|+..|+..|+..|..++||+..++..|
T Consensus 50 i~rfE~l~ls~~nm~kLkPlL~~Wl~eae~~~~~~~~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~L 129 (155)
T 3l1p_A 50 ISRFEALQLSLKNMSKLRPLLEKWVEEADNNENLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHI 129 (155)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHSSCC---CCCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHH
T ss_pred ccccccccCChhhHhhcchHHHHHhhhhhcccCccccccccccccCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHH
Confidence 588888888877755555554444433321 11 112467888999999999999999999999999999999
Q ss_pred HHHhCCCcccceeeeccchhhHHHh
Q psy16978 72 AHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 72 a~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
|..+||++++|++||||||+|+||.
T Consensus 130 A~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 130 ANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCChhheeeccccccccccCC
Confidence 9999999999999999999999973
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.79 E-value=3.8e-20 Score=114.92 Aligned_cols=58 Identities=53% Similarity=0.765 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 39 RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 39 rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 6789999999999999999999999999999999999999999999999999999974
No 28
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.79 E-value=2.4e-20 Score=117.96 Aligned_cols=61 Identities=26% Similarity=0.312 Sum_probs=58.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 37 PRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 37 ~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4688999999999999999999999999999999999999999999999999999998753
No 29
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.79 E-value=4.6e-20 Score=119.23 Aligned_cols=65 Identities=42% Similarity=0.615 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 33 PNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 33 ~~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
+..+++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 4 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 4 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CCCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999754
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.79 E-value=5.8e-20 Score=118.47 Aligned_cols=62 Identities=44% Similarity=0.716 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 36 CPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 36 ~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
...++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 45688899999999999999999999999999999999999999999999999999999753
No 31
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.79 E-value=3.6e-20 Score=121.51 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHH
Q psy16978 35 GCPRRRGRQTYTRFQTLELEKEFHF----NHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95 (154)
Q Consensus 35 ~~~~rr~R~~~t~~q~~~Le~~F~~----~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr 95 (154)
..++||.|+.|+..|+..|+..|+. ++||+..++.+||..+||++++|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3467889999999999999999999 999999999999999999999999999999999874
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.79 E-value=3.8e-20 Score=117.74 Aligned_cols=61 Identities=39% Similarity=0.706 Sum_probs=57.9
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhHH
Q psy16978 38 RRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 98 (154)
Q Consensus 38 ~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~~ 98 (154)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5788999999999999999999999999999999999999999999999999999998643
No 33
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.79 E-value=1.3e-20 Score=119.96 Aligned_cols=62 Identities=39% Similarity=0.569 Sum_probs=58.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhHH
Q psy16978 37 PRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 98 (154)
Q Consensus 37 ~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~~ 98 (154)
++++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 56889999999999999999999999999999999999999999999999999999998654
No 34
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.79 E-value=3.5e-20 Score=117.94 Aligned_cols=60 Identities=90% Similarity=1.329 Sum_probs=57.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 38 RRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 38 ~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 578899999999999999999999999999999999999999999999999999999854
No 35
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.3e-20 Score=121.60 Aligned_cols=63 Identities=17% Similarity=0.263 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhc----CCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 34 NGCPRRRGRQTYTRFQTLELEKEFHFN----HYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 34 ~~~~~rr~R~~~t~~q~~~Le~~F~~~----~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
...++++.|+.|+..|+..|+..|..+ +||+..++.+||..+||++.+|++||||||+|+|+.
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 345678899999999999999999999 999999999999999999999999999999999973
No 36
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.78 E-value=3.1e-20 Score=123.80 Aligned_cols=63 Identities=79% Similarity=1.183 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 34 NGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 34 ~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
...+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 24 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 24 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 345678899999999999999999999999999999999999999999999999999999975
No 37
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.78 E-value=3.5e-20 Score=136.25 Aligned_cols=61 Identities=33% Similarity=0.441 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 36 CPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 36 ~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
.++||.|+.|+..|+..|+..|..++||+..++..||..+||++++|++||||||+|+||.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4678899999999999999999999999999999999999999999999999999999974
No 38
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.78 E-value=6.6e-20 Score=112.79 Aligned_cols=57 Identities=46% Similarity=0.721 Sum_probs=54.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHH
Q psy16978 38 RRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94 (154)
Q Consensus 38 ~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~k 94 (154)
+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 578899999999999999999999999999999999999999999999999999875
No 39
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.78 E-value=6.5e-20 Score=120.31 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHH
Q psy16978 34 NGCPRRRGRQTYTRFQTLELEKEFHF-----NHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95 (154)
Q Consensus 34 ~~~~~rr~R~~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr 95 (154)
...++||.|+.|+..|+..|+ .|.. ++||+..++.+||..+||++.+|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 345678899999999999999 7999 999999999999999999999999999999999874
No 40
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=7.5e-20 Score=124.07 Aligned_cols=65 Identities=57% Similarity=0.785 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhHH
Q psy16978 34 NGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 98 (154)
Q Consensus 34 ~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~~ 98 (154)
....+++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..+
T Consensus 30 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 30 GLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 34567889999999999999999999999999999999999999999999999999999998643
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.77 E-value=7.3e-20 Score=113.65 Aligned_cols=57 Identities=46% Similarity=0.663 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 41 GRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 41 ~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 578999999999999999999999999999999999999999999999999999754
No 42
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.77 E-value=9.9e-20 Score=115.43 Aligned_cols=60 Identities=40% Similarity=0.540 Sum_probs=57.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 38 RRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 38 ~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
.|+.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 368899999999999999999999999999999999999999999999999999999754
No 43
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.77 E-value=6.9e-20 Score=114.02 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHH
Q psy16978 36 CPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94 (154)
Q Consensus 36 ~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~k 94 (154)
.+.++.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 35678899999999999999999999999999999999999999999999999999875
No 44
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=1.9e-19 Score=121.59 Aligned_cols=65 Identities=31% Similarity=0.459 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC---------------CCcccceeeeccchhhHHHhH
Q psy16978 33 PNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALC---------------LTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 33 ~~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~---------------l~~~qV~~WFqNrRak~kr~~ 97 (154)
+.+.++++.|+.|+..|+.+|+..|..++||+..++..||..|| |++.+|++||||||+++|+..
T Consensus 2 ~~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 2 SSGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CSSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999999999999999999999 999999999999999999753
No 45
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-19 Score=116.15 Aligned_cols=58 Identities=24% Similarity=0.267 Sum_probs=54.6
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 40 RGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 40 r~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
++|+.||..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 4566799999999999999999999999999999999999999999999999999753
No 46
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=2.4e-19 Score=115.57 Aligned_cols=59 Identities=25% Similarity=0.206 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 39 RRGRQTYTRFQTLELEKEFHF-NHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 39 rr~R~~~t~~q~~~Le~~F~~-~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
++.|+.|+..|+..|+..|.. ++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 577899999999999999995 99999999999999999999999999999999999753
No 47
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.77 E-value=1.5e-19 Score=110.84 Aligned_cols=54 Identities=43% Similarity=0.753 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 43 QTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 43 ~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
|.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999974
No 48
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=2.7e-19 Score=115.22 Aligned_cols=64 Identities=22% Similarity=0.292 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 34 NGCPRRRGRQTYTRFQTLELEKEFHF---NHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 34 ~~~~~rr~R~~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
.+.+.++.|+.|+..|+..|+.+|.. ++||+..++..||..+||++.||++||||+|+|+|+..
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 34567888999999999999999987 99999999999999999999999999999999999754
No 49
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=2.2e-19 Score=115.36 Aligned_cols=58 Identities=29% Similarity=0.308 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 39 RRGRQTYTRFQTLELEKEFHF-NHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 39 rr~R~~~t~~q~~~Le~~F~~-~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
.+.|+.|+..|+..|+..|.. ++||+..++..||..+||++.+|++||||||+|+|+.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~ 60 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhh
Confidence 467899999999999999996 9999999999999999999999999999999999974
No 50
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=2.6e-19 Score=115.92 Aligned_cols=57 Identities=21% Similarity=0.259 Sum_probs=53.6
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 40 RGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 40 r~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
..|+.||.+|+.+|+..|..++||+..++.+||..+||+++||++||||+|+|+|+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 445669999999999999999999999999999999999999999999999999974
No 51
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-19 Score=116.49 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 36 CPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 36 ~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
..+.+.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34566799999999999999999999999999999999999999999999999999999753
No 52
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-19 Score=115.29 Aligned_cols=60 Identities=23% Similarity=0.301 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 37 PRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 37 ~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
..++.|+.|+..|+..|+..|..++||+..++.+||..+||++.+|++||||||+|+|+.
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhh
Confidence 457889999999999999999999999999999999999999999999999999999975
No 53
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.75 E-value=9.9e-19 Score=115.37 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 33 PNGCPRRRGRQTYTRFQTLELEKEFHF---NHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 33 ~~~~~~rr~R~~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
+.+.++++.|+.|+..|+.+|+.+|.. ++||+..++..||..+||++.||++||||+|+|+++.
T Consensus 2 s~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 2 SSGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 345677889999999999999999987 5999999999999999999999999999999999864
No 54
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=3.1e-19 Score=112.10 Aligned_cols=59 Identities=25% Similarity=0.366 Sum_probs=56.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHH
Q psy16978 37 PRRRGRQTYTRFQTLELEKEF---HFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95 (154)
Q Consensus 37 ~~rr~R~~~t~~q~~~Le~~F---~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr 95 (154)
..++.|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||+|+|+++|+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 457889999999999999999 89999999999999999999999999999999999886
No 55
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.74 E-value=5.1e-19 Score=119.72 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 35 GCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 35 ~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
....++.|+.|+..|+..|+..|..++||+..++.+||..+||++.+|++||||||+|+|+..
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 345678899999999999999999999999999999999999999999999999999999753
No 56
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.74 E-value=9.1e-19 Score=112.73 Aligned_cols=61 Identities=30% Similarity=0.493 Sum_probs=57.4
Q ss_pred CCCCCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhHH
Q psy16978 38 RRRGRQTYTRFQTLELEKEF---HFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 98 (154)
Q Consensus 38 ~rr~R~~~t~~q~~~Le~~F---~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~~ 98 (154)
+++.|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||+|+|+|+...
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 37889999999999999999 89999999999999999999999999999999999997654
No 57
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.1e-18 Score=109.65 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHhCCCcccceeeeccchhh
Q psy16978 34 NGCPRRRGRQTYTRFQTLELEKEFHF-NHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 92 (154)
Q Consensus 34 ~~~~~rr~R~~~t~~q~~~Le~~F~~-~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak 92 (154)
+.+.++|.||.|+.+|+..|+..|+. ++||+...+..||.++||++++|++||||+|--
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceee
Confidence 45578999999999999999999999 999999999999999999999999999999964
No 58
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.74 E-value=1.1e-18 Score=115.89 Aligned_cols=61 Identities=30% Similarity=0.493 Sum_probs=56.5
Q ss_pred CCCCCCCCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhHH
Q psy16978 38 RRRGRQTYTRFQTLELEKEF---HFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 98 (154)
Q Consensus 38 ~rr~R~~~t~~q~~~Le~~F---~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~~ 98 (154)
.|+.|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+|+...
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 36889999999999999999 89999999999999999999999999999999999998654
No 59
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.73 E-value=1.3e-18 Score=107.91 Aligned_cols=56 Identities=30% Similarity=0.348 Sum_probs=53.2
Q ss_pred CCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 41 GRQTYTRFQTLELEKEFHF---NHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 41 ~R~~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
+|+.|+..|+.+|+..|.. ++||+..++..||..+||++.||++||+|||+++|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 3678999999999999999 9999999999999999999999999999999999863
No 60
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.5e-18 Score=116.31 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHh---------------------CCCcccceeeeccchhhH
Q psy16978 35 GCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHAL---------------------CLTERQIKIWFQNRRMKL 93 (154)
Q Consensus 35 ~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l---------------------~l~~~qV~~WFqNrRak~ 93 (154)
..+.||.|+.|+..|+.+|+..|..++||+..+|++||..| +|++.+|++||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 34678899999999999999999999999999999999999 799999999999999999
Q ss_pred HHhH
Q psy16978 94 KKEL 97 (154)
Q Consensus 94 kr~~ 97 (154)
|++.
T Consensus 83 kr~~ 86 (102)
T 2da6_A 83 AFRQ 86 (102)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8753
No 61
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=3.7e-18 Score=113.91 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 44 TYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 44 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
.||..|+..|+..|..++||+..++.+||..+||+++||+|||||||+|+|+.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 79999999999999999999999999999999999999999999999999974
No 62
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.72 E-value=3.3e-18 Score=113.69 Aligned_cols=59 Identities=29% Similarity=0.347 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCcccceeeeccchhhHH
Q psy16978 36 CPRRRGRQTYTRFQTLELEKEFHF---NHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94 (154)
Q Consensus 36 ~~~rr~R~~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~k 94 (154)
..+++.|+.|+..|+.+|+.+|.. ++||+..++..||..+||++.||++||||||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 456777999999999999999999 99999999999999999999999999999999987
No 63
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.1e-18 Score=112.19 Aligned_cols=59 Identities=24% Similarity=0.335 Sum_probs=54.2
Q ss_pred CCCCCCCCCHHHHHHHHHHh-hhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 38 RRRGRQTYTRFQTLELEKEF-HFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 38 ~rr~R~~~t~~q~~~Le~~F-~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
..+.|.+++..|+..||..| ..++||+..++.+||..+||++++|++||||||+|+|+.
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 34566678899999999999 999999999999999999999999999999999999863
No 64
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.71 E-value=3.7e-18 Score=107.23 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 45 YTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 45 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
-+..|+..|+..|..++||+..++.+||..+||++++|++||||||+|+|+.
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 3689999999999999999999999999999999999999999999999964
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.71 E-value=3.9e-18 Score=112.45 Aligned_cols=58 Identities=28% Similarity=0.301 Sum_probs=53.4
Q ss_pred CCCCCCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 39 RRGRQTYTRFQTLELEKEFHF---NHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 39 rr~R~~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
+++|++|+..|+.+|+.+|.. ++||+..++..||..+||++.||++||||||+|+|+.
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 455667999999999999999 9999999999999999999999999999999999974
No 66
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-17 Score=110.92 Aligned_cols=55 Identities=24% Similarity=0.246 Sum_probs=51.9
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 42 RQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 42 R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
+..||..|+.+|+..|..++||+..++..||..+||++++|++||||||+|+|+.
T Consensus 17 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred cccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 3449999999999999999999999999999999999999999999999999864
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=6e-18 Score=107.89 Aligned_cols=56 Identities=43% Similarity=0.710 Sum_probs=52.5
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 42 RQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 42 R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
-...+..|+..||..|..++||+..++.+||..+||++++|++||||||+|+|+..
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 34678999999999999999999999999999999999999999999999999754
No 68
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.68 E-value=4.7e-18 Score=115.57 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHH------------------hC---CCcccceeeeccchhhH
Q psy16978 35 GCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHA------------------LC---LTERQIKIWFQNRRMKL 93 (154)
Q Consensus 35 ~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~------------------l~---l~~~qV~~WFqNrRak~ 93 (154)
..+.|+.|+.|+..|+..|+..|..++||+..++.+||.. +| |++.+|++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3467889999999999999999999999999999999999 88 99999999999999999
Q ss_pred HHhHH
Q psy16978 94 KKELR 98 (154)
Q Consensus 94 kr~~~ 98 (154)
+++.+
T Consensus 86 k~k~~ 90 (99)
T 1lfb_A 86 AFRHK 90 (99)
T ss_dssp SCCC-
T ss_pred HHhch
Confidence 87643
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-17 Score=104.76 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHH
Q psy16978 43 QTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95 (154)
Q Consensus 43 ~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr 95 (154)
..++..|+..|+..|..++||+..++..||..+||++++|++||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34568999999999999999999999999999999999999999999999775
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=7.5e-18 Score=105.69 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=45.8
Q ss_pred HHHHHHHHHHh-hhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHH
Q psy16978 47 RFQTLELEKEF-HFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95 (154)
Q Consensus 47 ~~q~~~Le~~F-~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr 95 (154)
+.++..||..| ..++||+..++.+||..|||+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 44799999999 57899999999999999999999999999999999986
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.66 E-value=1.9e-17 Score=121.98 Aligned_cols=64 Identities=22% Similarity=0.296 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 34 NGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 34 ~~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
...++||.|+.|+..|+..|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 3456788999999999999999999999999999999999999999999999999999999753
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=2.1e-16 Score=100.11 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHhh---hcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhHH
Q psy16978 43 QTYTRFQTLELEKEFH---FNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 98 (154)
Q Consensus 43 ~~~t~~q~~~Le~~F~---~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~~ 98 (154)
..|+.+++.+|+.+|. .++||+..++..||..+||++.||++||+|+|+|+++...
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 3699999999999999 9999999999999999999999999999999999997643
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.51 E-value=1.5e-15 Score=114.58 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC---------------------CCcccceeeeccchhhHH
Q psy16978 36 CPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALC---------------------LTERQIKIWFQNRRMKLK 94 (154)
Q Consensus 36 ~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~---------------------l~~~qV~~WFqNrRak~k 94 (154)
.+.||.|+.|+..|+..|+..|..++||+..+|.+||..|+ |++.+|++||||||++++
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 45688999999999999999999999999999999999999 999999999999999876
Q ss_pred H
Q psy16978 95 K 95 (154)
Q Consensus 95 r 95 (154)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 3
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-14 Score=91.63 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhh
Q psy16978 47 RFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 92 (154)
Q Consensus 47 ~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak 92 (154)
..|+..|+.+|..+++|+..++..||..+||+.++|++||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 4689999999999999999999999999999999999999999985
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.46 E-value=3.3e-14 Score=94.41 Aligned_cols=54 Identities=19% Similarity=0.256 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHh
Q psy16978 43 QTYTRFQTLELEKEFHF---NHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96 (154)
Q Consensus 43 ~~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~ 96 (154)
..|+..++.+|+.+|.. ++||+..++.+||..+||++.||++||+|+|.|.++.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhH
Confidence 45889999999999987 9999999999999999999999999999999998864
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.43 E-value=4.3e-14 Score=108.02 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=53.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC---------------------CCcccceeeeccchhhH
Q psy16978 35 GCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALC---------------------LTERQIKIWFQNRRMKL 93 (154)
Q Consensus 35 ~~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~---------------------l~~~qV~~WFqNrRak~ 93 (154)
..+.||.|+.|+..|+.+|+..|..++||+..+|++||..|| |++.+|++||+|||+..
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 356788899999999999999999999999999999999988 89999999999999864
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.31 E-value=3.6e-13 Score=110.21 Aligned_cols=56 Identities=25% Similarity=0.412 Sum_probs=52.6
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHH
Q psy16978 39 RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94 (154)
Q Consensus 39 rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~k 94 (154)
++-++.++..|+..|+..|..++||+..+|.+||..+||+++||++||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45577899999999999999999999999999999999999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.84 E-value=3.2e-10 Score=63.04 Aligned_cols=19 Identities=79% Similarity=1.190 Sum_probs=16.7
Q ss_pred ccceeeeccchhhHHHhHH
Q psy16978 80 RQIKIWFQNRRMKLKKELR 98 (154)
Q Consensus 80 ~qV~~WFqNrRak~kr~~~ 98 (154)
+||+|||||||+|||+...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~ 19 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVF 19 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHH
T ss_pred CCceeccHHHHHHHHHHhH
Confidence 5899999999999998643
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.57 E-value=0.0045 Score=38.61 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeecc
Q psy16978 48 FQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQN 88 (154)
Q Consensus 48 ~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqN 88 (154)
.-...|+++|...+.+.......|+.+.+|+..||+-||-.
T Consensus 16 ~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 16 PDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 34589999999999999999999999999999999999953
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=79.75 E-value=1 Score=26.20 Aligned_cols=45 Identities=20% Similarity=0.348 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeec
Q psy16978 42 RQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQ 87 (154)
Q Consensus 42 R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFq 87 (154)
|..|+.+........+.. .........++|..+|++...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 446888876655444433 332112256899999999999999974
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=78.59 E-value=1.9 Score=28.76 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchh
Q psy16978 41 GRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 41 ~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
+|..+|.++...+...+..+..... .++|..+|++...|..|..++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 5678999998777777755555543 35799999999999999876554
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=73.48 E-value=4.1 Score=25.48 Aligned_cols=43 Identities=14% Similarity=0.315 Sum_probs=30.5
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeee
Q psy16978 39 RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWF 86 (154)
Q Consensus 39 rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WF 86 (154)
++.+..++.++.......+. ... ...++|..+|++...|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHH
Confidence 34566788887655555554 222 24578999999999999996
No 83
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=72.97 E-value=0.76 Score=29.38 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHHhhhc-CCCCHHHHHHHHHHhCCCcccceeeecc
Q psy16978 42 RQTYTRFQTLELEKEFHFN-HYLTRRRRIEIAHALCLTERQIKIWFQN 88 (154)
Q Consensus 42 R~~~t~~q~~~Le~~F~~~-~~p~~~~~~~La~~l~l~~~qV~~WFqN 88 (154)
|..|+.++.......+... .. ....+|..+|++...|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 3468888766555555322 22 2568899999999999999843
No 84
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=65.16 E-value=4.5 Score=25.36 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHH
Q psy16978 45 YTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95 (154)
Q Consensus 45 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr 95 (154)
++..+..+|...|-.. ....++|..+|++...|+.+...-|.+.|+
T Consensus 38 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5677777777655322 235678999999999999888655555554
No 85
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=64.80 E-value=6.6 Score=27.01 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=38.4
Q ss_pred CCCCCCCCHHHHHHHHHHh-hhcCCCCHHHHHHHH-HHh--CCCcccceeeeccc
Q psy16978 39 RRGRQTYTRFQTLELEKEF-HFNHYLTRRRRIEIA-HAL--CLTERQIKIWFQNR 89 (154)
Q Consensus 39 rr~R~~~t~~q~~~Le~~F-~~~~~p~~~~~~~La-~~l--~l~~~qV~~WFqNr 89 (154)
+++|.++|.+|...+-.++ +.++..+..+...+| ..+ +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 6788999999999999988 677777765544433 267 77888888887553
No 86
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=61.33 E-value=2.8 Score=22.66 Aligned_cols=41 Identities=7% Similarity=0.144 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccch
Q psy16978 45 YTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRR 90 (154)
Q Consensus 45 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR 90 (154)
++.++...+...+... . ...++|..+|++...|..|+....
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 4454544444444432 2 245789999999999999996443
No 87
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=60.39 E-value=7.1 Score=20.51 Aligned_cols=40 Identities=8% Similarity=0.222 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeecc
Q psy16978 44 TYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQN 88 (154)
Q Consensus 44 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqN 88 (154)
.++..+...+...+.. .. + ..++|..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~-g~-s---~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL-NV-S---LHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT-TC-C---HHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc-CC-C---HHHHHHHHCcCHHHHHHHHhh
Confidence 4667666555455532 22 2 557899999999999999753
No 88
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=55.44 E-value=0.21 Score=35.66 Aligned_cols=30 Identities=7% Similarity=-0.032 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCCCH
Q psy16978 36 CPRRRGRQTYTRFQTLELEKEFHFNHYLTR 65 (154)
Q Consensus 36 ~~~rr~R~~~t~~q~~~Le~~F~~~~~p~~ 65 (154)
.+.+|.|+.|+..|+..|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 567889999999999999999999998864
No 89
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=46.10 E-value=5.7 Score=23.05 Aligned_cols=46 Identities=15% Similarity=-0.060 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHH
Q psy16978 44 TYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94 (154)
Q Consensus 44 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~k 94 (154)
.+++.+..+|...|... ....++|..+|++...|+.+...-+.+.+
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 36788888888765332 22457899999999999988764444444
No 90
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=45.68 E-value=6.2 Score=27.29 Aligned_cols=41 Identities=12% Similarity=0.013 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchh
Q psy16978 49 QTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 49 q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
-+..-...|....| . .....||...|++...|-.+|.|+-.
T Consensus 20 Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 20 ILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHH
Confidence 35555666888888 5 67889999999999999999998753
No 91
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=45.55 E-value=17 Score=24.80 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCcccceeeeccch
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRR 90 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrR 90 (154)
...+|..+|++..+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 56789999999999999996444
No 92
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=45.39 E-value=16 Score=24.38 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHH
Q psy16978 45 YTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95 (154)
Q Consensus 45 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr 95 (154)
+++.+..++. .| .......++|..+|++...|+.+...-|.+.|+
T Consensus 110 L~~~~r~v~~-~~-----~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 110 FSKFEKEVLT-YL-----IRGYSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp SCHHHHHHHH-HH-----TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HH-----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4455555555 22 222345678999999999998887654544443
No 93
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=44.71 E-value=15 Score=23.68 Aligned_cols=45 Identities=18% Similarity=0.060 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhh
Q psy16978 42 RQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 92 (154)
Q Consensus 42 R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak 92 (154)
...++..+..+|.-.+. .+ ...++|..+|+++..|+.+..+-+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~~--G~----s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAE--GF----LVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHHH--TC----CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 44589999999977553 22 23689999999999999887644443
No 94
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=43.60 E-value=14 Score=23.54 Aligned_cols=46 Identities=11% Similarity=0.173 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHhhhcC--CCC-HHHHHHHHHHhCCCcccceeeec
Q psy16978 42 RQTYTRFQTLELEKEFHFNH--YLT-RRRRIEIAHALCLTERQIKIWFQ 87 (154)
Q Consensus 42 R~~~t~~q~~~Le~~F~~~~--~p~-~~~~~~La~~l~l~~~qV~~WFq 87 (154)
+..|+.++.......+.... +.+ ......+|..+|++...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 34588887654444442221 222 24567899999999999999963
No 95
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=40.65 E-value=11 Score=23.77 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHH
Q psy16978 44 TYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94 (154)
Q Consensus 44 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~k 94 (154)
.++..+..+|...+. .+ ...++|..+|++...|+.+..+-+.|.+
T Consensus 27 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGLLSE--GL----TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 588888888887532 22 2367899999999999987765554444
No 96
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=39.36 E-value=60 Score=21.76 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHHHhh-----hcCCCCHHHHHHHHHHhCCCcc
Q psy16978 41 GRQTYTRFQTLELEKEFH-----FNHYLTRRRRIEIAHALCLTER 80 (154)
Q Consensus 41 ~R~~~t~~q~~~Le~~F~-----~~~~p~~~~~~~La~~l~l~~~ 80 (154)
+|..+|.+|+..|...|. .+.+.+..+...+...+|....
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 355699999999999996 3568899988888888886553
No 97
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=39.27 E-value=11 Score=23.06 Aligned_cols=49 Identities=22% Similarity=0.127 Sum_probs=34.8
Q ss_pred CCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHH
Q psy16978 40 RGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94 (154)
Q Consensus 40 r~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~k 94 (154)
..-..++..+..+|...+ .. ....++|..+|++...|+.+..+-+.|.+
T Consensus 17 ~~~~~Lt~~e~~vl~l~~--~g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 17 RDVNQLTPRERDILKLIA--QG----LPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp CCGGGSCHHHHHHHHHHT--TT----CCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred HHHccCCHHHHHHHHHHH--cC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 334468899988888743 22 23567899999999999988765554444
No 98
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=38.70 E-value=17 Score=24.00 Aligned_cols=48 Identities=15% Similarity=0.015 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 45 YTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 45 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
+++.+..++...|.... ...++|..+|++...|+.|...-|.+.++..
T Consensus 23 L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 23 LTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp SCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 67778888877654332 2467899999999999999976666665543
No 99
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=37.43 E-value=17 Score=21.06 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHH
Q psy16978 44 TYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94 (154)
Q Consensus 44 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~k 94 (154)
.+++.+..+|...|....+- ...-.++|..+|++...|+.+...-+.+.+
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 36788888888887321111 122457899999999999987754444443
No 100
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=36.43 E-value=15 Score=16.68 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=11.5
Q ss_pred Ccccceeeeccchhh
Q psy16978 78 TERQIKIWFQNRRMK 92 (154)
Q Consensus 78 ~~~qV~~WFqNrRak 92 (154)
+...|.+-++|||.-
T Consensus 2 skkpvpiiycnrrtg 16 (21)
T 8tfv_A 2 SKKPVPIIYCNRRTG 16 (26)
T ss_dssp CCCCCCCEEEEGGGT
T ss_pred CCCcccEEEEcCccc
Confidence 356688889999874
No 101
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=35.28 E-value=13 Score=26.59 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHH
Q psy16978 45 YTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95 (154)
Q Consensus 45 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr 95 (154)
+++.+..+|...|-.. ....++|..+|++...|+.+...-|.+.|+
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 5666666776665321 234578999999999998887655555443
No 102
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=34.89 E-value=22 Score=20.54 Aligned_cols=47 Identities=21% Similarity=0.221 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHH
Q psy16978 42 RQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94 (154)
Q Consensus 42 R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~k 94 (154)
-..+++.+..+|...+ ..+ ...++|..+|++...|..+...-+.+.+
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 3458888988888743 222 3457899999999999888765444433
No 103
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=34.41 E-value=24 Score=20.74 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHH
Q psy16978 44 TYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94 (154)
Q Consensus 44 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~k 94 (154)
.+++.+..++...|..... ....-.++|..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4678888888888742100 0122357899999999999987754444433
No 104
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=33.38 E-value=66 Score=20.87 Aligned_cols=48 Identities=15% Similarity=-0.013 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHHHhH
Q psy16978 45 YTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97 (154)
Q Consensus 45 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~kr~~ 97 (154)
+++.+..++...|... ....++|..+|++...|+.+...-|.+.+...
T Consensus 26 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 6677778887765322 23467899999999999998876666665543
No 105
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=31.64 E-value=16 Score=26.89 Aligned_cols=52 Identities=15% Similarity=0.083 Sum_probs=33.3
Q ss_pred CCCCCCCCHHH-HHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchh
Q psy16978 39 RRGRQTYTRFQ-TLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 39 rr~R~~~t~~q-~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
+..|...+.+. +..-...|....+-. .....||..+|++...|-.+|.||-.
T Consensus 23 ~~~~~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~ 75 (241)
T 2hxi_A 23 MAGRRRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKTE 75 (241)
T ss_dssp -----CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHHH
Confidence 33444556554 344555576666544 33567899999999999999998743
No 106
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=31.09 E-value=81 Score=19.70 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=35.2
Q ss_pred CCCCCCCHHHHHHHHHHhh-----hcCCCCHHHHHHHHHHhCC--Ccccceeee
Q psy16978 40 RGRQTYTRFQTLELEKEFH-----FNHYLTRRRRIEIAHALCL--TERQIKIWF 86 (154)
Q Consensus 40 r~R~~~t~~q~~~Le~~F~-----~~~~p~~~~~~~La~~l~l--~~~qV~~WF 86 (154)
.....++.+++..|...|. .+.+.+..+...+...+|. +..+|..+|
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3445688999999999985 3568999999888888875 455555555
No 107
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=30.55 E-value=11 Score=21.22 Aligned_cols=24 Identities=21% Similarity=0.159 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCcccceeeeccchh
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
..+||..+|++...|..|..+++.
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~~ 40 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKYN 40 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 457999999999999999977653
No 108
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=30.11 E-value=17 Score=21.50 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHH
Q psy16978 45 YTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94 (154)
Q Consensus 45 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~k 94 (154)
+++.+..+|...+ ..+ ...++|..+|++...|+.+...-+.|.+
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4566777776633 222 2357899999999999988765554444
No 109
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=29.35 E-value=32 Score=23.92 Aligned_cols=41 Identities=5% Similarity=-0.111 Sum_probs=31.0
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchh
Q psy16978 50 TLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 50 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
+......|....|-. .....||...|++...|-.+|.++-.
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~ 74 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDD 74 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHH
Confidence 444555577777644 34668899999999999999998754
No 110
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=29.12 E-value=12 Score=21.16 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCcccceeeeccchh
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
..+||..+|++...|..|...++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 457999999999999999987654
No 111
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=28.87 E-value=71 Score=20.04 Aligned_cols=45 Identities=9% Similarity=-0.162 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCC-------Ccccceeeec
Q psy16978 43 QTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCL-------TERQIKIWFQ 87 (154)
Q Consensus 43 ~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l-------~~~qV~~WFq 87 (154)
..++.++...+......++..+..+........|+ +...|..|..
T Consensus 74 ~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHH
Confidence 35677677777777776666666554432222274 6677777764
No 112
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=28.35 E-value=16 Score=21.09 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCcccceeee
Q psy16978 68 RIEIAHALCLTERQIKIWF 86 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WF 86 (154)
...||..+|++..-|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999999999
No 113
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=28.25 E-value=11 Score=20.79 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeec
Q psy16978 47 RFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQ 87 (154)
Q Consensus 47 ~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFq 87 (154)
..+...+...+. ..+ ...++|..+|++...|..|..
T Consensus 18 ~~~~~~i~~l~~-~g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAK-MGY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHH-TTC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 444444444443 222 245789999999999988874
No 114
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=27.73 E-value=50 Score=23.93 Aligned_cols=52 Identities=10% Similarity=-0.056 Sum_probs=33.3
Q ss_pred CCCCCCCCHHH-HHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchh
Q psy16978 39 RRGRQTYTRFQ-TLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 39 rr~R~~~t~~q-~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
++.+...+.++ +..-...|....|-. .....||..+|++...|-..|.||-.
T Consensus 10 r~~~~~~~r~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~ 62 (237)
T 2hxo_A 10 ERRQEPLSRERIVGAAVELLDTVGERG-LTFRALAERLATGPGAIYWHITGKAE 62 (237)
T ss_dssp ------CCHHHHHHHHHHHHHHTTTTT-CCHHHHHHHHTSCGGGGGGTCCCHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHHCCChHHHHHhcCCHHH
Confidence 33344455543 445556677777644 33567899999999999999988644
No 115
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=27.71 E-value=13 Score=21.26 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCcccceeeeccchh
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
..+||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 457999999999999999987665
No 116
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=27.70 E-value=11 Score=22.55 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCcccceeeeccchh
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
..+||..+|++...|..|..+++.
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~~ 37 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGRV 37 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCC
Confidence 468999999999999999977653
No 117
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=26.44 E-value=16 Score=22.63 Aligned_cols=46 Identities=26% Similarity=0.143 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHH
Q psy16978 43 QTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94 (154)
Q Consensus 43 ~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~k 94 (154)
..++..+..+|.-.+ ..+. ..++|..+|++...|+.+..+-+.|.+
T Consensus 28 ~~Lt~~e~~vl~l~~--~g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 28 EMLTEREMEILLLIA--KGYS----NQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGCCSHHHHHHHHHH--TTCC----TTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHH--cCCC----HHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 357888888887743 2222 346899999999999988865555444
No 118
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=26.33 E-value=15 Score=21.39 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCcccceeeeccchh
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
..+||..+|++...|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 457999999999999999987653
No 119
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=25.71 E-value=40 Score=20.58 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHH
Q psy16978 45 YTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94 (154)
Q Consensus 45 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~k 94 (154)
+++.+..+|...|-.... ......++|..+|++...|+.+...-+.+.+
T Consensus 19 L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 677788888877742100 1122457899999999999998765444444
No 120
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=25.58 E-value=26 Score=24.15 Aligned_cols=28 Identities=14% Similarity=0.075 Sum_probs=21.3
Q ss_pred HHHHHHHhCCCcccceeeeccchhhHHH
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRRMKLKK 95 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrRak~kr 95 (154)
..++|..+|++...|+.+...-|.+.|+
T Consensus 159 ~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 159 YEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4578999999999999888655555443
No 121
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=25.47 E-value=15 Score=25.35 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=31.3
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhh
Q psy16978 50 TLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 92 (154)
Q Consensus 50 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak 92 (154)
+......|....|-. .....||...|++...+-.+|.++-.=
T Consensus 37 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L 78 (218)
T 3dcf_A 37 IKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKEDV 78 (218)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 445555577777654 336688999999999999999987543
No 122
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=24.91 E-value=16 Score=21.19 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCcccceeeeccchh
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
..+||..+|++...|..|...++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 457999999999999999977654
No 123
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=24.79 E-value=18 Score=21.97 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCcccceeeeccchhh
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRRMK 92 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrRak 92 (154)
..+||..||++..-|..|..++..-
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~iP 37 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEIP 37 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCC
Confidence 5689999999999999998654333
No 124
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.78 E-value=13 Score=20.98 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=20.0
Q ss_pred HHHHHHhCCCcccceeeeccchhhHH
Q psy16978 69 IEIAHALCLTERQIKIWFQNRRMKLK 94 (154)
Q Consensus 69 ~~La~~l~l~~~qV~~WFqNrRak~k 94 (154)
.++|..+|++...|+.+..+-+.|.+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 47899999999999988765444443
No 125
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=24.65 E-value=17 Score=21.16 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCcccceeeeccchh
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
..+||..+|++...|..|..+++.
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~~ 47 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDVQ 47 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 457999999999999999977643
No 126
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=24.33 E-value=21 Score=24.18 Aligned_cols=42 Identities=7% Similarity=-0.009 Sum_probs=31.9
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhh
Q psy16978 50 TLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 92 (154)
Q Consensus 50 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak 92 (154)
+......|....|-.. ....||...|++...|-..|.|+-.=
T Consensus 16 l~aa~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK~~L 57 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSGV-GLNEILQSAGVPKGSFYHYFKSKEQF 57 (197)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHTTTCSCHHHH
T ss_pred HHHHHHHHHHCCcccC-CHHHHHHHhCCChhhHHHHcCCHHHH
Confidence 4555566777776543 35678999999999999999988653
No 127
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=24.32 E-value=12 Score=26.65 Aligned_cols=42 Identities=12% Similarity=-0.004 Sum_probs=30.6
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhh
Q psy16978 50 TLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 92 (154)
Q Consensus 50 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak 92 (154)
+......|....|-.. ....||...|++...|-.+|.|+-.=
T Consensus 49 l~aA~~l~~~~G~~~~-tv~~IA~~AGvs~~t~Y~~F~sKe~L 90 (229)
T 3bni_A 49 LDACADLLDEVGYDAL-STRAVALRADVPIGSVYRFFGNKRQM 90 (229)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhcChhhc-cHHHHHHHHCCCchhHHHHcCCHHHH
Confidence 3344445777776543 35678999999999999999987543
No 128
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=24.26 E-value=17 Score=21.15 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCcccceeeeccchh
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
...||..+|++...|..|...++.
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~~ 49 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDRN 49 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCSC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCC
Confidence 457899999999999999977653
No 129
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.11 E-value=41 Score=24.59 Aligned_cols=50 Identities=8% Similarity=-0.010 Sum_probs=34.1
Q ss_pred CCCCCCCHHH-HHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccch
Q psy16978 40 RGRQTYTRFQ-TLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRR 90 (154)
Q Consensus 40 r~R~~~t~~q-~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR 90 (154)
..|...+.+. +..-...|....|-. .....||..+|++...|-..|.||-
T Consensus 14 ~~r~~~tr~~Il~AA~~l~~e~G~~~-~S~~~IA~~aGvs~~tlY~hF~sK~ 64 (243)
T 2g7l_A 14 PAKPALSRRWIVDTAVALMRAEGLEK-VTMRRLAQELDTGPASLYVYVANTA 64 (243)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHCSSS-CCHHHHHHHTTSCHHHHTTTCCSHH
T ss_pred CCCcccCHHHHHHHHHHHHHhcCchh-cCHHHHHHHHCCChhHHHHHcCCHH
Confidence 3344455553 445556677777644 3356789999999999999998874
No 130
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=23.66 E-value=54 Score=21.28 Aligned_cols=41 Identities=7% Similarity=0.218 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeecc
Q psy16978 43 QTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQN 88 (154)
Q Consensus 43 ~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqN 88 (154)
..++.++...+...+.. .. + ..++|..+|++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~-G~-s---~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL-NV-S---LHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHT-TC-C---HHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHc-CC-C---HHHHHHHHCcCHHHHHHHHHc
Confidence 45777777666666643 22 2 457899999999999999864
No 131
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=23.43 E-value=17 Score=20.53 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCcccceeeeccchh
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 457899999999999999977654
No 132
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=23.40 E-value=39 Score=20.64 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCCcccceeee
Q psy16978 44 TYTRFQTLELEKEFHF-----NHYLTRRRRIEIAHALCLTERQIKIWF 86 (154)
Q Consensus 44 ~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~~qV~~WF 86 (154)
.++.++...+...|.. +.+.+..+...+...+|++...|..+|
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 49 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 4677788888888853 446777777777777787766655544
No 133
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=23.15 E-value=36 Score=22.90 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=26.3
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhH
Q psy16978 50 TLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKL 93 (154)
Q Consensus 50 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~ 93 (154)
+..-...|....|-. .....||...|++...|-..|.|+..=.
T Consensus 18 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~L~ 60 (199)
T 3on2_A 18 LARAESTLEKDGVDG-LSLRQLAREAGVSHAAPSKHFRDRQALL 60 (199)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHTC-----CCCSSSSHHHHH
T ss_pred HHHHHHHHHhcChhh-hhHHHHHHHhCCChHHHHHHhCCHHHHH
Confidence 444555577766543 2356789999999999999999975443
No 134
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=22.97 E-value=57 Score=20.94 Aligned_cols=27 Identities=7% Similarity=-0.042 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCcccceeeeccchhhH
Q psy16978 67 RRIEIAHALCLTERQIKIWFQNRRMKL 93 (154)
Q Consensus 67 ~~~~La~~l~l~~~qV~~WFqNrRak~ 93 (154)
-++.|+.+.|++..+.+.+|..+--++
T Consensus 47 LK~~I~~k~Gip~~qQrLif~Gk~LkD 73 (93)
T 3plu_A 47 FKKVLSLQIGTQPNKIVLQKGGSVLKD 73 (93)
T ss_dssp HHHHHHHHHTCCGGGEEEEETTEECCT
T ss_pred HHHHHHHHhCCCHHHEEEEeCCEEccC
Confidence 356689999999999999998776554
No 135
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=22.80 E-value=25 Score=25.04 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=30.6
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhhHH
Q psy16978 51 LELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94 (154)
Q Consensus 51 ~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak~k 94 (154)
......|....|-. .....||...|++...|-..|.|+-.=..
T Consensus 51 ~aA~~lf~e~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L~~ 93 (236)
T 3q0w_A 51 ATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEAVLL 93 (236)
T ss_dssp HHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHcCccc-CCHHHHHHHhCCcHHHHHHHCCCHHHHHH
Confidence 34444477766633 33567899999999999999998854433
No 136
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=22.78 E-value=28 Score=23.96 Aligned_cols=41 Identities=12% Similarity=-0.018 Sum_probs=32.6
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhh
Q psy16978 50 TLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 92 (154)
Q Consensus 50 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak 92 (154)
+..-...|....| . .....||+..|++...|-.+|.|+-.=
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~L 59 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQAL 59 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 3444555888887 5 678899999999999999999998543
No 137
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=22.54 E-value=48 Score=22.67 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=31.8
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchh
Q psy16978 50 TLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 50 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
+......|....|-.. ....||...|++...+-.+|.|+-.
T Consensus 20 l~aA~~lf~~~G~~~~-s~~~Ia~~agvs~~t~Y~yF~sKe~ 60 (203)
T 3ccy_A 20 IERAAAMFARQGYSET-SIGDIARACECSKSRLYHYFDSKEA 60 (203)
T ss_dssp HHHHHHHHHHTCTTTS-CHHHHHHHTTCCGGGGTTTCSCHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCCcCeeeeeeCCHHH
Confidence 4455566888777553 3668899999999999999998743
No 138
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=22.45 E-value=19 Score=21.41 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCcccceeeeccchh
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 357999999999999999977654
No 139
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=22.31 E-value=32 Score=23.43 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=31.5
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhh
Q psy16978 50 TLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 92 (154)
Q Consensus 50 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak 92 (154)
+......|....|-. .....||...|++...|-..|.|+-.=
T Consensus 22 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L 63 (211)
T 3him_A 22 RAAAIEVFAAKGYGA-TTTREIAASLDMSPGAVYPHYKTKESL 63 (211)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHTTCCTTSSTTTCSSHHHH
T ss_pred HHHHHHHHHHcCCCc-CCHHHHHHHhCCCcChhhhcCCCHHHH
Confidence 445555677777654 336688999999999999999987543
No 140
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=22.22 E-value=19 Score=20.93 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCcccceeeeccch
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRR 90 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrR 90 (154)
...||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35789999999999999998776
No 141
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=22.21 E-value=52 Score=20.45 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=30.6
Q ss_pred CCCCCCCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccc
Q psy16978 39 RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNR 89 (154)
Q Consensus 39 rr~R~~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNr 89 (154)
......++..+..+|.-.+ ..+ ...++|..+|++...|+....+-
T Consensus 24 ~~~~~~Lt~rE~~Vl~l~~--~G~----s~~eIA~~L~iS~~TV~~~~~~i 68 (90)
T 3ulq_B 24 QKEQDVLTPRECLILQEVE--KGF----TNQEIADALHLSKRSIEYSLTSI 68 (90)
T ss_dssp -----CCCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHH
Confidence 3345569999999998765 222 35678999999999998766543
No 142
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=21.92 E-value=20 Score=21.77 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCCcccceeee
Q psy16978 42 RQTYTRFQTLELEKEFHF-----NHYLTRRRRIEIAHALCLTERQIKIWF 86 (154)
Q Consensus 42 R~~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~~qV~~WF 86 (154)
-..++..+...|...|.. +.+.+..+...+...+|++...|..+|
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~ 67 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVF 67 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHH
Confidence 345677788888888853 457788888888888887666655555
No 143
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=21.90 E-value=33 Score=23.46 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=31.5
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchhh
Q psy16978 50 TLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 92 (154)
Q Consensus 50 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRak 92 (154)
+......|....|-. .....||...|++...|-..|.|+-.=
T Consensus 23 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L 64 (207)
T 2rae_A 23 STVGIELFTEQGFDA-TSVDEVAEASGIARRTLFRYFPSKNAI 64 (207)
T ss_dssp HHHHHHHHHHHCTTT-SCHHHHHHHTTSCHHHHHHHCSSTTTG
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCcchHhhhCCCHHHH
Confidence 445555577777644 335688999999999999999998543
No 144
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=21.85 E-value=38 Score=23.94 Aligned_cols=42 Identities=10% Similarity=-0.018 Sum_probs=32.4
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHhCCCcccceeeeccchh
Q psy16978 49 QTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 49 q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
-+......|....|-.. ....||...|++...|-..|.++-.
T Consensus 35 Il~aA~~lf~~~G~~~~-t~~~IA~~Agvs~~t~Y~~F~sKe~ 76 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGT-SMEHLSKAAGISKSSIYHHVTGKEE 76 (230)
T ss_dssp HHHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHTTTCSSHHH
T ss_pred HHHHHHHHHHHcCcccc-CHHHHHHHHCCChhHHHHhCCCHHH
Confidence 35666677877777543 3567899999999999999998743
No 145
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=21.84 E-value=20 Score=20.55 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCcccceeeeccch
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRR 90 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrR 90 (154)
..+||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45789999999999999987764
No 146
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=21.61 E-value=18 Score=21.99 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=16.0
Q ss_pred HHHHHHHhCCCcccceeeec
Q psy16978 68 RIEIAHALCLTERQIKIWFQ 87 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFq 87 (154)
..++|+.+|++...|+.|-.
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 35688889999988888854
No 147
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=21.39 E-value=21 Score=22.06 Aligned_cols=24 Identities=17% Similarity=0.516 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCcccceeeeccchh
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRRM 91 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrRa 91 (154)
..+||..+|++...|..|...++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 457899999999999999977654
No 148
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=20.51 E-value=24 Score=20.64 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=18.4
Q ss_pred HHHHHHHhCCCcccceeeeccch
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRR 90 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrR 90 (154)
..++|..||++...|..|-.+..
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTTTC
T ss_pred HHHHHHHHCcCHHHHHHHHHCCC
Confidence 35789999999999999886543
No 149
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=20.45 E-value=23 Score=21.31 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCcccceeeeccch
Q psy16978 68 RIEIAHALCLTERQIKIWFQNRR 90 (154)
Q Consensus 68 ~~~La~~l~l~~~qV~~WFqNrR 90 (154)
..+||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999998775
No 150
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=20.13 E-value=1.7e+02 Score=19.53 Aligned_cols=46 Identities=7% Similarity=-0.102 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHhhhcCCCCHHHHHH-HHHH------hCCCcccceeeec
Q psy16978 42 RQTYTRFQTLELEKEFHFNHYLTRRRRIE-IAHA------LCLTERQIKIWFQ 87 (154)
Q Consensus 42 R~~~t~~q~~~Le~~F~~~~~p~~~~~~~-La~~------l~l~~~qV~~WFq 87 (154)
+..++.+....+......++..+..+... |... ..++...|..|..
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 34567777777777777676666665443 3222 1356777777764
Done!