RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16978
(154 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 78.7 bits (194), Expect = 9e-21
Identities = 41/68 (60%), Positives = 49/68 (72%)
Query: 31 SGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRR 90
+ + R+ R YT+ QTLELEKEF FN YLTR RR E+A L LTERQ+KIWFQNRR
Sbjct: 6 NWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRR 65
Query: 91 MKLKKELR 98
MK+KK +
Sbjct: 66 MKMKKINK 73
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 76.7 bits (189), Expect = 2e-20
Identities = 51/55 (92%), Positives = 52/55 (94%)
Query: 42 RQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96
RQTYTR+QTLELEKEFHFN YLTRRRRIEIAHAL LTERQIKIWFQNRRMK KKE
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 77.7 bits (191), Expect = 3e-20
Identities = 40/70 (57%), Positives = 44/70 (62%)
Query: 29 KQSGPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQN 88
K S P R +T Q ELEKEFHFN YL+R RR+EIA L L E Q+KIWFQN
Sbjct: 18 KVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQN 77
Query: 89 RRMKLKKELR 98
RRMK KK R
Sbjct: 78 RRMKQKKRER 87
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 74.4 bits (183), Expect = 3e-19
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 39 RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 98
+R R ++T+ Q LEKEF HY R +A + L E +I++WF NRR K ++E +
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61
Query: 99 A 99
Sbjct: 62 L 62
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 72.9 bits (179), Expect = 9e-19
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 39 RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95
+ G+ ++ QT+ELEK+F YL+ R +A L L+ERQ+K WFQNRR K ++
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 70.7 bits (173), Expect = 5e-18
Identities = 28/57 (49%), Positives = 41/57 (71%)
Query: 39 RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95
R+ R Y++ Q ELE+E+ N ++T+ +R +I+ A L+ERQI IWFQNRR+K KK
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 67.6 bits (165), Expect = 8e-17
Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 40 RGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 92
R R ++ Q L++EF+ N YLT RRR +++ L L E QIKIWFQN R K
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 66.5 bits (162), Expect = 3e-16
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 38 RRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97
+RR R T++ Q ELE+ F Y R E+A LTE +I++WFQNRR +L+K+
Sbjct: 2 QRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 61
Query: 98 RAV 100
+V
Sbjct: 62 TSV 64
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 65.2 bits (159), Expect = 9e-16
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 38 RRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97
R R Q L + N + ++ L+ R I++WFQN+R K KK
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62
Query: 98 RAVK 101
+K
Sbjct: 63 IMMK 66
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 64.9 bits (158), Expect = 1e-15
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 40 RGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96
R R +TR Q LEKEF+ +Y++R RR E+A L L E IK+WFQNRRMK K++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 64.6 bits (157), Expect = 2e-15
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 39 RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELR 98
RR R T+T Q ELE+ F YLT R +++ L L Q+KIWF+NRR + K +
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
Query: 99 AVKE 102
K+
Sbjct: 62 QHKD 65
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 64.0 bits (156), Expect = 2e-15
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 46 TRFQTLELEKEF-HFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95
T LEK F + +R ++ L R I+ WF+ RR + K
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 63.8 bits (155), Expect = 3e-15
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 39 RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95
R+ R +T Q L LE++F YL+ R E + +L LTE Q+KIWFQNRR K K+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 63.0 bits (153), Expect = 5e-15
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 42 RQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRR 90
R +T Q L F N ++ +I I+ L L + +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 62.8 bits (153), Expect = 7e-15
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 39 RRGRQTYTRFQTLELEKEF---HFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95
+ R + T + + Y T + +IA LT Q+ WF N R ++ +
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 63.1 bits (153), Expect = 1e-14
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 32 GPNGCPR--RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNR 89
+G P R+ R +T+ QT ELE+ F YL+ R +A + LT Q+KIWFQN
Sbjct: 1 ASDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNH 60
Query: 90 RMKLKKELR 98
R K K+
Sbjct: 61 RYKTKRAQN 69
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 63.1 bits (153), Expect = 1e-14
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 15/76 (19%)
Query: 39 RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIA---------------HALCLTERQIK 83
R R T+ + +E F+ N Y +R EIA +T ++
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 60
Query: 84 IWFQNRRMKLKKELRA 99
WF NRR ++K+
Sbjct: 61 NWFANRRKEIKRRANI 76
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 61.9 bits (150), Expect = 2e-14
Identities = 24/58 (41%), Positives = 32/58 (55%)
Query: 39 RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96
RR R +T Q +LE F N Y R EIA LTE ++++WF+NRR K +K
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 61.1 bits (148), Expect = 5e-14
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 38 RRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKEL 97
RR+ R +++ Q ELE+ F YL+ R +A + LT Q+KIWFQN R K+K++
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61
Query: 98 R 98
+
Sbjct: 62 K 62
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 60.3 bits (146), Expect = 7e-14
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 42 RQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94
+ + + LE+ F L + + E+A +T Q+++WF N+RM+ K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 60.5 bits (146), Expect = 8e-14
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 32 GPNGCPRRRGRQTYTRFQTLELEKEFH-FNHYLTRRRRIEIAHALCLTERQIKIWFQNRR 90
G +G R R + L+ H Y + ++ L L + I +FQN+R
Sbjct: 1 GSSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQR 60
Query: 91 MKLKKE 96
+K
Sbjct: 61 YHVKHS 66
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 60.0 bits (145), Expect = 1e-13
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 39 RRGRQTYTRFQTLELEKEFHF-NHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKE 96
G T T Q LE F+ N + IA LTE Q + WF+ R + ++
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 58.4 bits (141), Expect = 3e-13
Identities = 14/56 (25%), Positives = 28/56 (50%)
Query: 40 RGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95
+ R T + LE+ F + + + + +A L L + +++WF NRR + K+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 58.3 bits (141), Expect = 5e-13
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 39 RRGRQTYTRFQTLELEKEFHFN---HYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95
R R +T+ LE F N YL + + L+ QIK W NRR K K
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 56.7 bits (137), Expect = 1e-12
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 40 RGRQTYTRFQTLELEKEF-HFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94
+ LEK F Y +R ++ L + R+I+ WF++RR + K
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 57.3 bits (138), Expect = 2e-12
Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 4/71 (5%)
Query: 30 QSGPNGCPRRRGRQTYTRFQTLELEKEFH----FNHYLTRRRRIEIAHALCLTERQIKIW 85
+G +R R +T Q ++ + + + +KIW
Sbjct: 9 NPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIW 68
Query: 86 FQNRRMKLKKE 96
N +
Sbjct: 69 MHNNKNSGPSS 79
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 56.6 bits (136), Expect = 3e-12
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 38 RRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95
R+R R + LE F + ++ IA+ L L + +++WF NRR K K+
Sbjct: 8 RKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKR 65
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 56.5 bits (136), Expect = 3e-12
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 39 RRGRQTYTRFQTLELEK---EFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95
RR R+ + + T L + N Y + + E+A +T Q+ WF N+R++ KK
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 96 ELRAVKE 102
+ +E
Sbjct: 62 NIGKFQE 68
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 56.3 bits (135), Expect = 4e-12
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 33 PNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 92
P+ P++ T Q L+ F + LT + LT R+I WF ++
Sbjct: 1 PDFTPQKFKE--KTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKS 58
Query: 93 LKKELRAVK 101
+ ++
Sbjct: 59 KALKEEKME 67
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 49.6 bits (118), Expect = 9e-10
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 42 RQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 95
R + + LEK F N T IA L + + I++WF NRR K K+
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 47.0 bits (111), Expect = 1e-08
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 32 GPNGCPRRRGRQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRM 91
G +G +R T+ Q L+ F + R ++ L +I WF + R
Sbjct: 1 GSSGSSGKR----KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRY 56
Query: 92 KLKK 95
LK
Sbjct: 57 ALKH 60
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 46.7 bits (110), Expect = 2e-08
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 21/78 (26%)
Query: 42 RQTYTRFQTLELEKEFHFNHYLTRRRRIEIAHAL---------------------CLTER 80
R + L + + ++ R + +TE
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 81 QIKIWFQNRRMKLKKELR 98
++ WF NRR + +
Sbjct: 61 RVYNWFANRRKEEAFRHK 78
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 239
Score = 25.2 bits (54), Expect = 3.8
Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 8/99 (8%)
Query: 1 MCFPLEIRFTHQLVIVLNVHFAKMLCQLKQSGPNGCPRRRGRQTYTRFQTLELEK----- 55
F E + V + K + P + +YT+
Sbjct: 144 NIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMK 203
Query: 56 EFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLK 94
E + RRR+ + + + R I ++ + +K++
Sbjct: 204 ELDNDILGVMRRRV---YDINGSVRDINVYLNGKSLKIR 239
>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo
sapiens) [TaxId: 9606]}
Length = 320
Score = 25.1 bits (54), Expect = 4.0
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 90 RMKLKKELRAVKEINEQARREREEQDRLKQEKHAKMDHHSH 130
K + A+K + + ++ + EK H
Sbjct: 22 EFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEH 62
>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus
pneumoniae, Ermam [TaxId: 1313]}
Length = 245
Score = 24.9 bits (53), Expect = 5.0
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 63 LTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAVKEINEQARREREEQDRLKQ 119
LTR L + W +L + + + A+ +Q
Sbjct: 175 LTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKN-QFHQAMKHAKVNNLSTITYEQ 230
>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor
receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 24.5 bits (52), Expect = 6.2
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 99 AVKEINEQARREREEQDRLKQEKHAKMDHHSHHQSMMGGLDKNSDLLKAVVTKVQ 153
AVK + E A + + + HH + +++G K L +V +
Sbjct: 47 AVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCK 101
>d1g4us2 c.45.1.2 (S:297-539) SptP tyrosine phosphatase, catalytic
domain {Salmonella typhimurium [TaxId: 90371]}
Length = 243
Score = 24.3 bits (52), Expect = 8.5
Identities = 7/63 (11%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 12 QLVIVLNVHFAKMLCQLKQSGPNGCPR-RRGRQTYTRFQTLELEKEFHFNHYLTRRRRIE 70
++++ +L Q P RG T+ T + + ++
Sbjct: 66 KMLLEKECSCLVVLTSEDQMQAKQLPPYFRGSYTFGEVHTNSQKVSSASQGEAIDQYNMQ 125
Query: 71 IAH 73
++
Sbjct: 126 LSC 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.135 0.403
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 575,620
Number of extensions: 26429
Number of successful extensions: 241
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 77
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (22.8 bits)