BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16979
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 54 STRRFGQIPSIAFPADEAPDAQ--CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ 111
S+ GQ+PS F + Q CV+C+ F+ + ++ L C+H+FH++C++ WL+ +
Sbjct: 2 SSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR 61
Query: 112 HCP 114
CP
Sbjct: 62 TCP 64
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+C +C + GE V++L C+H FH C+ PWL + CP
Sbjct: 17 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCP 56
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+C ICL+ + GE+V+ L C H FH C++ WL + CP
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCP 55
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 52 PFSTRRFGQIPSIAFPADEAPDAQ---CVICLAPFQPGEEVKELLCHHKFHSECLEPWLR 108
P S +P I D Q C IC + + G+ EL CHH FH C+ WL+
Sbjct: 16 PASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ 75
Query: 109 ERQHCP 114
+ CP
Sbjct: 76 KSGTCP 81
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 74 AQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHCP 114
+C +CLA + GEE + L C H FH+EC++ WL CP
Sbjct: 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCP 47
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
C +CL F+P +E+ C H FH +CL WL R+ CP
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCP 56
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 93 LCHHKFHSECLEPWLRERQHCP 114
+C+H FH C+ WL+ RQ CP
Sbjct: 74 VCNHAFHFHCISRWLKTRQVCP 95
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 93 LCHHKFHSECLEPWLRERQHCP 114
+C+H FH C+ WL+ RQ CP
Sbjct: 72 VCNHAFHFHCISRWLKTRQVCP 93
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 93 LCHHKFHSECLEPWLRERQHCP 114
+C+H FH C+ WL+ RQ CP
Sbjct: 83 VCNHAFHFHCISRWLKTRQVCP 104
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 93 LCHHKFHSECLEPWLRERQHCP 114
+C+H FH C+ WL+ RQ CP
Sbjct: 72 VCNHAFHFHCISRWLKTRQVCP 93
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 32.3 bits (72), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 93 LCHHKFHSECLEPWLRERQHCP 114
+C+H FH C+ WL+ RQ CP
Sbjct: 64 VCNHAFHFHCISRWLKTRQVCP 85
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 93 LCHHKFHSECLEPWLRERQHCP 114
+C+H FH C+ WL+ RQ CP
Sbjct: 66 VCNHAFHFHCISRWLKTRQVCP 87
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 93 LCHHKFHSECLEPWLRERQHCP 114
+C+H FH C+ WL+ RQ CP
Sbjct: 56 VCNHAFHFHCISRWLKTRQVCP 77
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+ QC+IC F E L C H F S C+ W++ + CP
Sbjct: 53 ELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECP 91
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+ QC+IC F E L C H F S C+ W++ + CP
Sbjct: 53 ELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECP 91
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+ QC+IC F E L C H F S C+ W++ + CP
Sbjct: 64 ELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECP 102
>pdb|1WTB|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D (Auf1) With Telomere Dna
pdb|1X0F|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D(Auf1) With Telomeric Dna
Length = 79
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 32 ISRRYNDALSLDSELSPPRAPFSTRRFGQIPSIAFPADEAPDAQCVICLAPFQPGEEVKE 91
+ + + LS D+ R F FG++ SI P D + + C F+ E VK+
Sbjct: 1 VKKIFVGGLSPDTPEEKIREYFGG--FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 58
Query: 92 LLCHHKFHSECL 103
++ K+H+ L
Sbjct: 59 IM-EKKYHNVGL 69
>pdb|2EGZ|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2EGZ|C Chain C, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|C Chain C, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
Length = 219
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 25 IIDRFLNISRRYNDALSL---DSELSPPRAPF-----STRRFGQIPSIAFPADEAPDAQC 76
++ + NI++ L + + EL+PP R+G IP IA A+ D
Sbjct: 96 LLVKLYNITKEAGKKLIISYHNFELTPPNWIIREVLREGYRYGGIPKIAVKANSYEDVAR 155
Query: 77 VICLAPFQPGEEV 89
++C++ GE++
Sbjct: 156 LLCISRQVEGEKI 168
>pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rna-Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein D0 (Auf1)
Length = 75
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 58 FGQIPSIAFPADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECL 103
FG++ SI P D + + C F+ E VK+++ K+H+ L
Sbjct: 23 FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM-EKKYHNVGL 67
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 57 RFGQIPSIAFPADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSE 101
R+GQ P+I D D + V + G E+ + + KF SE
Sbjct: 71 RYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKFFSE 115
>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2: Se-Met Derivative
Length = 342
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 57 RFGQIPSIAFPADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSE 101
R+GQ P+I D D + V + G E+ + + KF SE
Sbjct: 71 RYGQHPNIITLKDVYDDGKYVYVVTELXKGGELLDKILRQKFFSE 115
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 94 CHHKFHSECLEPWLRERQHCP 114
C+H FH+ C+ W+++ CP
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCP 68
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 72 PDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
P CV+C F + E C H F C+ +L ++CP
Sbjct: 10 PHLMCVLCGGYFIDATTIIE--CLHSFCKTCIVRYLETSKYCP 50
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 72 PDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
P CV+C F + E C H F C+ +L ++CP
Sbjct: 14 PHLMCVLCGGYFIDATTIIE--CLHSFCKTCIVRYLETSKYCP 54
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 72 PDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
P CV+C F + E C H F C+ +L ++CP
Sbjct: 14 PHLMCVLCGGYFIDATTIIE--CLHSFCKTCIVRYLETSKYCP 54
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 73 DAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRERQHCP 114
+ C ICL V +L C H H C E L+E CP
Sbjct: 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCP 47
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 57 RFGQIPSIAFPADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSE 101
R+GQ P+I D D + V + G E+ + + KF SE
Sbjct: 76 RYGQHPNIITLKDVYDDGKHVYLVTELMRGGELLDKILRQKFFSE 120
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+C ICL P L C H F C+ W+R+ CP
Sbjct: 7 RCPICLE--DPSNYSMALPCLHAFCYVCITRWIRQNPTCP 44
>pdb|3STO|A Chain A, Serpin From The Trematode Schistosoma Haematobium
Length = 406
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 24 IIIDRFLNISRRYNDALSLDSELSPPRAPFSTR 56
I +++ + RR+N++++ DSE + FS R
Sbjct: 121 IFVEKTYEVERRFNESIANDSEGELKQVDFSNR 153
>pdb|3SOK|A Chain A, Dichelobacter Nodosus Pilin Fima
pdb|3SOK|B Chain B, Dichelobacter Nodosus Pilin Fima
Length = 151
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 7 GFNTSGFIIYHGAMGETIIIDRFLNISRRYNDA 39
G T+G I +G+ +++D+F+N S +YN+
Sbjct: 104 GQGTAGEKISKLIVGKKLVLDQFVNGSYKYNEG 136
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 69 DEAPDAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRERQHCP 114
+ C ICL V +L C H H C E L+E CP
Sbjct: 1 ENVSQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCP 47
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 74 AQCVICLAPF----QPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
C IC+ + Q G + C H F S+CL L+ CP
Sbjct: 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 55
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 68 ADEAPDAQCVICLAPF----QPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
A + C IC+ + Q G + C H F S+CL L+ CP
Sbjct: 2 AMGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 52
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 74 AQCVICLAPF----QPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
C IC+ + Q G + C H F S+CL L+ CP
Sbjct: 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 117
>pdb|2LLX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Polypeptide Chain Release Factor Erf1
Length = 150
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 68 ADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE 109
+E + + I PF+P LC +KFH+E L L +
Sbjct: 102 TEEGKEKKVNIDFEPFKP-INTSLYLCDNKFHTEALTALLSD 142
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 75 QCVICLAPFQPGEEVKELL---CHHKFHSECLEPWLRE 109
+C +C Q GE+ K L+ C +H+ CL+P ++
Sbjct: 53 ECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKS 90
>pdb|2XNC|A Chain A, Crystal Structure Of An Engineered Ferredoxin Nadp
Reductase (Fnr) From Pisum Sativum
pdb|2XNC|B Chain B, Crystal Structure Of An Engineered Ferredoxin Nadp
Reductase (Fnr) From Pisum Sativum
Length = 315
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 58 FGQIPSIAFPADEAPDAQCVICLAPFQPGEEVK 90
FG +++ PD C L +PG EVK
Sbjct: 114 FGDSKTVSLCVKRVPDGVCSNFLCDLKPGSEVK 146
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 74 AQCVICLAPF----QPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
C IC+ + Q G + C H F S+CL L+ CP
Sbjct: 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 60
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 74 AQCVICLAPF----QPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
C IC+ + Q G + C H F S+CL L+ CP
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,781,593
Number of Sequences: 62578
Number of extensions: 139889
Number of successful extensions: 265
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 45
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)