BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16979
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2
SV=2
Length = 404
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 71 APDA-QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
PD C +C+ P++P + V+ L C+H FH C++PWL E + CP
Sbjct: 254 GPDGDSCAVCIEPYKPSDVVRILTCNHFFHKNCIDPWLLEHRTCP 298
>sp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana GN=RIE1
PE=2 SV=1
Length = 359
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 71 APDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
A DA C ICL+ ++ G E+ L C+H FHS C+ WL+ R CP
Sbjct: 302 AEDADCCICLSSYEDGAELHALPCNHHFHSTCIVKWLKMRATCP 345
>sp|O22755|ATL44_ARATH RING-H2 finger protein ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2
SV=1
Length = 185
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 37 NDALSLDSELSPPRAPFSTRRFGQIPSIAFPADEAPDAQCVICLAPFQPGEEVKEL-LCH 95
N L + S PR+ F+ + A+E +C ICL F GEE++ L LC
Sbjct: 67 NKGLKKKALQSLPRSTFTAAE----STSGAAAEEGDSTECAICLTDFADGEEIRVLPLCG 122
Query: 96 HKFHSECLEPWLRERQHCP 114
H FH EC++ WL R CP
Sbjct: 123 HSFHVECIDKWLVSRSSCP 141
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 48 PPRAPFSTRRF-GQIPSIAFPADE----APDAQCVICLAPFQPGEEVKELLCHHKFHSEC 102
PPRAP +++ ++P I F + +A+C IC G++++EL C H FH C
Sbjct: 197 PPRAPPASKEVVEKLPVIIFTEELLKKFGAEAECCICKENLVIGDKMQELPCKHTFHPPC 256
Query: 103 LEPWLRERQHCP 114
L+PWL E CP
Sbjct: 257 LKPWLDEHNSCP 268
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 30 LNISRRYNDALSLDSELSPPRAPFSTRRFGQIPSIAFPADEAPDA-QCVICLAPFQPGEE 88
++I D D L PP S + +P + ++A A +C +CL F+ GE
Sbjct: 35 MDIDLGAVDFTEWDQRLPPPA---SKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGET 91
Query: 89 VKELLCHHKFHSECLEPWLRERQHCP 114
V++L C H FHS C+ PWL + CP
Sbjct: 92 VRQLPCEHLFHSACILPWLGKTNSCP 117
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 38 DALSLDSELSPPRAPFSTRRFGQIPSIAFPADEAPDA-QCVICLAPFQPGEEVKELLCHH 96
D D L PP A + +P + ++A A +C +CL F+ GE V++L C H
Sbjct: 43 DFTEWDQRLPPPAA---KKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEH 99
Query: 97 KFHSECLEPWLRERQHCP 114
FHS C+ PWL + CP
Sbjct: 100 LFHSSCILPWLGKTNSCP 117
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
C IC+ ++P + ++ L C H+FH C++PWL E + CP
Sbjct: 303 CAICIEAYKPTDTIRILPCKHEFHKNCIDPWLIEHRTCP 341
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 23/110 (20%)
Query: 19 AMGETIIID------------RFLNISRRYNDALSLDSELSPPRAPFSTRRFGQIPSIAF 66
AMG TI +D LN++ R DA PR + Q+PS F
Sbjct: 318 AMGPTISLDLDVDDVEMENYEALLNLAERLGDAK--------PRG-LTKADIEQLPSYRF 368
Query: 67 PADEAPDAQ--CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
D Q CV+C + F+ + ++ L C+H+FH++C++ WL+ + CP
Sbjct: 369 NPDSHQSEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCP 418
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 52 PFSTRRFGQIPSIAFPAD--EAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE 109
P S +P++ D ++ QC +C+ F+ G +VK++ C H FH +CL PWL
Sbjct: 190 PASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLEL 249
Query: 110 RQHCP 114
CP
Sbjct: 250 HNSCP 254
>sp|Q6AY01|RN133_RAT E3 ubiquitin-protein ligase RNF133 OS=Rattus norvegicus GN=Rnf133
PE=2 SV=1
Length = 381
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 56 RRFGQIP-SIAFPADE--APDA-QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ 111
+ FGQ+ I DE +P+A CVIC ++P E V+ L C H FH C++PW+
Sbjct: 232 KAFGQLQVRILKEGDEEVSPNADSCVICFEAYKPNEIVRILTCKHFFHKNCIDPWILAHG 291
Query: 112 HCP 114
CP
Sbjct: 292 TCP 294
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%)
Query: 46 LSPPRAPFSTRRFGQIPSIAFPADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEP 105
L+P + ++P A +C+ICL F G EV+ L C H FH EC++
Sbjct: 205 LTPAQTEAVEALIQELPKFRLKAVPDDCGECLICLEEFHIGHEVRGLPCAHNFHVECIDQ 264
Query: 106 WLRERQHCP 114
WLR CP
Sbjct: 265 WLRLNVKCP 273
>sp|Q29RU0|RN128_BOVIN E3 ubiquitin-protein ligase RNF128 OS=Bos taurus GN=RNF128 PE=2
SV=1
Length = 431
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 71 APDA-QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
PD C +C+ ++P + V+ L C+H FH C++PWL E + CP
Sbjct: 274 GPDGDSCAVCIELYKPNDLVRILTCNHVFHKTCVDPWLLEHRTCP 318
>sp|Q5RF74|RN128_PONAB E3 ubiquitin-protein ligase RNF128 OS=Pongo abelii GN=RNF128 PE=2
SV=1
Length = 428
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 71 APDA-QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
PD C +C+ ++P + V+ L C+H FH C++PWL E + CP
Sbjct: 271 GPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCP 315
>sp|Q8TEB7|RN128_HUMAN E3 ubiquitin-protein ligase RNF128 OS=Homo sapiens GN=RNF128 PE=1
SV=1
Length = 428
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 71 APDA-QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
PD C +C+ ++P + V+ L C+H FH C++PWL E + CP
Sbjct: 271 GPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCP 315
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 60 QIPSIAFPADEAPDAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHCP 114
+IP + C +CL FQ GE V+ L CHH FH C++ WLR CP
Sbjct: 160 RIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCP 215
>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana
GN=At4g11680 PE=2 SV=1
Length = 390
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
DA+C ICL ++ G E++EL C+H FH C++ WL CP
Sbjct: 335 DAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCP 376
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 41 SLDSELSPPRAPFSTRRFGQIPSIAF-PADEAPDAQCVICLAPFQPGEEVKELLCHHKFH 99
+D E+ P A S R ++P +DE D +C +C P + G++ + L C H+FH
Sbjct: 36 GIDMEIEVPEA--SKRAILELPVHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFH 93
Query: 100 SECLEPWLRERQHCP 114
EC+ WL++ CP
Sbjct: 94 EECILLWLKKTNSCP 108
>sp|Q9D304|RN128_MOUSE E3 ubiquitin-protein ligase RNF128 OS=Mus musculus GN=Rnf128 PE=1
SV=1
Length = 428
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 71 APDA-QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
PD C +C+ ++P + V+ L C+H FH C++PWL E + CP
Sbjct: 271 GPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCP 315
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 18 GAMGETIIIDRFLNISRRYNDALSLDSELSPPRAPFSTRRFGQIPSIAFPADEAPDA-QC 76
GA G II + LN ++ + PP P T + +P+I + +C
Sbjct: 180 GANGLDTIITQLLN---QFENT-------GPP--PADTEKIQALPTIQITEEHVGSGLEC 227
Query: 77 VICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+C + GE V++L C+H FH++C+ PWL + CP
Sbjct: 228 PVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCP 265
>sp|Q14B02|RN133_MOUSE E3 ubiquitin-protein ligase RNF133 OS=Mus musculus GN=Rnf133 PE=1
SV=1
Length = 382
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 56 RRFGQIP-SIAFPADEA--PDA-QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ 111
+ FGQ+ + DE P+A CVIC ++P E V+ L C H FH C++PW+
Sbjct: 232 KAFGQLQVRVLKEGDEEVNPNADSCVICFEAYKPNEIVRILTCKHFFHKNCIDPWILAHG 291
Query: 112 HCP 114
CP
Sbjct: 292 TCP 294
>sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana
GN=At1g12760 PE=2 SV=1
Length = 408
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
DA+C ICL+ ++ G E++EL C H FH C++ WL CP
Sbjct: 350 DAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCP 391
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 18/129 (13%)
Query: 4 EDDGFNTSGFIIYHGAMGETI-------IIDRFLNISRRY------NDALSLDSELSPPR 50
D F+T+ II + I + L I+RR+ ++A + ++ L
Sbjct: 25 NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84
Query: 51 APFSTRR--FGQIPSIAFPAD--EAPDAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEP 105
A ++ QIP + + + +C+ICL F+ GE+V+ L C+H FH C++
Sbjct: 85 AATGLKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDT 144
Query: 106 WLRERQHCP 114
WL R CP
Sbjct: 145 WLLSRSSCP 153
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 58 FGQIPSIAFPADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ-HCP 114
++ S + + A D C++CL+ + GEEV++L C H FH +CLE WL+ +CP
Sbjct: 58 LNRLFSYRYSDNAASD--CIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCP 113
>sp|Q9ZT50|RHA2A_ARATH E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A
PE=1 SV=1
Length = 155
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE 109
+ CV+CL+ + GEEV++L C H FH +CLE WL +
Sbjct: 84 SDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQ 119
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
QC +C+ F+ G E K++ C H +H +CL PWL CP
Sbjct: 223 QCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCP 262
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 60 QIPSIAFPADEAPDAQ-----CVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHC 113
+IP + + DA C +CL FQ GE V+ L CHH FH C++ WL C
Sbjct: 175 KIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSC 234
Query: 114 P 114
P
Sbjct: 235 P 235
>sp|Q8N7C7|RN148_HUMAN RING finger protein 148 OS=Homo sapiens GN=RNF148 PE=2 SV=2
Length = 305
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 49 PRAPFS-TRRFGQIPS------------IAFPADEAPDAQ---CVICLAPFQPGEEVKEL 92
PR P S TRR QI + + DE D CV+C ++P + V+ L
Sbjct: 215 PRVPNSFTRRRSQIKTDVKKAIDQLQLRVLKEGDEELDLNEDNCVVCFDTYKPQDVVRIL 274
Query: 93 LCHHKFHSECLEPWLRERQHCP 114
C H FH C++PWL + CP
Sbjct: 275 TCKHFFHKACIDPWLLAHRTCP 296
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 30 LNISRRYNDALSLDSELSPPRAPFSTRRFGQIPSIAFPADEAPDAQCVICLAPFQPGEEV 89
L+I D D L PP A + + I P +C +CL F+ E V
Sbjct: 35 LDIDSGSFDLSDWDQRLPPPAAKAVVQSLPVV--IISPEQADKGVKCPVCLLEFEEQESV 92
Query: 90 KELLCHHKFHSECLEPWLRERQHCP 114
+E+ C H FH+ C+ PWL + CP
Sbjct: 93 REMPCKHLFHTGCILPWLNKTNSCP 117
>sp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2
SV=1
Length = 159
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 50 RAPFSTRRFGQIPSIAFPADEAPDA--QCVICLAPFQPGEEVKELL-CHHKFHSECLEPW 106
RA R + P + + E A +C ICL F GE V+ L C+H FH C++ W
Sbjct: 77 RAGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTW 136
Query: 107 LRERQHCP 114
L CP
Sbjct: 137 LVSHSSCP 144
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 62 PSIAFPAD---EAPDAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHCP 114
P++ + +D +A+C ICL+ F+ GE ++ L C H FH +C+ WL R CP
Sbjct: 90 PTLVYSSDLELAGAEAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCP 146
>sp|O55176|PJA1_MOUSE E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus GN=Pja1 PE=1
SV=3
Length = 578
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 38 DALSLDSELSPPRAPFSTRRFGQIPSIAFPADEAPDAQ---CVICLAPFQPGEEVKELLC 94
++L++D E++ P P S +P I D Q C IC + + GE EL C
Sbjct: 491 ESLAVDVEVANP--PASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPC 548
Query: 95 HHKFHSECLEPWLRERQHCP 114
HH FH C+ WL++ CP
Sbjct: 549 HHYFHKPCVSIWLQKSGTCP 568
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
C +CL GE V+ L C H+FH+ C++PWLR++ CP
Sbjct: 211 CSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCP 249
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 18 GAMGETIIIDRFLNISRRYNDALSLDSELSPPRAPFSTRRFGQIPSIAFPADEAP-DAQC 76
GA G II + LN ++ + PP P T + +P+I + +C
Sbjct: 181 GANGLDTIITQLLN---QFENT-------GPP--PADTDKIQALPTIQITEEHVGFGLEC 228
Query: 77 VICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+C + GE V++L C+H FH++C+ PWL + CP
Sbjct: 229 PVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCP 266
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 27 DRFLNISRRYNDALSLDSELSPPRAPFSTRRFGQIPSIAFPADEAPDAQ--CVICLAPFQ 84
+ LN++ R DA PR + Q+PS F D Q CV+C + F+
Sbjct: 256 EALLNLAERLGDA--------KPRG-LTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFE 306
Query: 85 PGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+ ++ L C+H+FH++C++ WL+ + CP
Sbjct: 307 VRQLLRVLPCNHEFHAKCVDKWLKANRTCP 336
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 50 RAPFSTRRFGQIPSIAFPADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE 109
R + + QIP+ + + D C ICL ++ G++++ L C H +HS C++PWL +
Sbjct: 205 RNRLTKEQLKQIPTHDYQKGDQYDV-CAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQ 263
Query: 110 -RQHCP 114
R+ CP
Sbjct: 264 TRKTCP 269
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
D +C +CL F+ E V E+ CHH FHS C+ PWL + CP
Sbjct: 85 DLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCP 126
>sp|A5WWA0|ZNRF3_DANRE E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=3 SV=2
Length = 868
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
C ICL + GEE++ + C H+FH +C++PWL + CP
Sbjct: 267 CAICLEKYIDGEELRVIPCAHRFHKKCVDPWLLQHHTCP 305
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 27 DRFLNISRRYNDALSLDSELSPPRAPFSTRRFGQIPSIAFPADEAPDAQ--CVICLAPFQ 84
+ LN++ R DA PR + Q+PS F D Q CV+C + F+
Sbjct: 313 EALLNLAERLGDAK--------PRG-LTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFE 363
Query: 85 PGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+ ++ L C+H+FH++C++ WL+ + CP
Sbjct: 364 VRQLLRVLPCNHEFHAKCVDKWLKANRTCP 393
>sp|Q94BY6|ATL75_ARATH RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2
SV=1
Length = 226
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 75 QCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHCP 114
+CVICL+ F GE+++ L CHH FH C++ WL++ CP
Sbjct: 135 ECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCP 175
>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2
Length = 438
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
C +C+ ++P + V+ L C H FH C++PWL + + CP
Sbjct: 278 CAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCP 316
>sp|Q8NG27|PJA1_HUMAN E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens GN=PJA1 PE=1
SV=2
Length = 643
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 38 DALSLDSELSPPRAPFSTRRFGQIPSIAFPADEAPDAQ---CVICLAPFQPGEEVKELLC 94
++L++D E++ P P S +P I D Q C IC + + GE EL C
Sbjct: 556 ESLAVDVEVANP--PASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPC 613
Query: 95 HHKFHSECLEPWLRERQHCP 114
HH FH C+ WL++ CP
Sbjct: 614 HHYFHKPCVSIWLQKSGTCP 633
>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2
SV=1
Length = 784
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+ C ICL + GEE++ + C H+FH C++PWL + CP
Sbjct: 200 SDCAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCP 240
>sp|Q95K04|RN133_MACFA E3 ubiquitin-protein ligase RNF133 OS=Macaca fascicularis GN=RNF133
PE=2 SV=1
Length = 376
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
CVIC ++P + V+ L C H FH C++PW+ CP
Sbjct: 256 CVICFEHYKPNDIVRILTCKHFFHKNCIDPWILSHGTCP 294
>sp|Q2TA44|RN148_BOVIN RING finger protein 148 OS=Bos taurus GN=RNF148 PE=2 SV=1
Length = 303
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 16/82 (19%)
Query: 49 PRAP-FSTRRFGQIPSIAFPA--------------DEAPDA-QCVICLAPFQPGEEVKEL 92
PR P FSTRR Q+ + A + PD CV+C ++P + V+ L
Sbjct: 213 PRGPNFSTRRQRQLKADVRKAIGKLQLRVLQEGDKELEPDEDNCVVCFDIYKPQDVVRIL 272
Query: 93 LCHHKFHSECLEPWLRERQHCP 114
C H FH C++PWL + CP
Sbjct: 273 TCKHIFHKACIDPWLLAHRTCP 294
>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana
GN=At1g63170 PE=2 SV=2
Length = 381
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
DA+C ICL+ ++ E++EL C H FH C++ WL CP
Sbjct: 322 DAECCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCP 363
>sp|Q08D68|ZNRF3_XENTR E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3
PE=2 SV=1
Length = 853
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
C ICL + GEE++ + C H+FH C++PWL + CP
Sbjct: 266 CAICLEKYIDGEELRVIPCTHRFHKRCVDPWLLQNHTCP 304
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+ C ICL + GEE++ + C H+FH +C++PWL + CP
Sbjct: 288 SDCAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCP 328
>sp|Q9P7E1|YOF7_SCHPO Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP4H10.07 PE=1 SV=1
Length = 583
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 36 YNDALSLDSELSPPRAPFSTRRFGQIPSIAFPADEAPDAQCVICLAPFQPGEEVKELL-C 94
Y D L L+S + + P ++++ + FP D +C++CL+ F+ +E + L C
Sbjct: 486 YEDMLLLNSIIGIEKPPVASQKDLEKAGGVFPFS-GTDERCLVCLSNFELNDECRRLKQC 544
Query: 95 HHKFHSECLEPWLRERQH-CP 114
+H FH EC++ WL Q+ CP
Sbjct: 545 NHFFHRECIDQWLTSSQNSCP 565
>sp|Q8WVZ7|RN133_HUMAN E3 ubiquitin-protein ligase RNF133 OS=Homo sapiens GN=RNF133 PE=2
SV=1
Length = 376
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
CVIC ++P + V+ L C H FH C++PW+ CP
Sbjct: 256 CVICFERYKPNDIVRILTCKHFFHKNCIDPWILPHGTCP 294
>sp|Q9LY41|ATL4_ARATH E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4
PE=1 SV=1
Length = 334
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 60 QIPSIAFPADEAPDAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHCP 114
+ S+ + C +CL+ F+P ++++ L LC H FH++C++ WL Q CP
Sbjct: 101 KFSSVTRRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSNQTCP 156
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,969,541
Number of Sequences: 539616
Number of extensions: 1774851
Number of successful extensions: 4457
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 4099
Number of HSP's gapped (non-prelim): 430
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)