Query psy16979
Match_columns 114
No_of_seqs 189 out of 1388
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 18:36:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 2.6E-20 8.8E-25 111.6 6.9 67 48-114 12-81 (91)
2 1x4j_A Ring finger protein 38; 99.8 2.4E-19 8.2E-24 103.6 2.7 60 55-114 3-64 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.7 3.6E-17 1.2E-21 88.9 3.8 42 73-114 5-47 (55)
4 2kiz_A E3 ubiquitin-protein li 99.6 1.4E-16 4.8E-21 90.4 4.5 42 73-114 14-55 (69)
5 2ep4_A Ring finger protein 24; 99.6 1.5E-16 5.2E-21 91.4 4.2 42 73-114 15-56 (74)
6 2ecl_A Ring-box protein 2; RNF 99.6 3.5E-16 1.2E-20 91.6 4.7 42 73-114 15-68 (81)
7 2ect_A Ring finger protein 126 99.6 3.1E-16 1.1E-20 90.9 4.2 42 73-114 15-56 (78)
8 2ecm_A Ring finger and CHY zin 99.6 9E-16 3.1E-20 83.2 4.1 42 73-114 5-47 (55)
9 1v87_A Deltex protein 2; ring- 99.6 8.6E-16 3E-20 95.0 3.4 42 73-114 25-86 (114)
10 3dpl_R Ring-box protein 1; ubi 99.6 1.9E-15 6.4E-20 92.8 4.6 42 73-114 37-93 (106)
11 2ea6_A Ring finger protein 4; 99.5 1.1E-14 3.7E-19 82.2 3.8 42 73-114 15-60 (69)
12 3ng2_A RNF4, snurf, ring finge 99.5 4.8E-15 1.7E-19 84.2 2.1 42 73-114 10-55 (71)
13 2ysj_A Tripartite motif-contai 99.5 6.5E-14 2.2E-18 77.9 5.9 39 73-114 20-61 (63)
14 2d8s_A Cellular modulator of i 99.5 1.8E-14 6E-19 84.2 3.2 41 73-114 15-62 (80)
15 2xeu_A Ring finger protein 4; 99.5 9.5E-15 3.2E-19 81.3 1.7 42 73-114 3-48 (64)
16 4a0k_B E3 ubiquitin-protein li 99.5 5.1E-15 1.7E-19 92.2 0.1 42 73-114 48-104 (117)
17 2ecn_A Ring finger protein 141 99.5 2.7E-14 9.2E-19 81.0 2.7 38 73-114 15-52 (70)
18 1chc_A Equine herpes virus-1 r 99.4 3E-14 1E-18 80.4 2.7 40 73-114 5-44 (68)
19 2ct2_A Tripartite motif protei 99.4 1.8E-13 6.2E-18 80.6 5.1 42 73-114 15-60 (88)
20 2d8t_A Dactylidin, ring finger 99.4 5.8E-14 2E-18 80.0 2.8 39 73-114 15-53 (71)
21 2ecj_A Tripartite motif-contai 99.4 1.7E-13 5.7E-18 74.8 3.9 39 73-114 15-56 (58)
22 2djb_A Polycomb group ring fin 99.4 2.2E-13 7.4E-18 77.8 3.6 40 73-114 15-54 (72)
23 2ysl_A Tripartite motif-contai 99.4 6.6E-13 2.2E-17 75.7 4.7 39 73-114 20-61 (73)
24 4ayc_A E3 ubiquitin-protein li 99.4 2.6E-13 9E-18 86.5 3.2 39 73-114 53-91 (138)
25 2csy_A Zinc finger protein 183 99.4 5.4E-13 1.8E-17 77.7 3.8 39 73-114 15-53 (81)
26 4ap4_A E3 ubiquitin ligase RNF 99.3 2.9E-13 9.9E-18 85.0 2.7 42 73-114 7-52 (133)
27 2ecy_A TNF receptor-associated 99.3 7.6E-13 2.6E-17 74.2 3.4 39 73-114 15-54 (66)
28 2yur_A Retinoblastoma-binding 99.3 8.9E-13 3.1E-17 75.6 3.6 39 73-114 15-56 (74)
29 2ct0_A Non-SMC element 1 homol 99.3 6.6E-13 2.3E-17 76.3 2.8 40 73-114 15-56 (74)
30 1t1h_A Gspef-atpub14, armadill 99.3 2.1E-12 7E-17 74.6 4.1 39 73-114 8-47 (78)
31 2ecw_A Tripartite motif-contai 99.3 4.3E-12 1.5E-16 74.0 4.6 39 73-114 19-63 (85)
32 2y43_A E3 ubiquitin-protein li 99.3 2.3E-12 7.8E-17 77.7 3.5 40 73-114 22-61 (99)
33 3lrq_A E3 ubiquitin-protein li 99.3 1.6E-12 5.5E-17 78.7 2.6 40 73-114 22-62 (100)
34 4ap4_A E3 ubiquitin ligase RNF 99.3 1.7E-12 5.9E-17 81.5 2.5 42 73-114 72-117 (133)
35 2ecv_A Tripartite motif-contai 99.2 5.7E-12 1.9E-16 73.4 4.2 39 73-114 19-63 (85)
36 2ckl_A Polycomb group ring fin 99.2 4E-12 1.4E-16 77.8 3.6 40 73-114 15-54 (108)
37 2egp_A Tripartite motif-contai 99.2 1.2E-12 4E-17 75.6 0.9 39 73-114 12-57 (79)
38 3fl2_A E3 ubiquitin-protein li 99.2 6.5E-12 2.2E-16 78.6 3.5 39 73-114 52-91 (124)
39 1g25_A CDK-activating kinase a 99.2 7.6E-12 2.6E-16 69.8 3.4 42 73-114 3-47 (65)
40 3ztg_A E3 ubiquitin-protein li 99.2 1.1E-11 3.7E-16 73.6 3.9 39 73-114 13-54 (92)
41 2ckl_B Ubiquitin ligase protei 99.2 1.1E-11 3.6E-16 81.1 4.0 40 73-114 54-94 (165)
42 1jm7_A BRCA1, breast cancer ty 99.2 1.4E-11 4.7E-16 75.5 3.2 39 73-114 21-62 (112)
43 3hct_A TNF receptor-associated 99.1 1.7E-11 5.8E-16 76.1 2.8 39 73-114 18-57 (118)
44 1z6u_A NP95-like ring finger p 99.1 3.2E-11 1.1E-15 77.9 3.5 39 73-114 78-117 (150)
45 1rmd_A RAG1; V(D)J recombinati 99.1 3.1E-11 1.1E-15 74.6 2.8 39 73-114 23-62 (116)
46 3l11_A E3 ubiquitin-protein li 99.1 1.5E-11 5E-16 76.0 1.0 39 73-114 15-54 (115)
47 2kr4_A Ubiquitin conjugation f 99.1 4.7E-11 1.6E-15 70.2 2.8 39 73-114 14-52 (85)
48 3knv_A TNF receptor-associated 99.1 2E-11 6.9E-16 78.2 0.9 39 73-114 31-70 (141)
49 1e4u_A Transcriptional repress 99.0 1.8E-10 6.2E-15 66.7 3.9 42 73-114 11-54 (78)
50 2kre_A Ubiquitin conjugation f 99.0 1.4E-10 4.7E-15 70.2 2.9 39 73-114 29-67 (100)
51 1wgm_A Ubiquitin conjugation f 99.0 3.5E-10 1.2E-14 68.2 3.9 39 73-114 22-61 (98)
52 2y1n_A E3 ubiquitin-protein li 99.0 3E-10 1E-14 83.1 4.1 39 73-114 332-371 (389)
53 2yu4_A E3 SUMO-protein ligase 99.0 2.1E-10 7E-15 68.6 2.1 39 73-114 7-52 (94)
54 1jm7_B BARD1, BRCA1-associated 98.9 1.7E-10 6E-15 71.4 0.8 37 73-114 22-59 (117)
55 3k1l_B Fancl; UBC, ring, RWD, 98.9 3E-10 1E-14 81.8 1.4 37 73-109 308-349 (381)
56 1wim_A KIAA0161 protein; ring 98.9 6.9E-10 2.4E-14 66.2 2.6 37 73-109 5-41 (94)
57 2vje_A E3 ubiquitin-protein li 98.9 9.4E-10 3.2E-14 61.3 2.7 39 73-114 8-49 (64)
58 1bor_A Transcription factor PM 98.9 5E-10 1.7E-14 60.8 1.1 36 73-114 6-41 (56)
59 3hcs_A TNF receptor-associated 98.8 1.2E-09 4.1E-14 71.6 2.8 39 73-114 18-57 (170)
60 1vyx_A ORF K3, K3RING; zinc-bi 98.8 1.8E-09 6.3E-14 59.4 2.8 39 73-114 6-51 (60)
61 2c2l_A CHIP, carboxy terminus 98.8 2.9E-09 1E-13 74.0 3.2 39 73-114 208-247 (281)
62 2vje_B MDM4 protein; proto-onc 98.8 3.2E-09 1.1E-13 58.9 2.4 41 73-114 7-48 (63)
63 4ic3_A E3 ubiquitin-protein li 98.8 1.7E-09 5.9E-14 61.8 1.2 35 73-114 24-59 (74)
64 2f42_A STIP1 homology and U-bo 98.6 1.1E-08 3.9E-13 67.7 2.8 39 73-114 106-145 (179)
65 2bay_A PRE-mRNA splicing facto 98.6 9.9E-09 3.4E-13 56.6 1.6 38 74-114 4-42 (61)
66 3htk_C E3 SUMO-protein ligase 98.5 5E-08 1.7E-12 68.0 3.0 40 73-114 181-222 (267)
67 2ecg_A Baculoviral IAP repeat- 98.5 4.8E-08 1.6E-12 55.8 1.9 35 73-114 25-60 (75)
68 2ea5_A Cell growth regulator w 98.4 2.2E-07 7.4E-12 52.2 3.4 35 73-114 15-50 (68)
69 2yho_A E3 ubiquitin-protein li 98.3 9.7E-08 3.3E-12 55.2 1.0 35 73-114 18-53 (79)
70 3t6p_A Baculoviral IAP repeat- 98.2 2.3E-07 7.8E-12 67.2 0.9 35 73-114 295-330 (345)
71 3nw0_A Non-structural maintena 98.1 9.2E-07 3.2E-11 61.0 2.3 39 73-114 180-221 (238)
72 3vk6_A E3 ubiquitin-protein li 98.0 5.1E-06 1.8E-10 49.7 3.6 38 75-114 3-41 (101)
73 2jun_A Midline-1; B-BOX, TRIM, 96.9 0.00048 1.7E-08 40.8 2.4 34 73-106 3-36 (101)
74 2lri_C Autoimmune regulator; Z 94.3 0.024 8.2E-07 31.2 2.1 34 73-109 12-45 (66)
75 1wil_A KIAA1045 protein; ring 93.8 0.039 1.3E-06 31.8 2.3 30 73-106 15-47 (89)
76 1we9_A PHD finger family prote 92.9 0.085 2.9E-06 28.5 2.7 33 73-105 6-39 (64)
77 2vpb_A Hpygo1, pygopus homolog 92.3 0.15 5.2E-06 27.8 3.2 32 73-104 8-41 (65)
78 3m62_A Ubiquitin conjugation f 92.1 0.11 3.7E-06 42.2 3.4 39 73-114 891-930 (968)
79 2k16_A Transcription initiatio 92.0 0.13 4.6E-06 28.6 2.9 34 73-107 18-52 (75)
80 2yt5_A Metal-response element- 91.5 0.098 3.4E-06 28.3 1.9 33 73-105 6-40 (66)
81 1f62_A Transcription factor WS 91.3 0.18 6.1E-06 25.8 2.7 31 75-105 2-32 (51)
82 2xb1_A Pygopus homolog 2, B-ce 90.7 0.15 5E-06 30.5 2.3 32 73-104 3-36 (105)
83 3lqh_A Histone-lysine N-methyl 90.7 0.15 5.1E-06 33.5 2.4 31 74-104 3-37 (183)
84 2ysm_A Myeloid/lymphoid or mix 89.7 0.24 8.2E-06 29.6 2.6 36 73-108 7-42 (111)
85 2yql_A PHD finger protein 21A; 89.4 0.17 5.9E-06 26.5 1.6 33 73-108 9-41 (56)
86 2ku3_A Bromodomain-containing 88.9 0.73 2.5E-05 25.5 4.0 33 73-105 16-50 (71)
87 1xwh_A Autoimmune regulator; P 88.8 0.27 9.3E-06 26.7 2.2 32 73-107 8-39 (66)
88 2l5u_A Chromodomain-helicase-D 88.7 0.51 1.7E-05 25.2 3.2 33 73-108 11-43 (61)
89 2puy_A PHD finger protein 21A; 88.5 0.29 9.9E-06 26.0 2.1 32 73-107 5-36 (60)
90 1mm2_A MI2-beta; PHD, zinc fin 87.2 0.24 8.1E-06 26.5 1.3 32 73-107 9-40 (61)
91 2l43_A N-teminal domain from h 86.2 0.82 2.8E-05 26.3 3.3 33 73-105 25-59 (88)
92 3v43_A Histone acetyltransfera 86.2 0.65 2.2E-05 27.8 3.0 32 73-104 5-42 (112)
93 3ql9_A Transcriptional regulat 85.7 1 3.4E-05 28.0 3.7 30 73-106 57-87 (129)
94 2o35_A Hypothetical protein DU 84.8 0.39 1.3E-05 28.4 1.4 12 97-108 42-53 (105)
95 3fyb_A Protein of unknown func 84.7 0.39 1.3E-05 28.4 1.4 12 97-108 41-52 (104)
96 2lbm_A Transcriptional regulat 84.3 1.3 4.4E-05 27.9 3.8 31 73-107 63-94 (142)
97 1fp0_A KAP-1 corepressor; PHD 84.3 0.31 1.1E-05 28.2 0.9 33 73-108 25-57 (88)
98 1wev_A Riken cDNA 1110020M19; 84.0 0.56 1.9E-05 27.0 1.9 35 73-107 16-52 (88)
99 3o36_A Transcription intermedi 84.0 0.24 8.1E-06 32.3 0.3 33 73-109 4-37 (184)
100 2yw8_A RUN and FYVE domain-con 83.5 1 3.5E-05 25.4 2.8 33 73-105 19-52 (82)
101 3u5n_A E3 ubiquitin-protein li 83.2 0.26 8.9E-06 32.8 0.3 33 73-109 7-40 (207)
102 1wem_A Death associated transc 83.1 0.89 3E-05 25.2 2.4 31 73-104 16-46 (76)
103 1zbd_B Rabphilin-3A; G protein 83.1 0.79 2.7E-05 28.5 2.4 31 73-103 55-87 (134)
104 2kwj_A Zinc finger protein DPF 82.9 0.63 2.2E-05 28.0 1.9 33 74-106 2-41 (114)
105 2kgg_A Histone demethylase jar 82.9 0.71 2.4E-05 23.7 1.9 30 75-104 4-35 (52)
106 1zfo_A LAsp-1; LIM domain, zin 82.6 0.4 1.4E-05 22.0 0.7 28 73-102 3-30 (31)
107 1wep_A PHF8; structural genomi 82.2 1.3 4.5E-05 24.7 3.0 31 73-104 12-43 (79)
108 2ko5_A Ring finger protein Z; 80.0 0.54 1.9E-05 27.6 0.8 37 73-114 28-65 (99)
109 2cs3_A Protein C14ORF4, MY039 79.7 2.6 8.8E-05 24.0 3.5 36 73-109 15-52 (93)
110 1joc_A EEA1, early endosomal a 79.4 1.4 4.8E-05 27.0 2.6 33 73-105 69-102 (125)
111 1wfk_A Zinc finger, FYVE domai 78.9 2.3 7.9E-05 24.3 3.3 32 73-104 9-41 (88)
112 3t7l_A Zinc finger FYVE domain 78.8 1.6 5.6E-05 25.1 2.6 33 73-105 20-53 (90)
113 1z2q_A LM5-1; membrane protein 78.7 2.4 8.1E-05 24.0 3.3 33 73-105 21-54 (84)
114 2ri7_A Nucleosome-remodeling f 78.7 1.3 4.3E-05 28.4 2.4 31 73-104 8-39 (174)
115 2e6r_A Jumonji/ARID domain-con 78.3 0.43 1.5E-05 27.7 0.0 32 73-105 16-48 (92)
116 1vfy_A Phosphatidylinositol-3- 78.3 1.8 6E-05 23.8 2.6 32 73-104 11-43 (73)
117 1wew_A DNA-binding family prot 78.0 1.7 5.8E-05 24.2 2.5 31 73-104 16-48 (78)
118 3o70_A PHD finger protein 13; 76.8 1.7 5.9E-05 23.6 2.2 31 73-104 19-49 (68)
119 2lv9_A Histone-lysine N-methyl 76.0 0.97 3.3E-05 26.5 1.1 31 74-105 29-59 (98)
120 2ro1_A Transcription intermedi 75.6 0.54 1.8E-05 30.9 -0.1 33 73-108 2-34 (189)
121 3v43_A Histone acetyltransfera 75.1 1.7 5.7E-05 26.0 2.0 34 75-108 63-97 (112)
122 1dvp_A HRS, hepatocyte growth 74.8 1.7 5.7E-05 29.0 2.2 32 73-104 161-193 (220)
123 2e6s_A E3 ubiquitin-protein li 74.5 1.2 4E-05 25.0 1.2 32 73-105 26-58 (77)
124 1wee_A PHD finger family prote 74.3 1.3 4.3E-05 24.3 1.3 32 73-105 16-48 (72)
125 3zyq_A Hepatocyte growth facto 74.2 1.7 5.9E-05 29.2 2.1 33 73-105 164-197 (226)
126 1x4u_A Zinc finger, FYVE domai 73.6 3.4 0.00012 23.3 3.0 33 73-105 14-47 (84)
127 2kwj_A Zinc finger protein DPF 72.1 1.5 5E-05 26.3 1.3 31 75-105 60-90 (114)
128 2ysm_A Myeloid/lymphoid or mix 72.1 1.9 6.6E-05 25.5 1.8 31 75-106 56-87 (111)
129 2d8v_A Zinc finger FYVE domain 71.6 3.5 0.00012 22.5 2.5 30 73-106 8-38 (67)
130 3asl_A E3 ubiquitin-protein li 71.5 1.2 4.2E-05 24.4 0.7 30 75-105 20-50 (70)
131 4gne_A Histone-lysine N-methyl 71.3 2.4 8.4E-05 25.3 2.1 28 73-104 15-45 (107)
132 1iml_A CRIP, cysteine rich int 70.3 1.2 4.1E-05 24.3 0.5 14 73-86 27-40 (76)
133 3mjh_B Early endosome antigen 69.8 1.1 3.9E-05 21.1 0.3 14 73-86 5-18 (34)
134 1y02_A CARP2, FYVE-ring finger 68.5 3 0.0001 25.4 2.1 34 73-106 19-53 (120)
135 2zet_C Melanophilin; complex, 67.3 3.3 0.00011 26.3 2.2 31 73-103 68-100 (153)
136 3a1b_A DNA (cytosine-5)-methyl 66.6 7.6 0.00026 24.9 3.8 33 73-109 79-114 (159)
137 2cu8_A Cysteine-rich protein 2 66.5 2.7 9.3E-05 22.7 1.5 27 74-102 10-36 (76)
138 2dj7_A Actin-binding LIM prote 65.2 3.3 0.00011 22.9 1.7 29 73-103 15-43 (80)
139 2co8_A NEDD9 interacting prote 64.3 4.7 0.00016 22.3 2.3 29 73-103 15-43 (82)
140 3ask_A E3 ubiquitin-protein li 63.4 2.3 7.8E-05 28.9 0.9 35 73-107 174-208 (226)
141 2ct7_A Ring finger protein 31; 61.4 1.2 4.2E-05 25.3 -0.6 18 89-106 43-61 (86)
142 3shb_A E3 ubiquitin-protein li 61.4 2 6.8E-05 24.1 0.3 33 75-108 28-61 (77)
143 1x63_A Skeletal muscle LIM-pro 58.6 7 0.00024 21.3 2.3 28 74-102 16-43 (82)
144 3o7a_A PHD finger protein 13 v 57.5 4.3 0.00015 20.6 1.2 28 77-104 7-34 (52)
145 1weu_A Inhibitor of growth fam 56.8 8.3 0.00028 22.2 2.4 30 73-104 36-68 (91)
146 1wyh_A SLIM 2, skeletal muscle 56.6 6.7 0.00023 20.7 1.9 11 74-84 34-44 (72)
147 3kqi_A GRC5, PHD finger protei 55.8 13 0.00045 20.2 3.1 32 73-104 9-41 (75)
148 2jmo_A Parkin; IBR, E3 ligase, 55.4 0.74 2.5E-05 25.9 -2.2 16 93-108 55-70 (80)
149 2rsd_A E3 SUMO-protein ligase 55.2 3.7 0.00013 22.1 0.7 28 75-103 12-41 (68)
150 3mpx_A FYVE, rhogef and PH dom 55.0 2.5 8.7E-05 30.6 0.0 35 73-107 375-410 (434)
151 2kpi_A Uncharacterized protein 54.7 5 0.00017 21.0 1.2 26 73-98 10-38 (56)
152 2a20_A Regulating synaptic mem 53.7 15 0.00051 19.5 2.9 33 73-105 9-42 (62)
153 1x4k_A Skeletal muscle LIM-pro 53.5 7.9 0.00027 20.4 1.9 11 75-85 7-17 (72)
154 2lq6_A Bromodomain-containing 53.2 5.8 0.0002 22.6 1.3 32 73-105 17-50 (87)
155 1x61_A Thyroid receptor intera 52.4 9.5 0.00032 20.1 2.1 38 73-112 33-70 (72)
156 3f6q_B LIM and senescent cell 51.8 7.2 0.00025 20.4 1.6 30 73-103 11-40 (72)
157 1g47_A Pinch protein; LIM doma 50.8 8.8 0.0003 20.5 1.8 29 73-102 11-39 (77)
158 1wen_A Inhibitor of growth fam 50.4 9.8 0.00034 20.7 2.0 30 73-104 16-48 (71)
159 1a7i_A QCRP2 (LIM1); LIM domai 50.3 6.6 0.00022 21.4 1.3 27 74-102 8-34 (81)
160 2pv0_B DNA (cytosine-5)-methyl 50.2 12 0.00043 27.3 3.0 34 73-109 93-128 (386)
161 2cup_A Skeletal muscle LIM-pro 50.1 11 0.00037 21.4 2.2 30 73-103 66-95 (101)
162 2das_A Zinc finger MYM-type pr 49.9 20 0.00068 19.1 3.0 34 73-106 20-55 (62)
163 3kv5_D JMJC domain-containing 49.6 12 0.00043 28.0 3.0 31 74-104 37-68 (488)
164 1loi_A Cyclic 3',5'-AMP specif 47.8 0.84 2.9E-05 19.5 -2.1 12 97-108 6-17 (26)
165 1r79_A Diacylglycerol kinase, 47.0 37 0.0013 19.1 4.1 34 73-106 38-74 (84)
166 2l3k_A Rhombotin-2, linker, LI 46.8 8.6 0.00029 22.9 1.5 35 73-108 36-70 (123)
167 1x4l_A Skeletal muscle LIM-pro 46.5 14 0.00047 19.5 2.2 10 75-84 7-16 (72)
168 3c5k_A HD6, histone deacetylas 46.2 20 0.00068 21.2 3.0 24 73-99 24-47 (109)
169 1x68_A FHL5 protein; four-and- 46.0 12 0.00042 20.0 2.0 28 74-102 6-35 (76)
170 2d8y_A Eplin protein; LIM doma 45.7 12 0.00043 20.8 2.0 27 74-102 16-42 (91)
171 2akl_A PHNA-like protein PA012 43.7 8.1 0.00028 24.0 1.0 27 73-99 27-55 (138)
172 3c6w_A P28ING5, inhibitor of g 43.3 6.7 0.00023 20.6 0.5 29 74-104 10-41 (59)
173 2dar_A PDZ and LIM domain prot 42.9 15 0.00051 20.4 2.1 28 73-103 25-52 (90)
174 2vnf_A ING 4, P29ING4, inhibit 42.1 7.2 0.00024 20.5 0.5 29 74-104 11-42 (60)
175 1m3v_A FLIN4, fusion of the LI 41.8 19 0.00065 21.3 2.5 28 74-103 6-33 (122)
176 2d8x_A Protein pinch; LIM doma 41.1 14 0.00047 19.4 1.6 32 74-107 32-63 (70)
177 1nyp_A Pinch protein; LIM doma 40.8 7 0.00024 20.3 0.4 10 75-84 7-16 (66)
178 1z60_A TFIIH basal transcripti 39.6 12 0.00041 19.8 1.2 29 74-103 16-45 (59)
179 1x64_A Alpha-actinin-2 associa 38.7 30 0.001 19.1 2.9 28 73-103 25-52 (89)
180 2pk7_A Uncharacterized protein 38.7 18 0.00061 19.7 1.8 25 74-98 9-36 (69)
181 1v6g_A Actin binding LIM prote 37.9 16 0.00053 19.8 1.5 10 75-84 17-26 (81)
182 1wd2_A Ariadne-1 protein homol 37.6 3.2 0.00011 22.0 -1.4 36 74-109 7-47 (60)
183 2cur_A Skeletal muscle LIM-pro 35.5 18 0.00063 18.8 1.6 33 73-107 31-63 (69)
184 2d8z_A Four and A half LIM dom 35.4 25 0.00087 18.2 2.1 31 74-106 32-62 (70)
185 2g6q_A Inhibitor of growth pro 34.9 11 0.00038 19.9 0.6 29 74-104 12-43 (62)
186 2cor_A Pinch protein; LIM doma 34.8 15 0.00052 19.9 1.2 11 74-84 42-52 (79)
187 2ehe_A Four and A half LIM dom 34.3 21 0.00071 19.3 1.7 10 75-84 17-26 (82)
188 1x62_A C-terminal LIM domain p 33.9 21 0.00073 19.2 1.7 28 73-103 15-42 (79)
189 2egq_A FHL1 protein; LIM domai 33.6 27 0.00092 18.5 2.1 29 73-102 15-46 (77)
190 2l4z_A DNA endonuclease RBBP8, 33.2 19 0.00066 21.5 1.5 29 73-103 61-89 (123)
191 2vrw_B P95VAV, VAV1, proto-onc 31.9 35 0.0012 24.3 3.0 33 73-105 357-391 (406)
192 4bbq_A Lysine-specific demethy 31.0 12 0.00042 22.0 0.4 31 75-105 61-92 (117)
193 2xqn_T Testin, TESS; metal-bin 31.0 29 0.001 20.4 2.1 11 74-84 31-41 (126)
194 2uzg_A Ubiquitin carboxyl-term 30.6 41 0.0014 19.3 2.6 25 73-99 25-51 (97)
195 2jmi_A Protein YNG1, ING1 homo 29.6 20 0.00069 20.5 1.1 30 73-104 26-58 (90)
196 1x4i_A Inhibitor of growth pro 29.0 57 0.0019 17.5 2.9 29 74-104 7-38 (70)
197 2jny_A Uncharacterized BCR; st 28.9 19 0.00065 19.5 0.8 26 73-98 10-38 (67)
198 2cuq_A Four and A half LIM dom 27.9 34 0.0012 18.2 1.9 30 74-105 42-71 (80)
199 1b8t_A Protein (CRP1); LIM dom 26.6 18 0.00061 23.2 0.6 28 73-102 115-142 (192)
200 2jr6_A UPF0434 protein NMA0874 26.5 22 0.00076 19.2 0.9 26 73-98 8-36 (68)
201 2dlo_A Thyroid receptor-intera 26.4 32 0.0011 18.5 1.5 11 74-84 42-52 (81)
202 1wig_A KIAA1808 protein; LIM d 26.2 35 0.0012 18.0 1.7 34 73-107 31-64 (73)
203 2hf1_A Tetraacyldisaccharide-1 25.8 23 0.00079 19.1 0.8 25 74-98 9-36 (68)
204 3kv4_A PHD finger protein 8; e 25.6 41 0.0014 25.0 2.4 31 74-104 5-36 (447)
205 2csz_A Synaptotagmin-like prot 25.5 28 0.00094 19.4 1.1 30 73-102 25-56 (76)
206 2roo_A Neurotoxin MAGI-4; spid 24.8 1.5 5.3E-05 21.4 -3.6 13 101-113 19-31 (43)
207 1v5n_A PDI-like hypothetical p 24.7 68 0.0023 18.0 2.8 31 73-104 47-77 (89)
208 2jvx_A NF-kappa-B essential mo 23.8 23 0.00077 15.8 0.5 12 73-84 3-14 (28)
209 2iyb_E Testin, TESS, TES; LIM 23.6 29 0.00099 17.8 1.0 11 75-85 4-14 (65)
210 1x3h_A Leupaxin; paxillin fami 23.5 38 0.0013 18.0 1.5 12 74-85 42-53 (80)
211 1qdp_A Robustoxin; neurotoxin, 22.4 1.6 5.6E-05 21.2 -3.7 13 101-113 19-31 (42)
212 4b6d_A RAC GTPase-activating p 21.9 58 0.002 17.0 2.0 32 73-104 19-51 (61)
213 1j2o_A FLIN2, fusion of rhombo 21.0 35 0.0012 19.8 1.1 35 73-108 30-65 (114)
214 1rut_X Flinc4, fusion protein 20.5 45 0.0015 21.2 1.6 27 74-102 6-32 (188)
215 2odx_A Cytochrome C oxidase po 20.3 56 0.0019 18.2 1.7 15 84-99 52-67 (80)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.82 E-value=2.6e-20 Score=111.60 Aligned_cols=67 Identities=31% Similarity=0.749 Sum_probs=60.0
Q ss_pred CCCCCCCHHHhcCCCceeeCCCCCC---CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 48 PPRAPFSTRRFGQIPSIAFPADEAP---DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 48 ~~~~~~~~~~i~~l~~~~~~~~~~~---~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
...++++++.+++||...+...... +..|+||+++|..++.++.|||+|.||..||..||+.+.+||
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP 81 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCP 81 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCT
T ss_pred cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCc
Confidence 3578999999999999988765432 678999999999999999999999999999999999999998
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-19 Score=103.59 Aligned_cols=60 Identities=32% Similarity=0.898 Sum_probs=51.4
Q ss_pred HHHhcCCCceeeCCCCC--CCCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 55 TRRFGQIPSIAFPADEA--PDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 55 ~~~i~~l~~~~~~~~~~--~~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
...+++||...+..... ++..|+||+++|..++.++.|||+|.||..||.+||+.+.+||
T Consensus 3 ~~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP 64 (75)
T 1x4j_A 3 SGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCP 64 (75)
T ss_dssp CCCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCT
T ss_pred HhhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCc
Confidence 34567888888765432 2678999999999999999999999999999999999999998
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.67 E-value=3.6e-17 Score=88.92 Aligned_cols=42 Identities=43% Similarity=1.068 Sum_probs=39.7
Q ss_pred CCcccccCCcCCCCCceEEeC-CCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lp-C~H~FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++.|..++.+..+| |+|.||..||.+|++.+.+||
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP 47 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCP 47 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCS
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCc
Confidence 678999999999999889998 999999999999999999998
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-16 Score=90.38 Aligned_cols=42 Identities=40% Similarity=1.081 Sum_probs=39.6
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++.|..++.++.+||+|.||..||.+|++.+.+||
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP 55 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCP 55 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCT
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCc
Confidence 678999999999888899999999999999999999988998
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=91.37 Aligned_cols=42 Identities=40% Similarity=1.013 Sum_probs=39.8
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++.|..+..++.|||+|.||..||.+|++.+.+||
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP 56 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCP 56 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCT
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCC
Confidence 678999999999998999999999999999999999988998
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.5e-16 Score=91.62 Aligned_cols=42 Identities=29% Similarity=0.764 Sum_probs=35.2
Q ss_pred CCcccccCCcCCC-----------CCceEEeC-CCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQP-----------GEEVKELL-CHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~-----------~~~~~~lp-C~H~FH~~Ci~~Wl~~~~~CP 114 (114)
++.|+||+++|.. ++.++.++ |+|.||..||.+||+.+++||
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP 68 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCP 68 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCT
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCC
Confidence 5678888888854 44566665 999999999999999999998
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=3.1e-16 Score=90.91 Aligned_cols=42 Identities=38% Similarity=1.075 Sum_probs=39.8
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++.|..+..++.|||+|.||..||.+|++.+.+||
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP 56 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCP 56 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCT
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCc
Confidence 678999999999988889999999999999999999999998
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.59 E-value=9e-16 Score=83.24 Aligned_cols=42 Identities=33% Similarity=0.741 Sum_probs=37.5
Q ss_pred CCcccccCCcCCCCC-ceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGE-EVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~-~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++.|..++ .++.+||+|.||..||.+|++.+.+||
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP 47 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCP 47 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCT
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCC
Confidence 678999999997654 578889999999999999999989998
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.58 E-value=8.6e-16 Score=94.98 Aligned_cols=42 Identities=26% Similarity=0.653 Sum_probs=35.0
Q ss_pred CCcccccCCcCCCCC---------------ceEEeCCCCcccHHhHHHHH-----hCCCCCC
Q psy16979 73 DAQCVICLAPFQPGE---------------EVKELLCHHKFHSECLEPWL-----RERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~---------------~~~~lpC~H~FH~~Ci~~Wl-----~~~~~CP 114 (114)
++.|+||++.|..+. .++.++|+|.||..||..|| +.+.+||
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP 86 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCT
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCC
Confidence 578999999997643 34577899999999999999 4567898
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.57 E-value=1.9e-15 Score=92.76 Aligned_cols=42 Identities=36% Similarity=0.767 Sum_probs=37.2
Q ss_pred CCcccccCCcCCCC---------------CceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPG---------------EEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~---------------~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
++.|+||++.|... ..++.++|+|.||..||.+||+.+.+||
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP 93 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 93 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCS
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCc
Confidence 67899999999854 1367789999999999999999999998
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=82.20 Aligned_cols=42 Identities=29% Similarity=0.668 Sum_probs=37.0
Q ss_pred CCcccccCCcCCCC----CceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPG----EEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~----~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
...|+||++.|... ..+..++|+|.||..||..|++.+.+||
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP 60 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 60 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCT
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCC
Confidence 67899999998753 4558889999999999999999988998
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.50 E-value=4.8e-15 Score=84.22 Aligned_cols=42 Identities=31% Similarity=0.756 Sum_probs=37.3
Q ss_pred CCcccccCCcCCC----CCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQP----GEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~----~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++.|.. +..++.++|+|.||..||.+|++.+.+||
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP 55 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 55 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCT
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCC
Confidence 6789999999875 35668889999999999999999999998
No 13
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=6.5e-14 Score=77.91 Aligned_cols=39 Identities=28% Similarity=0.596 Sum_probs=33.8
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHh---CCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR---ERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~---~~~~CP 114 (114)
+..|+||++.|.+. +.+||+|.||..||.+|++ .+..||
T Consensus 20 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP 61 (63)
T 2ysj_A 20 EVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCP 61 (63)
T ss_dssp CCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCS
T ss_pred CCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCc
Confidence 67899999998753 6679999999999999998 456798
No 14
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.8e-14 Score=84.22 Aligned_cols=41 Identities=27% Similarity=0.696 Sum_probs=35.7
Q ss_pred CCcccccCCcCCCCCceEEeCCC-----CcccHHhHHHHHhCC--CCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCH-----HKFHSECLEPWLRER--QHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~-----H~FH~~Ci~~Wl~~~--~~CP 114 (114)
+..|.||+++|..++.+ ++||+ |.||..||++||+.+ .+||
T Consensus 15 ~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~Cp 62 (80)
T 2d8s_A 15 QDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCE 62 (80)
T ss_dssp SCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCS
T ss_pred CCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCC
Confidence 67899999999887765 58997 999999999999875 4787
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.47 E-value=9.5e-15 Score=81.28 Aligned_cols=42 Identities=29% Similarity=0.645 Sum_probs=36.9
Q ss_pred CCcccccCCcCCCC----CceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPG----EEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~----~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++.+... ..+..++|+|.||..||.+|++.+.+||
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP 48 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 48 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCC
Confidence 56899999998753 4568889999999999999999988998
No 16
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.46 E-value=5.1e-15 Score=92.18 Aligned_cols=42 Identities=38% Similarity=0.820 Sum_probs=0.7
Q ss_pred CCcccccCCcCCCC-------------C--ceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPG-------------E--EVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~-------------~--~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
++.|+||+++|... + .+..++|+|.||..||.+||+.+++||
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP 104 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 104 (117)
T ss_dssp C--------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCC
Confidence 67999999999752 2 334458999999999999999999998
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.7e-14 Score=81.02 Aligned_cols=38 Identities=29% Similarity=0.877 Sum_probs=35.0
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
...|+||++.+.. +.+||+|.||..||.+|++.+.+||
T Consensus 15 ~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP 52 (70)
T 2ecn_A 15 EEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCP 52 (70)
T ss_dssp CCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCH
T ss_pred CCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCC
Confidence 6789999999875 7789999999999999999988998
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.45 E-value=3e-14 Score=80.37 Aligned_cols=40 Identities=33% Similarity=0.787 Sum_probs=35.7
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++.+.. .++.+||+|.||..||.+|++.+.+||
T Consensus 5 ~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP 44 (68)
T 1chc_A 5 AERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCP 44 (68)
T ss_dssp CCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTT
T ss_pred CCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCc
Confidence 5689999999863 458889999999999999999989998
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.8e-13 Score=80.61 Aligned_cols=42 Identities=33% Similarity=0.699 Sum_probs=37.1
Q ss_pred CCcccccCCcCCCCCc-eEEeCCCCcccHHhHHHHHhCC---CCCC
Q psy16979 73 DAQCVICLAPFQPGEE-VKELLCHHKFHSECLEPWLRER---QHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~-~~~lpC~H~FH~~Ci~~Wl~~~---~~CP 114 (114)
...|+||++.|..++. .+.++|+|.||..||..|++.+ ..||
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP 60 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCP 60 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCT
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCC
Confidence 6789999999988764 6788999999999999999875 6788
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=5.8e-14 Score=79.96 Aligned_cols=39 Identities=26% Similarity=0.498 Sum_probs=34.9
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++.+.. .+.+||+|.||..||..|++.+.+||
T Consensus 15 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP 53 (71)
T 2d8t_A 15 VPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCA 53 (71)
T ss_dssp CCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCS
T ss_pred CCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCc
Confidence 6789999999864 37789999999999999999988898
No 21
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.7e-13 Score=74.82 Aligned_cols=39 Identities=28% Similarity=0.801 Sum_probs=33.3
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHh---CCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR---ERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~---~~~~CP 114 (114)
...|+||++.+... +.++|+|.||..||.+|++ .+.+||
T Consensus 15 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP 56 (58)
T 2ecj_A 15 EASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCP 56 (58)
T ss_dssp CCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCS
T ss_pred CCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCC
Confidence 67899999999765 5589999999999999954 566798
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.2e-13 Score=77.75 Aligned_cols=40 Identities=23% Similarity=0.492 Sum_probs=34.5
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
...|+||++.+.+ .+..++|+|.||..||..|++.+.+||
T Consensus 15 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP 54 (72)
T 2djb_A 15 YILCSICKGYLID--ATTITECLHTFCKSCIVRHFYYSNRCP 54 (72)
T ss_dssp GGSCTTTSSCCSS--CEECSSSCCEECHHHHHHHHHHCSSCT
T ss_pred CCCCCCCChHHHC--cCEECCCCCHHHHHHHHHHHHcCCcCC
Confidence 6789999999875 344449999999999999999888898
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=6.6e-13 Score=75.69 Aligned_cols=39 Identities=28% Similarity=0.595 Sum_probs=33.2
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHh---CCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR---ERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~---~~~~CP 114 (114)
...|+||++.+.. .+.++|+|.||..||..|++ .+..||
T Consensus 20 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP 61 (73)
T 2ysl_A 20 EVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCP 61 (73)
T ss_dssp CCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCS
T ss_pred CCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCC
Confidence 6789999999874 36679999999999999997 355788
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.36 E-value=2.6e-13 Score=86.55 Aligned_cols=39 Identities=36% Similarity=0.940 Sum_probs=34.9
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++.|.. .+.+||||.||..||..|++.+.+||
T Consensus 53 ~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP 91 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECP 91 (138)
T ss_dssp HSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCT
T ss_pred cCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCC
Confidence 4579999999864 36789999999999999999999998
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.4e-13 Score=77.68 Aligned_cols=39 Identities=28% Similarity=0.574 Sum_probs=34.5
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
...|+||++.|.. .+++||+|.||..||..|++...+||
T Consensus 15 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP 53 (81)
T 2csy_A 15 PFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCY 53 (81)
T ss_dssp CSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCS
T ss_pred CCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCC
Confidence 5689999999864 35689999999999999999888898
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.35 E-value=2.9e-13 Score=85.04 Aligned_cols=42 Identities=29% Similarity=0.668 Sum_probs=37.4
Q ss_pred CCcccccCCcCCCC----CceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPG----EEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~----~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++.|.+. ..++.++|||.||..||.+||+.+.+||
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP 52 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 52 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCC
Confidence 67899999998753 5568899999999999999999999998
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=7.6e-13 Score=74.21 Aligned_cols=39 Identities=23% Similarity=0.579 Sum_probs=33.1
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHh-CCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR-ERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~-~~~~CP 114 (114)
...|+||++.+... ..++|+|.||..||.+|++ .+.+||
T Consensus 15 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP 54 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCT 54 (66)
T ss_dssp CEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCT
T ss_pred CCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCC
Confidence 67899999998755 3479999999999999995 466798
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.32 E-value=8.9e-13 Score=75.61 Aligned_cols=39 Identities=26% Similarity=0.664 Sum_probs=33.9
Q ss_pred CCcccccCCcCCCCCceEEeC-CCCcccHHhHHHHHhCC--CCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRER--QHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lp-C~H~FH~~Ci~~Wl~~~--~~CP 114 (114)
+..|+||++.|... +.+| |+|.||..||..|++.+ .+||
T Consensus 15 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP 56 (74)
T 2yur_A 15 ELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCP 56 (74)
T ss_dssp GGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCS
T ss_pred CCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCC
Confidence 67899999999754 6689 99999999999999865 5788
No 29
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=6.6e-13 Score=76.29 Aligned_cols=40 Identities=23% Similarity=0.673 Sum_probs=34.6
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCC--CCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER--QHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~--~~CP 114 (114)
.+.|+||++.+..++... .|+|.||..||.+||+.+ .+||
T Consensus 15 i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP 56 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCP 56 (74)
T ss_dssp SCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCT
T ss_pred CCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCC
Confidence 578999999998774332 799999999999999987 7898
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.30 E-value=2.1e-12 Score=74.59 Aligned_cols=39 Identities=18% Similarity=0.477 Sum_probs=34.3
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhC-CCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-RQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~-~~~CP 114 (114)
+..|+||++.|.+. +.++|||.||+.||..|++. +.+||
T Consensus 8 ~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP 47 (78)
T 1t1h_A 8 YFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCP 47 (78)
T ss_dssp SSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCT
T ss_pred cCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCC
Confidence 67899999998753 66799999999999999987 77898
No 31
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.27 E-value=4.3e-12 Score=73.98 Aligned_cols=39 Identities=26% Similarity=0.681 Sum_probs=34.0
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhC------CCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE------RQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~------~~~CP 114 (114)
+..|+||++.|... ..+||+|.||..||..|++. ...||
T Consensus 19 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP 63 (85)
T 2ecw_A 19 EVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCP 63 (85)
T ss_dssp TTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCT
T ss_pred CCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCC
Confidence 67899999998754 57899999999999999987 56787
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.27 E-value=2.3e-12 Score=77.66 Aligned_cols=40 Identities=28% Similarity=0.667 Sum_probs=34.2
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
...|+||++.|.. .+..++|||.||..||..|++.+.+||
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP 61 (99)
T 2y43_A 22 LLRCGICFEYFNI--AMIIPQCSHNYCSLCIRKFLSYKTQCP 61 (99)
T ss_dssp HTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHTTCCBCT
T ss_pred CCCcccCChhhCC--cCEECCCCCHhhHHHHHHHHHCCCCCC
Confidence 5689999999874 333348999999999999999988998
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.27 E-value=1.6e-12 Score=78.68 Aligned_cols=40 Identities=25% Similarity=0.660 Sum_probs=34.1
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCC-CCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER-QHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~-~~CP 114 (114)
+..|+||++.|.. .+..++|||.||..||..|++.+ .+||
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~~~~~CP 62 (100)
T 3lrq_A 22 VFRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQRAQCP 62 (100)
T ss_dssp HTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHTCSBCT
T ss_pred CCCCccCCccccC--ccccCCCCChhhHHHHHHHHHHCcCCCC
Confidence 5689999999874 34448999999999999999987 6898
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.26 E-value=1.7e-12 Score=81.46 Aligned_cols=42 Identities=31% Similarity=0.756 Sum_probs=37.1
Q ss_pred CCcccccCCcCCC----CCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQP----GEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~----~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
...|+||++.|.. +...+.++|+|.||..||.+||+.+.+||
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP 117 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 117 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCT
T ss_pred CCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCC
Confidence 6789999999875 34557889999999999999999999998
No 35
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5.7e-12 Score=73.43 Aligned_cols=39 Identities=31% Similarity=0.715 Sum_probs=33.9
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhC------CCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE------RQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~------~~~CP 114 (114)
...|+||++.+... +.+||+|.||..||..|++. ...||
T Consensus 19 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP 63 (85)
T 2ecv_A 19 EVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCP 63 (85)
T ss_dssp CCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCT
T ss_pred CCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCC
Confidence 67899999998753 56799999999999999987 67788
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.25 E-value=4e-12 Score=77.79 Aligned_cols=40 Identities=28% Similarity=0.681 Sum_probs=34.4
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++.|.+ .+..++|||.||..||..|++.+.+||
T Consensus 15 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP 54 (108)
T 2ckl_A 15 HLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETSKYCP 54 (108)
T ss_dssp GTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSCSBCT
T ss_pred cCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHhCCcCc
Confidence 5689999999874 344449999999999999999988898
No 37
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.24 E-value=1.2e-12 Score=75.63 Aligned_cols=39 Identities=28% Similarity=0.672 Sum_probs=33.6
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhC-------CCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-------RQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~-------~~~CP 114 (114)
+..|+||++.|... +.+||+|.||..||..|++. ...||
T Consensus 12 ~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP 57 (79)
T 2egp_A 12 EVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCP 57 (79)
T ss_dssp CCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCS
T ss_pred CCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCC
Confidence 67899999998754 45899999999999999987 56787
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.21 E-value=6.5e-12 Score=78.59 Aligned_cols=39 Identities=26% Similarity=0.646 Sum_probs=33.4
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCC-CCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ-HCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~-~CP 114 (114)
...|+||++.|... +.+||||.||..||..|++.+. +||
T Consensus 52 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP 91 (124)
T 3fl2_A 52 TFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCP 91 (124)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCT
T ss_pred CCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCC
Confidence 56899999999743 6679999999999999998654 798
No 39
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=7.6e-12 Score=69.83 Aligned_cols=42 Identities=19% Similarity=0.543 Sum_probs=33.5
Q ss_pred CCcccccCC-cCCCCCc-eEEeCCCCcccHHhHHHHHhC-CCCCC
Q psy16979 73 DAQCVICLA-PFQPGEE-VKELLCHHKFHSECLEPWLRE-RQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~-~~~~~~~-~~~lpC~H~FH~~Ci~~Wl~~-~~~CP 114 (114)
+..|+||++ .+..... ...++|||.||..||.+|+.. +..||
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP 47 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCP 47 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCT
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCC
Confidence 568999999 6765543 356799999999999999865 45688
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=73.64 Aligned_cols=39 Identities=26% Similarity=0.664 Sum_probs=33.5
Q ss_pred CCcccccCCcCCCCCceEEeC-CCCcccHHhHHHHHhCC--CCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRER--QHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lp-C~H~FH~~Ci~~Wl~~~--~~CP 114 (114)
+..|+||++.|.+. +.+| |||.|+..||..|+..+ ..||
T Consensus 13 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP 54 (92)
T 3ztg_A 13 ELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCP 54 (92)
T ss_dssp TTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCT
T ss_pred CCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCc
Confidence 67899999999754 6789 99999999999999753 5788
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.20 E-value=1.1e-11 Score=81.11 Aligned_cols=40 Identities=30% Similarity=0.769 Sum_probs=34.0
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhC-CCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-RQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~-~~~CP 114 (114)
...|+||++.|.. .+..+||+|.||..||..|++. +..||
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP 94 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECP 94 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCT
T ss_pred CCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCC
Confidence 4589999999874 4444599999999999999997 67798
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.4e-11 Score=75.50 Aligned_cols=39 Identities=28% Similarity=0.663 Sum_probs=33.1
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCC---CCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ---HCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~---~CP 114 (114)
...|+||++.+... ..+||||.||..||..|+..+. +||
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP 62 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCP 62 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCT
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCc
Confidence 45799999998754 4579999999999999998754 798
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.14 E-value=1.7e-11 Score=76.13 Aligned_cols=39 Identities=28% Similarity=0.763 Sum_probs=33.9
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCC-CCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ-HCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~-~CP 114 (114)
...|+||++.+... +.++|+|.||..||..|++.+. +||
T Consensus 18 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP 57 (118)
T 3hct_A 18 KYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCP 57 (118)
T ss_dssp GGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCT
T ss_pred CCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCC
Confidence 67899999998744 6689999999999999998765 788
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.12 E-value=3.2e-11 Score=77.95 Aligned_cols=39 Identities=23% Similarity=0.562 Sum_probs=33.5
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCC-CCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ-HCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~-~CP 114 (114)
...|+||++.|... +.+||+|.||..||..|++... +||
T Consensus 78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP 117 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCP 117 (150)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCT
T ss_pred CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCC
Confidence 46899999998743 5689999999999999998765 798
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.10 E-value=3.1e-11 Score=74.61 Aligned_cols=39 Identities=28% Similarity=0.569 Sum_probs=33.6
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhC-CCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-RQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~-~~~CP 114 (114)
+..|+||++.+.+. +.++|||.||..||..|++. +.+||
T Consensus 23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP 62 (116)
T 1rmd_A 23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCP 62 (116)
T ss_dssp HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCT
T ss_pred CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCC
Confidence 56899999998643 55899999999999999987 67898
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.09 E-value=1.5e-11 Score=75.99 Aligned_cols=39 Identities=26% Similarity=0.673 Sum_probs=33.6
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhC-CCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-RQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~-~~~CP 114 (114)
+..|+||++.|... +.++|||.||..||..|++. +.+||
T Consensus 15 ~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP 54 (115)
T 3l11_A 15 ECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCP 54 (115)
T ss_dssp HHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCT
T ss_pred CCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCC
Confidence 56899999998743 67799999999999999977 56788
No 47
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.08 E-value=4.7e-11 Score=70.23 Aligned_cols=39 Identities=8% Similarity=-0.039 Sum_probs=35.4
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
...|+||++-|.+. ++++|||.|.+.||..||..+.+||
T Consensus 14 ~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP 52 (85)
T 2kr4_A 14 EFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDP 52 (85)
T ss_dssp TTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCT
T ss_pred heECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCC
Confidence 67899999999865 7789999999999999999888898
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.07 E-value=2e-11 Score=78.18 Aligned_cols=39 Identities=23% Similarity=0.522 Sum_probs=33.7
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCC-CCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ-HCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~-~CP 114 (114)
...|+||++.+.+. +.++|||.||..||..|++... +||
T Consensus 31 ~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP 70 (141)
T 3knv_A 31 KYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCA 70 (141)
T ss_dssp GGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECH
T ss_pred CcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCC
Confidence 67899999998755 5689999999999999998654 787
No 49
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.03 E-value=1.8e-10 Score=66.73 Aligned_cols=42 Identities=17% Similarity=0.481 Sum_probs=32.3
Q ss_pred CCcccccCCcCCCCCc-eEEeCCCCcccHHhHHHHHhC-CCCCC
Q psy16979 73 DAQCVICLAPFQPGEE-VKELLCHHKFHSECLEPWLRE-RQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~-~~~lpC~H~FH~~Ci~~Wl~~-~~~CP 114 (114)
+..|+||++.+...+. +..++|||.|+..||..|++. ...||
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP 54 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCP 54 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCT
T ss_pred CCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCC
Confidence 6789999999865442 222459999999999999854 45687
No 50
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.01 E-value=1.4e-10 Score=70.23 Aligned_cols=39 Identities=8% Similarity=-0.043 Sum_probs=35.5
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
...|+||++-|.+. +++||||.|.+.||..||..+.+||
T Consensus 29 ~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP 67 (100)
T 2kre_A 29 EFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDP 67 (100)
T ss_dssp TTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCS
T ss_pred hhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCC
Confidence 67899999999855 7789999999999999999888898
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.98 E-value=3.5e-10 Score=68.19 Aligned_cols=39 Identities=13% Similarity=-0.034 Sum_probs=35.4
Q ss_pred CCcccccCCcCCCCCceEEeCCC-CcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCH-HKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~-H~FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++-|.+. ++++|| |.|.+.||..||..+.+||
T Consensus 22 ~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP 61 (98)
T 1wgm_A 22 EFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDP 61 (98)
T ss_dssp TTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCT
T ss_pred hcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCC
Confidence 67899999999855 678999 9999999999999888898
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.98 E-value=3e-10 Score=83.10 Aligned_cols=39 Identities=36% Similarity=0.682 Sum_probs=34.4
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHh-CCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR-ERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~-~~~~CP 114 (114)
...|+||++.+.. .+.+||||.||..||..|+. .+.+||
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP 371 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCP 371 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCT
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCC
Confidence 4689999999853 57899999999999999998 678898
No 53
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=2.1e-10 Score=68.63 Aligned_cols=39 Identities=18% Similarity=0.451 Sum_probs=33.0
Q ss_pred CCcccccCCcCCCCCceEEeC-CCCcccHHhHHHHHhCC------CCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRER------QHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lp-C~H~FH~~Ci~~Wl~~~------~~CP 114 (114)
...|+||++.|.+. +++| |||.|.+.||..||..+ .+||
T Consensus 7 ~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP 52 (94)
T 2yu4_A 7 GFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCP 52 (94)
T ss_dssp CCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCC
T ss_pred EeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCC
Confidence 67899999999854 6676 99999999999999764 4788
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=1.7e-10 Score=71.40 Aligned_cols=37 Identities=27% Similarity=0.576 Sum_probs=31.6
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
...|+||++.|... +.+ +|||.||..||..|++ ..||
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP 59 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCP 59 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCS
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCc
Confidence 56899999998744 556 9999999999999998 6687
No 55
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.90 E-value=3e-10 Score=81.80 Aligned_cols=37 Identities=38% Similarity=0.784 Sum_probs=29.9
Q ss_pred CCcccccCCcCCCCCce-----EEeCCCCcccHHhHHHHHhC
Q psy16979 73 DAQCVICLAPFQPGEEV-----KELLCHHKFHSECLEPWLRE 109 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~-----~~lpC~H~FH~~Ci~~Wl~~ 109 (114)
..+|+||++.+.++..+ .-.+|+|.||..||.+||+.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs 349 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKT 349 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHH
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHh
Confidence 67899999999873322 12359999999999999975
No 56
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=6.9e-10 Score=66.17 Aligned_cols=37 Identities=19% Similarity=0.532 Sum_probs=30.8
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE 109 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~ 109 (114)
..+|+||++++...+.+...+|+|.|+.+||..+++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~ 41 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVEL 41 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHH
Confidence 5689999999876655555579999999999999974
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.87 E-value=9.4e-10 Score=61.28 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=32.9
Q ss_pred CCcccccCCcCCCCCceEEe--CCCCc-ccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKEL--LCHHK-FHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l--pC~H~-FH~~Ci~~Wl~~~~~CP 114 (114)
+..|.||++...+. ..+ ||||. |+..|+..|.+.+..||
T Consensus 8 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CP 49 (64)
T 2vje_A 8 IEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCP 49 (64)
T ss_dssp GSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCT
T ss_pred cCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCC
Confidence 56899999986533 444 99999 89999999999888898
No 58
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.85 E-value=5e-10 Score=60.76 Aligned_cols=36 Identities=36% Similarity=0.598 Sum_probs=30.2
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
...|+||++.|... +.|||+|.||..||..| ...||
T Consensus 6 ~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP 41 (56)
T 1bor_A 6 FLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCP 41 (56)
T ss_dssp CSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCS
T ss_pred CCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCC
Confidence 66899999999854 67899999999999885 55676
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.84 E-value=1.2e-09 Score=71.58 Aligned_cols=39 Identities=28% Similarity=0.763 Sum_probs=33.5
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCC-CCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ-HCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~-~CP 114 (114)
...|+||++.+.+. +.++|||.|+..||.+|++.+. +||
T Consensus 18 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP 57 (170)
T 3hcs_A 18 KYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCP 57 (170)
T ss_dssp GGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCT
T ss_pred CCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCC
Confidence 67899999998754 5589999999999999998644 787
No 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.83 E-value=1.8e-09 Score=59.43 Aligned_cols=39 Identities=31% Similarity=0.668 Sum_probs=30.3
Q ss_pred CCcccccCCcCCCCCceEEeCCC--C---cccHHhHHHHHhC--CCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCH--H---KFHSECLEPWLRE--RQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~--H---~FH~~Ci~~Wl~~--~~~CP 114 (114)
...|.||+++. ++.+ .+||. | .||..||.+|+.. +.+||
T Consensus 6 ~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~ 51 (60)
T 1vyx_A 6 VPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQ 51 (60)
T ss_dssp CCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCT
T ss_pred CCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccC
Confidence 67899999983 3343 58965 4 9999999999975 56787
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=2.9e-09 Score=74.04 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=33.9
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCC-CCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER-QHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~-~~CP 114 (114)
...|+||++.|.+. +++||||.|++.||..||..+ .+||
T Consensus 208 ~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP 247 (281)
T 2c2l_A 208 YLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNP 247 (281)
T ss_dssp TTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCT
T ss_pred ccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCc
Confidence 67899999999855 678999999999999999864 4598
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.76 E-value=3.2e-09 Score=58.89 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=32.5
Q ss_pred CCcccccCCcCCCCCceEEeCCCCc-ccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHK-FHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~-FH~~Ci~~Wl~~~~~CP 114 (114)
...|.||++...+. .+..+||||. |+..|+..|.+.+..||
T Consensus 7 ~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CP 48 (63)
T 2vje_B 7 LKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKAGASCP 48 (63)
T ss_dssp GSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHTTCBCT
T ss_pred CCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHhCCcCC
Confidence 57899999985432 1222399998 99999999998888898
No 63
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.76 E-value=1.7e-09 Score=61.81 Aligned_cols=35 Identities=26% Similarity=0.614 Sum_probs=29.5
Q ss_pred CCcccccCCcCCCCCceEEeCCCCc-ccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHK-FHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~-FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++.+.+ ...+||+|. |+..|+..| ..||
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP 59 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCP 59 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCT
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCC
Confidence 5689999998753 477899999 999999998 5676
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.65 E-value=1.1e-08 Score=67.73 Aligned_cols=39 Identities=10% Similarity=0.003 Sum_probs=33.8
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCC-CCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER-QHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~-~~CP 114 (114)
...|+||++-|.+. +++||||.|.+.||..||..+ .+||
T Consensus 106 ~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP 145 (179)
T 2f42_A 106 YLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDP 145 (179)
T ss_dssp GGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCT
T ss_pred hhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCC
Confidence 67899999999854 667999999999999999864 4698
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.62 E-value=9.9e-09 Score=56.63 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=33.3
Q ss_pred CcccccCCcCCCCCceEEe-CCCCcccHHhHHHHHhCCCCCC
Q psy16979 74 AQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~~~~CP 114 (114)
..|+||++.+.+. +.+ ++||.|.+.||.+||+.+.+||
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP 42 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDP 42 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCT
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCc
Confidence 5799999999843 556 8999999999999999888898
No 66
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.51 E-value=5e-08 Score=67.96 Aligned_cols=40 Identities=23% Similarity=0.657 Sum_probs=33.7
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCC--CCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER--QHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~--~~CP 114 (114)
+..|+||++.|. +.|+...|||.|++.||..|++.+ .+||
T Consensus 181 el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CP 222 (267)
T 3htk_C 181 ELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCP 222 (267)
T ss_dssp CSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTTCSCEECS
T ss_pred eeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCC
Confidence 678999999986 456656899999999999999864 3598
No 67
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=4.8e-08 Score=55.78 Aligned_cols=35 Identities=26% Similarity=0.619 Sum_probs=28.0
Q ss_pred CCcccccCCcCCCCCceEEeCCCCc-ccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHK-FHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~-FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++.+.. .+.+||+|. |+..|+.. ...||
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP 60 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCP 60 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCT
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCc
Confidence 4579999999753 467899999 99999964 35676
No 68
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=2.2e-07 Score=52.20 Aligned_cols=35 Identities=29% Similarity=0.654 Sum_probs=28.8
Q ss_pred CCcccccCCcCCCCCceEEeCCCCc-ccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHK-FHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~-FH~~Ci~~Wl~~~~~CP 114 (114)
...|.||++... .++.+||+|. |+..|+.. ...||
T Consensus 15 ~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP 50 (68)
T 2ea5_A 15 SKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCP 50 (68)
T ss_dssp SSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCT
T ss_pred CCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCC
Confidence 678999999864 3588899999 99999984 45676
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.34 E-value=9.7e-08 Score=55.17 Aligned_cols=35 Identities=23% Similarity=0.525 Sum_probs=28.7
Q ss_pred CCcccccCCcCCCCCceEEeCCCCc-ccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHK-FHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~-FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++.+. ..+.+||||. |+..|+..| ..||
T Consensus 18 ~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~----~~CP 53 (79)
T 2yho_A 18 AMLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL----QSCP 53 (79)
T ss_dssp HTBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC----SBCT
T ss_pred CCEeEEeCcccC---cEEEECCCCHHHHHHHHHhc----CcCC
Confidence 457999999865 3578899999 999999877 2676
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.22 E-value=2.3e-07 Score=67.17 Aligned_cols=35 Identities=26% Similarity=0.655 Sum_probs=29.9
Q ss_pred CCcccccCCcCCCCCceEEeCCCCc-ccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHK-FHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~-FH~~Ci~~Wl~~~~~CP 114 (114)
+..|+||++.+. ..+.+||||. ||..|+..| ..||
T Consensus 295 ~~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~----~~CP 330 (345)
T 3t6p_A 295 ERTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL----RKCP 330 (345)
T ss_dssp TCBCTTTSSSBC---CEEEETTCCEEECTTTGGGC----SBCT
T ss_pred CCCCCccCCcCC---ceEEcCCCChhHhHHHHhcC----CcCC
Confidence 568999999986 3477899999 999999988 5677
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.12 E-value=9.2e-07 Score=60.97 Aligned_cols=39 Identities=23% Similarity=0.652 Sum_probs=33.0
Q ss_pred CCcccccCCcCCCCCceEEeC-CCCcccHHhHHHHHhCCC--CCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRERQ--HCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lp-C~H~FH~~Ci~~Wl~~~~--~CP 114 (114)
-..|.||.+-...| .+.+ |+|.||..|+..|++.+. .||
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP 221 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCP 221 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCT
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCC
Confidence 57899999999977 3444 999999999999998754 798
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.01 E-value=5.1e-06 Score=49.66 Aligned_cols=38 Identities=24% Similarity=0.533 Sum_probs=30.5
Q ss_pred cccccCCcCCCCCceEEeCCCCcccHHhHHHHHhC-CCCCC
Q psy16979 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-RQHCP 114 (114)
Q Consensus 75 ~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~-~~~CP 114 (114)
.|.+|--.+. ...+.+||+|+|+.+|+..|.++ .++||
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp 41 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCP 41 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCT
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCc
Confidence 4777776654 45688899999999999999865 57787
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.91 E-value=0.00048 Score=40.84 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=26.7
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPW 106 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~W 106 (114)
+..|.||++.+.......-++|+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4679999987654434445899999999999983
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.34 E-value=0.024 Score=31.20 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=24.7
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE 109 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~ 109 (114)
...|.||.+. ++.+.-=.|...||..|+++.|..
T Consensus 12 ~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~ 45 (66)
T 2lri_C 12 GARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTS 45 (66)
T ss_dssp TCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCC
T ss_pred CCCcCCCCCC---CeEEECCCCCCceecccCCCccCc
Confidence 5679999853 333332249999999999988765
No 75
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=93.80 E-value=0.039 Score=31.79 Aligned_cols=30 Identities=27% Similarity=0.679 Sum_probs=21.9
Q ss_pred CCcccccCCcCCCCCceEEeC---CCCcccHHhHHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKELL---CHHKFHSECLEPW 106 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lp---C~H~FH~~Ci~~W 106 (114)
++.|.||-. |..+ ..+| |+-+||..|+.+=
T Consensus 15 D~~C~VC~~-~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 15 DEMCDVCEV-WTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp SCCCTTTCC-CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CcccCcccc-cccc---ceeccccccccccHhhcccc
Confidence 789999963 2333 3445 7799999999884
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=92.92 E-value=0.085 Score=28.45 Aligned_cols=33 Identities=27% Similarity=0.526 Sum_probs=24.6
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEP 105 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~ 105 (114)
...|+||...+.++...+.- .|..-||..|+.-
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl 39 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKI 39 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTC
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCccccCc
Confidence 56799999998655433333 5999999999853
No 77
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=92.33 E-value=0.15 Score=27.81 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=25.0
Q ss_pred CCcccccCCcCCCCCceEEe--CCCCcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL--LCHHKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l--pC~H~FH~~Ci~ 104 (114)
...|.+|...+.++...+.. .|.--||..|+.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 56899999998877654444 599999999974
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.08 E-value=0.11 Score=42.19 Aligned_cols=39 Identities=8% Similarity=0.019 Sum_probs=34.9
Q ss_pred CCcccccCCcCCCCCceEEeCCC-CcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCH-HKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~-H~FH~~Ci~~Wl~~~~~CP 114 (114)
...|+|-++-+.+. +++|-| +.|-+..|.+||..+.+||
T Consensus 891 ~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP 930 (968)
T 3m62_A 891 EFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDP 930 (968)
T ss_dssp GGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCT
T ss_pred HhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCC
Confidence 67799999999866 779987 6899999999999999998
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=92.01 E-value=0.13 Score=28.56 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=23.8
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHHHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWL 107 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~Wl 107 (114)
...|.||..... ++..+.. .|.-.||..|+..-+
T Consensus 18 ~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~ 52 (75)
T 2k16_A 18 IWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMA 52 (75)
T ss_dssp EECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSS
T ss_pred CcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCc
Confidence 556999988754 3333333 499999999986533
No 80
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=91.48 E-value=0.098 Score=28.35 Aligned_cols=33 Identities=24% Similarity=0.622 Sum_probs=23.7
Q ss_pred CCcccccCCcCCC-CCceEEe-CCCCcccHHhHHH
Q psy16979 73 DAQCVICLAPFQP-GEEVKEL-LCHHKFHSECLEP 105 (114)
Q Consensus 73 ~~~C~ICl~~~~~-~~~~~~l-pC~H~FH~~Ci~~ 105 (114)
+..|.||...... +..+..- .|.-.||..|+.+
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p 40 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTP 40 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSS
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCC
Confidence 6789999987543 2233333 4999999999875
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=91.34 E-value=0.18 Score=25.85 Aligned_cols=31 Identities=26% Similarity=0.555 Sum_probs=21.8
Q ss_pred cccccCCcCCCCCceEEeCCCCcccHHhHHH
Q psy16979 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEP 105 (114)
Q Consensus 75 ~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~ 105 (114)
.|.||...-..++.+.--.|...||..|+.+
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCT
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCC
Confidence 5899987643343333335999999999965
No 82
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=90.75 E-value=0.15 Score=30.53 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=24.5
Q ss_pred CCcccccCCcCCCCCceEEe--CCCCcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL--LCHHKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l--pC~H~FH~~Ci~ 104 (114)
...|.||...+.++...+.. .|.--||..|+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg 36 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTG 36 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCC
Confidence 35799999998766544444 489999999974
No 83
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=90.67 E-value=0.15 Score=33.55 Aligned_cols=31 Identities=19% Similarity=0.489 Sum_probs=24.8
Q ss_pred CcccccCCcCCCCCc---eEEe-CCCCcccHHhHH
Q psy16979 74 AQCVICLAPFQPGEE---VKEL-LCHHKFHSECLE 104 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~---~~~l-pC~H~FH~~Ci~ 104 (114)
..|+||...|.+++. .+.. -|..-||..|+.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvg 37 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCEN 37 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccc
Confidence 469999999988762 4444 499999999974
No 84
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=89.70 E-value=0.24 Score=29.60 Aligned_cols=36 Identities=22% Similarity=0.498 Sum_probs=25.9
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHh
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR 108 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~ 108 (114)
++.|.||.+.=+..+.+.--.|...||..|+...+.
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 788999987633232344345999999999987654
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.42 E-value=0.17 Score=26.54 Aligned_cols=33 Identities=27% Similarity=0.704 Sum_probs=23.6
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHh
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR 108 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~ 108 (114)
+..|.||.+. ++.+.--.|...||..|+.+=|.
T Consensus 9 ~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~ 41 (56)
T 2yql_A 9 EDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLK 41 (56)
T ss_dssp CCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCC
T ss_pred CCCCccCCCC---CeEEEcCCCCcceECccCCCCcC
Confidence 6789999974 43333335999999999976443
No 86
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=88.91 E-value=0.73 Score=25.47 Aligned_cols=33 Identities=30% Similarity=0.580 Sum_probs=23.3
Q ss_pred CCcccccCCcC-CCCCceEEe-CCCCcccHHhHHH
Q psy16979 73 DAQCVICLAPF-QPGEEVKEL-LCHHKFHSECLEP 105 (114)
Q Consensus 73 ~~~C~ICl~~~-~~~~~~~~l-pC~H~FH~~Ci~~ 105 (114)
+..|.||.+.- ..++.+..- .|.-.||..|+..
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~ 50 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV 50 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCccccccCCC
Confidence 67899998764 223333333 4999999999864
No 87
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=88.76 E-value=0.27 Score=26.69 Aligned_cols=32 Identities=34% Similarity=0.691 Sum_probs=22.8
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWL 107 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl 107 (114)
+..|.||.+. ++.+.-=.|.-.||..|+.+=|
T Consensus 8 ~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl 39 (66)
T 1xwh_A 8 EDECAVCRDG---GELICCDGCPRAFHLACLSPPL 39 (66)
T ss_dssp CCSBSSSSCC---SSCEECSSCCCEECTTTSSSCC
T ss_pred CCCCccCCCC---CCEEEcCCCChhhcccccCCCc
Confidence 6789999964 3333333499999999987543
No 88
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.68 E-value=0.51 Score=25.18 Aligned_cols=33 Identities=27% Similarity=0.628 Sum_probs=23.4
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHh
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR 108 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~ 108 (114)
+..|.||... ++.+.--.|...||..|+.+=+.
T Consensus 11 ~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~ 43 (61)
T 2l5u_A 11 QDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDME 43 (61)
T ss_dssp CSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCC
T ss_pred CCCCccCCCC---CcEEECCCCChhhhhhccCCCCC
Confidence 6789999863 33333224999999999987543
No 89
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=88.47 E-value=0.29 Score=26.00 Aligned_cols=32 Identities=28% Similarity=0.698 Sum_probs=22.9
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWL 107 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl 107 (114)
+..|.||... ++.+.-=.|.-.||..|+.+=|
T Consensus 5 ~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl 36 (60)
T 2puy_A 5 EDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPL 36 (60)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECGGGSSSCC
T ss_pred CCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCc
Confidence 6789999974 4333333599999999997544
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=87.18 E-value=0.24 Score=26.54 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=22.3
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWL 107 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl 107 (114)
+..|.||.+. ++.+.-=.|...||..|+.+=|
T Consensus 9 ~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl 40 (61)
T 1mm2_A 9 MEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPL 40 (61)
T ss_dssp CSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCC
T ss_pred CCcCCCCCCC---CCEEEcCCCCHHHcccccCCCc
Confidence 6789999852 3333222488999999998544
No 91
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=86.25 E-value=0.82 Score=26.30 Aligned_cols=33 Identities=27% Similarity=0.555 Sum_probs=22.8
Q ss_pred CCcccccCCcCC-CCCceEEe-CCCCcccHHhHHH
Q psy16979 73 DAQCVICLAPFQ-PGEEVKEL-LCHHKFHSECLEP 105 (114)
Q Consensus 73 ~~~C~ICl~~~~-~~~~~~~l-pC~H~FH~~Ci~~ 105 (114)
+..|.||...-. .++.+... .|.-.||..|+..
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p 59 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGV 59 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTC
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCC
Confidence 678999997632 22233333 3889999999864
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=86.20 E-value=0.65 Score=27.81 Aligned_cols=32 Identities=28% Similarity=0.550 Sum_probs=22.0
Q ss_pred CCcccccCCcCC------CCCceEEeCCCCcccHHhHH
Q psy16979 73 DAQCVICLAPFQ------PGEEVKELLCHHKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~------~~~~~~~lpC~H~FH~~Ci~ 104 (114)
...|.+|+..=. .++.+.--.|+..||..||.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 567999997631 22233333599999999995
No 93
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=85.65 E-value=1 Score=27.95 Aligned_cols=30 Identities=27% Similarity=0.594 Sum_probs=22.3
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPW 106 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~W 106 (114)
++.|.||.+. ..+..- .|...||.+||.+=
T Consensus 57 ~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~ 87 (129)
T 3ql9_A 57 DEQCRWCAEG----GNLICCDFCHNAFCKKCILRN 87 (129)
T ss_dssp BSSCTTTCCC----SEEEECSSSSCEEEHHHHHHH
T ss_pred CCcCeecCCC----CeeEecCCCchhhhHHHhCCC
Confidence 7789999954 333333 38899999999974
No 94
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=84.80 E-value=0.39 Score=28.44 Aligned_cols=12 Identities=42% Similarity=1.082 Sum_probs=10.8
Q ss_pred cccHHhHHHHHh
Q psy16979 97 KFHSECLEPWLR 108 (114)
Q Consensus 97 ~FH~~Ci~~Wl~ 108 (114)
.||+.|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999986
No 95
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=84.71 E-value=0.39 Score=28.37 Aligned_cols=12 Identities=42% Similarity=1.063 Sum_probs=10.8
Q ss_pred cccHHhHHHHHh
Q psy16979 97 KFHSECLEPWLR 108 (114)
Q Consensus 97 ~FH~~Ci~~Wl~ 108 (114)
.||+.|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999986
No 96
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=84.30 E-value=1.3 Score=27.91 Aligned_cols=31 Identities=29% Similarity=0.618 Sum_probs=23.6
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHHHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWL 107 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~Wl 107 (114)
++.|.||.+. ..+... .|...||..||.+=|
T Consensus 63 ~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l 94 (142)
T 2lbm_A 63 DEQCRWCAEG----GNLICCDFCHNAFCKKCILRNL 94 (142)
T ss_dssp BCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHT
T ss_pred CCeecccCCC----CcEEeCCCCCCeeeHhhcCCCC
Confidence 7889999953 333333 499999999999765
No 97
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=84.28 E-value=0.31 Score=28.23 Aligned_cols=33 Identities=33% Similarity=0.686 Sum_probs=23.2
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHh
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR 108 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~ 108 (114)
+..|.||... |+.+.--.|.-.||..|+.+=|.
T Consensus 25 ~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~ 57 (88)
T 1fp0_A 25 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQ 57 (88)
T ss_dssp SSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCC
T ss_pred CCcCcCcCCC---CCEEECCCCCCceecccCCCCCC
Confidence 7789999964 33322224889999999976443
No 98
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.99 E-value=0.56 Score=26.96 Aligned_cols=35 Identities=29% Similarity=0.730 Sum_probs=24.3
Q ss_pred CCcccccCCcCCC-CCceEEe-CCCCcccHHhHHHHH
Q psy16979 73 DAQCVICLAPFQP-GEEVKEL-LCHHKFHSECLEPWL 107 (114)
Q Consensus 73 ~~~C~ICl~~~~~-~~~~~~l-pC~H~FH~~Ci~~Wl 107 (114)
+..|.||...-.. ++.+... .|...||..|+.+=|
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl 52 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQV 52 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcc
Confidence 5689999986433 2333433 499999999987543
No 99
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=83.96 E-value=0.24 Score=32.29 Aligned_cols=33 Identities=30% Similarity=0.633 Sum_probs=23.6
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHHHHHhC
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE 109 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~ 109 (114)
++.|.||.+. |+ +... .|.-.||..|+.+-|..
T Consensus 4 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~ 37 (184)
T 3o36_A 4 EDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTN 37 (184)
T ss_dssp CSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSS
T ss_pred CCccccCCCC---Ce-eeecCCCCcccCccccCCCCCC
Confidence 6789999843 44 3333 49999999999775543
No 100
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=83.48 E-value=1 Score=25.44 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=24.1
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEP 105 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~ 105 (114)
...|.+|...|..-..---. .||.+|+..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 56799999999865422222 4999999999653
No 101
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=83.23 E-value=0.26 Score=32.75 Aligned_cols=33 Identities=27% Similarity=0.593 Sum_probs=23.4
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHHHHHhC
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRE 109 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~~ 109 (114)
++.|.+|... | .+... .|...||..|+.+-|..
T Consensus 7 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~ 40 (207)
T 3u5n_A 7 EDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLS 40 (207)
T ss_dssp CSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSS
T ss_pred CCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCC
Confidence 6789999843 3 33333 38899999999775543
No 102
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.07 E-value=0.89 Score=25.20 Aligned_cols=31 Identities=26% Similarity=0.542 Sum_probs=22.2
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~ 104 (114)
..-| ||...+..+..|.--.|..-||..|+.
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvg 46 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVG 46 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEc
Confidence 3456 899887644444444599999999984
No 103
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=83.07 E-value=0.79 Score=28.54 Aligned_cols=31 Identities=16% Similarity=0.432 Sum_probs=23.3
Q ss_pred CCcccccCCcCC-CCCceEEe-CCCCcccHHhH
Q psy16979 73 DAQCVICLAPFQ-PGEEVKEL-LCHHKFHSECL 103 (114)
Q Consensus 73 ~~~C~ICl~~~~-~~~~~~~l-pC~H~FH~~Ci 103 (114)
+..|.+|...|. .+...+.. .|.|.++..|-
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 678999999994 33433444 49999999884
No 104
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=82.94 E-value=0.63 Score=27.98 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=22.5
Q ss_pred CcccccCCcCC----CC---CceEEeCCCCcccHHhHHHH
Q psy16979 74 AQCVICLAPFQ----PG---EEVKELLCHHKFHSECLEPW 106 (114)
Q Consensus 74 ~~C~ICl~~~~----~~---~~~~~lpC~H~FH~~Ci~~W 106 (114)
+.|.||+..-. .| +.+.--.|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 56999997641 12 23333359999999998754
No 105
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=82.93 E-value=0.71 Score=23.72 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=22.1
Q ss_pred cccccCCcCCCCCceEE-e-CCCCcccHHhHH
Q psy16979 75 QCVICLAPFQPGEEVKE-L-LCHHKFHSECLE 104 (114)
Q Consensus 75 ~C~ICl~~~~~~~~~~~-l-pC~H~FH~~Ci~ 104 (114)
.|.||...+.++...+. - .|.--||..|+.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvg 35 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVG 35 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTT
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccC
Confidence 48899998866554333 3 488899999975
No 106
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=82.56 E-value=0.4 Score=22.01 Aligned_cols=28 Identities=25% Similarity=0.552 Sum_probs=20.6
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHh
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSEC 102 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~C 102 (114)
.+.|+.|-..+-..+++. -=+..||+.|
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CCBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CCcCCccCCEEecceeEE--ECCeEecccC
Confidence 357999998877665443 3468999988
No 107
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.18 E-value=1.3 Score=24.72 Aligned_cols=31 Identities=26% Similarity=0.732 Sum_probs=21.8
Q ss_pred CCcccccCCcCCCCC-ceEEeCCCCcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGE-EVKELLCHHKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~-~~~~lpC~H~FH~~Ci~ 104 (114)
..-| ||...+..+. .|.--.|..-||..|+.
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvg 43 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVG 43 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHT
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecC
Confidence 3446 9999886444 44433599999999985
No 108
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=79.97 E-value=0.54 Score=27.59 Aligned_cols=37 Identities=24% Similarity=0.511 Sum_probs=28.9
Q ss_pred CCcccccCCcCCCCCceEEeCCC-CcccHHhHHHHHhCCCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCH-HKFHSECLEPWLRERQHCP 114 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~-H~FH~~Ci~~Wl~~~~~CP 114 (114)
-..|-.|+-+.+ ....|. |.++..|+..-|.....||
T Consensus 28 ~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCp 65 (99)
T 2ko5_A 28 PQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCP 65 (99)
T ss_dssp CCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEET
T ss_pred cccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCc
Confidence 567999997643 233465 9999999999888888776
No 109
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=79.75 E-value=2.6 Score=24.02 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=29.0
Q ss_pred CCcccccCCcCCCCCceEEeC--CCCcccHHhHHHHHhC
Q psy16979 73 DAQCVICLAPFQPGEEVKELL--CHHKFHSECLEPWLRE 109 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lp--C~H~FH~~Ci~~Wl~~ 109 (114)
...|.+|.+.+++. ..+..| =.|.|+..|-+.-+++
T Consensus 15 ~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHh
Confidence 56799999998765 445556 4599999999999875
No 110
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=79.39 E-value=1.4 Score=26.95 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=24.1
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEP 105 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~ 105 (114)
...|.+|...|..-..--.. .||++|+..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 45799999999855422222 5999999999643
No 111
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=78.89 E-value=2.3 Score=24.33 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=23.5
Q ss_pred CCcccccCCcCCCCCceEE-eCCCCcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGEEVKE-LLCHHKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~-lpC~H~FH~~Ci~ 104 (114)
...|.+|...|..-..--- -.||++|+..|..
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 5689999999986542222 2499999999864
No 112
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=78.80 E-value=1.6 Score=25.06 Aligned_cols=33 Identities=18% Similarity=0.441 Sum_probs=24.3
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEP 105 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~ 105 (114)
...|.+|...|..-..--.. .||++|+..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 45799999999865432223 5999999999654
No 113
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=78.74 E-value=2.4 Score=23.96 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=24.5
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEP 105 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~ 105 (114)
...|.+|...|..-..---. .||++|+..|...
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 56899999999865432222 4999999999654
No 114
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=78.67 E-value=1.3 Score=28.39 Aligned_cols=31 Identities=23% Similarity=0.560 Sum_probs=22.7
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~ 104 (114)
..-| ||...+.++...+.. .|...||..|+.
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~ 39 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVG 39 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHT
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcC
Confidence 4568 999887644444444 499999999985
No 115
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.31 E-value=0.43 Score=27.73 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=22.5
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEP 105 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~ 105 (114)
...|.||...-..+ .++.. .|...||..|+.+
T Consensus 16 ~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~P 48 (92)
T 2e6r_A 16 SYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLP 48 (92)
T ss_dssp CCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSS
T ss_pred CCCCccCCCcCCCC-CEEEcCCCCchhccccCCC
Confidence 56799999764322 33333 4999999999874
No 116
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=78.25 E-value=1.8 Score=23.84 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=23.1
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~ 104 (114)
+..|.+|...|..-..---. .||.+|+..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 35799999999754322222 499999999964
No 117
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.04 E-value=1.7 Score=24.22 Aligned_cols=31 Identities=19% Similarity=0.504 Sum_probs=23.2
Q ss_pred CCcccccCCcCCCCCceEEe--CCCCcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL--LCHHKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l--pC~H~FH~~Ci~ 104 (114)
...| ||......+..|.-= .|..-||..|+.
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVg 48 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVI 48 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHS
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEc
Confidence 4567 899886566555555 599999999984
No 118
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=76.78 E-value=1.7 Score=23.64 Aligned_cols=31 Identities=26% Similarity=0.620 Sum_probs=22.2
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~ 104 (114)
...| ||...+..+..|.--.|..-||..|+.
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvg 49 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAK 49 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTTTCCEEETTTTT
T ss_pred ceEe-ECCCcCCCCCEEECCCCCccccccccC
Confidence 4568 999876533344444599999999985
No 119
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=75.97 E-value=0.97 Score=26.46 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=22.6
Q ss_pred CcccccCCcCCCCCceEEeCCCCcccHHhHHH
Q psy16979 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEP 105 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~ 105 (114)
..| ||......+..+.-=.|.-.||..|+..
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~ 59 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGI 59 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTC
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCC
Confidence 457 8988766665444445999999999864
No 120
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=75.59 E-value=0.54 Score=30.88 Aligned_cols=33 Identities=33% Similarity=0.686 Sum_probs=22.7
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHh
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR 108 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~ 108 (114)
++.|.+|.+. |+.+..-.|...||..|+.+=|.
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~ 34 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQ 34 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcc
Confidence 4679999954 44333334889999999975443
No 121
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=75.07 E-value=1.7 Score=25.97 Aligned_cols=34 Identities=26% Similarity=0.537 Sum_probs=22.3
Q ss_pred cccccCCcCCCCCceEEe-CCCCcccHHhHHHHHh
Q psy16979 75 QCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLR 108 (114)
Q Consensus 75 ~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~ 108 (114)
.|.||.+.-.+++.+..- .|...||..|+++=|.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~ 97 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLT 97 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCS
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCC
Confidence 688998652232333333 4999999999976443
No 122
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=74.77 E-value=1.7 Score=29.00 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=24.0
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~ 104 (114)
+..|.+|...|..-..--.. .||++|+..|..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 57899999999755432223 499999999954
No 123
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.54 E-value=1.2 Score=25.01 Aligned_cols=32 Identities=25% Similarity=0.611 Sum_probs=21.8
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEP 105 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~ 105 (114)
+..|.||...=..+ .+..- .|...||..|+.+
T Consensus 26 ~c~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~P 58 (77)
T 2e6s_A 26 SCSCRVCGGKHEPN-MQLLCDECNVAYHIYCLNP 58 (77)
T ss_dssp SSSCSSSCCCCCST-TEEECSSSCCEEETTSSSS
T ss_pred CCCCcCcCCcCCCC-CEEEcCCCCccccccccCC
Confidence 44788998653233 33333 4999999999974
No 124
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.34 E-value=1.3 Score=24.31 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=22.3
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEP 105 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~ 105 (114)
...| ||......+...+.. .|..-||..|+.-
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~ 48 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGI 48 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTC
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeecc
Confidence 4458 798887666533333 5999999999753
No 125
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=74.19 E-value=1.7 Score=29.20 Aligned_cols=33 Identities=18% Similarity=0.413 Sum_probs=24.5
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEP 105 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~ 105 (114)
+..|.+|...|..-..--.. .||++|+..|-..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 56899999999865432223 4999999999643
No 126
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.59 E-value=3.4 Score=23.25 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=23.5
Q ss_pred CCcccccCCcCCCCCc-eEEeCCCCcccHHhHHH
Q psy16979 73 DAQCVICLAPFQPGEE-VKELLCHHKFHSECLEP 105 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~-~~~lpC~H~FH~~Ci~~ 105 (114)
...|.+|...|..-.. .---.||.+|+..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 4689999999975432 22225999999999643
No 127
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=72.14 E-value=1.5 Score=26.33 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=21.4
Q ss_pred cccccCCcCCCCCceEEeCCCCcccHHhHHH
Q psy16979 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEP 105 (114)
Q Consensus 75 ~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~ 105 (114)
.|.||...-..++.+.--.|...||..|+.+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~p 90 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNP 90 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSS
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCC
Confidence 5888887643443333335999999999874
No 128
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=72.05 E-value=1.9 Score=25.51 Aligned_cols=31 Identities=23% Similarity=0.536 Sum_probs=20.6
Q ss_pred cccccCCcCCCCCceEEe-CCCCcccHHhHHHH
Q psy16979 75 QCVICLAPFQPGEEVKEL-LCHHKFHSECLEPW 106 (114)
Q Consensus 75 ~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~W 106 (114)
.|.||...-.+. .+..- .|...||..|+.+=
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~pp 87 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPV 87 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSC
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCc
Confidence 577887663332 33333 49999999999753
No 129
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=71.63 E-value=3.5 Score=22.49 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=23.7
Q ss_pred CCcccccCCcCCCCCceEEeCC-CCcccHHhHHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLC-HHKFHSECLEPW 106 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC-~H~FH~~Ci~~W 106 (114)
..-|.||.++ ..++-+.| +-.|+..|..+-
T Consensus 8 ~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 8 LPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 5679999987 35777789 689999997653
No 130
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=71.45 E-value=1.2 Score=24.40 Aligned_cols=30 Identities=27% Similarity=0.600 Sum_probs=19.0
Q ss_pred cccccCCcCCCCCceEEe-CCCCcccHHhHHH
Q psy16979 75 QCVICLAPFQPGEEVKEL-LCHHKFHSECLEP 105 (114)
Q Consensus 75 ~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~ 105 (114)
.|.||...-. +..+..- .|...||..|+.+
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~P 50 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDP 50 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSS
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCC
Confidence 4667775422 2233333 3889999999984
No 131
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=71.28 E-value=2.4 Score=25.27 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=20.4
Q ss_pred CCcccccCCcCCCCCceEEe---CCCCcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL---LCHHKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l---pC~H~FH~~Ci~ 104 (114)
++.|.+|.+ .|+ ++.- .|...||..|+.
T Consensus 15 ~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 15 EDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp CSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT
T ss_pred CCCCCcCCC---CCc-EeEECCCCCCcccccccCc
Confidence 778999983 233 3333 388999999997
No 132
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=70.26 E-value=1.2 Score=24.28 Aligned_cols=14 Identities=21% Similarity=0.486 Sum_probs=8.5
Q ss_pred CCcccccCCcCCCC
Q psy16979 73 DAQCVICLAPFQPG 86 (114)
Q Consensus 73 ~~~C~ICl~~~~~~ 86 (114)
=..|..|...+..+
T Consensus 27 CF~C~~C~~~L~~~ 40 (76)
T 1iml_A 27 CLKCEKCGKTLTSG 40 (76)
T ss_dssp TCBCTTTCCBCCTT
T ss_pred CCCccccCccCCCC
Confidence 35666776666554
No 133
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=69.78 E-value=1.1 Score=21.13 Aligned_cols=14 Identities=14% Similarity=0.475 Sum_probs=10.9
Q ss_pred CCcccccCCcCCCC
Q psy16979 73 DAQCVICLAPFQPG 86 (114)
Q Consensus 73 ~~~C~ICl~~~~~~ 86 (114)
...||||+.++...
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 46799999987643
No 134
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=68.46 E-value=3 Score=25.40 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCcccccCCcCCCCCce-EEeCCCCcccHHhHHHH
Q psy16979 73 DAQCVICLAPFQPGEEV-KELLCHHKFHSECLEPW 106 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~-~~lpC~H~FH~~Ci~~W 106 (114)
...|..|...|..-..- ---.||.+|+..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCC
Confidence 45799999999754322 22359999999996543
No 135
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=67.30 E-value=3.3 Score=26.32 Aligned_cols=31 Identities=23% Similarity=0.583 Sum_probs=23.5
Q ss_pred CCcccccCCcCC--CCCceEEeCCCCcccHHhH
Q psy16979 73 DAQCVICLAPFQ--PGEEVKELLCHHKFHSECL 103 (114)
Q Consensus 73 ~~~C~ICl~~~~--~~~~~~~lpC~H~FH~~Ci 103 (114)
+..|.+|...|. .+.......|.|.++..|-
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 678999999865 3334444459999999995
No 136
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=66.59 E-value=7.6 Score=24.86 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=25.1
Q ss_pred CCcccccCCcCCCCCceEEe---CCCCcccHHhHHHHHhC
Q psy16979 73 DAQCVICLAPFQPGEEVKEL---LCHHKFHSECLEPWLRE 109 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l---pC~H~FH~~Ci~~Wl~~ 109 (114)
+.-|.||-+. ..+... .|...|+.+||+.++..
T Consensus 79 ~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 79 QSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp BSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred cceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 7789999853 444444 38899999999998754
No 137
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.53 E-value=2.7 Score=22.74 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=14.3
Q ss_pred CcccccCCcCCCCCceEEeCCCCcccHHh
Q psy16979 74 AQCVICLAPFQPGEEVKELLCHHKFHSEC 102 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~lpC~H~FH~~C 102 (114)
..|+.|-+.+..++.+. .-+..||..|
T Consensus 10 ~~C~~C~~~I~~~~~v~--a~~~~~H~~C 36 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVS--SLGKDWHKFC 36 (76)
T ss_dssp CBCTTTCCBCCTTTEEE--ETTEEEETTT
T ss_pred CCCcCCCCEeECCeEEE--ECCeEeeCCC
Confidence 45666666665554332 2345555555
No 138
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.17 E-value=3.3 Score=22.90 Aligned_cols=29 Identities=21% Similarity=0.644 Sum_probs=18.6
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECL 103 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci 103 (114)
...|.-|-+.+..++.+..+ +..||..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~--~~~wH~~CF 43 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLAL--DKQWHVSCF 43 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEET--TEEECTTTC
T ss_pred CCCCcCcCCeeCCCeEEEEC--CcccccccC
Confidence 45688888877766554433 566777663
No 139
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.32 E-value=4.7 Score=22.27 Aligned_cols=29 Identities=24% Similarity=0.501 Sum_probs=18.7
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECL 103 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci 103 (114)
...|..|-..+..++.+. .=+..||..|.
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF 43 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSCF 43 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTTC
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCcC
Confidence 456888888776655443 24567777763
No 140
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=63.43 E-value=2.3 Score=28.85 Aligned_cols=35 Identities=29% Similarity=0.566 Sum_probs=19.5
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWL 107 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl 107 (114)
+..|.+|...=..+..+..=.|...||..|+.+=|
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL 208 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPL 208 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCC
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCc
Confidence 34588887653233332222499999999998533
No 141
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=61.41 E-value=1.2 Score=25.28 Aligned_cols=18 Identities=28% Similarity=0.768 Sum_probs=14.9
Q ss_pred eEEeC-CCCcccHHhHHHH
Q psy16979 89 VKELL-CHHKFHSECLEPW 106 (114)
Q Consensus 89 ~~~lp-C~H~FH~~Ci~~W 106 (114)
.+..| |++.|+..|-.+|
T Consensus 43 ~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 43 EATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CEECTTTCCEECSSSCSBC
T ss_pred ceEeCCCCCccccccCCch
Confidence 35667 9999999998888
No 142
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=61.40 E-value=2 Score=24.07 Aligned_cols=33 Identities=30% Similarity=0.600 Sum_probs=20.0
Q ss_pred cccccCCcCCCCCceEEe-CCCCcccHHhHHHHHh
Q psy16979 75 QCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLR 108 (114)
Q Consensus 75 ~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~~Wl~ 108 (114)
.|.||...-..+ .+..- .|...||..|+.+=|.
T Consensus 28 ~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~ 61 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLS 61 (77)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCS
T ss_pred cCCccCCCCCCc-ceeEeCCCCCccCcccCCCccc
Confidence 466666543222 22222 4889999999986443
No 143
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.57 E-value=7 Score=21.28 Aligned_cols=28 Identities=18% Similarity=0.504 Sum_probs=14.0
Q ss_pred CcccccCCcCCCCCceEEeCCCCcccHHh
Q psy16979 74 AQCVICLAPFQPGEEVKELLCHHKFHSEC 102 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~lpC~H~FH~~C 102 (114)
..|..|-+.+..++.++ ..=+..||..|
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~C 43 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EYKGTVWHKDC 43 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-ECSSCEEETTT
T ss_pred CcCccCCcccccCceEE-EECcccccccc
Confidence 45666666665544321 12245555555
No 144
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=57.49 E-value=4.3 Score=20.59 Aligned_cols=28 Identities=25% Similarity=0.596 Sum_probs=19.0
Q ss_pred cccCCcCCCCCceEEeCCCCcccHHhHH
Q psy16979 77 VICLAPFQPGEEVKELLCHHKFHSECLE 104 (114)
Q Consensus 77 ~ICl~~~~~~~~~~~lpC~H~FH~~Ci~ 104 (114)
-||......+..+.--.|.--||..|+.
T Consensus 7 C~C~~~~~~~~MI~Cd~C~~W~H~~Cvg 34 (52)
T 3o7a_A 7 CFCMKPFAGRPMIECNECHTWIHLSCAK 34 (52)
T ss_dssp STTCCBCTTCCEEECTTTCCEEETTTTT
T ss_pred EEeCCcCCCCCEEEcCCCCccccccccC
Confidence 3787765533444444599999999985
No 145
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.75 E-value=8.3 Score=22.23 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=19.5
Q ss_pred CCcccccCCcCCCCCceEEeC--CC-CcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGEEVKELL--CH-HKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lp--C~-H~FH~~Ci~ 104 (114)
..-| ||..... ++.+.-=. |. ..||..|+.
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg 68 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG 68 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC
Confidence 4456 9998653 44433334 65 689999986
No 146
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.56 E-value=6.7 Score=20.72 Aligned_cols=11 Identities=27% Similarity=0.582 Sum_probs=4.8
Q ss_pred CcccccCCcCC
Q psy16979 74 AQCVICLAPFQ 84 (114)
Q Consensus 74 ~~C~ICl~~~~ 84 (114)
..|..|...+.
T Consensus 34 F~C~~C~~~L~ 44 (72)
T 1wyh_A 34 FLCSGCEQPLG 44 (72)
T ss_dssp CBCTTTCCBTT
T ss_pred CeECCCCCcCC
Confidence 34444444443
No 147
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=55.80 E-value=13 Score=20.24 Aligned_cols=32 Identities=19% Similarity=0.489 Sum_probs=21.7
Q ss_pred CCcccccCCcCCCCC-ceEEeCCCCcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGE-EVKELLCHHKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~-~~~~lpC~H~FH~~Ci~ 104 (114)
...-.||...+..+. .+.--.|.--||..|+.
T Consensus 9 ~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg 41 (75)
T 3kqi_A 9 VPVYCVCRLPYDVTRFMIECDACKDWFHGSCVG 41 (75)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHT
T ss_pred CeeEEECCCcCCCCCCEEEcCCCCCCEeccccc
Confidence 344559988775443 33333599999999984
No 148
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=55.45 E-value=0.74 Score=25.92 Aligned_cols=16 Identities=31% Similarity=0.629 Sum_probs=13.8
Q ss_pred CCCCcccHHhHHHHHh
Q psy16979 93 LCHHKFHSECLEPWLR 108 (114)
Q Consensus 93 pC~H~FH~~Ci~~Wl~ 108 (114)
.|++.|+..|-..|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 4999999999988854
No 149
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=55.24 E-value=3.7 Score=22.15 Aligned_cols=28 Identities=21% Similarity=0.529 Sum_probs=19.6
Q ss_pred cccccCCcCCCCCceEEe--CCCCcccHHhH
Q psy16979 75 QCVICLAPFQPGEEVKEL--LCHHKFHSECL 103 (114)
Q Consensus 75 ~C~ICl~~~~~~~~~~~l--pC~H~FH~~Ci 103 (114)
.| ||......+..|.-= .|..-||..|+
T Consensus 12 ~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cv 41 (68)
T 2rsd_A 12 RC-ICSSTMVNDSMIQCEDQRCQVWQHLNCV 41 (68)
T ss_dssp CC-TTCCCSCCSCEEECSCTTTCEEEETTTS
T ss_pred Ee-ECCCCcCCCCEEEECCCCCCCeEchhhC
Confidence 46 898776666544332 28889999997
No 150
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=55.00 E-value=2.5 Score=30.63 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred CCcccccCCcCCCCCce-EEeCCCCcccHHhHHHHH
Q psy16979 73 DAQCVICLAPFQPGEEV-KELLCHHKFHSECLEPWL 107 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~-~~lpC~H~FH~~Ci~~Wl 107 (114)
...|.+|...|..-..- ..-.||++|+..|...+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 56899999998754322 222599999999987654
No 151
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=54.72 E-value=5 Score=20.96 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=16.4
Q ss_pred CCcccccCCcCCCCCceEEeC---CCCcc
Q psy16979 73 DAQCVICLAPFQPGEEVKELL---CHHKF 98 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lp---C~H~F 98 (114)
--.|++|...+...+...+.+ |++.|
T Consensus 10 iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred heeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 457999999865443323333 77776
No 152
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=53.70 E-value=15 Score=19.52 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=21.5
Q ss_pred CCcccccCCc-CCCCCceEEeCCCCcccHHhHHH
Q psy16979 73 DAQCVICLAP-FQPGEEVKELLCHHKFHSECLEP 105 (114)
Q Consensus 73 ~~~C~ICl~~-~~~~~~~~~lpC~H~FH~~Ci~~ 105 (114)
...|.||+.. |.+|---.---|.-.|+..|-..
T Consensus 9 ~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~ 42 (62)
T 2a20_A 9 APTCGICHKTKFADGCGHNCSYCQTKFCARCGGR 42 (62)
T ss_dssp CCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEE
T ss_pred cchhhhhccceeccCCCccccccCCeeecccCCE
Confidence 6789999976 55554333334777777776433
No 153
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.53 E-value=7.9 Score=20.42 Aligned_cols=11 Identities=27% Similarity=0.697 Sum_probs=5.1
Q ss_pred cccccCCcCCC
Q psy16979 75 QCVICLAPFQP 85 (114)
Q Consensus 75 ~C~ICl~~~~~ 85 (114)
.|+.|-+.+..
T Consensus 7 ~C~~C~~~I~~ 17 (72)
T 1x4k_A 7 GCQECKKTIMP 17 (72)
T ss_dssp CBSSSCCCCCS
T ss_pred CCccCCCcccC
Confidence 34444444443
No 154
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=53.18 E-value=5.8 Score=22.61 Aligned_cols=32 Identities=22% Similarity=0.560 Sum_probs=20.8
Q ss_pred CCcccccCCcCCCCCceEEe--CCCCcccHHhHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL--LCHHKFHSECLEP 105 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l--pC~H~FH~~Ci~~ 105 (114)
...|.||... ..|.-+.-- .|.-.||..|-..
T Consensus 17 ~l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHH
Confidence 4579999753 124333222 3888999999765
No 155
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.43 E-value=9.5 Score=20.12 Aligned_cols=38 Identities=16% Similarity=0.310 Sum_probs=23.0
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHhCCCC
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQH 112 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~~~~~ 112 (114)
=..|..|...+. +... ...=+..|+..|..+-+....+
T Consensus 33 CF~C~~C~~~L~-~~~~-~~~~~~~yC~~cy~~~~~~~~~ 70 (72)
T 1x61_A 33 CFVCSTCRAQLR-GQHF-YAVERRAYCEGCYVATLESGPS 70 (72)
T ss_dssp TCBCSSSCCBCT-TSCE-EESSSCEEEHHHHHHHHHTCSS
T ss_pred CCcccccCCcCC-cCcC-EeeCCeEECHHHHHHHHccCCC
Confidence 366777777774 2222 2234567888887777765444
No 156
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=51.76 E-value=7.2 Score=20.43 Aligned_cols=30 Identities=27% Similarity=0.666 Sum_probs=18.8
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECL 103 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci 103 (114)
...|.-|-..+..++.+.. .=+..||..|.
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF 40 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF 40 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC
Confidence 4578888888776654332 23556777764
No 157
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.80 E-value=8.8 Score=20.53 Aligned_cols=29 Identities=28% Similarity=0.666 Sum_probs=16.1
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHh
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSEC 102 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~C 102 (114)
...|+-|-+.+..++.+.. .-+..||..|
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C 39 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQC 39 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTT
T ss_pred CCCchhcCCccCCCceEEE-eCccEecccc
Confidence 4567777777765443321 1345666665
No 158
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=50.42 E-value=9.8 Score=20.72 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=19.3
Q ss_pred CCcccccCCcCCCCCceEEeC--CC-CcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGEEVKELL--CH-HKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lp--C~-H~FH~~Ci~ 104 (114)
..-| ||..... ++.+.-=. |. ..||..|+.
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg 48 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG 48 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC
Confidence 4457 8988642 44333224 66 689999996
No 159
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=50.26 E-value=6.6 Score=21.41 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=14.5
Q ss_pred CcccccCCcCCCCCceEEeCCCCcccHHh
Q psy16979 74 AQCVICLAPFQPGEEVKELLCHHKFHSEC 102 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~lpC~H~FH~~C 102 (114)
..|..|-+.+..++.+. .-+..||..|
T Consensus 8 ~~C~~C~~~I~~~~~~~--a~~~~~H~~C 34 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQ--CDGRSFHRCC 34 (81)
T ss_dssp CBCSSSCCBCSSTTEEE--ETTEEEESSS
T ss_pred CcCcCcCccccCceeEE--eCCccccccc
Confidence 45666666665554332 2345556555
No 160
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=50.18 E-value=12 Score=27.28 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=24.0
Q ss_pred CCcccccCCcCCCCCceEEe--CCCCcccHHhHHHHHhC
Q psy16979 73 DAQCVICLAPFQPGEEVKEL--LCHHKFHSECLEPWLRE 109 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l--pC~H~FH~~Ci~~Wl~~ 109 (114)
+.-|.||-+. ++.+..= .|...|+.+||+.++..
T Consensus 93 ~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~ 128 (386)
T 2pv0_B 93 QSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGP 128 (386)
T ss_dssp BCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCT
T ss_pred cccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcCh
Confidence 6778888853 2222222 49999999999998843
No 161
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=50.11 E-value=11 Score=21.36 Aligned_cols=30 Identities=20% Similarity=0.569 Sum_probs=21.8
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECL 103 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci 103 (114)
...|..|...+..++.++. .=+..||..|.
T Consensus 66 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF 95 (101)
T 2cup_A 66 SPKCKGCFKAIVAGDQNVE-YKGTVWHKDCF 95 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEE-SSSCEEETTTC
T ss_pred CCccccCCCccccCCeEEE-eCCcchHHhCC
Confidence 4689999999987654333 34688998874
No 162
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=49.86 E-value=20 Score=19.06 Aligned_cols=34 Identities=29% Similarity=0.623 Sum_probs=28.2
Q ss_pred CCcccccCCcCCCCCceEEeC-CCCcccHH-hHHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKELL-CHHKFHSE-CLEPW 106 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lp-C~H~FH~~-Ci~~W 106 (114)
...|.-|...+..|+....-. .-|.|+.. ||...
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 568999999999999666555 88999876 98875
No 163
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=49.62 E-value=12 Score=28.05 Aligned_cols=31 Identities=19% Similarity=0.606 Sum_probs=21.3
Q ss_pred CcccccCCcCCCCC-ceEEeCCCCcccHHhHH
Q psy16979 74 AQCVICLAPFQPGE-EVKELLCHHKFHSECLE 104 (114)
Q Consensus 74 ~~C~ICl~~~~~~~-~~~~lpC~H~FH~~Ci~ 104 (114)
..-.||...+..+. .+..-.|.--||..|+.
T Consensus 37 ~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvg 68 (488)
T 3kv5_D 37 PVYCVCRQPYDVNRFMIECDICKDWFHGSCVG 68 (488)
T ss_dssp CEETTTTEECCTTSCEEEBTTTCCEEEHHHHT
T ss_pred CeEEeCCCcCCCCCCeEEccCCCCceeeeecC
Confidence 33449998875444 44433599999999984
No 164
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=47.80 E-value=0.84 Score=19.55 Aligned_cols=12 Identities=42% Similarity=1.024 Sum_probs=8.9
Q ss_pred cccHHhHHHHHh
Q psy16979 97 KFHSECLEPWLR 108 (114)
Q Consensus 97 ~FH~~Ci~~Wl~ 108 (114)
.|+..|-++||-
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 477888888873
No 165
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=46.98 E-value=37 Score=19.12 Aligned_cols=34 Identities=24% Similarity=0.557 Sum_probs=25.9
Q ss_pred CCcccccCCcCCCC---CceEEeCCCCcccHHhHHHH
Q psy16979 73 DAQCVICLAPFQPG---EEVKELLCHHKFHSECLEPW 106 (114)
Q Consensus 73 ~~~C~ICl~~~~~~---~~~~~lpC~H~FH~~Ci~~W 106 (114)
...|.+|.+..... ...+-+-|.-..|.+|+...
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~ 74 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL 74 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc
Confidence 56899999885432 24566679999999998874
No 166
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=46.75 E-value=8.6 Score=22.90 Aligned_cols=35 Identities=14% Similarity=0.345 Sum_probs=21.1
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHHh
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR 108 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl~ 108 (114)
=..|..|-..+..++.... .=+..|+..|..+.+.
T Consensus 36 CF~C~~C~~~L~~g~~f~~-~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYLL-INSDIVCEQDIYEWTK 70 (123)
T ss_dssp TCBCTTTCCBCCTTCEEEE-CSSSEEEGGGHHHHHH
T ss_pred cCccccCCCCCCCCCcEEe-eCCEEEcHHHhHHHhc
Confidence 4667777777755543322 2356677777766653
No 167
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.54 E-value=14 Score=19.49 Aligned_cols=10 Identities=30% Similarity=0.826 Sum_probs=4.6
Q ss_pred cccccCCcCC
Q psy16979 75 QCVICLAPFQ 84 (114)
Q Consensus 75 ~C~ICl~~~~ 84 (114)
.|.-|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x4l_A 7 GCAGCTNPIS 16 (72)
T ss_dssp SBTTTTBCCC
T ss_pred CCcCCCcccc
Confidence 3444444444
No 168
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=46.24 E-value=20 Score=21.23 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=18.8
Q ss_pred CCcccccCCcCCCCCceEEeCCCCccc
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFH 99 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH 99 (114)
...|..|... ++...-|.|+|+++
T Consensus 24 ~~~C~~C~~~---~~~W~CL~CG~vgC 47 (109)
T 3c5k_A 24 TQPCGDCGTI---QENWVCLSCYQVYC 47 (109)
T ss_dssp TCCCTTTCCC---SSEEEETTTCCEEE
T ss_pred CCcCccccCC---CCeeeeeecCcccc
Confidence 4579999865 44677889999985
No 169
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.97 E-value=12 Score=19.98 Aligned_cols=28 Identities=32% Similarity=0.742 Sum_probs=14.0
Q ss_pred CcccccCCcCCC--CCceEEeCCCCcccHHh
Q psy16979 74 AQCVICLAPFQP--GEEVKELLCHHKFHSEC 102 (114)
Q Consensus 74 ~~C~ICl~~~~~--~~~~~~lpC~H~FH~~C 102 (114)
..|+.|-+.+.. +..+ +..-+..||.+|
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~C 35 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-ICFQDSQWHSEC 35 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EEETTEEEEGGG
T ss_pred CCCccCCCcccCCCCcee-EEECCcccCccc
Confidence 456666666653 2221 222345666665
No 170
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.73 E-value=12 Score=20.79 Aligned_cols=27 Identities=33% Similarity=0.675 Sum_probs=14.5
Q ss_pred CcccccCCcCCCCCceEEeCCCCcccHHh
Q psy16979 74 AQCVICLAPFQPGEEVKELLCHHKFHSEC 102 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~lpC~H~FH~~C 102 (114)
..|.-|-+.+...+.+ ..-+..||..|
T Consensus 16 ~~C~~C~~~I~~~~~v--~a~~~~~H~~C 42 (91)
T 2d8y_A 16 ETCVECQKTVYPMERL--LANQQVFHISC 42 (91)
T ss_dssp CBCTTTCCBCCTTSEE--ECSSSEEETTT
T ss_pred CcCccCCCccCCceeE--EECCCEECCCC
Confidence 4566666666554432 23445566555
No 171
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=43.68 E-value=8.1 Score=23.95 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=19.0
Q ss_pred CCcccccCCcCCCCC-ceEEeC-CCCccc
Q psy16979 73 DAQCVICLAPFQPGE-EVKELL-CHHKFH 99 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~-~~~~lp-C~H~FH 99 (114)
-..||-|-.+|.-.+ ...+.| |+|.+-
T Consensus 27 lP~CP~C~seytYeDg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGALLVCPECAHEWS 55 (138)
T ss_dssp SCCCTTTCCCCCEECSSSEEETTTTEEEC
T ss_pred CCCCCCCCCcceEecCCeEECCccccccC
Confidence 357999999976433 345667 999874
No 172
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=43.28 E-value=6.7 Score=20.56 Aligned_cols=29 Identities=28% Similarity=0.559 Sum_probs=18.7
Q ss_pred CcccccCCcCCCCCceEEeC--CC-CcccHHhHH
Q psy16979 74 AQCVICLAPFQPGEEVKELL--CH-HKFHSECLE 104 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~lp--C~-H~FH~~Ci~ 104 (114)
.-| ||.... .|+.+.-=. |. ..||..|+.
T Consensus 10 ~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg 41 (59)
T 3c6w_A 10 TYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD 41 (59)
T ss_dssp EET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT
T ss_pred cEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC
Confidence 345 998864 343333224 66 699999986
No 173
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.94 E-value=15 Score=20.39 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=16.3
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECL 103 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci 103 (114)
...|.-|-+.+. ++.+. .-+..||..|.
T Consensus 25 ~~~C~~C~~~I~-~~~v~--a~~~~~H~~CF 52 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPFLV--ALGKSWHPEEF 52 (90)
T ss_dssp CCBBSSSCCBCC-SCEEE--ETTEEECTTTC
T ss_pred CCCCccCCCEec-ceEEE--ECCccccccCC
Confidence 556888877774 33222 34566776663
No 174
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=42.07 E-value=7.2 Score=20.47 Aligned_cols=29 Identities=28% Similarity=0.529 Sum_probs=17.7
Q ss_pred CcccccCCcCCCCCceEEeC--CC-CcccHHhHH
Q psy16979 74 AQCVICLAPFQPGEEVKELL--CH-HKFHSECLE 104 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~lp--C~-H~FH~~Ci~ 104 (114)
.-| ||.... .|+.+.-=. |. ..||..|+.
T Consensus 11 ~~C-~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg 42 (60)
T 2vnf_A 11 TYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG 42 (60)
T ss_dssp EET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT
T ss_pred CEE-ECCCcC-CCCEEEeCCCCCCCceEehhcCC
Confidence 345 998764 243222223 55 689999986
No 175
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=41.80 E-value=19 Score=21.29 Aligned_cols=28 Identities=21% Similarity=0.384 Sum_probs=13.4
Q ss_pred CcccccCCcCCCCCceEEeCCCCcccHHhH
Q psy16979 74 AQCVICLAPFQPGEEVKELLCHHKFHSECL 103 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci 103 (114)
..|+-|-+.+.....+.. -+..||..|.
T Consensus 6 ~~C~~C~~~I~~~~~~~a--~~~~wH~~CF 33 (122)
T 1m3v_A 6 KRCAGCGGKIADRFLLYA--MDSYWHSRCL 33 (122)
T ss_dssp CCBSSSSSCCCSSCCEEE--TTEEECHHHH
T ss_pred CCCcccCCEeCCcEEEEE--CCceeHhhCC
Confidence 456666665554432222 2445555553
No 176
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.07 E-value=14 Score=19.36 Aligned_cols=32 Identities=9% Similarity=0.076 Sum_probs=15.8
Q ss_pred CcccccCCcCCCCCceEEeCCCCcccHHhHHHHH
Q psy16979 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPWL 107 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl 107 (114)
..|..|...+..+.- ...=+..|+..|..+-+
T Consensus 32 F~C~~C~~~L~~~~f--~~~~g~~yC~~c~~~~~ 63 (70)
T 2d8x_A 32 FRCDLCQEVLADIGF--VKNAGRHLCRPCHNREK 63 (70)
T ss_dssp SBCSSSCCBCSSSCC--EEETTEEECHHHHHHHH
T ss_pred CEeCCCCCcCCCCcc--EeECCeEECHHHhhhhc
Confidence 556666665554421 11234456666655443
No 177
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=40.81 E-value=7 Score=20.31 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=4.4
Q ss_pred cccccCCcCC
Q psy16979 75 QCVICLAPFQ 84 (114)
Q Consensus 75 ~C~ICl~~~~ 84 (114)
.|+.|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (66)
T 1nyp_A 7 ICGACRRPIE 16 (66)
T ss_dssp EETTTTEECC
T ss_pred CCcccCCEec
Confidence 3444444443
No 178
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=39.59 E-value=12 Score=19.77 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=21.3
Q ss_pred CcccccCCcCCCCCceEEeC-CCCcccHHhH
Q psy16979 74 AQCVICLAPFQPGEEVKELL-CHHKFHSECL 103 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~lp-C~H~FH~~Ci 103 (114)
..|--|...|.+. .+.+-| |++.|+.+|=
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD 45 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCD 45 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHH
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchh
Confidence 3699999998543 234455 9999999983
No 179
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=38.73 E-value=30 Score=19.05 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=17.7
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECL 103 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci 103 (114)
...|.-|-+.+.. .. +..-+..||..|.
T Consensus 25 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF 52 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AV--VKARDKYRHPECF 52 (89)
T ss_dssp CCBCTTTCCBCCS-CC--EESSSCEECTTTC
T ss_pred CCCcccCCCEecc-cE--EEECCceECccCC
Confidence 4578888888764 22 2235577777774
No 180
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=38.72 E-value=18 Score=19.68 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=14.4
Q ss_pred CcccccCCcCCCCC--ceEEeC-CCCcc
Q psy16979 74 AQCVICLAPFQPGE--EVKELL-CHHKF 98 (114)
Q Consensus 74 ~~C~ICl~~~~~~~--~~~~lp-C~H~F 98 (114)
-.|++|...+.... ...+.+ |+..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 46888888765322 223333 76655
No 181
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.87 E-value=16 Score=19.80 Aligned_cols=10 Identities=20% Similarity=0.584 Sum_probs=5.2
Q ss_pred cccccCCcCC
Q psy16979 75 QCVICLAPFQ 84 (114)
Q Consensus 75 ~C~ICl~~~~ 84 (114)
.|+.|-+.+.
T Consensus 17 ~C~~C~~~I~ 26 (81)
T 1v6g_A 17 RCFSCDQFIE 26 (81)
T ss_dssp BCTTTCCBCC
T ss_pred cCccccCEec
Confidence 4555555544
No 182
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.63 E-value=3.2 Score=21.99 Aligned_cols=36 Identities=22% Similarity=0.623 Sum_probs=26.3
Q ss_pred CcccccCCcCCCCCceEEe--C---CCCcccHHhHHHHHhC
Q psy16979 74 AQCVICLAPFQPGEEVKEL--L---CHHKFHSECLEPWLRE 109 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~l--p---C~H~FH~~Ci~~Wl~~ 109 (114)
..|+-|.-.++..+....+ . |++.|+..|..+|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4688888888876643333 2 7899999999988643
No 183
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.53 E-value=18 Score=18.75 Aligned_cols=33 Identities=12% Similarity=0.322 Sum_probs=16.9
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWL 107 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl 107 (114)
=..|..|...+.... ....=+..|+..|..+.+
T Consensus 31 CF~C~~C~~~L~~~~--~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 31 CFVCVTCSKKLAGQR--FTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTBCTTTCCBCTTSC--EEECSSCEEEHHHHHHHH
T ss_pred cCEECCCCCCCCCCc--cEeECCEEECHHHhHHHh
Confidence 355666666654221 112234566666665544
No 184
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.39 E-value=25 Score=18.20 Aligned_cols=31 Identities=10% Similarity=0.180 Sum_probs=14.2
Q ss_pred CcccccCCcCCCCCceEEeCCCCcccHHhHHHH
Q psy16979 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEPW 106 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~W 106 (114)
..|..|...+..+.- ...=+..|+..|..+-
T Consensus 32 F~C~~C~~~L~~~~~--~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 32 FVCTACRKQLSGQRF--TARDDFAYCLNCFCDL 62 (70)
T ss_dssp SBCSSSCCBCTTSCC--EESSSSEECHHHHHHH
T ss_pred CccCCCCCcCCcCce--EeeCCeEECHHHHHHH
Confidence 456666665543211 1122345555555443
No 185
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=34.95 E-value=11 Score=19.92 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=18.3
Q ss_pred CcccccCCcCCCCCceEEeC--CC-CcccHHhHH
Q psy16979 74 AQCVICLAPFQPGEEVKELL--CH-HKFHSECLE 104 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~lp--C~-H~FH~~Ci~ 104 (114)
.-| ||.... .|+.+.-=. |. ..||..|+.
T Consensus 12 ~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg 43 (62)
T 2g6q_A 12 TYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS 43 (62)
T ss_dssp EET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT
T ss_pred cEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC
Confidence 345 998863 343332224 55 899999986
No 186
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.75 E-value=15 Score=19.88 Aligned_cols=11 Identities=18% Similarity=0.467 Sum_probs=5.0
Q ss_pred CcccccCCcCC
Q psy16979 74 AQCVICLAPFQ 84 (114)
Q Consensus 74 ~~C~ICl~~~~ 84 (114)
..|..|...+.
T Consensus 42 F~C~~C~~~L~ 52 (79)
T 2cor_A 42 FNCANCGKELT 52 (79)
T ss_dssp SBCSSSCCBCC
T ss_pred CEeCCCCCccC
Confidence 34444444443
No 187
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.26 E-value=21 Score=19.26 Aligned_cols=10 Identities=20% Similarity=0.544 Sum_probs=5.4
Q ss_pred cccccCCcCC
Q psy16979 75 QCVICLAPFQ 84 (114)
Q Consensus 75 ~C~ICl~~~~ 84 (114)
.|+.|-..+.
T Consensus 17 ~C~~C~~~I~ 26 (82)
T 2ehe_A 17 TCAECQQLIG 26 (82)
T ss_dssp BCTTTCCBCC
T ss_pred cCccCCCccc
Confidence 4555555554
No 188
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.93 E-value=21 Score=19.16 Aligned_cols=28 Identities=21% Similarity=0.212 Sum_probs=18.1
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECL 103 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci 103 (114)
...|.-|-+.+.. .. +..-+..||..|.
T Consensus 15 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~CF 42 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VF--VKLRDRHRHPECY 42 (79)
T ss_dssp CCCCSSSCCCCCS-SC--EECSSCEECTTTT
T ss_pred CCccccCCCCccC-cE--EEECcceeCcCcC
Confidence 4578888888764 22 2334677887774
No 189
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=33.61 E-value=27 Score=18.50 Aligned_cols=29 Identities=24% Similarity=0.542 Sum_probs=15.6
Q ss_pred CCcccccCCcCCC---CCceEEeCCCCcccHHh
Q psy16979 73 DAQCVICLAPFQP---GEEVKELLCHHKFHSEC 102 (114)
Q Consensus 73 ~~~C~ICl~~~~~---~~~~~~lpC~H~FH~~C 102 (114)
...|+-|-..+.. +..+ +..=+..||..|
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~-~~a~~~~~H~~C 46 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSV-VAYEGQSWHDYC 46 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCE-EEETTEEEETTT
T ss_pred CccCcccCCcccCCCCCcee-EEECcceeCccc
Confidence 3467777777764 2221 122355677666
No 190
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=33.23 E-value=19 Score=21.48 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=20.1
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECL 103 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci 103 (114)
...|.-|-..+.....+. .-+..||..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~CF 89 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--AMDSYWHSRCL 89 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--ETTEEEETTTS
T ss_pred CCcCcCCCCCcCCcEEEE--eCCcEEccccc
Confidence 568999999887553233 35678888774
No 191
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=31.94 E-value=35 Score=24.34 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=23.8
Q ss_pred CCcccccCCcCC-CCCc-eEEeCCCCcccHHhHHH
Q psy16979 73 DAQCVICLAPFQ-PGEE-VKELLCHHKFHSECLEP 105 (114)
Q Consensus 73 ~~~C~ICl~~~~-~~~~-~~~lpC~H~FH~~Ci~~ 105 (114)
...|.+|...+. .... ...-.|+..+|..|...
T Consensus 357 ~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 357 TTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 568999999884 3333 33335999999999753
No 192
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=31.01 E-value=12 Score=22.00 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=18.6
Q ss_pred cccccCCcCCCCCceEEeC-CCCcccHHhHHH
Q psy16979 75 QCVICLAPFQPGEEVKELL-CHHKFHSECLEP 105 (114)
Q Consensus 75 ~C~ICl~~~~~~~~~~~lp-C~H~FH~~Ci~~ 105 (114)
.|..|......+..+..-. |...||..|+..
T Consensus 61 ~c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~ 92 (117)
T 4bbq_A 61 EVDQNEETQDFEKKLMECCICNEIVHPGCLQM 92 (117)
T ss_dssp CBCCHHHHCCGGGSCEEETTTCCEECGGGCCS
T ss_pred cccccccccccCcceEEeeecCCeEECCCCCC
Confidence 3444444443344444444 999999999753
No 193
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=30.97 E-value=29 Score=20.36 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=6.0
Q ss_pred CcccccCCcCC
Q psy16979 74 AQCVICLAPFQ 84 (114)
Q Consensus 74 ~~C~ICl~~~~ 84 (114)
..|..|...+.
T Consensus 31 F~C~~C~~~L~ 41 (126)
T 2xqn_T 31 FCCFDCDSILA 41 (126)
T ss_dssp SBCTTTCCBCT
T ss_pred CCcCCCCCCCC
Confidence 45555655554
No 194
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=30.56 E-value=41 Score=19.28 Aligned_cols=25 Identities=16% Similarity=0.042 Sum_probs=18.3
Q ss_pred CCcccccCCcCCCCCceEEeC--CCCccc
Q psy16979 73 DAQCVICLAPFQPGEEVKELL--CHHKFH 99 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lp--C~H~FH 99 (114)
...|..|... ......-|. |+|+++
T Consensus 25 ~~~C~~C~~~--~~~lw~CL~~~Cg~vgC 51 (97)
T 2uzg_A 25 LGTCQDCKVQ--GPNLWACLENRCSYVGC 51 (97)
T ss_dssp TTCCSSSCCC--CSSCEEECCTTCCCEEC
T ss_pred CCcCcCcCCC--CCCceeeecccCCCccc
Confidence 4579999844 233478888 999987
No 195
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=29.64 E-value=20 Score=20.52 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=18.2
Q ss_pred CCcccccCCcCCCCCceEEeCCC---CcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCH---HKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~---H~FH~~Ci~ 104 (114)
..-| ||.... .|+.|.-=.|. -.||..|+.
T Consensus 26 ~~yC-iC~~~~-~g~MI~CD~c~C~~eWfH~~CVg 58 (90)
T 2jmi_A 26 EVYC-FCRNVS-YGPMVACDNPACPFEWFHYGCVG 58 (90)
T ss_dssp SCCS-TTTCCC-SSSEECCCSSSCSCSCEETTTSS
T ss_pred CcEE-EeCCCC-CCCEEEecCCCCccccCcCccCC
Confidence 4456 998753 24433222454 689999985
No 196
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.99 E-value=57 Score=17.48 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=18.0
Q ss_pred CcccccCCcCCCCCceEEeCCC---CcccHHhHH
Q psy16979 74 AQCVICLAPFQPGEEVKELLCH---HKFHSECLE 104 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~lpC~---H~FH~~Ci~ 104 (114)
.-| ||... ..|..+.--.|. .-||..|+.
T Consensus 7 ~yC-~C~~~-~~g~MI~CD~cdC~~~WfH~~Cvg 38 (70)
T 1x4i_A 7 GYC-ICNQV-SYGEMVGCDNQDCPIEWFHYGCVG 38 (70)
T ss_dssp CCS-TTSCC-CCSSEECCSCTTCSCCCEEHHHHT
T ss_pred eEE-EcCCC-CCCCEeEeCCCCCCccCCcccccc
Confidence 345 68776 344444433453 789999986
No 197
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=28.93 E-value=19 Score=19.47 Aligned_cols=26 Identities=12% Similarity=0.027 Sum_probs=14.4
Q ss_pred CCcccccCCcCCCCC--ceEEeC-CCCcc
Q psy16979 73 DAQCVICLAPFQPGE--EVKELL-CHHKF 98 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~--~~~~lp-C~H~F 98 (114)
--.|++|...+.... ...+.+ |++.|
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 347888888765322 122233 66655
No 198
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.93 E-value=34 Score=18.22 Aligned_cols=30 Identities=13% Similarity=0.346 Sum_probs=13.0
Q ss_pred CcccccCCcCCCCCceEEeCCCCcccHHhHHH
Q psy16979 74 AQCVICLAPFQPGEEVKELLCHHKFHSECLEP 105 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~ 105 (114)
..|..|...+..+ .. ...=+..|+..|..+
T Consensus 42 F~C~~C~~~L~~~-~~-~~~~~~~yC~~cy~~ 71 (80)
T 2cuq_A 42 LVCTGCQTPLAGQ-QF-TSRDEDPYCVACFGE 71 (80)
T ss_dssp CBCSSSCCBCTTC-CE-EECSSSEEEHHHHHH
T ss_pred CCcccCCCcCCCC-ee-EeECCEEECHHHHHH
Confidence 4455555555322 11 112334555555544
No 199
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=26.65 E-value=18 Score=23.19 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=17.3
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHh
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSEC 102 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~C 102 (114)
...|+.|-..+..++.+.. =+..||.+|
T Consensus 115 ~~~C~~C~~~I~~~~~v~a--~~~~~H~~C 142 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG--AGKSWHKSC 142 (192)
T ss_dssp CEECTTTSCEECSSSCEEE--TTEEECTTT
T ss_pred CCcCCCCCCEecCcEEEec--CCCccchhc
Confidence 3458888887766554432 355666665
No 200
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=26.49 E-value=22 Score=19.21 Aligned_cols=26 Identities=4% Similarity=-0.033 Sum_probs=14.8
Q ss_pred CCcccccCCcCCCCC--ceEEeC-CCCcc
Q psy16979 73 DAQCVICLAPFQPGE--EVKELL-CHHKF 98 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~--~~~~lp-C~H~F 98 (114)
--.|++|...+.... ...+.+ |+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 357999988765322 222333 76655
No 201
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.41 E-value=32 Score=18.47 Aligned_cols=11 Identities=27% Similarity=0.788 Sum_probs=5.7
Q ss_pred CcccccCCcCC
Q psy16979 74 AQCVICLAPFQ 84 (114)
Q Consensus 74 ~~C~ICl~~~~ 84 (114)
..|..|...+.
T Consensus 42 F~C~~C~~~L~ 52 (81)
T 2dlo_A 42 FTCVVCHRGLD 52 (81)
T ss_dssp CBCSSSCCBCT
T ss_pred cCcccCCCccC
Confidence 44555555543
No 202
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.23 E-value=35 Score=18.04 Aligned_cols=34 Identities=32% Similarity=0.468 Sum_probs=19.6
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHHHHH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWL 107 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~~Wl 107 (114)
=..|..|...+..+.... ..=+..|+..|-..-.
T Consensus 31 CF~C~~C~~~L~~~~~f~-~~~~~~yC~~C~~~~~ 64 (73)
T 1wig_A 31 CALCVRCGQMFAEGEEMY-LQGSSIWHPACRQAAR 64 (73)
T ss_dssp TSCCSSSCCCCCSSCCCE-EETTEEECTTHHHHTS
T ss_pred cCEeCCCCCCCCCCCeeE-eeCCEEEChHHChHhh
Confidence 467888887776444322 1234567777766543
No 203
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=25.79 E-value=23 Score=19.14 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=14.1
Q ss_pred CcccccCCcCCCCC--ceEEeC-CCCcc
Q psy16979 74 AQCVICLAPFQPGE--EVKELL-CHHKF 98 (114)
Q Consensus 74 ~~C~ICl~~~~~~~--~~~~lp-C~H~F 98 (114)
-.|++|...+.... ...+.+ |+..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 46888888765322 222333 76655
No 204
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=25.59 E-value=41 Score=24.97 Aligned_cols=31 Identities=23% Similarity=0.608 Sum_probs=21.9
Q ss_pred CcccccCCcCCCCCceEEe-CCCCcccHHhHH
Q psy16979 74 AQCVICLAPFQPGEEVKEL-LCHHKFHSECLE 104 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~ 104 (114)
....||...+..+...+.. .|.--||..|+.
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVg 36 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVG 36 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHT
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCC
Confidence 4566999887544433444 599999999984
No 205
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.55 E-value=28 Score=19.40 Aligned_cols=30 Identities=20% Similarity=0.569 Sum_probs=22.0
Q ss_pred CCcccccCCcCCC-CCceEEeC-CCCcccHHh
Q psy16979 73 DAQCVICLAPFQP-GEEVKELL-CHHKFHSEC 102 (114)
Q Consensus 73 ~~~C~ICl~~~~~-~~~~~~lp-C~H~FH~~C 102 (114)
+..|+.|.+.|.. .+....-+ |.|..+.+|
T Consensus 25 ~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 25 DRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp CCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred ccchhhhCccccccccCCCcCcccChhhcccc
Confidence 6789999999863 23334444 999888877
No 206
>2roo_A Neurotoxin MAGI-4; spider, sodium channel inhibitor, cleavage on PAIR of basic residues, ionic channel inhibitor, knottin, secreted; NMR {Synthetic}
Probab=24.78 E-value=1.5 Score=21.40 Aligned_cols=13 Identities=23% Similarity=1.050 Sum_probs=9.6
Q ss_pred HhHHHHHhCCCCC
Q psy16979 101 ECLEPWLRERQHC 113 (114)
Q Consensus 101 ~Ci~~Wl~~~~~C 113 (114)
+||.-|..++.+|
T Consensus 19 kCiyAWYnqq~sC 31 (43)
T 2roo_A 19 NCVYAWYNQQSSC 31 (43)
T ss_dssp EEEECGGGSSEEE
T ss_pred HHHHHHHccCCch
Confidence 4788888877665
No 207
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=24.67 E-value=68 Score=18.01 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=22.2
Q ss_pred CCcccccCCcCCCCCceEEeCCCCcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~lpC~H~FH~~Ci~ 104 (114)
...|.+|.+.. .+-..+-..|+-.+|..|+.
T Consensus 47 ~~~C~~C~~~~-~~~~Y~C~~C~f~lH~~Ca~ 77 (89)
T 1v5n_A 47 VYTCDKCEEEG-TIWSYHCDECDFDLHAKCAL 77 (89)
T ss_dssp SCCCTTTSCCC-CSCEEECTTTCCCCCHHHHH
T ss_pred CeEeCCCCCcC-CCcEEEcCCCCCeEcHHhcC
Confidence 35799999884 33333334599999999974
No 208
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=23.75 E-value=23 Score=15.75 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=8.7
Q ss_pred CCcccccCCcCC
Q psy16979 73 DAQCVICLAPFQ 84 (114)
Q Consensus 73 ~~~C~ICl~~~~ 84 (114)
...|+||+...-
T Consensus 3 k~~CpvCk~q~P 14 (28)
T 2jvx_A 3 DFCCPKCQYQAP 14 (28)
T ss_dssp CEECTTSSCEES
T ss_pred cccCccccccCc
Confidence 357999997643
No 209
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=23.59 E-value=29 Score=17.83 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=5.2
Q ss_pred cccccCCcCCC
Q psy16979 75 QCVICLAPFQP 85 (114)
Q Consensus 75 ~C~ICl~~~~~ 85 (114)
.|+-|-+.+..
T Consensus 4 ~C~~C~~~I~~ 14 (65)
T 2iyb_E 4 VCQGCHNAIDP 14 (65)
T ss_dssp ECTTTSSEECT
T ss_pred CCcCCCCeecc
Confidence 34555555443
No 210
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.54 E-value=38 Score=18.00 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=5.7
Q ss_pred CcccccCCcCCC
Q psy16979 74 AQCVICLAPFQP 85 (114)
Q Consensus 74 ~~C~ICl~~~~~ 85 (114)
..|..|...+..
T Consensus 42 F~C~~C~~~L~~ 53 (80)
T 1x3h_A 42 FVCGDCFTSFST 53 (80)
T ss_dssp CBCSSSCCBSCS
T ss_pred CChhhCCCCCCC
Confidence 445555544443
No 211
>1qdp_A Robustoxin; neurotoxin, cystine knot, inhibitor cystine knot motif, sodium channel modulator, funnel WEB spider, venom; NMR {Atrax robustus} SCOP: g.3.6.2 PDB: 1vtx_A
Probab=22.35 E-value=1.6 Score=21.19 Aligned_cols=13 Identities=23% Similarity=1.053 Sum_probs=9.1
Q ss_pred HhHHHHHhCCCCC
Q psy16979 101 ECLEPWLRERQHC 113 (114)
Q Consensus 101 ~Ci~~Wl~~~~~C 113 (114)
+||.-|..++.+|
T Consensus 19 kCiyAWYnqq~sC 31 (42)
T 1qdp_A 19 KCIYAWYNQQGSC 31 (42)
T ss_dssp EEECCSSCSCCEE
T ss_pred HHHHHHHccCCch
Confidence 3777787776665
No 212
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=21.89 E-value=58 Score=16.97 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=23.9
Q ss_pred CCcccccCCcCCCCCceEEe-CCCCcccHHhHH
Q psy16979 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLE 104 (114)
Q Consensus 73 ~~~C~ICl~~~~~~~~~~~l-pC~H~FH~~Ci~ 104 (114)
...|.+|-+.+..|....+- .|+-.-|.+|-+
T Consensus 19 ~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~~C~~ 51 (61)
T 4b6d_A 19 PESCVPCGKRIKFGKLSLKCRDCRVVSHPECRD 51 (61)
T ss_dssp CEECTTTCCEECTTCEEEEESSSSCEECGGGGG
T ss_pred CcccccccCEEEEeeEeeECCCCCCeEchhHhh
Confidence 46899998888766544444 599999999953
No 213
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.97 E-value=35 Score=19.79 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=16.9
Q ss_pred CCcccccCCcCCC-CCceEEeCCCCcccHHhHHHHHh
Q psy16979 73 DAQCVICLAPFQP-GEEVKELLCHHKFHSECLEPWLR 108 (114)
Q Consensus 73 ~~~C~ICl~~~~~-~~~~~~lpC~H~FH~~Ci~~Wl~ 108 (114)
=..|..|...+.. |.... ..=+..|+..|..+=+.
T Consensus 30 CF~C~~C~~~L~~~g~~~~-~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 30 CLSCDLCGCRLGEVGRRLY-YKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp TCCCSSSCSCCCCSSSCCC-CBTTBCCCHHHHHHHHT
T ss_pred cCcccccCCchhcCCCeeE-EECCeeechHHHHHHhC
Confidence 4567777766653 22111 11234566666555443
No 214
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=20.46 E-value=45 Score=21.20 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=12.5
Q ss_pred CcccccCCcCCCCCceEEeCCCCcccHHh
Q psy16979 74 AQCVICLAPFQPGEEVKELLCHHKFHSEC 102 (114)
Q Consensus 74 ~~C~ICl~~~~~~~~~~~lpC~H~FH~~C 102 (114)
..|.-|-..+.....+.. -+..||..|
T Consensus 6 ~~C~~C~~~I~~~~~~~a--~~~~wH~~C 32 (188)
T 1rut_X 6 KRCAGCGGKIADRFLLYA--MDSYWHSRC 32 (188)
T ss_dssp CBBTTTCCBCCCSEEEEE--TTEEECGGG
T ss_pred CcCccCCCEeCCceeEEe--cCcEecccC
Confidence 456666666553211111 244555554
No 215
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=20.25 E-value=56 Score=18.24 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=10.0
Q ss_pred CCCCceEEeC-CCCccc
Q psy16979 84 QPGEEVKELL-CHHKFH 99 (114)
Q Consensus 84 ~~~~~~~~lp-C~H~FH 99 (114)
+.| +..+.| |+|.|-
T Consensus 52 ~~g-~~~RC~eCG~~fk 67 (80)
T 2odx_A 52 TVN-EVARCWECGSVYK 67 (80)
T ss_dssp CTT-CEEECSSSCCEEE
T ss_pred cCC-CCeECCCCCeEEE
Confidence 344 566675 999884
Done!