RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16979
(114 letters)
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 66.2 bits (162), Expect = 4e-16
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 60 QIPSIAFPADEAP--DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
Q+PS F + CV+C+ F+ + ++ L C+H+FH++C++ WL+ + CP
Sbjct: 8 QLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCP 64
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn
binding domain, metal zinc, zinc-finger, metal binding
protein; NMR {Homo sapiens}
Length = 69
Score = 65.5 bits (160), Expect = 7e-16
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 68 ADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+E + +C ICL+ + GE+V+ L C H FH C++ WL + CP
Sbjct: 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCP 55
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 65.4 bits (160), Expect = 1e-15
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 61 IPSIAFPADEAP---DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+P I D + C IC + + G+ EL CHH FH C+ WL++ CP
Sbjct: 25 LPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCP 81
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 64.8 bits (158), Expect = 1e-15
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 69 DEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+ C +CL F+P +E+ C H FH +CL WL R+ CP
Sbjct: 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCP 56
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 65.1 bits (159), Expect = 1e-15
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+C +C + GE V++L C+H FH C+ PWL + CP
Sbjct: 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCP 56
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 59.1 bits (144), Expect = 1e-13
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 73 DAQCVICLAPFQPGEEVKEL-LCHHKFHSECLEPWLRERQHCP 114
+C +CLA + GEE + L C H FH+EC++ WL CP
Sbjct: 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCP 47
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 53.4 bits (129), Expect = 2e-11
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 73 DAQCVICLAPFQPGEE-VKELLCHHKFHSECLEPWLRERQHCP 114
+ C ICL L C H H C E L+E CP
Sbjct: 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCP 47
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 50.7 bits (121), Expect = 4e-10
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 59 GQIPSIAFPADEAPDAQCVICLAPF----QPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
G S + C IC+ + Q G + C H F S+CL L+ CP
Sbjct: 1 GSSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 60
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 50.7 bits (121), Expect = 6e-10
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 73 DAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRERQHCP 114
C+ C A + + V C+H FH+ C+ W+++ CP
Sbjct: 26 MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCP 68
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 49.7 bits (119), Expect = 9e-10
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+ +C IC+ G L C H F +C++ W ++CP
Sbjct: 15 EEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCP 52
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 49.7 bits (119), Expect = 1e-09
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 71 APDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+C ICL L C H F C+ W+R+ CP
Sbjct: 3 TVAERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCP 44
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 47.1 bits (112), Expect = 1e-08
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 68 ADEAPDAQCVICLAPF----QPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+ C IC+ + Q G + C H F S+CL L+ CP
Sbjct: 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 55
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 45.1 bits (107), Expect = 6e-08
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 75 QCVICLAPF----QPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
C IC+ + Q G + C H F S+CL L+ CP
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 48
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 42.1 bits (99), Expect = 1e-06
Identities = 12/46 (26%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 69 DEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+E +C IC FQ C H F C R C
Sbjct: 11 EEEIPFRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCY 53
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 43.3 bits (101), Expect = 3e-06
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 51 APFSTRRFGQIPSIAFPADEAPDAQCVICLAPFQPGEEVKELL-----CHHKFHSECLEP 105
F + P + +E + +C IC A G EV + C K H+ CLE
Sbjct: 288 CYFPMPDWSDGPKLDEEDNE--ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEE 345
Query: 106 WLR 108
W +
Sbjct: 346 WFK 348
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 40.1 bits (94), Expect = 6e-06
Identities = 10/43 (23%), Positives = 12/43 (27%), Gaps = 2/43 (4%)
Query: 72 PDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
P C IC + C H F C+ CP
Sbjct: 14 PYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCP 54
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 40.6 bits (94), Expect = 1e-05
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 63 SIAFPADEAPDAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRERQHCP 114
+I +C A E C+H FH C+ WL+ RQ CP
Sbjct: 41 AICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 93
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 39.4 bits (91), Expect = 2e-05
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 17/94 (18%)
Query: 38 DALSLDSELSPPRAPFSTRRFG--QIPSIAFPADEAPDAQCVICLAPFQPGEEVKE---- 91
+ L + +RF + ++A A + C IC +
Sbjct: 11 ENLYFQGGGRGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQA 70
Query: 92 -----------LLCHHKFHSECLEPWLRERQHCP 114
+C+H FH C+ WL+ RQ CP
Sbjct: 71 SATSEECTVAWGVCNHAFHFHCISRWLKTRQVCP 104
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 39.4 bits (91), Expect = 3e-05
Identities = 12/59 (20%), Positives = 16/59 (27%), Gaps = 15/59 (25%)
Query: 71 APDAQCVICLAPF---------------QPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
AP+ C+IC+ P + C H FH CL
Sbjct: 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDG 81
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 39.0 bits (91), Expect = 3e-05
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 72 PDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
P CV+C F + + C H F C+ +L ++CP
Sbjct: 14 PHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCP 54
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 37.6 bits (87), Expect = 5e-05
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ--HCP 114
C IC + G+ + C + H C+ + + CP
Sbjct: 17 ICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNAEPRCP 56
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 36.7 bits (85), Expect = 1e-04
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 68 ADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
A +C ICL L C H F C++ + C
Sbjct: 10 APSLTVPECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKRCA 53
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 37.2 bits (86), Expect = 1e-04
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE-RQHCP 114
+C IC+ + + C C+ WL E R CP
Sbjct: 24 RCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCP 62
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 37.7 bits (87), Expect = 1e-04
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+ QC+IC F E L C H F S C+ W++ + CP
Sbjct: 64 ELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECP 102
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 37.8 bits (87), Expect = 1e-04
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 68 ADEAPDAQCVICLAPFQPGEEVKE----LLCHHKFHSECLEPWLRERQHCP 114
A + C IC+ + + C H F S+CL L+ CP
Sbjct: 2 AMGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 52
Score = 31.7 bits (71), Expect = 0.026
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 72 PDAQCVICLAPF----QPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
C IC+ + Q G + C H F S+CL L+ CP
Sbjct: 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCP 117
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 36.0 bits (83), Expect = 4e-04
Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 66 FPADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER-QHCP 114
FPA C IC + E C H F C+ L+ +CP
Sbjct: 16 FPAHFVKSISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCP 62
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 37.0 bits (85), Expect = 4e-04
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQH--CP 114
C IC + G+ + C + H C+ + + CP
Sbjct: 182 ICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNAEPRCP 221
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 36.7 bits (84), Expect = 7e-04
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 69 DEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER-QHCP 114
+ C IC + +VK C H + CL W Q CP
Sbjct: 328 MGSTFQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCP 371
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 8e-04
Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 29/111 (26%)
Query: 6 DGFNTSGFIIYHGAMGETIII------------DRFLNISRRYNDALSLDSELSPPRAPF 53
D ++T + HG++ +++ ++F I + + D E P P
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE---PTTPA 58
Query: 54 S-TRRFGQIPSIAFPADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECL 103
+F + + + ++ Q + + L F + L
Sbjct: 59 ELVGKF-----LGYVSSLVEPSKVG------QFDQVLNLCLTE--FENCYL 96
Score = 29.6 bits (66), Expect = 0.23
Identities = 18/82 (21%), Positives = 22/82 (26%), Gaps = 42/82 (51%)
Query: 30 LNISRRYNDALSLDSELSPPRAPFSTR------RFGQIPSIAFPADEAPDAQCVICLAPF 83
LN++ R S L R PFS R RF + +PF
Sbjct: 389 LNLTLR---KAKAPSGLDQSRIPFSERKLKFSNRFLPV------------------ASPF 427
Query: 84 QPGEEVKELLCHHKFHSECLEP 105
HS L P
Sbjct: 428 ---------------HSHLLVP 434
Score = 26.9 bits (59), Expect = 1.6
Identities = 32/167 (19%), Positives = 46/167 (27%), Gaps = 70/167 (41%)
Query: 12 GFIIYHGAMGETIIIDRFLNIS-----RRY---ND----ALSLDSELSPP--------RA 51
G++ + D+ LN+ Y ND A L E +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 52 PFSTRRFGQIP------SIAFPADEAPDAQCVICLAPF--QPG------EEVKEL----- 92
+ R + P S F A +AQ V A F Q G EE+++L
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLV---AIFGGQ-GNTDDYFEELRDLYQTYH 181
Query: 93 -----LCHHKFHSECLEP--------------------WLRERQHCP 114
L F +E L WL + P
Sbjct: 182 VLVGDLIK--FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 32.9 bits (75), Expect = 0.004
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLR 108
C +CL + + C F + CL+ ++
Sbjct: 8 CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVE 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 32.8 bits (75), Expect = 0.006
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 62 PSIAFPADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
P +A +C IC F + C H + S C+ +L + CP
Sbjct: 11 PGLAVMKTIDDLLRCGICFEYFN--IAMIIPQCSHNYCSLCIRKFLSYKTQCP 61
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 32.1 bits (73), Expect = 0.012
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 63 SIAFPADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQH-CP 114
+ F +C ICL E + C H+F C+ +R+ H CP
Sbjct: 8 DVEFDPPLESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCP 57
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 31.5 bits (71), Expect = 0.025
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 62 PSIAFPADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQH-CP 114
P F + QC+ C +C H +CL+ R + CP
Sbjct: 41 PFQLFLSKVEETFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCP 91
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 30.4 bits (68), Expect = 0.073
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 4/51 (7%)
Query: 65 AFPADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQH-CP 114
F CV C + C H +CL+ + + CP
Sbjct: 70 NFLKKLEQSFMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCP 117
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 30.4 bits (68), Expect = 0.081
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 66 FPADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
F +C ICL E + C H+F C+ +R+ H
Sbjct: 11 FDPPLESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKC 56
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 30.3 bits (67), Expect = 0.089
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQH--CP 114
C I P++ + C+H F + ++ +L+ CP
Sbjct: 184 CPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCP 222
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 29.5 bits (66), Expect = 0.11
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 63 SIAFPADEAP---DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQH-CP 114
S+A P D P + QC IC+ E L C+H C + + + CP
Sbjct: 2 SMALPKDAIPSLSECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCP 54
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 28.6 bits (64), Expect = 0.17
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 72 PDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQH--CP 114
+ C+IC + V C + + EC+ L E CP
Sbjct: 14 DELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLESDEHTCP 56
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 28.8 bits (64), Expect = 0.18
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE 109
A C +C +P ++ C +H CL+ +
Sbjct: 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTP 43
Score = 27.6 bits (61), Expect = 0.58
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 76 CVICLAPFQPGEEVKELLCH---HKFHSECLEPWLRE 109
C +C Q GE+ K L+C +H+ CL+P ++
Sbjct: 54 CKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKS 90
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 27.8 bits (62), Expect = 0.23
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 4/41 (9%)
Query: 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQH-CP 114
+C C K+ C H+F C+ L C
Sbjct: 17 KCEKCHLVL---CSPKQTECGHRFCESCMAALLSSSSPKCT 54
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 27.7 bits (62), Expect = 0.33
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 75 QCVICLAPFQPGEEV-KELLCHHKFHSECLEPWLRERQ---HCP 114
+C IC+ F + K L C H +CLE L CP
Sbjct: 17 ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCP 60
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 27.6 bits (61), Expect = 0.43
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 8/52 (15%)
Query: 70 EAPDAQCVICLAPFQPGEEVKELLCH-----HKFHSECLEPWLRERQ--HCP 114
+ C IC + CH H H CL+ W++ C
Sbjct: 12 PSSQDICRICHCEGDDESPLITP-CHCTGSLHFVHQACLQQWIKSSDTRCCE 62
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 26.9 bits (60), Expect = 0.45
Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+C C A + K L C H S CLE CP
Sbjct: 8 RCQQCQAEA---KCPKLLPCLHTLCSGCLE---ASGMQCP 41
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 26.8 bits (59), Expect = 0.52
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 6/50 (12%)
Query: 69 DEAPDAQCVICLAPFQPGEEVKELL----CHHKFHSECLEPWLRERQHCP 114
C IC + E E++ C +H C P +
Sbjct: 2 SSGSSGVCTICQEEY--SEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDS 49
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 27.6 bits (61), Expect = 0.65
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+C C + E V C H F S C+ + CP
Sbjct: 22 LLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIGTG--CP 59
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase;
1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB:
1n87_A
Length = 61
Score = 26.5 bits (59), Expect = 0.71
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
C I + V F LE ++++ + P
Sbjct: 6 CAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDP 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 27.0 bits (59), Expect = 0.72
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 67 PADEAPDAQCVICLAPF-QPGEEVKELLCHHKFHSECLEPWLRERQ-HCP 114
P + +C +C+ P C ++ C + CP
Sbjct: 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCP 54
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 27.2 bits (60), Expect = 1.00
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 67 PADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLR-ERQHCP 114
P + C ICL + KE C H+F ++C+ LR + CP
Sbjct: 48 PRSLHSELMCPICLDMLKNTMTTKE--CLHRFCADCIITALRSGNKECP 94
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 27.0 bits (59), Expect = 1.2
Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 4/50 (8%)
Query: 66 FPADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER-QHCP 114
C C + C H++ S CL L Q+C
Sbjct: 24 LGTKLEAKYLCSACRNVL---RRPFQAQCGHRYCSFCLASILSSGPQNCA 70
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 26.2 bits (57), Expect = 1.9
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 72 PDAQCVICLAPFQPGEE--VKELL----CHHKFHSECLEPWLRERQ 111
P C CL + E +EL+ C + H CL+
Sbjct: 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTV 49
Score = 24.2 bits (52), Expect = 8.7
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 57 RFGQIPSIAFPADEAPDAQCVICLAPFQPGEEVKELL----CHHKFHSECLEPWLRE 109
+F ++ A +C C + G+ +L C FH EC +P L
Sbjct: 42 KFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTR 98
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 25.0 bits (55), Expect = 2.3
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 74 AQCVICLAPFQPGEEVKELL---CHHKFHSECLEPWLRE 109
A+C +C + GE+ K +L C+ FH CL P L E
Sbjct: 1 ARCKVC---RKKGEDDKLILCDECNKAFHLFCLRPALYE 36
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase,
transferase-transferase inhibitor; HET: SUC 3CX FPP 778;
2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B*
3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Length = 520
Score = 26.4 bits (57), Expect = 2.7
Identities = 14/87 (16%), Positives = 23/87 (26%)
Query: 28 RFLNISRRYNDALSLDSELSPPRAPFSTRRFGQIPSIAFPADEAPDAQCVICLAPFQPGE 87
+F++ + Y + S P P ++ PS EA L
Sbjct: 222 KFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLT 281
Query: 88 EVKELLCHHKFHSECLEPWLRERQHCP 114
V + W +Q P
Sbjct: 282 SVPLPSFPLSIDANAALRWTVLQQGEP 308
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 25.1 bits (55), Expect = 3.9
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 72 PDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQH--CP 114
+ C+IC + V C + + EC+ L E CP
Sbjct: 12 DELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLESDEHTCP 54
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex,
transport protein, phosphatidylinositol 3-phosphate
binding, nucleotide-binding; 2.20A {Homo sapiens}
Length = 134
Score = 25.2 bits (55), Expect = 4.0
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 8/41 (19%)
Query: 27 DRFLNISRRYNDALSLDSELSPPRAPFSTRRFGQIPSIAFP 67
D + RRY+ + L ++ ++ ++ FP
Sbjct: 34 DETWTVFRRYSRFREMHKTL--------KLKYAELAALEFP 66
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 25.0 bits (54), Expect = 4.0
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 73 DAQCVICLAPFQPGEEVKELL----CHHKFHSECLEPWLRE 109
CV+C +L+ CH+ +H +C +P + +
Sbjct: 16 GLACVVCRQMTVASGN--QLVECQECHNLYHQDCHKPQVTD 54
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P
transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Length = 115
Score = 25.0 bits (55), Expect = 4.3
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 14/65 (21%)
Query: 3 QEDDGFNTSGFIIYHGAMGETIIIDRFLNISRRYNDALSLDSELSPPRAPFSTRRFGQIP 62
S ++ Y I ++ L+ RY+ L L +L + +G
Sbjct: 13 SRSGDSGGSAYVAY------NIHVNGVLHCRVRYSQLLGLHEQL--------RKEYGANV 58
Query: 63 SIAFP 67
AFP
Sbjct: 59 LPAFP 63
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain,
phosphoinositide binding, endocytosis/exocytosis
complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Length = 117
Score = 24.8 bits (54), Expect = 5.2
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 15/63 (23%)
Query: 5 DDGFNTSGFIIYHGAMGETIIIDRFLNISRRYNDALSLDSELSPPRAPFSTRRFGQIPSI 64
DD +++Y + + +RY++ L + L R G
Sbjct: 11 DDVKINPKYVLY------GVSTPNK-RLYKRYSEFWKLKTRL--------ERDVGSTIPY 55
Query: 65 AFP 67
FP
Sbjct: 56 DFP 58
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 77
Score = 24.4 bits (53), Expect = 5.7
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 67 PADEAPDAQCVICLAPFQPGEEVKELL---CHHKFHSECLEPWLRE 109
P + C +C E +LL C+ +H CL P L +
Sbjct: 20 PEKKCHSCSCRVC---GGKHEPNMQLLCDECNVAYHIYCLNPPLDK 62
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 24.2 bits (52), Expect = 8.5
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 76 CVICLAPFQPGEEV---KELL----CHHKFHSECLEPWLRERQHCP 114
C CL ++ +EL+ C H CL+ L +
Sbjct: 4 CDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVK 49
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 23.8 bits (51), Expect = 8.7
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 73 DAQCVICLAPFQPGEEVKELL--CHHKFHSECLEPWLRERQH-CP 114
D C C +K ++ C H C++ CP
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCP 47
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 23.5 bits (51), Expect = 9.2
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 10/53 (18%)
Query: 69 DEAPDAQCVICLAPFQPGEEVKELLCH-----HKFHSECLEPWLRERQ--HCP 114
++ C IC + + C H CL WL + C
Sbjct: 2 EDEDVPVCWIC---NEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQ 51
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 24.0 bits (51), Expect = 9.3
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER-QHCP 114
C C P + + + C H F +C ++ + CP
Sbjct: 4 CDKCGLPIKVYGRM--IPCKHVFCYDCAILHEKKGDKMCP 41
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.450
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,851,494
Number of extensions: 99447
Number of successful extensions: 337
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 94
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)