RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16979
(114 letters)
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 56.0 bits (135), Expect = 1e-12
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 73 DAQCVICLAPFQPGEEVKELL-CHHKFHSECLEPWLRERQHCP 114
+C +CLA + GEE + L C H FH+EC++ WL CP
Sbjct: 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCP 47
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 45.7 bits (108), Expect = 1e-08
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+C ICL L C H F C+ W+R+ CP
Sbjct: 7 RCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCP 44
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 44.7 bits (105), Expect = 5e-08
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 15/67 (22%)
Query: 63 SIAFPADEAPDAQCVICLAPF---------------QPGEEVKELLCHHKFHSECLEPWL 107
++A A + C IC V +C+H FH C+ WL
Sbjct: 11 AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL 70
Query: 108 RERQHCP 114
+ RQ CP
Sbjct: 71 KTRQVCP 77
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 39.2 bits (91), Expect = 6e-06
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQH-CP 114
C IC ++VK C H + CL W CP
Sbjct: 23 FQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCP 62
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 37.0 bits (85), Expect = 2e-05
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 75 QCVICLAPFQPGEEV-KELLCHHKFHSECLEPWLRERQHCP 114
+C +C+ P + + C ++ C +
Sbjct: 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLC 42
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 35.9 bits (82), Expect = 7e-05
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 73 DAQCVICLAPFQPGEEVKELL--CHHKFHSECLEPWLRERQH-CP 114
D C C +K ++ C H C++ CP
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCP 47
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 36.0 bits (83), Expect = 9e-05
Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 66 FPADEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQH-CP 114
FPA C IC + E C H F C+ L+ CP
Sbjct: 16 FPAHFVKSISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCP 62
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 35.0 bits (79), Expect = 4e-04
Identities = 8/43 (18%), Positives = 10/43 (23%)
Query: 70 EAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQH 112
A + P + C H FH CL
Sbjct: 37 VASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK 79
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 34.7 bits (79), Expect = 5e-04
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 71 APDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRER 110
+ + C +CL + + C F + CL+ ++
Sbjct: 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL 42
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 32.9 bits (75), Expect = 8e-04
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 69 DEAPDAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+E +C C A + K L C H S CLE CP
Sbjct: 2 EEFQFLRCQQCQAEA---KCPKLLPCLHTLCSGCLEAS---GMQCP 41
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 32.1 bits (72), Expect = 0.002
Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 4/50 (8%)
Query: 69 DEAPDAQCVICLAPFQPGEEV--KELLCHHKFHSECLEPWLRERQH--CP 114
++ C IC H CL WL ++ C
Sbjct: 2 EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQ 51
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 32.3 bits (73), Expect = 0.004
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ---HCP 114
+C ICL +E C H F C+ L +++ CP
Sbjct: 23 ECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCP 62
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 31.3 bits (70), Expect = 0.008
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 75 QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHC 113
+C C + + C H F S C+ +
Sbjct: 24 RCSRCTNILREPVCLGG--CEHIFCSNCVSDCIGTGCPV 60
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 28.2 bits (62), Expect = 0.050
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
C I + V F LE ++++ + P
Sbjct: 3 CAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDP 39
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 26.5 bits (58), Expect = 0.25
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRE 109
D IC +PG+ V C FH +C P L++
Sbjct: 4 DDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQD 40
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 25.3 bits (55), Expect = 0.52
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 74 AQCVICLAPFQPGEEVKELL---CHHKFHSECLEPWLRE 109
A+C +C + GE+ K +L C+ FH CL P L E
Sbjct: 1 ARCKVC---RKKGEDDKLILCDECNKAFHLFCLRPALYE 36
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 25.8 bits (56), Expect = 0.56
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 70 EAPDAQCVICLAPFQPGEE-VKELLCHHKFHSECLEPWLRE 109
QC C + E + LC FH +C++
Sbjct: 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPAR 43
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 25.8 bits (56), Expect = 0.57
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 68 ADEAPDA-QCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQHCP 114
+ E P+ +C I L ++ + + ++ WL
Sbjct: 2 SPEFPEYFRCPISLELM---KDPVIVSTGQTYERSSIQKWLDAGHKTC 46
>d2fk4a1 g.90.1.1 (A:4-67) E6 oncoprotein {Human papillomavirus
type 16 [TaxId: 333760]}
Length = 64
Score = 23.6 bits (51), Expect = 2.7
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 76 CVICLAPFQPGEEVKELLCHHKFH 99
C+ C P P E+ + L +FH
Sbjct: 23 CINCQKPLSPEEKQRHLDKKQRFH 46
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 23.3 bits (49), Expect = 5.2
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 73 DAQCVICLAPFQPGEEVKELL----CHHKFHSECLEPWLRE 109
CV+C +L+ CH+ +H +C +P + +
Sbjct: 16 GLACVVCRQMTV--ASGNQLVECQECHNLYHQDCHKPQVTD 54
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 22.6 bits (48), Expect = 6.6
Identities = 13/46 (28%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 73 DAQCVICLAPFQPGEEVKELLCHHKFHSECLEPWLRERQ----HCP 114
D C GE + C +H CL P L E CP
Sbjct: 6 DHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCP 51
>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 22.2 bits (47), Expect = 6.7
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
Query: 76 CVICLAPFQPGEEV----KELLC 94
C +C PF PG+ V KE +C
Sbjct: 3 CAVCRLPFPPGDRVTFNGKECMC 25
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus
halodurans [TaxId: 86665]}
Length = 224
Score = 23.7 bits (51), Expect = 7.3
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 24 IIIDRFLNISRRYNDALSLDSELSP---PRAPFSTRR 57
IIID F + +D L+ + ++ P ST++
Sbjct: 6 IIIDDFGGDVKGVDDFLTGEIPVTVAVMPFLEHSTKQ 42
>d1dt9a3 d.91.1.1 (A:5-142) N-terminal domain of eukaryotic peptide
chain release factor subunit 1, ERF1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 138
Score = 23.1 bits (50), Expect = 8.6
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 83 FQPGEEVKELL--CHHKFHSECLEPWLRE 109
F+P + + L C +KFH+E L L +
Sbjct: 110 FEPFKPINTSLYLCDNKFHTEALTALLSD 138
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.450
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 458,235
Number of extensions: 19196
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 29
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)