BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1698
         (258 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2C24|A Chain A, Family 30 Carbohydrate-Binding Module Of Cellulosomal
           Cellulase Cel9d-Cel44b Of Clostridium Thermocellum
 pdb|2C24|B Chain B, Family 30 Carbohydrate-Binding Module Of Cellulosomal
           Cellulase Cel9d-Cel44b Of Clostridium Thermocellum
          Length = 206

 Score = 27.3 bits (59), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 9/78 (11%)

Query: 54  LRTGLEQDLPTL-RTGSGQG-LPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRT 111
           L   + +D P +  +GSG G L T+    G  LP   T +  GLPTLR        T+++
Sbjct: 17  LDVQIFKDSPVVGWSGSGMGELETI----GDTLPVDTTVTYNGLPTLRLNVQT---TVQS 69

Query: 112 GSEQDLPTLRTGSEQDLS 129
           G    L TLR  +  DLS
Sbjct: 70  GWWISLLTLRGWNTHDLS 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.129    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,802,211
Number of Sequences: 62578
Number of extensions: 377514
Number of successful extensions: 639
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 4
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 50 (23.9 bits)