BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1698
(258 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O15016|TRI66_HUMAN Tripartite motif-containing protein 66 OS=Homo sapiens GN=TRIM66
PE=2 SV=4
Length = 1216
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%)
Query: 60 QDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPT 119
Q + L G+ Q +P+L + + + +L + Q +P+L T Q +P+L + Q +P
Sbjct: 657 QSVSNLTAGAPQAVPSLLSAPPKMVSSLTSVQNQAMPSLTTSHLQTVPSLVHSTFQSMPN 716
Query: 120 LRTGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTL 164
L + S Q +++L + Q P+L +G Q +P+L T Q +P +
Sbjct: 717 LISDSPQAMASLASDHPQAGPSLMSGHTQAVPSLATCPLQSIPPV 761
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%)
Query: 5 QDLPTLRTGSGQGLPTLRTGSEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDLPT 64
Q + L G+ Q +P+L + + +S+L + Q + +L T Q +P+L Q +P
Sbjct: 657 QSVSNLTAGAPQAVPSLLSAPPKMVSSLTSVQNQAMPSLTTSHLQTVPSLVHSTFQSMPN 716
Query: 65 LRTGSGQGLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTL 109
L + S Q + +L + Q P+L +G Q +P+L T Q +P +
Sbjct: 717 LISDSPQAMASLASDHPQAGPSLMSGHTQAVPSLATCPLQSIPPV 761
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%)
Query: 16 QGLPTLRTGSEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDLPTLRTGSGQGLPT 75
Q + L G+ Q + +L + + +S+L + Q +P+L T Q +P+L + Q +P
Sbjct: 657 QSVSNLTAGAPQAVPSLLSAPPKMVSSLTSVQNQAMPSLTTSHLQTVPSLVHSTFQSMPN 716
Query: 76 LRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTL 120
L + S Q + +L + Q P+L +G Q +P+L T Q +P +
Sbjct: 717 LISDSPQAMASLASDHPQAGPSLMSGHTQAVPSLATCPLQSIPPV 761
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%)
Query: 71 QGLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLST 130
Q + L G+ Q +P+L + + + +L + Q +P+L T Q +P+L + Q +
Sbjct: 657 QSVSNLTAGAPQAVPSLLSAPPKMVSSLTSVQNQAMPSLTTSHLQTVPSLVHSTFQSMPN 716
Query: 131 LRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLPTL 175
L + S Q + +L + Q P+L +G Q +P+L T Q +P +
Sbjct: 717 LISDSPQAMASLASDHPQAGPSLMSGHTQAVPSLATCPLQSIPPV 761
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%)
Query: 82 QDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLSTLRTGSEQDLPT 141
Q + L G+ Q +P+L + + + +L + Q +P+L T Q + +L + Q +P
Sbjct: 657 QSVSNLTAGAPQAVPSLLSAPPKMVSSLTSVQNQAMPSLTTSHLQTVPSLVHSTFQSMPN 716
Query: 142 LRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLPTLRTGSEQDLPTL 186
L + S Q + +L + Q P+L +G Q +P+L T Q +P +
Sbjct: 717 LISDSPQAMASLASDHPQAGPSLMSGHTQAVPSLATCPLQSIPPV 761
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%)
Query: 49 QDLPTLRTGLEQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPT 108
Q + L G Q +P+L + + + +L + Q +P+L T Q +P+L + Q +P
Sbjct: 657 QSVSNLTAGAPQAVPSLLSAPPKMVSSLTSVQNQAMPSLTTSHLQTVPSLVHSTFQSMPN 716
Query: 109 LRTGSEQDLPTLRTGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTL 153
L + S Q + +L + Q +L +G Q +P+L T Q +P +
Sbjct: 717 LISDSPQAMASLASDHPQAGPSLMSGHTQAVPSLATCPLQSIPPV 761
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%)
Query: 126 QDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLPTLRTGSEQDLPT 185
Q +S L G+ Q +P+L + + + +L + Q +P+L T Q +P+L + Q +P
Sbjct: 657 QSVSNLTAGAPQAVPSLLSAPPKMVSSLTSVQNQAMPSLTTSHLQTVPSLVHSTFQSMPN 716
Query: 186 LRMGSEQDLSTLRMGSEQDLSTLRTGSEQDLSTL 219
L S Q +++L Q +L +G Q + +L
Sbjct: 717 LISDSPQAMASLASDHPQAGPSLMSGHTQAVPSL 750
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 4 GQDLPTLRTGSGQGLPTLRTGSEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDLP 63
Q +P+L T Q +P+L + Q + L + S Q +++L + Q P+L +G Q +P
Sbjct: 689 NQAMPSLTTSHLQTVPSLVHSTFQSMPNLISDSPQAMASLASDHPQAGPSLMSGHTQAVP 748
Query: 64 TLRTGSGQGLPTL 76
+L T Q +P +
Sbjct: 749 SLATCPLQSIPPV 761
Score = 37.7 bits (86), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%)
Query: 137 QDLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLPTLRTGSEQDLPTLRMGSEQDLST 196
Q + L G+ Q +P+L + + + +L + Q +P+L T Q +P+L + Q +
Sbjct: 657 QSVSNLTAGAPQAVPSLLSAPPKMVSSLTSVQNQAMPSLTTSHLQTVPSLVHSTFQSMPN 716
Query: 197 LRMGSEQDLSTLRTGSEQDLSTLRMGSEQDLSTLRTGSEQDLPTL 241
L S Q +++L + Q +L G Q + +L T Q +P +
Sbjct: 717 LISDSPQAMASLASDHPQAGPSLMSGHTQAVPSLATCPLQSIPPV 761
>sp|O96133|YB145_PLAF7 Uncharacterized protein PFB0145c OS=Plasmodium falciparum (isolate
3D7) GN=PFB0145c PE=2 SV=1
Length = 1979
Score = 48.1 bits (113), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 62/123 (50%)
Query: 113 SEQDLPTLRTGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDL 172
+E + L+ E ++TL+ +E + TL+ + + TL+ E + T++ E +
Sbjct: 727 NEDKINMLKEEYEDKINTLKEQNEDKINTLKEQNEDKINTLKEEYEHKINTMKEEYEHKI 786
Query: 173 PTLRTGSEQDLPTLRMGSEQDLSTLRMGSEQDLSTLRTGSEQDLSTLRMGSEQDLSTLRT 232
TL +E + TL +E ++T++ E ++TL +E +++L+ E ++ + +
Sbjct: 787 NTLNEQNEHKINTLNEQNEHKINTMKEEYEDKMNTLNEQNEDKMNSLKEEYENKINQINS 846
Query: 233 GSE 235
+E
Sbjct: 847 NNE 849
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 67/138 (48%)
Query: 105 DLPTLRTGSEQDLPTLRTGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTL 164
++ ++ ++ L L+ + + + +E + L+ + TL+ +E + TL
Sbjct: 697 EMKMMKEEHDKKLAELKDDCDVRIREMNEKNEDKINMLKEEYEDKINTLKEQNEDKINTL 756
Query: 165 RTGSEQDLPTLRTGSEQDLPTLRMGSEQDLSTLRMGSEQDLSTLRTGSEQDLSTLRMGSE 224
+ +E + TL+ E + T++ E ++TL +E ++TL +E ++T++ E
Sbjct: 757 KEQNEDKINTLKEEYEHKINTMKEEYEHKINTLNEQNEHKINTLNEQNEHKINTMKEEYE 816
Query: 225 QDLSTLRTGSEQDLPTLR 242
++TL +E + +L+
Sbjct: 817 DKMNTLNEQNEDKMNSLK 834
Score = 46.6 bits (109), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 65/135 (48%)
Query: 104 QDLPTLRTGSEQDLPTLRTGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPT 163
+ L L+ + + + +E ++ L+ E + TL+ + + TL+ +E + T
Sbjct: 707 KKLAELKDDCDVRIREMNEKNEDKINMLKEEYEDKINTLKEQNEDKINTLKEQNEDKINT 766
Query: 164 LRTGSEQDLPTLRTGSEQDLPTLRMGSEQDLSTLRMGSEQDLSTLRTGSEQDLSTLRMGS 223
L+ E + T++ E + TL +E ++TL +E ++T++ E ++TL +
Sbjct: 767 LKEEYEHKINTMKEEYEHKINTLNEQNEHKINTLNEQNEHKINTMKEEYEDKMNTLNEQN 826
Query: 224 EQDLSTLRTGSEQDL 238
E +++L+ E +
Sbjct: 827 EDKMNSLKEEYENKI 841
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 69/142 (48%)
Query: 109 LRTGSEQDLPTLRTGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTLRTGS 168
L+ E + TL+ +E ++TL+ +E + TL+ + T++ E + TL +
Sbjct: 734 LKEEYEDKINTLKEQNEDKINTLKEQNEDKINTLKEEYEHKINTMKEEYEHKINTLNEQN 793
Query: 169 EQDLPTLRTGSEQDLPTLRMGSEQDLSTLRMGSEQDLSTLRTGSEQDLSTLRMGSEQDLS 228
E + TL +E + T++ E ++TL +E +++L+ E ++ + +E +
Sbjct: 794 EHKINTLNEQNEHKINTMKEEYEDKMNTLNEQNEDKMNSLKEEYENKINQINSNNEIKIK 853
Query: 229 TLRTGSEQDLPTLRMGLPARRR 250
+ +++ L++ L +++
Sbjct: 854 DVVNEYIEEVDKLKVTLDEKKK 875
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 66/137 (48%)
Query: 105 DLPTLRTGSEQDLPTLRTGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTL 164
DL + E ++ ++ ++ L+ L+ + + + + + L+ E + TL
Sbjct: 686 DLKRKLSLKESEMKMMKEEHDKKLAELKDDCDVRIREMNEKNEDKINMLKEEYEDKINTL 745
Query: 165 RTGSEQDLPTLRTGSEQDLPTLRMGSEQDLSTLRMGSEQDLSTLRTGSEQDLSTLRMGSE 224
+ +E + TL+ +E + TL+ E ++T++ E ++TL +E ++TL +E
Sbjct: 746 KEQNEDKINTLKEQNEDKINTLKEEYEHKINTMKEEYEHKINTLNEQNEHKINTLNEQNE 805
Query: 225 QDLSTLRTGSEQDLPTL 241
++T++ E + TL
Sbjct: 806 HKINTMKEEYEDKMNTL 822
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 61/127 (48%)
Query: 116 DLPTLRTGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLPTL 175
DL + E ++ ++ ++ L L+ + + +E + L+ E + TL
Sbjct: 686 DLKRKLSLKESEMKMMKEEHDKKLAELKDDCDVRIREMNEKNEDKINMLKEEYEDKINTL 745
Query: 176 RTGSEQDLPTLRMGSEQDLSTLRMGSEQDLSTLRTGSEQDLSTLRMGSEQDLSTLRTGSE 235
+ +E + TL+ +E ++TL+ E ++T++ E ++TL +E ++TL +E
Sbjct: 746 KEQNEDKINTLKEQNEDKINTLKEEYEHKINTMKEEYEHKINTLNEQNEHKINTLNEQNE 805
Query: 236 QDLPTLR 242
+ T++
Sbjct: 806 HKINTMK 812
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 53/106 (50%)
Query: 108 TLRTGSEQDLPTLRTGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTLRTG 167
TL+ +E + TL+ +E ++TL+ E + T++ + TL +E + TL
Sbjct: 744 TLKEQNEDKINTLKEQNEDKINTLKEEYEHKINTMKEEYEHKINTLNEQNEHKINTLNEQ 803
Query: 168 SEQDLPTLRTGSEQDLPTLRMGSEQDLSTLRMGSEQDLSTLRTGSE 213
+E + T++ E + TL +E +++L+ E ++ + + +E
Sbjct: 804 NEHKINTMKEEYEDKMNTLNEQNEDKMNSLKEEYENKINQINSNNE 849
Score = 36.6 bits (83), Expect = 0.17, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 54/116 (46%)
Query: 21 LRTGSEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDLPTLRTGSGQGLPTLRTGS 80
L+ E ++TL+ +E ++TL+ +E + TL+ E + T++ + TL +
Sbjct: 734 LKEEYEDKINTLKEQNEDKINTLKEQNEDKINTLKEEYEHKINTMKEEYEHKINTLNEQN 793
Query: 81 GQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLSTLRTGSE 136
+ TL + + T++ + TL +E + +L+ E ++ + + +E
Sbjct: 794 EHKINTLNEQNEHKINTMKEEYEDKMNTLNEQNEDKMNSLKEEYENKINQINSNNE 849
Score = 34.3 bits (77), Expect = 0.99, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 52/115 (45%)
Query: 25 SEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDLPTLRTGSGQGLPTLRTGSGQDL 84
+E ++ L+ E ++TL+ +E + TL+ E + TL+ + T++ +
Sbjct: 727 NEDKINMLKEEYEDKINTLKEQNEDKINTLKEQNEDKINTLKEEYEHKINTMKEEYEHKI 786
Query: 85 PTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLSTLRTGSEQDL 139
TL + + TL + + T++ E + TL +E +++L+ E +
Sbjct: 787 NTLNEQNEHKINTLNEQNEHKINTMKEEYEDKMNTLNEQNEDKMNSLKEEYENKI 841
Score = 33.5 bits (75), Expect = 1.4, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 49/106 (46%)
Query: 20 TLRTGSEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDLPTLRTGSGQGLPTLRTG 79
TL+ +E ++TL+ +E ++TL+ E + T++ E + TL + + TL
Sbjct: 744 TLKEQNEDKINTLKEQNEDKINTLKEEYEHKINTMKEEYEHKINTLNEQNEHKINTLNEQ 803
Query: 80 SGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSE 125
+ + T++ + TL + + +L+ E + + + +E
Sbjct: 804 NEHKINTMKEEYEDKMNTLNEQNEDKMNSLKEEYENKINQINSNNE 849
Score = 33.5 bits (75), Expect = 1.5, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 60/138 (43%)
Query: 6 DLPTLRTGSGQGLPTLRTGSEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDLPTL 65
++ ++ + L L+ + + + +E ++ L+ E + TL+ E + TL
Sbjct: 697 EMKMMKEEHDKKLAELKDDCDVRIREMNEKNEDKINMLKEEYEDKINTLKEQNEDKINTL 756
Query: 66 RTGSGQGLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSE 125
+ + + TL+ + T++ + TL + + TL +E + T++ E
Sbjct: 757 KEQNEDKINTLKEEYEHKINTMKEEYEHKINTLNEQNEHKINTLNEQNEHKINTMKEEYE 816
Query: 126 QDLSTLRTGSEQDLPTLR 143
++TL +E + +L+
Sbjct: 817 DKMNTLNEQNEDKMNSLK 834
>sp|A6QL64|AN36A_HUMAN Ankyrin repeat domain-containing protein 36A OS=Homo sapiens
GN=ANKRD36 PE=2 SV=3
Length = 1941
Score = 44.7 bits (104), Expect = 6e-04, Method: Composition-based stats.
Identities = 63/226 (27%), Positives = 96/226 (42%), Gaps = 6/226 (2%)
Query: 11 RTGSGQGLPTLRTGSEQDLSTLRTGSE-QDLSTLRTGSEQDLPTLRTGLEQDLPTLRTGS 69
R S Q PTL+ S+++ S L E +D RT S + P L+ + L
Sbjct: 849 RKVSSQKPPTLKGTSDEEDSVLGIARENKDGEKSRTVSSEKPPGLKASSAEKDSVLNIAR 908
Query: 70 GQ--GLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQD 127
G+ G T R S + T + + T +D R S Q P L+ S+++
Sbjct: 909 GKKDGEKTKRVSSRKKPSLEATSDEKDSFSNITREKKDGEISRKVSSQKPPALKGTSDEE 968
Query: 128 LSTLRTGSE-QDLPTLRTGSGQDLPTLRTGSEQDLPTLRTG-SEQDLPTLRTGSEQDLPT 185
S L E +D RT S + P L+ S++ L ++D RT S Q PT
Sbjct: 969 DSVLGIARENKDGEKSRTVSSEKPPGLKATSDEKDSVLNIARGKKDGEKTRTVSSQKPPT 1028
Query: 186 LRMGSEQDLSTLRMGSE-QDLSTLRTGSEQDLSTLRMGSEQDLSTL 230
L+ S+++ S L + E +D RT S + S L+ S + S L
Sbjct: 1029 LKATSDEEDSVLSIARENKDGEKSRTVSSEKPSGLKATSAEKDSVL 1074
Score = 35.0 bits (79), Expect = 0.51, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 8/226 (3%)
Query: 12 TGSGQGLPTLRTGSEQDLSTLRTGSE-QDLSTLRTGSEQDLPTLR--TGLEQDLPTLRTG 68
T S Q P L+ ++++ S +E +D T S Q P L+ T E + + T
Sbjct: 680 TVSSQKQPALKATTDEEDSVSNIATEIKDGEKSGTVSSQKQPALKATTDEEDSVSNIATE 739
Query: 69 SGQGLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSG-QDLPTLRTGSEQDLPTLRTGSEQD 127
G + T S Q P L+ + + + +D T S Q P L S+++
Sbjct: 740 IKDGEKS-GTVSSQKQPALKATTDEKDSVSNIATEIKDGEKSGTVSSQKPPALTATSDEE 798
Query: 128 LSTLRTGSE-QDLPTLRTGSGQDLPTLR-TGSEQDLPTLRTGSEQDLPTLRTGSEQDLPT 185
S L E +D RT S + P L+ T E+D + T ++D R S Q PT
Sbjct: 799 GSVLSIARENKDGEKSRTVSSRKKPALKATSDEKDSFSNITRGKKDGEISRKVSSQKPPT 858
Query: 186 LRMGSEQDLSTLRMGSE-QDLSTLRTGSEQDLSTLRMGSEQDLSTL 230
L+ S+++ S L + E +D RT S + L+ S + S L
Sbjct: 859 LKGTSDEEDSVLGIARENKDGEKSRTVSSEKPPGLKASSAEKDSVL 904
>sp|Q10172|PAN1_SCHPO Actin cytoskeleton-regulatory complex protein pan1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pan1 PE=1 SV=1
Length = 1794
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 99/207 (47%), Gaps = 27/207 (13%)
Query: 11 RTGSGQGLPTLRTGSEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDLPTLRTGSG 70
RTG +P G +Q ++ RTG Q + RTG +Q + RTG++ +P RTG
Sbjct: 572 RTGMQPQMP----GMQQPMAPQRTGM-QPMMPQRTGMQQPMAPQRTGMQPMMPQ-RTGMQ 625
Query: 71 QGLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLST 130
+P G Q + RTG +P RTG +P G +Q + RTG Q ++
Sbjct: 626 PQMP----GMQQPMAPQRTGMQPMMPQ-RTGMQPQMP----GMQQPMAPQRTGM-QPMAP 675
Query: 131 LRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLPTLRTGSEQDLPTLRMGS 190
RTG + +P RTG +P G +Q + RTG + +P RTG + +P G
Sbjct: 676 QRTGMQPMMPQ-RTGMQPQMP----GMQQPMAPQRTGMQPMMPQ-RTGMQPQMP----GM 725
Query: 191 EQDLSTLRMGSEQDLSTLRTGSEQDLS 217
+Q ++ R G Q ++ RTG + ++
Sbjct: 726 QQPMAPQRTGM-QPMAPQRTGMQPQMT 751
>sp|E7DNB6|TMP_BPDP1 Tape measure protein OS=Pneumococcus phage Dp-1 GN=TMP PE=4 SV=1
Length = 1149
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 59/215 (27%), Positives = 86/215 (40%)
Query: 5 QDLPTLRTGSGQGLPTLRTGSEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDLPT 64
Q LPT+ + Q + L G Q L TL Q LS L G Q LP + Q + +
Sbjct: 681 QSLPTIIQAAVQIITALFNGLVQALPTLIQAGLQILSALINGLVQALPAIIQAAVQIIMS 740
Query: 65 LRTGSGQGLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTLRTGS 124
L + LP + + Q + L + + + Q L L G Q LP L T +
Sbjct: 741 LVQALIENLPMIIEAAMQIIMGLVNALIENIGPILEAGIQILMALIEGLIQVLPELITAA 800
Query: 125 EQDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLPTLRTGSEQDLP 184
Q +++L +LP L + L +L G LP L G+ Q + L +P
Sbjct: 801 IQIITSLLEAILSNLPQLLEAGVKLLLSLLQGLLNMLPQLIAGALQIMMALLKAVIDFVP 860
Query: 185 TLRMGSEQDLSTLRMGSEQDLSTLRTGSEQDLSTL 219
L Q L L G L +L + + LS+L
Sbjct: 861 KLLQAGVQLLKALIQGIASLLGSLLSTAGNMLSSL 895
Score = 42.0 bits (97), Expect = 0.004, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 61/147 (41%)
Query: 40 LSTLRTGSEQDLPTLRTGLEQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSGQGLPTLR 99
L L G Q LPT+ Q + L G Q LPTL Q L L G Q LP +
Sbjct: 672 LEALINGLVQSLPTIIQAAVQIITALFNGLVQALPTLIQAGLQILSALINGLVQALPAII 731
Query: 100 TGSGQDLPTLRTGSEQDLPTLRTGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQ 159
+ Q + +L ++LP + + Q + L +++ + Q L L G Q
Sbjct: 732 QAAVQIIMSLVQALIENLPMIIEAAMQIIMGLVNALIENIGPILEAGIQILMALIEGLIQ 791
Query: 160 DLPTLRTGSEQDLPTLRTGSEQDLPTL 186
LP L T + Q + +L +LP L
Sbjct: 792 VLPELITAAIQIITSLLEAILSNLPQL 818
Score = 40.8 bits (94), Expect = 0.010, Method: Composition-based stats.
Identities = 61/235 (25%), Positives = 92/235 (39%)
Query: 7 LPTLRTGSGQGLPTLRTGSEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDLPTLR 66
+P L + L L G Q L T+ + Q ++ L G Q LPTL Q L L
Sbjct: 661 MPQLVEAGIKILEALINGLVQSLPTIIQAAVQIITALFNGLVQALPTLIQAGLQILSALI 720
Query: 67 TGSGQGLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQ 126
G Q LP + + Q + +L + LP + + Q + L +++ + Q
Sbjct: 721 NGLVQALPAIIQAAVQIIMSLVQALIENLPMIIEAAMQIIMGLVNALIENIGPILEAGIQ 780
Query: 127 DLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLPTLRTGSEQDLPTL 186
L L G Q LP L T + Q + +L +LP L + L +L G LP L
Sbjct: 781 ILMALIEGLIQVLPELITAAIQIITSLLEAILSNLPQLLEAGVKLLLSLLQGLLNMLPQL 840
Query: 187 RMGSEQDLSTLRMGSEQDLSTLRTGSEQDLSTLRMGSEQDLSTLRTGSEQDLPTL 241
G+ Q + L + L Q L L G L +L + + L +L
Sbjct: 841 IAGALQIMMALLKAVIDFVPKLLQAGVQLLKALIQGIASLLGSLLSTAGNMLSSL 895
>sp|Q924W6|TRI66_MOUSE Tripartite motif-containing protein 66 OS=Mus musculus GN=Trim66
PE=1 SV=3
Length = 1242
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%)
Query: 75 TLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLSTLRTG 134
+L +P+L +G Q + +L + S +P+L Q +P L G+ Q S LR
Sbjct: 655 SLTAAPTHTIPSLLSGPPQTVSSLMSVSNHAMPSLTASHLQPVPNLVRGTFQSTSNLRGD 714
Query: 135 SEQDLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLPTL 175
S Q + L + Q P+L +G Q P+L T Q +P +
Sbjct: 715 SSQAITGLASNHSQAGPSLMSGHTQAAPSLATCPLQGMPPV 755
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%)
Query: 64 TLRTGSGQGLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTLRTG 123
+L +P+L +G Q + +L + S +P+L Q +P L G+ Q LR
Sbjct: 655 SLTAAPTHTIPSLLSGPPQTVSSLMSVSNHAMPSLTASHLQPVPNLVRGTFQSTSNLRGD 714
Query: 124 SEQDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTL 164
S Q ++ L + Q P+L +G Q P+L T Q +P +
Sbjct: 715 SSQAITGLASNHSQAGPSLMSGHTQAAPSLATCPLQGMPPV 755
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 9 TLRTGSGQGLPTLRTGSEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDLPTLRTG 68
+L +P+L +G Q +S+L + S + +L Q +P L G Q LR
Sbjct: 655 SLTAAPTHTIPSLLSGPPQTVSSLMSVSNHAMPSLTASHLQPVPNLVRGTFQSTSNLRGD 714
Query: 69 SGQGLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTL 109
S Q + L + Q P+L +G Q P+L T Q +P +
Sbjct: 715 SSQAITGLASNHSQAGPSLMSGHTQAAPSLATCPLQGMPPV 755
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 29 LSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDLPTLRTGSGQGLPTLRTGSGQDLPTLR 88
+ +L +G Q +S+L + S +P+L Q +P L G+ Q LR S Q + L
Sbjct: 664 IPSLLSGPPQTVSSLMSVSNHAMPSLTASHLQPVPNLVRGTFQSTSNLRGDSSQAITGLA 723
Query: 89 TGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTL 120
+ Q P+L +G Q P+L T Q +P +
Sbjct: 724 SNHSQAGPSLMSGHTQAAPSLATCPLQGMPPV 755
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%)
Query: 40 LSTLRTGSEQDLPTLRTGLEQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSGQGLPTLR 99
+S+L +P+L +G Q + +L + S +P+L Q +P L G+ Q LR
Sbjct: 653 VSSLTAAPTHTIPSLLSGPPQTVSSLMSVSNHAMPSLTASHLQPVPNLVRGTFQSTSNLR 712
Query: 100 TGSGQDLPTLRTGSEQDLPTLRTGSEQDLSTLRTGSEQDLPTL 142
S Q + L + Q P+L +G Q +L T Q +P +
Sbjct: 713 GDSSQAITGLASNHSQAGPSLMSGHTQAAPSLATCPLQGMPPV 755
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 3 SGQDLPTLRTGSGQGLPTLRTGSEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDL 62
S +P+L Q +P L G+ Q S LR S Q ++ L + Q P+L +G Q
Sbjct: 682 SNHAMPSLTASHLQPVPNLVRGTFQSTSNLRGDSSQAITGLASNHSQAGPSLMSGHTQAA 741
Query: 63 PTLRTGSGQGLPTL 76
P+L T QG+P +
Sbjct: 742 PSLATCPLQGMPPV 755
Score = 37.4 bits (85), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%)
Query: 62 LPTLRTGSGQGLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTLR 121
+P+L +G Q + +L + S +P+L Q +P L G+ Q LR S Q + L
Sbjct: 664 IPSLLSGPPQTVSSLMSVSNHAMPSLTASHLQPVPNLVRGTFQSTSNLRGDSSQAITGLA 723
Query: 122 TGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTL 153
+ Q +L +G Q P+L T Q +P +
Sbjct: 724 SNHSQAGPSLMSGHTQAAPSLATCPLQGMPPV 755
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%)
Query: 2 GSGQDLPTLRTGSGQGLPTLRTGSEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQD 61
G Q + +L + S +P+L Q + L G+ Q S LR S Q + L + Q
Sbjct: 670 GPPQTVSSLMSVSNHAMPSLTASHLQPVPNLVRGTFQSTSNLRGDSSQAITGLASNHSQA 729
Query: 62 LPTLRTGSGQGLPTLRTGSGQDLPTL 87
P+L +G Q P+L T Q +P +
Sbjct: 730 GPSLMSGHTQAAPSLATCPLQGMPPV 755
Score = 34.3 bits (77), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 117 LPTLRTGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLPTLR 176
+P+L +G Q +S+L + S +P+L Q +P L G+ Q LR S Q + L
Sbjct: 664 IPSLLSGPPQTVSSLMSVSNHAMPSLTASHLQPVPNLVRGTFQSTSNLRGDSSQAITGLA 723
Query: 177 TGSEQDLPTLRMGSEQDLSTL 197
+ Q P+L G Q +L
Sbjct: 724 SNHSQAGPSLMSGHTQAAPSL 744
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 161 LPTLRTGSEQDLPTLRTGSEQDLPTLRMGSEQDLSTLRMGSEQDLSTLRTGSEQDLSTLR 220
+P+L +G Q + +L + S +P+L Q + L G+ Q S LR S Q ++ L
Sbjct: 664 IPSLLSGPPQTVSSLMSVSNHAMPSLTASHLQPVPNLVRGTFQSTSNLRGDSSQAITGLA 723
Query: 221 MGSEQDLSTLRTGSEQDLPTL 241
Q +L +G Q P+L
Sbjct: 724 SNHSQAGPSLMSGHTQAAPSL 744
>sp|P48681|NEST_HUMAN Nestin OS=Homo sapiens GN=NES PE=1 SV=2
Length = 1621
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 92/189 (48%), Gaps = 3/189 (1%)
Query: 54 LRTGLEQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGS 113
L + L+++L +L + LR+ D LR + + LR+ ++ R+
Sbjct: 656 LVSSLQENLESLTALEKENQEPLRSPEVGDEEALRPLTKENQEPLRSLEDENKEAFRSLE 715
Query: 114 EQDLPTLRTGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLP 173
+++ L+T E+D S +R ++ +LR+ QD TLRT ++ R+ EQD
Sbjct: 716 KENQEPLKTLEEEDQSIVRPLETENHKSLRSLEEQDQETLRTLEKETQQRRRSLGEQDQM 775
Query: 174 TLRTGSEQDLPTLRMGSEQDLSTLRMGSEQDLSTLRTGSEQDLSTLRMGSEQDLSTLRTG 233
TLR + DL L+ ++ L +++ L +L+ S + + +L + L +L++
Sbjct: 776 TLRPPEKVDLEPLKSLDQEIARPLENENQEFLKSLKEESVEAVKSLET---EILESLKSA 832
Query: 234 SEQDLPTLR 242
+++L TL+
Sbjct: 833 GQENLETLK 841
>sp|P09593|SANT_PLAFV S-antigen protein OS=Plasmodium falciparum (isolate v1) PE=4 SV=1
Length = 375
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 81/220 (36%), Gaps = 12/220 (5%)
Query: 24 GSEQDLSTLR----TGSEQDLSTLRTGSEQDLPTLRTGLEQDLPTLRTGSGQGLPTLRTG 79
GS+Q++ + GSE T GSE P G + P G G P G
Sbjct: 93 GSDQEVKVQKEQGGPGSEGPKGTGGPGSEG--PKGTGGPGSEGPKGTGGPGSEGPKGTGG 150
Query: 80 SGQDLPTLRTGSGQGLPTLRTGSGQDLP--TLRTGSEQDLPTLRTGSEQDLSTLRTGSEQ 137
G + P G G P G G + P T GSE T GSE T GSE
Sbjct: 151 PGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEG 210
Query: 138 DLPTLRTGSGQDLP--TLRTGSEQDLPTLRTGSEQDLPTLRTGSEQDLPTLRMGSEQDLS 195
P G G + P T GSE T GSE T GSE T GSE
Sbjct: 211 --PKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKGTGGPGSEGPKG 268
Query: 196 TLRMGSEQDLSTLRTGSEQDLSTLRMGSEQDLSTLRTGSE 235
T GSE T GSE T GSE T GSE
Sbjct: 269 TGGPGSEGPKGTGGPGSESPKGTGGPGSEGPKGTGGPGSE 308
>sp|Q5XAK5|TKT_STRP6 Transketolase OS=Streptococcus pyogenes serotype M6 (strain ATCC
BAA-946 / MGAS10394) GN=tkt PE=1 SV=1
Length = 729
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 97 TLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTLRT- 155
T S LP +R + Q+LPT+ + ++ G + P + S + +P L
Sbjct: 499 TFFVFSNYLLPAVRMAALQNLPTVYVMTHDSIAVGEDGPTHE-PIEQLASVRSMPNLNVI 557
Query: 156 ----GSEQDLPTLRTGSEQDLPTLRTGSEQDLPTL 186
G+E + R +E D PT+ + Q+LP L
Sbjct: 558 RPADGNETNAAWKRAIAETDRPTMLVLTRQNLPVL 592
>sp|Q8NZX4|TKT_STRP8 Transketolase OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=tkt PE=3 SV=1
Length = 729
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 97 TLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTLRT- 155
T S LP +R + Q+LPT+ + ++ G + P + S + +P L
Sbjct: 499 TFFVFSNYLLPAVRMAALQNLPTVYVMTHDSIAVGEDGPTHE-PIEQLASVRSMPNLNVI 557
Query: 156 ----GSEQDLPTLRTGSEQDLPTLRTGSEQDLPTL 186
G+E + R +E D PT+ + Q+LP L
Sbjct: 558 RPADGNETNAAWKRAIAETDRPTMLVLTRQNLPVL 592
>sp|Q5JPF3|AN36C_HUMAN Ankyrin repeat domain-containing protein 36C OS=Homo sapiens
GN=ANKRD36C PE=2 SV=3
Length = 1778
Score = 36.2 bits (82), Expect = 0.26, Method: Composition-based stats.
Identities = 59/225 (26%), Positives = 99/225 (44%), Gaps = 6/225 (2%)
Query: 12 TGSGQGLPTLRTGSEQDLSTLRTGSE-QDLSTLRTGSEQDLPTLR-TGLEQDLPTLRTGS 69
T S Q P L+ ++++ S +E +D T S Q P L+ T E+D ++
Sbjct: 714 TVSSQKQPALKATTDEEDSVSNIATEIKDGEKSGTVSSQKQPALKATTDEEDSVSIIATE 773
Query: 70 GQGLPTLRTGSGQDLPTLRTGSGQGLPTLR-TGSGQDLPTLRTGSEQDLPTLRTGSEQDL 128
+ T S + P L+ S + T +D RT + + L+ S+++
Sbjct: 774 IKDGEKSGTVSSRKKPALKATSDEKDSFSNITREKKDGEISRTVTSEKPAGLKATSDEED 833
Query: 129 STLRTG-SEQDLPTLRTGSGQDLPTLR-TGSEQDLPTLRTGSEQDLPTLRTGSEQDLPTL 186
S L ++D R S + P L+ T E+D + T ++D T RT S Q P L
Sbjct: 834 SVLNIARGKEDGEKTRRVSSRKKPALKATSDEKDSFSNITREKKDGETSRTVSSQKPPAL 893
Query: 187 RMGSEQDLSTLRMGSE-QDLSTLRTGSEQDLSTLRMGSEQDLSTL 230
+ S+++ S L + E +D RT S + S L+ S++ S L
Sbjct: 894 KATSDEEDSVLNIAREKKDGEKSRTVSSEKPSGLKATSDEKDSVL 938
>sp|Q28343|PGCA_CANFA Aggrecan core protein OS=Canis familiaris GN=ACAN PE=2 SV=2
Length = 2333
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 101/241 (41%), Gaps = 24/241 (9%)
Query: 14 SGQGLPTLRTGSEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDLPTLRTGSGQGL 73
SG+G +G E DLS L +G + S G LP+ R GLE T G GL
Sbjct: 1204 SGEGPEAFASGVE-DLSILPSGEGPEASASGVGDLSGLPSGREGLETS--TSGVGDLSGL 1260
Query: 74 PTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLSTLRT 133
P+ R G L T +G G L L +G G + G LP+ R G L T +
Sbjct: 1261 PSGREG----LETSTSGVGD-LSGLPSGEGPEASASGIGDISGLPSGREG----LETSSS 1311
Query: 134 GSEQDLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLPTLRTGSEQDLPTLRMGSEQD 193
G E D P +DL L +G E T +G E DL L +G E L T G+E D
Sbjct: 1312 GVE-DHPETSASGVEDLSGLPSGVEGHPETSASGVE-DLSDLSSGGE-GLETSASGAE-D 1367
Query: 194 LSTLRMGSEQDLSTLRTGSEQDLSTLRMGSEQDLSTLRTGSEQDLPTLRMGLPARRRGIT 253
LS G E DL +G+ D + G TL +G + +L G G+
Sbjct: 1368 LSGFPSGKE-DLIGSASGA-LDFGRIPSG------TLGSGQAPEASSLPSGFSGEYSGVD 1419
Query: 254 F 254
F
Sbjct: 1420 F 1420
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 106/268 (39%), Gaps = 38/268 (14%)
Query: 5 QDLPTLRTGSGQGLPTLRTGSEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLE----- 59
+DL L +G G P T DLS L +G ++S G LP+ R GLE
Sbjct: 947 EDLSGLPSGEG---PETSTSGVGDLSRLPSGEGPEVSASGVGDLSGLPSGREGLETSTSG 1003
Query: 60 -QDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGS----- 113
+DL L +G G P T DL L +G G P + +DL L +G
Sbjct: 1004 VEDLSGLPSGEG---PEASTSGVGDLSRLPSGEG---PEVSASGVEDLSGLPSGEGLEAS 1057
Query: 114 ---EQDLPTLRTGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQ 170
DL L +G + S G DL L +G G P + +DL L +G
Sbjct: 1058 ASGVGDLSGLPSGEGPEASASGVG---DLSRLPSGEG---PEVSASGVEDLSGLSSGESP 1111
Query: 171 DLPTLRTGSEQDLPTLRMGSEQ------DLSTLRMGSEQDLSTLRTGSEQDLSTLRMGSE 224
+ G LP+ R G E DLS L G Q+ S +G E DLS L G
Sbjct: 1112 EASASGVGDLSGLPSGREGLETSASGVGDLSGLPSGEGQEASA--SGVE-DLSRLPSGEG 1168
Query: 225 QDLSTLRTGSEQDLPTLRMGLPARRRGI 252
+ S G LP+ R GL G+
Sbjct: 1169 PEASASGVGELSGLPSGREGLETSASGV 1196
>sp|Q6PAW2|UBP16_XENLA Ubiquitin carboxyl-terminal hydrolase 16 OS=Xenopus laevis GN=usp16
PE=2 SV=1
Length = 901
Score = 35.0 bits (79), Expect = 0.58, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 30/55 (54%), Gaps = 11/55 (20%)
Query: 191 EQDLSTLRMGSEQDLSTLRTGSEQDLSTLRMGSEQ----------DLSTLRTGSE 235
E DLSTL G+E+ L T E DLSTL G+E+ DLSTL GSE
Sbjct: 503 ETDLSTLENGNEESADGLNT-METDLSTLENGNEEMAGGFKTMEMDLSTLENGSE 556
Score = 34.3 bits (77), Expect = 0.92, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 125 EQDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLPTLRTGSE 180
E DLSTL G+E+ L T DL TL G+E+ +T E DL TL GSE
Sbjct: 503 ETDLSTLENGNEESADGLNTME-TDLSTLENGNEEMAGGFKT-MEMDLSTLENGSE 556
Score = 34.3 bits (77), Expect = 0.93, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 8 PTLRTGSGQGLPTLRTGSEQDLSTLRTGSEQ----------DLSTLRTGSEQDLPTLRTG 57
P T + GL T+ T DLSTL G+E+ DLSTL G+E+ +T
Sbjct: 489 PDNETPTADGLNTMET----DLSTLENGNEESADGLNTMETDLSTLENGNEEMAGGFKT- 543
Query: 58 LEQDLPTLRTGS 69
+E DL TL GS
Sbjct: 544 MEMDLSTLENGS 555
>sp|Q8YA32|INLI_LISMO Internalin-I OS=Listeria monocytogenes serovar 1/2a (strain ATCC
BAA-679 / EGD-e) GN=inlI PE=4 SV=1
Length = 1778
Score = 32.3 bits (72), Expect = 3.8, Method: Composition-based stats.
Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 6/167 (3%)
Query: 46 GSEQDLPTLRTGLEQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQD 105
G +LP+L+ Q+ +P LR + G+ LP L++
Sbjct: 516 GKMTELPSLKEFYAQNNSISDISMIHDMPNLRKVDASNNLITNIGTFDNLPKLQSLDVHS 575
Query: 106 LPTLRTGSEQDLPTLRTGSEQDLSTLRTGSEQDLPTLR--TGSGQDLPTLRTGSEQDLPT 163
T DLP+L T + Q G+ +LP L S +P+L DLP
Sbjct: 576 NRITSTSVIHDLPSLETFNAQTNLITNIGTMDNLPDLTYVNLSFNRIPSL--APIGDLPN 633
Query: 164 LRT--GSEQDLPTLRTGSEQDLPTLRMGSEQDLSTLRMGSEQDLSTL 208
L T S+ + G+ +P LR+ Q+ G+E +LS+L
Sbjct: 634 LETLIVSDNNSYLRSLGTMDGVPKLRILDLQNNYLNYTGTEGNLSSL 680
>sp|A7H7J7|SYP_ANADF Proline--tRNA ligase OS=Anaeromyxobacter sp. (strain Fw109-5)
GN=proS PE=3 SV=1
Length = 575
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 123 GSEQDLSTLRTGSEQDL----PTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLPTLRTG 178
GSE +RT + +DL P R + + T R SEQD L + P + T
Sbjct: 207 GSESSEFMVRTDAGEDLVAACPRCRYAANTETATSRLASEQDGAGLPKPEKFATPGVVTI 266
Query: 179 SEQDLPTLRMGSEQDLSTLRMGSEQDLSTLRTGSEQDLSTLRMGSEQDLSTLRTGSEQDL 238
+ P + + + L TL +++ L +Q+L+ ++ + +R +++
Sbjct: 267 EALEQPPYGVAARRQLKTLVYVADEKLVVAVVRGDQELNEAKLQTATGAQVIRPAHPEEI 326
Query: 239 PTL 241
P+L
Sbjct: 327 PSL 329
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.129 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,375,116
Number of Sequences: 539616
Number of extensions: 4986303
Number of successful extensions: 10306
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 9572
Number of HSP's gapped (non-prelim): 476
length of query: 258
length of database: 191,569,459
effective HSP length: 115
effective length of query: 143
effective length of database: 129,513,619
effective search space: 18520447517
effective search space used: 18520447517
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)