Query psy1698
Match_columns 258
No_of_seqs 19 out of 21
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 18:37:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nzc_A Hypothetical protein; s 2.7 3.3E+02 0.011 20.6 0.1 13 241-253 37-49 (86)
2 2wzp_R Lactococcal phage P2 OR 2.2 5E+02 0.017 23.6 0.5 19 2-25 279-297 (375)
3 1jgn_B PAIP2, polyadenylate-bi 1.5 1.9E+03 0.063 13.3 2.3 14 67-80 8-21 (26)
4 3ro2_B Peptide of nuclear mito 1.4 1.2E+03 0.04 14.4 1.1 8 1-8 6-13 (28)
5 2wpv_B Ubiquitin-like protein 1.2 1.2E+03 0.04 16.8 0.9 10 4-13 42-51 (59)
6 3lri_A Protein (insulin-like g 1.1 1.1E+03 0.036 17.8 0.4 9 250-258 54-66 (83)
7 3bbn_M Ribosomal protein S13; 1.0 1.7E+03 0.058 18.2 1.3 30 220-249 104-133 (145)
8 3bod_A Neurexin-1-alpha; neure 0.9 1.3E+03 0.044 17.8 0.4 7 251-257 141-147 (178)
9 1zko_A Glycine cleavage system 0.9 1.2E+03 0.042 18.3 0.3 12 16-27 11-22 (136)
10 1rh7_A Relmbeta, resistin-like 0.9 1.2E+03 0.041 17.7 0.1 9 250-258 39-47 (81)
No 1
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=2.72 E-value=3.3e+02 Score=20.60 Aligned_cols=13 Identities=38% Similarity=0.861 Sum_probs=10.2
Q ss_pred cccCCccccccee
Q psy1698 241 LRMGLPARRRGIT 253 (258)
Q Consensus 241 ~r~~~~~~~~~~~ 253 (258)
-|||+|-+.+++-
T Consensus 37 gRmGiP~~~~~~~ 49 (86)
T 2nzc_A 37 LRVGYPVREENMA 49 (86)
T ss_dssp EEEEEEEGGGTEE
T ss_pred EEcCCCcCcCCce
Confidence 4899998887764
No 2
>2wzp_R Lactococcal phage P2 ORF16; baseplate, viral protein; 2.60A {Lactococcus phage P2} PDB: 2x53_Y 2x54_Y 2x5a_Y
Probab=2.17 E-value=5e+02 Score=23.65 Aligned_cols=19 Identities=47% Similarity=0.718 Sum_probs=14.5
Q ss_pred CCCCCCCceeccCCCCCCcccccC
Q psy1698 2 GSGQDLPTLRTGSGQGLPTLRTGS 25 (258)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~tlr~~~ 25 (258)
|.|.|||.+|+.+ ||-|..
T Consensus 279 gdgtdlpdvrtak-----tlfydr 297 (375)
T 2wzp_R 279 GDGTDLPDVRTAK-----TLFYDR 297 (375)
T ss_dssp SCSTTSCSSCCEE-----EEEECC
T ss_pred CCCCCCccceehh-----heeecc
Confidence 7899999999864 566644
No 3
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=1.46 E-value=1.9e+03 Score=13.26 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=5.9
Q ss_pred CCCCCCCCCccCCC
Q psy1698 67 TGSGQGLPTLRTGS 80 (258)
Q Consensus 67 ~~s~~~~~tlR~g~ 80 (258)
|.-++-+|-++||+
T Consensus 8 p~akef~pgvkygn 21 (26)
T 1jgn_B 8 PNAKEFVPGVKYGN 21 (26)
T ss_dssp TTCCCCCTTSCTTC
T ss_pred cchhhcCCCceecc
Confidence 33344444444443
No 4
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=1.45 E-value=1.2e+03 Score=14.42 Aligned_cols=8 Identities=63% Similarity=0.941 Sum_probs=4.2
Q ss_pred CCCCCCCC
Q psy1698 1 MGSGQDLP 8 (258)
Q Consensus 1 ~~~~~~~~ 8 (258)
||.-||-|
T Consensus 6 mgtcqdep 13 (28)
T 3ro2_B 6 MGTCQDEP 13 (28)
T ss_dssp CCSCCCCC
T ss_pred eccccCCc
Confidence 45555554
No 5
>2wpv_B Ubiquitin-like protein MDY2; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_B
Probab=1.24 E-value=1.2e+03 Score=16.78 Aligned_cols=10 Identities=50% Similarity=0.740 Sum_probs=6.0
Q ss_pred CCCCCceecc
Q psy1698 4 GQDLPTLRTG 13 (258)
Q Consensus 4 ~~~~~~~~~~ 13 (258)
|--||.|+|-
T Consensus 42 gVaLppLkYK 51 (59)
T 2wpv_B 42 GVPLPTLKYK 51 (59)
T ss_dssp CSCCCCCSSC
T ss_pred cccccccccc
Confidence 5556666664
No 6
>3lri_A Protein (insulin-like growth factor I); protein structure, distance geometry; NMR {Homo sapiens} SCOP: g.1.1.1
Probab=1.11 E-value=1.1e+03 Score=17.77 Aligned_cols=9 Identities=44% Similarity=1.077 Sum_probs=5.9
Q ss_pred ccee----eeccC
Q psy1698 250 RGIT----FTGCT 258 (258)
Q Consensus 250 ~~~~----~~~~~ 258 (258)
|||. |-.|+
T Consensus 54 rGIVdECC~~~Cs 66 (83)
T 3lri_A 54 TGIVDECCFRSCD 66 (83)
T ss_dssp TCTTHHHHHTTCC
T ss_pred CCchHHhCCCCCC
Confidence 6887 55554
No 7
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=0.98 E-value=1.7e+03 Score=18.22 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=23.2
Q ss_pred ccCcccccCCccCCCccCCCccccCCcccc
Q psy1698 220 RMGSEQDLSTLRTGSEQDLPTLRMGLPARR 249 (258)
Q Consensus 220 R~~~e~~~~tLr~~~eh~~~t~r~~~~~~~ 249 (258)
|.+..+|++-|+.-..++-=--+.|+|.|-
T Consensus 104 Rr~v~~nIkRL~~I~~YRGlRH~~GLPVRG 133 (145)
T 3bbn_M 104 KRFNRVAIERLKEIRCYRGIRHKLGLPVRG 133 (145)
T ss_dssp CCCCSTTTHHHHCCCCSCCTTTTTTCCSSS
T ss_pred HHHHHHHHHHHhhhceEeeeecccCCcCCC
Confidence 566677888888777777777788999874
No 8
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Probab=0.94 E-value=1.3e+03 Score=17.81 Aligned_cols=7 Identities=43% Similarity=0.762 Sum_probs=5.4
Q ss_pred ceeeecc
Q psy1698 251 GITFTGC 257 (258)
Q Consensus 251 ~~~~~~~ 257 (258)
+.-|.||
T Consensus 141 ~~~F~GC 147 (178)
T 3bod_A 141 GQPFQGQ 147 (178)
T ss_dssp SCBCCEE
T ss_pred CCCCEEE
Confidence 4669999
No 9
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=0.94 E-value=1.2e+03 Score=18.34 Aligned_cols=12 Identities=8% Similarity=0.041 Sum_probs=5.8
Q ss_pred CCCCcccccCCc
Q psy1698 16 QGLPTLRTGSEQ 27 (258)
Q Consensus 16 ~~~~tlr~~~~~ 27 (258)
|-|..|+|+++|
T Consensus 11 ~~~~~~~yt~~H 22 (136)
T 1zko_A 11 HHLKMKKYTKTH 22 (136)
T ss_dssp CCCEEEEECTTS
T ss_pred cccccceeCCCC
Confidence 344445555554
No 10
>1rh7_A Relmbeta, resistin-like beta; hormone, glucose uptake, resistin/FIZZ family, structural genomics, PSI, protein structure initiative; HET: P6G; 3.11A {Mus musculus} SCOP: g.77.1.1
Probab=0.92 E-value=1.2e+03 Score=17.68 Aligned_cols=9 Identities=44% Similarity=1.102 Sum_probs=0.0
Q ss_pred cceeeeccC
Q psy1698 250 RGITFTGCT 258 (258)
Q Consensus 250 ~~~~~~~~~ 258 (258)
.|+..|||+
T Consensus 39 ~G~~vtgCa 47 (81)
T 1rh7_A 39 AGMVVTGCA 47 (81)
T ss_dssp TTCEEEEEE
T ss_pred CccEeeecc
Done!