Query psy1698
Match_columns 258
No_of_seqs 19 out of 21
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 18:37:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1698.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1698hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2outa1 a.140.3.2 (A:94-131) U 3.0 1.3E+02 0.0094 18.2 -0.1 7 249-255 10-16 (38)
2 d2nzca1 d.58.18.14 (A:2-81) Hy 2.8 1.5E+02 0.011 20.5 0.1 13 241-253 34-46 (80)
3 d1yrza1 b.29.1.23 (A:1321-1525 2.6 94 0.0068 22.8 -1.4 35 196-230 133-167 (205)
4 d1iowa1 c.30.1.2 (A:1-96) D-Al 1.8 2.8E+02 0.02 18.9 0.3 7 251-257 80-86 (96)
5 d1cbha_ g.3.8.1 (A:) Cellobioh 1.7 2.8E+02 0.02 16.6 0.1 8 251-258 10-17 (36)
6 d1ehia1 c.30.1.2 (A:3-134) D-a 1.6 3E+02 0.022 19.4 0.3 6 252-257 118-123 (132)
7 d1x62a2 g.39.1.3 (A:8-42) PDZ 1.5 5.1E+02 0.037 15.4 1.1 9 1-9 2-10 (35)
8 d2dg1a1 b.68.6.1 (A:6-324) Lac 1.5 4.2E+02 0.031 20.1 0.9 9 5-13 1-9 (319)
9 d1ixta_ g.3.6.1 (A:) Conotoxin 1.4 2.8E+02 0.021 15.5 -0.3 5 253-257 19-23 (27)
10 d1gtea5 d.58.1.5 (A:845-1017) 1.2 6E+02 0.044 18.5 1.2 27 4-30 7-33 (173)
No 1
>d2outa1 a.140.3.2 (A:94-131) Uncharacterized protein HI1507 in Mu-like prophage FluMu region {Haemophilus influenzae [TaxId: 727]}
Probab=2.95 E-value=1.3e+02 Score=18.21 Aligned_cols=7 Identities=71% Similarity=1.203 Sum_probs=5.4
Q ss_pred ccceeee
Q psy1698 249 RRGITFT 255 (258)
Q Consensus 249 ~~~~~~~ 255 (258)
.|||||.
T Consensus 10 ergitfk 16 (38)
T d2outa1 10 ERGITFK 16 (38)
T ss_dssp HHTCCCS
T ss_pred HcCceee
Confidence 4789885
No 2
>d2nzca1 d.58.18.14 (A:2-81) Hypothetical protein TM1266 {Thermotoga maritima [TaxId: 2336]}
Probab=2.84 E-value=1.5e+02 Score=20.54 Aligned_cols=13 Identities=38% Similarity=0.861 Sum_probs=10.4
Q ss_pred cccCCccccccee
Q psy1698 241 LRMGLPARRRGIT 253 (258)
Q Consensus 241 ~r~~~~~~~~~~~ 253 (258)
.|||+|-+.+|+-
T Consensus 34 gRmGip~~~~~v~ 46 (80)
T d2nzca1 34 LRVGYPVREENMA 46 (80)
T ss_dssp EEEEEEEGGGTEE
T ss_pred EeccCCccccCce
Confidence 4899998888764
No 3
>d1yrza1 b.29.1.23 (A:1321-1525) Beta-D-xylosidase C-terminal domain {Bacillus halodurans [TaxId: 86665]}
Probab=2.58 E-value=94 Score=22.80 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=17.8
Q ss_pred ccccCcccccCCCcCCCcccCCccccCcccccCCc
Q psy1698 196 TLRMGSEQDLSTLRTGSEQDLSTLRMGSEQDLSTL 230 (258)
Q Consensus 196 tlR~~~~~~~~TLr~~~ehd~~tLR~~~e~~~~tL 230 (258)
+||+..+.+.-+..|..+-+.+|.......+++-|
T Consensus 133 ~Lrv~~~~~~~~f~ys~dg~~~w~~~g~~~d~~~l 167 (205)
T d1yrza1 133 YLKGRIHRETMHLYFKQEGEAEWQPVGPTIDVTHM 167 (205)
T ss_dssp EEEEEEETTEEEEEEEETTCSSCEEEEEEEEGGGS
T ss_pred EEEEEEeCCcEEEEEEeCCCcceEEeecccceeee
Confidence 55555544444555555555555555554444444
No 4
>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}
Probab=1.76 E-value=2.8e+02 Score=18.90 Aligned_cols=7 Identities=43% Similarity=1.132 Sum_probs=3.3
Q ss_pred ceeeecc
Q psy1698 251 GITFTGC 257 (258)
Q Consensus 251 ~~~~~~~ 257 (258)
||.||||
T Consensus 80 ~IPytGs 86 (96)
T d1iowa1 80 GLPYTGS 86 (96)
T ss_dssp TCCBSSC
T ss_pred CCCccCC
Confidence 4444444
No 5
>d1cbha_ g.3.8.1 (A:) Cellobiohydrolase I {Trichoderma reesei, ct-cbh I [TaxId: 51453]}
Probab=1.68 E-value=2.8e+02 Score=16.57 Aligned_cols=8 Identities=50% Similarity=0.920 Sum_probs=4.4
Q ss_pred ceeeeccC
Q psy1698 251 GITFTGCT 258 (258)
Q Consensus 251 ~~~~~~~~ 258 (258)
||-|+|+|
T Consensus 10 G~g~~G~T 17 (36)
T d1cbha_ 10 GIGYSGPT 17 (36)
T ss_dssp CTTCCSCC
T ss_pred CCCccCCC
Confidence 55566543
No 6
>d1ehia1 c.30.1.2 (A:3-134) D-alanine:D-lactate ligase VanA, N-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Probab=1.64 E-value=3e+02 Score=19.40 Aligned_cols=6 Identities=17% Similarity=0.567 Sum_probs=2.2
Q ss_pred eeeecc
Q psy1698 252 ITFTGC 257 (258)
Q Consensus 252 ~~~~~~ 257 (258)
|.|+||
T Consensus 118 iPy~G~ 123 (132)
T d1ehia1 118 KPYVGA 123 (132)
T ss_dssp CCBSSC
T ss_pred CCccCC
Confidence 333333
No 7
>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.50 E-value=5.1e+02 Score=15.35 Aligned_cols=9 Identities=44% Similarity=0.914 Sum_probs=4.9
Q ss_pred CCCCCCCCc
Q psy1698 1 MGSGQDLPT 9 (258)
Q Consensus 1 ~~~~~~~~~ 9 (258)
||+.|-||.
T Consensus 2 vg~~qklp~ 10 (35)
T d1x62a2 2 IGNAQKLPM 10 (35)
T ss_dssp CCCCCCCCC
T ss_pred CCccccCcc
Confidence 455555553
No 8
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}
Probab=1.47 E-value=4.2e+02 Score=20.15 Aligned_cols=9 Identities=67% Similarity=0.770 Sum_probs=0.0
Q ss_pred CCCCceecc
Q psy1698 5 QDLPTLRTG 13 (258)
Q Consensus 5 ~~~~~~~~~ 13 (258)
||||++.|.
T Consensus 1 ~~~p~~~~~ 9 (319)
T d2dg1a1 1 QDLPTLFYS 9 (319)
T ss_dssp CCCCBCCSC
T ss_pred CCCCceeec
No 9
>d1ixta_ g.3.6.1 (A:) Conotoxin {Conus gloriamaris, Tx IXa [TaxId: 37336]}
Probab=1.40 E-value=2.8e+02 Score=15.51 Aligned_cols=5 Identities=80% Similarity=1.823 Sum_probs=0.0
Q ss_pred eeecc
Q psy1698 253 TFTGC 257 (258)
Q Consensus 253 ~~~~~ 257 (258)
||-||
T Consensus 19 tfrgc 23 (27)
T d1ixta_ 19 TFRGC 23 (27)
T ss_dssp ETTEE
T ss_pred eeecc
No 10
>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=1.21 E-value=6e+02 Score=18.51 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCCCCceeccCCCCCCcccccCCccCC
Q psy1698 4 GQDLPTLRTGSGQGLPTLRTGSEQDLS 30 (258)
Q Consensus 4 ~~~~~~~~~~~~~~~~tlr~~~~~~~~ 30 (258)
||-.||.+--||.+...+.+.....+.
T Consensus 7 gqs~p~~~~qkgkpV~~i~~~~~k~l~ 33 (173)
T d1gtea5 7 GQSPGTESHQKGKPVPRIAELMGKKLP 33 (173)
T ss_dssp TTBCCCCCEETTEECCCCTTTTTSCCC
T ss_pred CCCCCchhhhCCCCeeeccccccCCcC
Done!