RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1698
         (258 letters)



>gnl|CDD|215109 PLN00410, PLN00410, U5 snRNP protein, DIM1 family; Provisional.
          Length = 142

 Score = 30.9 bits (70), Expect = 0.32
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 161 LPTLRTGSEQDLPTLRTGSEQD-LPTLRMGSEQDLSTLRM 199
           LP L +G   D   L   +E++ L  +R G + D + ++M
Sbjct: 5   LPHLHSGWAVDQAIL---AEEERLVVIRFGHDWDETCMQM 41


>gnl|CDD|144876 pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E domain.  These
           proteins contain several 22 residue repeats which form a
           pair of alpha helices. This family includes:
           Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein
           E.
          Length = 191

 Score = 28.3 bits (64), Expect = 2.6
 Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 11/153 (7%)

Query: 26  EQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDLPTLRTGSGQGLPTLRTGSGQDLP 85
            ++   LR   ++DL  +R   +  L  L+  + Q+L  LR         LR    +D  
Sbjct: 33  SKETEALREELQKDLEDVRARLQPYLDELKAKVGQNLEELRQRLAPYAEELRKRLNRDAE 92

Query: 86  TLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTLRTGSEQDLSTLRTGSEQDLPTLRTG 145
            LR         L   + +    LR    Q++  LR      +  LR    + L  L+  
Sbjct: 93  ELRR-------KLAPYAEE----LRDRLRQNVEALRARLGPYVEELRQKLAERLEELKES 141

Query: 146 SGQDLPTLRTGSEQDLPTLRTGSEQDLPTLRTG 178
            G      +    + +  LR   E     LR  
Sbjct: 142 VGPYAEEYKAQLSEQVEELREKLEPYAEDLREK 174



 Score = 27.2 bits (61), Expect = 8.1
 Identities = 31/131 (23%), Positives = 43/131 (32%)

Query: 4   GQDLPTLRTGSGQGLPTLRTGSEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDLP 63
            +DL  +R      L  L+    Q+L  LR         LR    +D   LR  L     
Sbjct: 44  QKDLEDVRARLQPYLDELKAKVGQNLEELRQRLAPYAEELRKRLNRDAEELRRKLAPYAE 103

Query: 64  TLRTGSGQGLPTLRTGSGQDLPTLRTGSGQGLPTLRTGSGQDLPTLRTGSEQDLPTLRTG 123
            LR    Q +  LR   G  +  LR    + L  L+   G      +    + +  LR  
Sbjct: 104 ELRDRLRQNVEALRARLGPYVEELRQKLAERLEELKESVGPYAEEYKAQLSEQVEELREK 163

Query: 124 SEQDLSTLRTG 134
            E     LR  
Sbjct: 164 LEPYAEDLREK 174


>gnl|CDD|240430 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Provisional.
          Length = 420

 Score = 27.9 bits (62), Expect = 5.4
 Identities = 16/72 (22%), Positives = 20/72 (27%)

Query: 165 RTGSEQDLPTLRTGSEQDLPTLRMGSEQDLSTLRMGSEQDLSTLRTGSEQDLSTLRMGSE 224
           RTGS + +      S         G+ Q  ST   GS     +   G  Q       G  
Sbjct: 332 RTGSSESIRGFTYDSSTTYGGSSYGTSQTDSTSTYGSRSTFDSSTGGGSQSGGGSTYGGS 391

Query: 225 QDLSTLRTGSEQ 236
                   GS  
Sbjct: 392 STFDGSSRGSSD 403



 Score = 27.9 bits (62), Expect = 6.8
 Identities = 16/72 (22%), Positives = 20/72 (27%)

Query: 99  RTGSGQDLPTLRTGSEQDLPTLRTGSEQDLSTLRTGSEQDLPTLRTGSGQDLPTLRTGSE 158
           RTGS + +      S         G+ Q  ST   GS     +   G  Q       G  
Sbjct: 332 RTGSSESIRGFTYDSSTTYGGSSYGTSQTDSTSTYGSRSTFDSSTGGGSQSGGGSTYGGS 391

Query: 159 QDLPTLRTGSEQ 170
                   GS  
Sbjct: 392 STFDGSSRGSSD 403



 Score = 27.5 bits (61), Expect = 7.5
 Identities = 17/85 (20%), Positives = 23/85 (27%)

Query: 154 RTGSEQDLPTLRTGSEQDLPTLRTGSEQDLPTLRMGSEQDLSTLRMGSEQDLSTLRTGSE 213
           RTGS + +      S         G+ Q   T   GS     +   G  Q       G  
Sbjct: 332 RTGSSESIRGFTYDSSTTYGGSSYGTSQTDSTSTYGSRSTFDSSTGGGSQSGGGSTYGGS 391

Query: 214 QDLSTLRMGSEQDLSTLRTGSEQDL 238
                   GS         G +Q +
Sbjct: 392 STFDGSSRGSSDSFGVSYFGPQQTV 416



 Score = 27.5 bits (61), Expect = 8.4
 Identities = 16/72 (22%), Positives = 20/72 (27%)

Query: 11  RTGSGQGLPTLRTGSEQDLSTLRTGSEQDLSTLRTGSEQDLPTLRTGLEQDLPTLRTGSG 70
           RTGS + +      S         G+ Q  ST   GS     +   G  Q       G  
Sbjct: 332 RTGSSESIRGFTYDSSTTYGGSSYGTSQTDSTSTYGSRSTFDSSTGGGSQSGGGSTYGGS 391

Query: 71  QGLPTLRTGSGQ 82
                   GS  
Sbjct: 392 STFDGSSRGSSD 403



 Score = 27.1 bits (60), Expect = 10.0
 Identities = 17/85 (20%), Positives = 23/85 (27%)

Query: 143 RTGSGQDLPTLRTGSEQDLPTLRTGSEQDLPTLRTGSEQDLPTLRMGSEQDLSTLRMGSE 202
           RTGS + +      S         G+ Q   T   GS     +   G  Q       G  
Sbjct: 332 RTGSSESIRGFTYDSSTTYGGSSYGTSQTDSTSTYGSRSTFDSSTGGGSQSGGGSTYGGS 391

Query: 203 QDLSTLRTGSEQDLSTLRMGSEQDL 227
                   GS         G +Q +
Sbjct: 392 STFDGSSRGSSDSFGVSYFGPQQTV 416


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.308    0.129    0.356 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,711,367
Number of extensions: 1200019
Number of successful extensions: 654
Number of sequences better than 10.0: 1
Number of HSP's gapped: 623
Number of HSP's successfully gapped: 17
Length of query: 258
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 163
Effective length of database: 6,723,972
Effective search space: 1096007436
Effective search space used: 1096007436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.7 bits)