BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16981
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 277 bits (709), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 128/147 (87%), Positives = 137/147 (93%)
Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
D+NELNLPKTC F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG YPH+PPKVKCE
Sbjct: 34 DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 93
Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
T VYHPNIDLEGNV LNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct: 94 TMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 153
Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct: 154 RRLFEQNVQRSMRGGYIGSTYFERCLK 180
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 31/45 (68%), Gaps = 7/45 (15%)
Query: 32 NMIKLFSLKQQKKDGENPARPGTQQKKASAAQLRITKA--ELELP 74
+MIKLFSLKQQKK+ E + KKASAAQLRI K EL LP
Sbjct: 2 SMIKLFSLKQQKKEEEKGS-----SKKASAAQLRIQKDINELNLP 41
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 128/147 (87%), Positives = 137/147 (93%)
Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
D+NELNLPKTC F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG YPH+PPKVKCE
Sbjct: 14 DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 73
Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct: 74 TXVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 133
Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
RRLFEQNVQ++ RGGYIGS YFERCLK
Sbjct: 134 RRLFEQNVQRSXRGGYIGSTYFERCLK 160
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 93/149 (62%), Gaps = 6/149 (4%)
Query: 156 DLNELNLPKTCTTE-FPNPDDLL-----SFKLIISPDEGFYRSGKFVFSFKVGPNYPHEP 209
DL+ L+LP T T +PD ++I+ PDEG+Y G F+ YP EP
Sbjct: 37 DLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEP 96
Query: 210 PKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAA 269
PKV C ++HPNIDL+GNVCLNILREDW P L + SI+ GL +LFLEPNP DPLNK+AA
Sbjct: 97 PKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAA 156
Query: 270 EVLQNNRRLFEQNVQKAMRGGYIGSVYFE 298
++L + F + V+ M GG I V ++
Sbjct: 157 KLLCEGEKEFAEAVRLTMSGGSIEHVKYD 185
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 7/137 (5%)
Query: 159 ELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV 218
E NLP TC FP+P+ L F+L ++PDEG+Y+ GKF F +V Y PPKVKC T +
Sbjct: 27 EANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKI 86
Query: 219 YHPNIDLEGNVCLNILRED------WKPVLTINSIVYGLQYLFLE-PNPEDPLNKEAAEV 271
+HPNI G +CL++LRE W P T+ +V+GL LF + N +DPLN EAAE
Sbjct: 87 WHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEH 146
Query: 272 LQNNRRLFEQNVQKAMR 288
++ F V ++
Sbjct: 147 HLRDKEDFRNKVDDYIK 163
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 81/137 (59%), Gaps = 7/137 (5%)
Query: 159 ELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV 218
E NLP TC FP+P+ L F+L ++PDEG+Y+ GKF F +V Y PPKVKC T +
Sbjct: 27 EANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKI 86
Query: 219 YHPNIDLEGNVCLNILRED------WKPVLTINSIVYGLQYLFLE-PNPEDPLNKEAAEV 271
+HPNI G +CL++LRE W P T+ +V+GL LF + N +DPLN EAAE
Sbjct: 87 WHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEH 146
Query: 272 LQNNRRLFEQNVQKAMR 288
++ F V ++
Sbjct: 147 HLRDKEDFRNKVDDYIK 163
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
L+DL + P + ++ P DDL ++ I+ P + Y G F S +YP +PPKV
Sbjct: 10 LADLGKD--PPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKV 67
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR+ W P LTI+ ++ + L +PNP+DPL E A V
Sbjct: 68 NFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHVY 127
Query: 273 QNNRRLFEQNVQKAMR 288
+ +R +E + ++ R
Sbjct: 128 KTDRSRYELSAREWTR 143
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Query: 156 DLNELNL-PKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVK 213
+LN+L+ P T + P DD+ ++ I+ P++ Y G F + +YP +PPKV
Sbjct: 29 ELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVN 88
Query: 214 CETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQ 273
T +YHPNI+ +G +CL+IL++ W P LTI+ ++ + L +PNP+DPL E A + +
Sbjct: 89 FTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYK 148
Query: 274 NNRRLFEQNVQK 285
++R ++Q ++
Sbjct: 149 SDRMRYDQTARE 160
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
Query: 163 PKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
P + P D++L+++ II P E + G F S + YP++PP VK + ++HP
Sbjct: 23 PPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHP 82
Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ 281
N+ +G++CL+IL+ W P + +I+ +Q L EPNP P N AA++ Q NRR +E+
Sbjct: 83 NVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEK 142
Query: 282 NVQKAMRGGYI 292
VQ+ + ++
Sbjct: 143 RVQQIVEQSWL 153
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
Query: 163 PKTCTTEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
P + P D++L+++ II P E + G F S + YP++PP VK + ++HP
Sbjct: 20 PPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHP 79
Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ 281
N+ +G++CL+IL+ W P + +I+ +Q L EPNP P N AA++ Q NRR +E+
Sbjct: 80 NVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEK 139
Query: 282 NVQKAMRGGYI 292
VQ+ + ++
Sbjct: 140 RVQQIVEQSWL 150
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
L DL + P C+ P DDL ++ I+ P E Y+ G F + +YP +PPKV
Sbjct: 13 LQDLGR-DPPAQCSAG-PVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKV 70
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 71 AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 130
Query: 273 QNNRRLFEQ 281
+ +R + Q
Sbjct: 131 KTDRERYNQ 139
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 77/133 (57%), Gaps = 3/133 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
LSDL E + P +C+ P DDL ++ I+ P + Y G F S +YP +PPK+
Sbjct: 11 LSDL-ERDPPTSCSAG-PVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKI 68
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ GN+CL+IL++ W P LT++ ++ + L + NP+DPL E A +
Sbjct: 69 SFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIY 128
Query: 273 QNNRRLFEQNVQK 285
+ +R +E ++
Sbjct: 129 KTDRPKYEATARE 141
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 19 ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 77
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 78 AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 137
Query: 273 QNNRRLFEQ 281
Q +R + +
Sbjct: 138 QTDREKYNR 146
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 174 DDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLN 232
DD+ + I+ PD+ Y+ G F +YP + P+V T VYHPNI+ G +CL+
Sbjct: 31 DDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLD 90
Query: 233 ILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMR 288
IL++ W P LT++ ++ + L +PNP DPL+ E A VL+ N++ FE ++ R
Sbjct: 91 ILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTR 146
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 14 ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 72
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 73 AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 132
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 133 KTDREKYNR 141
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
LSDL + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 12 LSDLAR-DPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 70 AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 130 KTDRDKYNR 138
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
LSDL + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 20 LSDLAR-DPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 77
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 78 AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 137
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 138 KTDRDKYNR 146
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
LSDL + P C+ P DDL ++ I+ P + Y+ G F + +YP +PPK+
Sbjct: 16 LSDLQR-DPPAHCSAG-PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKI 73
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LT++ ++ + L +PNP+DPL + A++
Sbjct: 74 AFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIY 133
Query: 273 QNNRRLFEQNVQK 285
++++ + ++ ++
Sbjct: 134 KSDKEKYNRHARE 146
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 11 ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 70 AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 130 KTDREKYNR 138
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
LSDL + P C+ P DDL ++ I+ P + Y+ G F + +YP +PPK+
Sbjct: 12 LSDLQR-DPPAHCSAG-PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKI 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LT++ ++ + L +PNP+DPL + A++
Sbjct: 70 AFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIY 129
Query: 273 QNNRRLFEQNVQK 285
++++ + ++ ++
Sbjct: 130 KSDKEKYNRHARE 142
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 11 ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 70 AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 130 KTDREKYNR 138
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 27 ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 85
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 86 AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 145
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 146 KTDREKYNR 154
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 79/133 (59%), Gaps = 3/133 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
LSDL + P C+ P DDL ++ I+ P + Y+ G F + +YP +PPK+
Sbjct: 28 LSDLQR-DPPAHCSAG-PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKI 85
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LT++ ++ + L +PNP+DPL + A++
Sbjct: 86 AFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIY 145
Query: 273 QNNRRLFEQNVQK 285
++++ + ++ ++
Sbjct: 146 KSDKEKYNRHARE 158
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
LSDL + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 18 LSDLAR-DPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 75
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 76 AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 135
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 136 KTDRDKYNR 144
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
LSDL + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 9 LSDLAR-DPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 66
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 67 AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 126
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 127 KTDRDKYNR 135
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 9 ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 67
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 68 AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 127
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 128 KTDREKYNR 136
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 11 ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 70 AFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 130 KTDREKYNR 138
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 8/142 (5%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 11 ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++ L+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 70 AFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129
Query: 273 QNNR----RLFEQNVQKAMRGG 290
+ +R R+ + QK GG
Sbjct: 130 KTDREKYNRIAREWTQKYAMGG 151
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 1/108 (0%)
Query: 168 TEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE 226
T FP+ D+L + + P + Y S K+ + + +YP++PP VK TP +HPN+D
Sbjct: 30 TAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQS 89
Query: 227 GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQN 274
GN+CL+IL+E+W + +I+ LQ L EPN PLN +AA++ N
Sbjct: 90 GNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWSN 137
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLI-ISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C+ P DD+ ++ + P++ Y+ G F + +YP +PPKV
Sbjct: 11 ELNDLARDPPAQCSAG-PVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 70 AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 130 KTDREKYNR 138
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 77/137 (56%), Gaps = 7/137 (5%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
L DL + P C+ P DDL ++ I+ P + Y+ G F + +YP +PPKV
Sbjct: 15 LQDLQR-DPPAQCSAG-PVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKV 72
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LT++ ++ + L +PNP+DPL + A +
Sbjct: 73 AFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAHIY 132
Query: 273 QNNR----RLFEQNVQK 285
++++ RL + QK
Sbjct: 133 KSDKEKYNRLAREWTQK 149
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 11 ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ LR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 70 AFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 130 KTDREKYNR 138
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 12 ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 70
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++ L+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 71 AFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 130
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 131 KTDREKYNR 139
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
LSDL + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 10 LSDLAR-DPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 67
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++ L+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 68 AFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 127
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 128 KTDRDKYNR 136
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 27 ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 85
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++ L+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 86 AFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 145
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 146 KTDREKYNR 154
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 77/133 (57%), Gaps = 3/133 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
LSDL + P C P DDL ++ I+ P + Y+ G F + +YP +PPK+
Sbjct: 16 LSDLQR-DPPAHCRAG-PVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKI 73
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++ L+ILR W P LT++ ++ + L +PNP+DPL + A++
Sbjct: 74 AFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIY 133
Query: 273 QNNRRLFEQNVQK 285
++++ + ++ ++
Sbjct: 134 KSDKEKYNRHARE 146
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 67/118 (56%)
Query: 176 LLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILR 235
+L +I PD+ + G F S + +YP++PP V+ + ++HPNI +G++CL+IL+
Sbjct: 34 MLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 93
Query: 236 EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIG 293
W P+ + +I+ +Q L +PNP P N EAA + ++R + + V+ + +
Sbjct: 94 NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 158 NELNLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCET 216
N N P P P++ F ++I+ PD Y G + + YP EPPKV+ T
Sbjct: 12 NLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLT 71
Query: 217 PVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNR 276
+YHPNID G +CL+IL++ W P L I +++ +Q L P P+DPL+ + AE + ++
Sbjct: 72 KIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDK 131
Query: 277 RLFEQ 281
E
Sbjct: 132 NDAEH 136
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Query: 158 NELNLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCET 216
N N P P P++ F ++I+ PD Y G + + YP EPPKV+ T
Sbjct: 12 NLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLT 71
Query: 217 PVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNR 276
+YHPNID G +CL+IL++ W P L I +++ +Q L P P+DPL+ + AE + ++
Sbjct: 72 KIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDK 131
Query: 277 RLFEQ 281
E
Sbjct: 132 NDAEH 136
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C+ P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 8 ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 66
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++ L+ILR W P L I+ ++ + L +PNP+DPL E A +
Sbjct: 67 AFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEIARIY 126
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 127 KTDREKYNR 135
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 163 PKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
P T P+ D+L F++ I P++ Y G F + +YP E PKV+ T +YHP
Sbjct: 19 PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHP 78
Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAE 270
NID G +CL++L+ +W P L I +++ +Q L PNP DPL + AE
Sbjct: 79 NIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 163 PKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
P T P+ D+L F++ I P++ Y G F + +YP E PKV+ T +YHP
Sbjct: 21 PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHP 80
Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAE 270
NID G +CL++L+ +W P L I +++ +Q L PNP DPL + AE
Sbjct: 81 NIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 129
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 190 YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE-GNVCLNILREDWKPVLTINSIV 248
Y G F + P+YP+ PPK+K T ++HPNI + G +CL+IL+ +W P LTI + +
Sbjct: 89 YEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTAL 148
Query: 249 YGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
+Q + +P P DP + E A+++ N LF Q +
Sbjct: 149 LSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAK 184
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 163 PKTCTTEFPNPDDLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
P + P+ ++++ + +I EG + G F + YP++PP V+ + ++HP
Sbjct: 20 PPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHP 79
Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQ 281
N+ +G++CL+IL+ W P ++SI+ +Q L EPNP P N +AA++ Q N+R +E+
Sbjct: 80 NVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEK 139
Query: 282 NVQKAMRGGYIGS 294
V + + S
Sbjct: 140 RVSAIVEQSWNDS 152
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C P DD+ ++ I+ P++ Y+ G F + +YP +PPKV
Sbjct: 9 ELNDLARDPPAQCRAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 67
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHP I+ G++ L+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 68 AFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 127
Query: 273 QNNRRLFEQ 281
+ +R + +
Sbjct: 128 KTDREKYNR 136
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 166 CTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID 224
T EF + D+ K + P Y GKFV +V YP +PPK++ +T VYHPNI
Sbjct: 22 ITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81
Query: 225 -LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNV 283
+ G +CL+ILR W PV+T+ S + LQ L P P DP + E A+ +R F +
Sbjct: 82 SVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTA 141
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 166 CTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID 224
T EF + D+ K + P Y GKFV +V YP +PPK++ +T VYHPNI
Sbjct: 21 ITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 80
Query: 225 -LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNV 283
+ G +CL+IL+ W PV+T+ S + LQ L P P DP + E A+ +R F +
Sbjct: 81 SVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTA 140
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
NPD +L++++ I +G + G F +YP PPK K E P++HPN+ G
Sbjct: 34 NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSG 93
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
VCL+IL E DW+P +TI I+ G+Q L EPN +DP EA + NR +E+ V+
Sbjct: 94 TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Query: 171 PNPDDLLSF-KLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV 229
P PD+++ + +II P + Y G F + YP++PP VK + ++HPN+ G +
Sbjct: 28 PLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEI 87
Query: 230 CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRG 289
CL+IL+ W P + SI+ +Q LF +PNP P N EAA + ++++ + + V++ +
Sbjct: 88 CLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEK 147
Query: 290 GY 291
+
Sbjct: 148 SW 149
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE-GNVCLNILREDWK 239
I P+ Y G F + + +YP+ PPK+K T ++HPNI + G +CL++L+ +W
Sbjct: 58 FIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWS 117
Query: 240 PVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF 279
P LTI + + +Q L +P P+DP + E A++ + N LF
Sbjct: 118 PALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALF 157
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
NPD +L++++ I +G + G F +YP PPK K E P++HPN+ G
Sbjct: 32 NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 91
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
VCL+IL E DW+P +TI I+ G+Q L EPN +DP EA + NR +E+ V+
Sbjct: 92 TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 150
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
NPD +L++++ I +G + G F +YP PPK K E P++HPN+ G
Sbjct: 34 NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 93
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
VCL+IL E DW+P +TI I+ G+Q L EPN +DP EA + NR +E+ V+
Sbjct: 94 TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
NPD +L++++ I +G + G F +YP PPK K E P++HPN+ G
Sbjct: 33 NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 92
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
VCL+IL E DW+P +TI I+ G+Q L EPN +DP EA + NR +E+ V+
Sbjct: 93 TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
NPD +L++++ I +G + G F +YP PPK K E P++HPN+ G
Sbjct: 36 NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 95
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
VCL+IL E DW+P +TI I+ G+Q L EPN +DP EA + NR +E+ V+
Sbjct: 96 TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 154
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
Query: 168 TEFPNPDDLLSFKLIISPDEG-FYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE 226
+ FP D+L + I G Y ++ S + YP+ P VK TP YHPN+D +
Sbjct: 51 SAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQ 110
Query: 227 GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQN 274
GN+ L+IL+E W + + +I+ +Q L EPN + PLN AAE+ +N
Sbjct: 111 GNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKN 158
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 163 PKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
P T P+ D+L F++ I P++ Y G F + +YP E PKV+ T +YHP
Sbjct: 19 PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHP 78
Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAE 270
NID G + L++L+ +W P L I +++ +Q L PNP DPL + AE
Sbjct: 79 NIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
NPD +L++++ I +G + G F +YP PPK K E P++HPN+ G
Sbjct: 31 NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 90
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
VCL+IL E DW+P +TI I+ G+Q L EPN +DP EA + NR +E+ V+
Sbjct: 91 TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
NPD +L++++ I +G + G F +YP PPK K E P++HPN+ G
Sbjct: 33 NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 92
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
VCL+IL E DW+P +TI I+ G+Q L EPN +DP EA + NR +E+ V+
Sbjct: 93 TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 170 FPNPDDLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGN 228
FPN +DL ++ I EG Y G F +G ++P PPK T ++HPN+ G
Sbjct: 36 FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGE 95
Query: 229 VCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKA 286
+C+N+L+ DW L I ++ ++ L + PNPE LN+EA +L N +E+ +A
Sbjct: 96 ICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN---YEEYAARA 150
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 171 PNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV 229
P+ + F ++I+ P + + G F + YP PKV+ T +YHPN+D G +
Sbjct: 29 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 88
Query: 230 CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
CL+IL++ W P L I +++ +Q L PNP+DPL + AE + N
Sbjct: 89 CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN 134
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 160 LNLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV 218
L+ P C+ P D++ ++ I+ P Y G F P+YP +PPKV T +
Sbjct: 17 LDPPPNCSAG-PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRI 75
Query: 219 YHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNR 276
YH NI+ +G +CL+IL+++W P LTI+ ++ + L + NP DPL A NR
Sbjct: 76 YHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNR 133
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 171 PNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV 229
P+ + F ++I+ P + + G F + YP PKV+ T +YHPN+D G +
Sbjct: 30 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 89
Query: 230 CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
CL+IL++ W P L I +++ +Q L PNP+DPL + AE + N
Sbjct: 90 CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN 135
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 171 PNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV 229
P+ + F ++I+ P + + G F + YP PKV+ T +YHPN+D G +
Sbjct: 27 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 86
Query: 230 CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
CL+IL++ W P L I +++ +Q L PNP+DPL + AE + N
Sbjct: 87 CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN 132
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKP 240
+I P + + G F + YP PKV+ T +YHPN+D G +CL+IL++ W P
Sbjct: 43 VIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSP 102
Query: 241 VLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
L I +++ +Q L PNP+DPL + AE + N
Sbjct: 103 ALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN 137
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 171 PNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV 229
P+ + F ++I+ P + + G F + YP PKV+ T +YHPN+D G +
Sbjct: 25 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRI 84
Query: 230 CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
CL+IL++ W P L I +++ +Q L PNP+DPL + AE + N
Sbjct: 85 CLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTN 130
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Query: 175 DLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL 234
+LL+++ +I PD Y G F YP +PPK+ +T +YHPNID +G VCL ++
Sbjct: 33 NLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVI 92
Query: 235 R-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
E+WKP + ++ L L +P PE PL + AE +R+ F +N ++
Sbjct: 93 SAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEE 144
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
Query: 175 DLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL 234
+LL+++ +I PD Y G F YP +PPK+ +T +YHPNID +G VCL ++
Sbjct: 31 NLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVI 90
Query: 235 R-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
E+WKP + ++ L L +P PE PL + AE +R+ F +N ++
Sbjct: 91 SAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEE 142
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
NPD +L++++ I +G + G F +YP PPK K E P++HP + G
Sbjct: 34 NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSG 93
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
VCL+IL E DW+P +TI I+ G+Q L EPN +DP EA + NR +E+ V+
Sbjct: 94 TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
L+D+ L+ P C+ P D++ ++ I+ P Y G F P YP +PPKV
Sbjct: 57 LADIT-LDPPPNCSAG-PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKV 114
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YH NI+ +G +CL+IL+++W P LTI+ ++ + L + NP DPL A
Sbjct: 115 TFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY 174
Query: 273 QNNR 276
NR
Sbjct: 175 MTNR 178
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
NPD +L++++ I +G + G F +YP PPK K E P++HPN+ G
Sbjct: 34 NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 93
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
VCL+IL E DW+P +TI I+ G+Q L EPN + P EA + NR +E+ V+
Sbjct: 94 TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 163 PKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
P T P+ D+L F++ I P++ Y G F + +YP E PKV+ T +YHP
Sbjct: 19 PVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHP 78
Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAE 270
ID G + L++L+ +W P L I +++ +Q L PNP DPL + AE
Sbjct: 79 AIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAE 127
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 190 YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL----REDWKPVLTIN 245
Y G F + YP EPP+++ TP+YHPNID G +CL++L + W+P L I
Sbjct: 48 YEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIA 107
Query: 246 SIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
+++ +Q L EPNP+DPL + + + N+ F +N ++
Sbjct: 108 TVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQ 147
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
NPD +L++++ I +G + G F +YP PPK K E P++HPN+ G
Sbjct: 34 NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 93
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
VCL+IL E DW+P +TI I+ G+Q L EPN + P EA + NR +E+ V+
Sbjct: 94 TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
NPD +L++++ I +G + G F +YP PPK K E P++HPN+ G
Sbjct: 31 NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 90
Query: 228 NVCLNILRED--WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
V L+IL ED W+P +TI I+ G+Q L EPN +DP EA + NR +E+ V+
Sbjct: 91 TVXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVR 149
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Query: 172 NPD---DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
NPD +L++++ I +G + G F +YP PPK K E P++HPN+ G
Sbjct: 31 NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 90
Query: 228 NVCLNILRED--WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
V L+IL ED W+P +TI I+ G+Q L EPN +DP EA + NR +E+ V+
Sbjct: 91 TVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 13/121 (10%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL------ 234
L+I P + Y G F +YP +PPK+K + ++HPNID EGNVC++IL
Sbjct: 39 LVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDD 98
Query: 235 -------REDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAM 287
E W PV T+ +I+ + + +PN E P N +AA++ + N F++ V + +
Sbjct: 99 KWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCV 158
Query: 288 R 288
R
Sbjct: 159 R 159
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 175 DLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL 234
++L + ++ PD+ Y F P YP +PP +K T +YHPN+D G +CL I+
Sbjct: 33 NVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPII 92
Query: 235 -REDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK-AMRGG 290
E+WKP ++ L L PN +PL + A++L N LF +N ++ +R G
Sbjct: 93 SSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFG 150
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 175 DLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL 234
++L + ++ PD+ Y F P YP +PP +K T +YHPN+D G +CL I+
Sbjct: 30 NVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPII 89
Query: 235 -REDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK-AMRGG 290
E+WKP ++ L L PN +PL + A++L N LF +N ++ +R G
Sbjct: 90 SSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFG 147
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 175 DLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNI 233
DL+++K+ I + + G + + YP PPK + P++HPN+ G VCL+I
Sbjct: 43 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 102
Query: 234 LRED--WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMR 288
L E+ WKP +TI I+ G+Q L +PN P EA + + ++ +E+ V+ R
Sbjct: 103 LNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQAR 159
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 175 DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNI 233
DL ++ I EG + G + + + YP +PPKVK YHPN+ G +CL+I
Sbjct: 39 DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSI 98
Query: 234 LRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNV 283
L E DW+P +T+ IV G+Q L PNP P + A N+ +++ V
Sbjct: 99 LNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 150
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 175 DLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNI 233
DL ++ I EG + G + + + YP +PPKVK YHPN+ G +CL+I
Sbjct: 37 DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSI 96
Query: 234 LRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNV 283
L E DW+P +T+ IV G+Q L PNP P + A N+ +++ V
Sbjct: 97 LNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 148
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL------ 234
LII P + Y G F +YP PPK+K T ++HPN+D G+VC++IL
Sbjct: 53 LIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGED 112
Query: 235 -------REDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNR 276
E W P+ T+ +I+ + + +PN + P N +AA+ + +R
Sbjct: 113 KYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDR 161
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 182 IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCLNILREDWKP 240
I P + Y G++ K+ YP PPKV+ T ++HPNI + G +CL+IL++ W
Sbjct: 60 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 119
Query: 241 VLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
+T+ +++ LQ L P+DP + A + N +F+Q +
Sbjct: 120 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 163
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 182 IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCLNILREDWKP 240
I P + Y G++ K+ YP PPKV+ T ++HPNI + G +CL+IL++ W
Sbjct: 96 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 155
Query: 241 VLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
+T+ +++ LQ L P+DP + A + N +F+Q +
Sbjct: 156 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 199
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 182 IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCLNILREDWKP 240
I P + Y G++ K+ YP PPKV+ T ++HPNI + G +CL+IL++ W
Sbjct: 45 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 104
Query: 241 VLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
+T+ +++ LQ L P+DP + A + N +F+Q +
Sbjct: 105 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 148
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 182 IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCLNILREDWKP 240
I P + Y G++ K+ YP PPKV+ T ++HPNI + G +CL+IL++ W
Sbjct: 47 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 106
Query: 241 VLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
+T+ +++ LQ L P+DP + A + N +F+Q +
Sbjct: 107 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 150
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 182 IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCLNILREDWKP 240
I P + Y G++ K+ YP PPKV+ T ++HPNI + G +CL+IL++ W
Sbjct: 44 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAA 103
Query: 241 VLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
+T+ +++ LQ L P+DP + A + N +F+Q +
Sbjct: 104 AMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 147
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Query: 185 PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCLNILREDWKPVLT 243
P+ Y G + + +YP P + + HPN+D G+VCL+++ + W P+ +
Sbjct: 38 PNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYS 97
Query: 244 -INSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMR 288
+N L L PNP DPLN +AA +L ++ ++E+ V++ ++
Sbjct: 98 LVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVK 143
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 21/126 (16%)
Query: 181 LIISPDEGFYRSGKF--VFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILR--- 235
LI+ P++ + G F + SF + +YP PPK++ ++HPNI +G VC++IL
Sbjct: 43 LIMGPEDTCFEFGVFPAILSFPL--DYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPG 100
Query: 236 ----------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF----EQ 281
E W PV ++ I+ + + EPN E N +A+++ +++R F +Q
Sbjct: 101 DDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 160
Query: 282 NVQKAM 287
VQK++
Sbjct: 161 IVQKSL 166
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 21/126 (16%)
Query: 181 LIISPDEGFYRSGKF--VFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILR--- 235
LI+ P++ + G F + SF + +YP PPK++ ++HPNI +G VC++IL
Sbjct: 45 LIMGPEDTCFEFGVFPAILSFPL--DYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPG 102
Query: 236 ----------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF----EQ 281
E W PV ++ I+ + + EPN E N +A+++ +++R F +Q
Sbjct: 103 DDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 162
Query: 282 NVQKAM 287
VQK++
Sbjct: 163 IVQKSL 168
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 21/126 (16%)
Query: 181 LIISPDEGFYRSGKF--VFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILR--- 235
LI+ P++ + G F + SF + +YP PPK++ ++HPNI +G VC++IL
Sbjct: 42 LIMGPEDTCFEFGVFPAILSFPL--DYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPG 99
Query: 236 ----------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF----EQ 281
E W PV ++ I+ + + EPN E N +A+++ +++R F +Q
Sbjct: 100 DDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 159
Query: 282 NVQKAM 287
VQK++
Sbjct: 160 IVQKSL 165
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 21/126 (16%)
Query: 181 LIISPDEGFYRSGKF--VFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILR--- 235
LI+ P++ + G F + SF + +YP PPK++ ++HPNI +G VC++IL
Sbjct: 39 LIMGPEDTCFEFGVFPAILSFPL--DYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPG 96
Query: 236 ----------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF----EQ 281
E W PV ++ I+ + + EPN E N +A+++ +++R F +Q
Sbjct: 97 DDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQ 156
Query: 282 NVQKAM 287
VQK++
Sbjct: 157 IVQKSL 162
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 185 PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCLNILREDWKPVLT 243
P+ Y G ++ ++ +YP + P + + HPN+D G+VCL+++ + W P+
Sbjct: 47 PEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQ 106
Query: 244 INSIV-YGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 280
+ +I L L PNP DPLN +AA +L +R F+
Sbjct: 107 LENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFD 144
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL------ 234
LI P + Y G F + +YP PPK+ + HPNI G VC++IL
Sbjct: 40 LIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDD 99
Query: 235 -------REDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAM 287
E W PV ++ I+ + + EPN E N +A + ++NR FE+ V+ ++
Sbjct: 100 PNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI 159
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 175 DLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNI 233
DL ++++ I P +Y G F K +YP+ PP + T ++HPNI G+VC++I
Sbjct: 36 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 95
Query: 234 LR-------------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAA 269
L E W P + +I+ + L EPN P N +A+
Sbjct: 96 LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDAS 144
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 175 DLLSFKL-IISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNI 233
DL ++++ I P +Y G F K +YP+ PP + T ++HPNI G+VC++I
Sbjct: 33 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 92
Query: 234 LR-------------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAA 269
L E W P + +I+ + L EPN P N +A+
Sbjct: 93 LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDAS 141
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 190 YRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCLNILREDWKPVLTINSIV 248
Y G + + YP + P + ++HPNID G VCL+++ + W + + +I
Sbjct: 65 YEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIF 124
Query: 249 YG-LQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGGYIGSVYFERCLK 302
L L PNP DPLN +AA + + ++Q +++ YI E LK
Sbjct: 125 ESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKE-----YIQKYATEEALK 174
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 175 DLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVK-CETPVYHPNI-DLEGNVCL 231
DL ++ IIS P + Y + +F +V +YP PPK+ + + H N+ G +CL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICL 105
Query: 232 NILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQ 273
NIL+ E+W PV + V+ + L EP + PL+ + +++
Sbjct: 106 NILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIR 148
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 175 DLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVK-CETPVYHPNI-DLEGNVCL 231
DL ++ IIS P + Y + +F +V +YP PPK+ + + H N+ G +CL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 232 NILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQ 273
NIL+ E+W PV + V+ + L EP + PL+ + +++
Sbjct: 106 NILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIR 148
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 175 DLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVK-CETPVYHPNI-DLEGNVCL 231
DL ++ IIS P + Y + +F +V +YP PPK+ + + H N+ G +CL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 232 NILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQ 273
NIL+ E+W PV + V+ + L EP + PL+ + +++
Sbjct: 106 NILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIR 148
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 168 TEFPNPDDLLSFKLIISP-DEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE 226
T P +D++ +++ I ++ F + Y + PP VK T +HPN+D
Sbjct: 44 TAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPH 103
Query: 227 -GNVCLNILR--EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF 279
G C++ L E W T++SI+ LQ + P E+P+N EAA +L + L+
Sbjct: 104 TGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLY 159
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 189 FYRSGKFVFSFKVGPNYPHEPPKV--KCETPVYHPNIDLEGNVCLNILREDWKPVLTINS 246
Y KF FK YP + P+V E HP++ G++CL+IL EDW P L++ S
Sbjct: 67 LYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQS 126
Query: 247 IVYGL 251
+ +
Sbjct: 127 VCLSI 131
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 182 IISPDEGFYRSGKFVFSFKV--GPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWK 239
+ +P + Y + V +YPHEPP V+ TPVY P + EG +C ++ + W
Sbjct: 56 VKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWT 115
Query: 240 PVLTINSIV-YGLQYLF--LEPNPEDPLNKEAAEVLQNNRRLFEQNVQKAMRGG 290
P + ++ L +F + +D +N EA L+ F Q+ +R G
Sbjct: 116 PDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEK----FPQDFAARVRRG 165
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 163 PKTCTTEFPNPDDLLSFK---LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV----KCE 215
P++C+ + DD+ K I+ P + + + S GPNYP PPKV K
Sbjct: 23 PESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN 82
Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEP 258
P +P E + LR DWK T+ +++ L+ P
Sbjct: 83 LPCVNPTTG-EVQTDFHTLR-DWKRAYTMETLLLDLRKEMATP 123
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 163 PKTCTTEFPNPDDLLSFK---LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV----KCE 215
P++C+ + DD+ K I+ P + + + S GPNYP PPKV K
Sbjct: 24 PESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN 83
Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEP 258
P +P E + LR DWK T+ +++ L+ P
Sbjct: 84 LPCVNPTTG-EVQTDFHTLR-DWKRAYTMETLLLDLRKEMATP 124
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYH-----PNIDLEGNVCLNIL- 234
LI P + Y +G F F +YP PP V ET H PN+ +G VCL+IL
Sbjct: 115 LITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILN 174
Query: 235 ------REDWKP--------VLTINSIVYGLQYLFLEPNPE 261
E W P ++++ S++ + F EP E
Sbjct: 175 TWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYE 215
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 197 FSFKVGPNYPHEPPKVKCETPVYHPNIDLEGN-VCLNIL-REDWKPVLTINSIV 248
FSFK N+P +PP V+ +PV L G +C+ +L ++ W +I S++
Sbjct: 74 FSFK--DNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVI 125
>pdb|1ZUO|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
pdb|1ZUO|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme (Ubci)
Involved In Embryo Attachment And Implantation
Length = 186
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 197 FSFKVGPNYPHEPPKVKCETPVYHPNIDLEGN-VCLNIL-REDWKPVLTINSIV 248
FSFK N+P +PP V+ PV L G +C+ +L ++ W +I S++
Sbjct: 95 FSFK--DNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVI 146
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 204 NYPHEPPKVKCETPVYHPNIDLEGNVCLNILR--EDWKPVLTINSIVYGLQYLFLEPNPE 261
NYP PP VK +T + +D G V N L ++W TI +I+ L+ L +
Sbjct: 83 NYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANK 142
Query: 262 DPLNKEAAEVLQNN 275
EV NN
Sbjct: 143 RLPQPNEGEVYSNN 156
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 204 NYPHEPPKVKCETPVYHPNIDLEGNVCLNILR--EDWKPVLTINSIVYGLQYLFL 256
NYP PP VK +T + +D G V N L ++W TI +I+ L+ L
Sbjct: 87 NYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEML 141
>pdb|1TT5|E Chain E, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|F Chain F, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 26
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 33 MIKLFSLKQQKKDGENPARPGTQQKK 58
MIKLFSLKQQKK+ E+ KK
Sbjct: 1 MIKLFSLKQQKKEEESAGGTKGSSKK 26
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV----CLNILRE 236
+II P Y + + + GP YP PP V+ T + ++ V +++L +
Sbjct: 74 MIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK 133
Query: 237 DWKPVLTINSIVYGLQYLFL 256
W+ +I ++ L+ L +
Sbjct: 134 -WQNSYSIKVVLQELRRLMM 152
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV----CLNILRE 236
+II P Y + + + GP YP PP V+ T + ++ V +++L +
Sbjct: 64 MIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK 123
Query: 237 DWKPVLTINSIVYGLQYLFL 256
W+ +I ++ L+ L +
Sbjct: 124 -WQNSYSIKVVLQELRRLMM 142
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV 218
+II P Y + + + GP YP PP V+ T +
Sbjct: 49 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 86
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV 218
+II P Y + + + GP YP PP V+ T +
Sbjct: 43 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 80
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV----CLNILRE 236
+I+ P Y + + + GP YP PP V+ T + ++ V +++L +
Sbjct: 46 MILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK 105
Query: 237 DWKPVLTINSIVYGLQYLFL 256
W+ +I ++ L+ L +
Sbjct: 106 -WQNSYSIKVVLQELRRLMM 124
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV 218
+II P Y + + + GP YP PP V+ T +
Sbjct: 44 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 81
>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
Length = 584
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 155 SDLNELNLPKTCT-TEFPNPDDLLSFKLIIS 184
SD ++L K CT E+P PD +SF L+ S
Sbjct: 458 SDSDQLKPAKDCTPIEYPKPDGQISFDLLSS 488
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 181 LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV 218
+II P Y + + + GP YP PP V+ T +
Sbjct: 54 MIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 91
>pdb|3TDU|E Chain E, N-Terminal Acetylation Acts As An Avidity Enhancer
Within An Interconnected Multiprotein Complex:
Structure Of A Human Cul1whb- Dcn1p-Acetylated Ubc12n
Complex
pdb|3TDU|F Chain F, N-Terminal Acetylation Acts As An Avidity Enhancer
Within An Interconnected Multiprotein Complex:
Structure Of A Human Cul1whb- Dcn1p-Acetylated Ubc12n
Complex
Length = 16
Score = 27.7 bits (60), Expect = 8.4, Method: Composition-based stats.
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 33 MIKLFSLKQQKKDGE 47
MIKLFSLKQQKK+ E
Sbjct: 2 MIKLFSLKQQKKEEE 16
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,880,092
Number of Sequences: 62578
Number of extensions: 423447
Number of successful extensions: 946
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 120
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)