RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16981
(302 letters)
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 244 bits (624), Expect = 4e-82
Identities = 129/147 (87%), Positives = 138/147 (93%)
Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
D+NELNLPKTC F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG YPH+PPKVKCE
Sbjct: 14 DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 73
Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct: 74 TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 133
Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct: 134 RRLFEQNVQRSMRGGYIGSTYFERCLK 160
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 240 bits (615), Expect = 1e-80
Identities = 128/147 (87%), Positives = 137/147 (93%)
Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
D+NELNLPKTC F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG YPH+PPKVKCE
Sbjct: 34 DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 93
Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
T VYHPNIDLEGNV LNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct: 94 TMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 153
Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct: 154 RRLFEQNVQRSMRGGYIGSTYFERCLK 180
Score = 43.5 bits (103), Expect = 2e-05
Identities = 28/48 (58%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
Query: 33 MIKLFSLKQQKKDGENPARPGTQQKKASAAQLRITK--AELELPTYSG 78
MIKLFSLKQQKK+ E + KKASAAQLRI K EL LP
Sbjct: 3 MIKLFSLKQQKKEEEKGS-----SKKASAAQLRIQKDINELNLPKTCD 45
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 223 bits (570), Expect = 2e-73
Identities = 69/152 (45%), Positives = 93/152 (61%), Gaps = 6/152 (3%)
Query: 156 DLNELNLPKTCTT------EFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEP 209
DL+ L+LP T T + + ++I+ PDEG+Y G F+ YP EP
Sbjct: 37 DLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEP 96
Query: 210 PKVKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAA 269
PKV C ++HPNIDL+GNVCLNILREDW P L + SI+ GL +LFLEPNP DPLNK+AA
Sbjct: 97 PKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAA 156
Query: 270 EVLQNNRRLFEQNVQKAMRGGYIGSVYFERCL 301
++L + F + V+ M GG I V ++ +
Sbjct: 157 KLLCEGEKEFAEAVRLTMSGGSIEHVKYDNIV 188
Score = 44.0 bits (104), Expect = 1e-05
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 33 MIKLFSLKQQKKDGENPARPGTQQKKASAAQLRITK--AELELP 74
M+KL L+++K+ + + Q SAA++R+ + L+LP
Sbjct: 3 MLKLRQLQKKKQ--KENENSSSIQPNLSAARIRLKRDLDSLDLP 44
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 182 bits (465), Expect = 5e-58
Identities = 59/142 (41%), Positives = 83/142 (58%), Gaps = 9/142 (6%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVK 213
++ EL NLP TC FP+P+ L F+L ++PDEG+Y+ GKF F +V Y PPKVK
Sbjct: 22 EVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVK 81
Query: 214 CETPVYHPNIDLEGNVCLNILR------EDWKPVLTINSIVYGLQYLFLE-PNPEDPLNK 266
C T ++HPNI G +CL++LR W P T+ +V+GL LF + N +DPLN
Sbjct: 82 CLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNI 141
Query: 267 EAAEVLQNNRRLFEQNVQKAMR 288
EAAE ++ F V ++
Sbjct: 142 EAAEHHLRDKEDFRNKVDDYIK 163
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 181 bits (462), Expect = 1e-57
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 6/138 (4%)
Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRS--GKFVFSFKVGPNYPHEPPKV 212
+ N P + + D + ++ L + P + Y + S +YPHEPP V
Sbjct: 29 EANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTV 88
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSI---VYGLQYLFLEPNPEDPLNKEAA 269
+ TPVY P + EG +C ++ + W P + + V + + +D +N EA
Sbjct: 89 RFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEAR 148
Query: 270 EVLQNNRRLFEQNVQKAM 287
L+ + F V++
Sbjct: 149 HYLEKFPQDFAARVRRGR 166
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 163 bits (415), Expect = 1e-50
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVK 213
+L +L P + ++L + ++ PD+ Y F P YP +PP +K
Sbjct: 12 ELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIK 71
Query: 214 CETPVYHPNIDLEGNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPN+D G +CL I+ E+WKP ++ L L PN +PL + A++L
Sbjct: 72 FTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLL 131
Query: 273 QNNRRLFEQNVQK 285
N LF +N ++
Sbjct: 132 TQNPELFRKNAEE 144
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 140 bits (356), Expect = 9e-42
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVK 213
L ++ + K + +LL+++ +I PD Y G F YP +PPK+
Sbjct: 11 LEEIRK-CGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKIT 69
Query: 214 CETPVYHPNIDLEGNVCLNILRED-WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
+T +YHPNID +G VCL ++ + WKP + ++ L L +P PE PL + AE
Sbjct: 70 FKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEY 129
Query: 273 QNNRRLFEQNVQ 284
+R+ F +N +
Sbjct: 130 SKDRKKFCKNAE 141
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 134 bits (340), Expect = 2e-39
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
++ L + P FPN +DL ++ I P+ Y G F +G ++P PPK
Sbjct: 22 VTTLTA-DPPDGIKV-FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKG 79
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T ++HPN+ G +C+N+L+ DW L I ++ ++ L + PNPE LN+EA +L
Sbjct: 80 YFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLL 139
Query: 273 QNNRRLFEQNVQ 284
N + +
Sbjct: 140 LENYEEYAARAR 151
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 131 bits (333), Expect = 2e-38
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+ L P P P++ F ++I+ PD Y G + + YP EPPKV
Sbjct: 9 ETQNLANEPPPGIMA-VPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKV 67
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
+ T +YHPNID G +CL+IL++ W P L I +++ +Q L P P+DPL+ + AE
Sbjct: 68 RFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHF 127
Query: 273 QNNRRLFEQNVQ 284
+ ++ E +
Sbjct: 128 KQDKNDAEHVAR 139
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 131 bits (332), Expect = 3e-38
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 4/132 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+ +L + T P+ D+L F++ I P++ Y G F + +YP E PKV
Sbjct: 13 ETEKLVSDPVPGITA-EPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKV 71
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
+ T +YHPNID G +CL++L+ +W P L I +++ +Q L PNP DPL + AE
Sbjct: 72 RFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDW 131
Query: 273 QNNRRLFEQNVQ 284
N + + +
Sbjct: 132 IKNEQGAKAKAR 143
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 131 bits (331), Expect = 4e-38
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+ L P+ + F ++I+ P + + G F + YP PKV
Sbjct: 13 ETQRLLAEPVPGIKA-EPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKV 71
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
+ T +YHPN+D G +CL+IL++ W P L I +++ +Q L PNP+DPL + AE
Sbjct: 72 RFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQW 131
Query: 273 QNNRRLFEQNVQ 284
+ N + +
Sbjct: 132 KTNEAQAIETAR 143
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 131 bits (331), Expect = 5e-38
Identities = 36/117 (30%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 170 FPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGN 228
P ++++ + +I PD+ + G F S + +YP++PP V+ + ++HPNI +G+
Sbjct: 27 APQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGS 86
Query: 229 VCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
+CL+IL+ W P+ + +I+ +Q L +PNP P N EAA + ++R + + V+
Sbjct: 87 ICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRD 143
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 131 bits (331), Expect = 7e-38
Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 170 FPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGN 228
P PD+++ + +II P + Y G F + YP++PP VK + ++HPN+ G
Sbjct: 27 SPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGE 86
Query: 229 VCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
+CL+IL+ W P + SI+ +Q LF +PNP P N EAA + ++++ + + V++
Sbjct: 87 ICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKE 143
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 130 bits (329), Expect = 9e-38
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 170 FPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEG 227
++ + I+ P + Y G++ K+ YP PPKV+ T ++HPNI + G
Sbjct: 34 DLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 93
Query: 228 NVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
+CL+IL++ W +T+ +++ LQ L P+DP + A + N +F+Q +
Sbjct: 94 AICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 150
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 129 bits (327), Expect = 2e-37
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 9/140 (6%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+L +L + P C+ P DDL ++ I P E Y+ G F + +YP +PPKV
Sbjct: 12 ELQDLGRDPPAQCSA-GPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKV 70
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 71 AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 130
Query: 273 QNNRRLFEQNVQK-----AM 287
+ +R + Q ++ AM
Sbjct: 131 KTDRERYNQLAREWTQKYAM 150
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 129 bits (326), Expect = 2e-37
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
++ + + T EF + D+ K + P Y GKFV +V YP +PPK+
Sbjct: 9 EIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKM 68
Query: 213 KCETPVYHPNID-LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEV 271
+ +T VYHPNI + G +CL+IL+ W PV+T+ S + LQ L P P DP + E A+
Sbjct: 69 QFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQH 128
Query: 272 LQNNRRLFEQNVQ 284
+R F +
Sbjct: 129 YLRDRESFNKTAA 141
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 131 bits (330), Expect = 3e-37
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
++ + + T EF + D+ K P Y GKFV +V YP +PPK+
Sbjct: 10 EIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKM 69
Query: 213 KCETPVYHPNID-LEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEV 271
+ +T VYHPNI + G +CL+ILR W PV+T+ S + LQ L P P DP + E A+
Sbjct: 70 QFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQH 129
Query: 272 LQNNRRLFEQNVQ 284
+R F +
Sbjct: 130 YLRDRESFNKTAA 142
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 129 bits (326), Expect = 4e-37
Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 9/140 (6%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C+ P DD+ ++ I P++ Y+ G F + +YP +PPKV
Sbjct: 27 ELNDLARDPPAQCSA-GPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 85
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++CL+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 86 AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 145
Query: 273 QNNRRLFEQNVQK-----AM 287
+ +R + + ++ AM
Sbjct: 146 KTDREKYNRIAREWTQKYAM 165
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 128 bits (325), Expect = 5e-37
Identities = 46/132 (34%), Positives = 79/132 (59%), Gaps = 4/132 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C+ P DD+ ++ I+ P++ Y G F + +YP +PPKV
Sbjct: 29 ELNDLSKDPPTNCSA-GPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKV 87
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ +G +CL+IL++ W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 88 NFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLY 147
Query: 273 QNNRRLFEQNVQ 284
+++R ++Q +
Sbjct: 148 KSDRMRYDQTAR 159
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 129 bits (326), Expect = 8e-37
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 170 FPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEG 227
++ + I+ P + Y G++ K+ YP PPKV+ T ++HPNI + G
Sbjct: 31 DLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 90
Query: 228 NVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
+CL+IL++ W +T+ +++ LQ L P+DP + A + N +F+Q +
Sbjct: 91 AICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 147
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 128 bits (324), Expect = 1e-36
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 156 DLNELNL--PKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+L ++ L P C+ P D++ ++ I P Y G F P YP +PPKV
Sbjct: 56 ELADITLDPPPNCSA-GPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKV 114
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YH NI+ +G +CL+IL+++W P LTI+ ++ + L + NP DPL A
Sbjct: 115 TFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY 174
Query: 273 QNNRRLFEQNVQK 285
NR ++ ++
Sbjct: 175 MTNRAEHDRMARQ 187
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 127 bits (321), Expect = 2e-36
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+L+ L P T + + D + + I+ Y G F + YP EPP++
Sbjct: 12 ELHMLATEPPPGITC-WQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQI 70
Query: 213 KCETPVYHPNIDLEGNVCLNIL----REDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEA 268
+ TP+YHPNID G +CL++L + W+P L I +++ +Q L EPNP+DPL +
Sbjct: 71 RFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADI 130
Query: 269 AEVLQNNRRLFEQNVQ 284
+ + N+ F +N +
Sbjct: 131 SSEFKYNKPAFLKNAR 146
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 128 bits (324), Expect = 2e-36
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+L ++ + + + I P+ Y G F + + +YP+ PPK+
Sbjct: 31 ELKDIENENVQEIDA-HIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKI 89
Query: 213 KCETPVYHPNIDLE-GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEV 271
K T ++HPNI + G +CL++L+ +W P LTI + + +Q L +P P+DP + E A++
Sbjct: 90 KFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKM 149
Query: 272 LQNNRRLFEQNVQ 284
+ N LF +
Sbjct: 150 YKENHALFVKTAS 162
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 126 bits (319), Expect = 3e-36
Identities = 41/117 (35%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 170 FPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGN 228
FP+ D+L + + P + Y S K+ + + +YP++PP VK TP +HPN+D GN
Sbjct: 32 FPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGN 91
Query: 229 VCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
+CL+IL+E+W + +I+ LQ L EPN PLN +AA+ + +N+ +++ + +
Sbjct: 92 ICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAAD-MWSNQTEYKKVLHE 147
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 127 bits (321), Expect = 3e-36
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 170 FPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE-G 227
D+ ++ I+ P Y G F + P+YP+ PPK+K T ++HPNI + G
Sbjct: 68 QIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTG 127
Query: 228 NVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
+CL+IL+ +W P LTI + + +Q + +P P DP + E A+++ N LF Q +
Sbjct: 128 AICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAK 184
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 126 bits (318), Expect = 4e-36
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
D + + E N F ++ P+ Y G + + +YP P +
Sbjct: 8 QCDFTK-LIMAGYDLE-LNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSI 65
Query: 213 KCETPVYHPNID-LEGNVCLNILREDWKPVLTINSIVY-GLQYLFLEPNPEDPLNKEAAE 270
+ HPN+D G+VCL+++ + W P+ ++ ++ L L PNP DPLN +AA
Sbjct: 66 GFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAAS 125
Query: 271 VLQNNRRLFEQNVQ 284
+L ++ ++E+ V+
Sbjct: 126 LLMKDKNIYEEKVK 139
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 128 bits (324), Expect = 5e-36
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 170 FPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEG 227
++ + I+ P + Y G++ K+ YP PPKV+ T ++HPNI + G
Sbjct: 83 DLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG 142
Query: 228 NVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
+CL+IL++ W +T+ +++ LQ L P+DP + A + N +F+Q +
Sbjct: 143 AICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 199
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 124 bits (314), Expect = 3e-35
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Query: 156 DLNELNL--PKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+L L + K + FP D+L + I Y ++ S + YP+ P V
Sbjct: 38 ELMTLMMSGDKGISA-FPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTV 96
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
K TP YHPN+D +GN+ L+IL+E W + + +I+ +Q L EPN + PLN AAE L
Sbjct: 97 KFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAE-L 155
Query: 273 QNNRRLFEQNVQK 285
N F++ +Q+
Sbjct: 156 WKNPTAFKKYLQE 168
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 122 bits (309), Expect = 7e-35
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 167 TTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL 225
+ DL ++ I + + G + + + YP +PPKVK YHPN+
Sbjct: 29 VKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYP 88
Query: 226 EGNVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNV 283
G +CL+IL E DW+P +T+ IV G+Q L PNP P + A N+ +++ V
Sbjct: 89 SGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 148
Query: 284 QK 285
Sbjct: 149 LL 150
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 122 bits (308), Expect = 2e-34
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 170 FPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE-G 227
P +D++ ++ I ++ F + Y + PP VK T +HPN+D G
Sbjct: 46 KPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTG 105
Query: 228 NVCLNILR--EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
C++ L E W T++SI+ LQ + P E+P+N EAA +L + L+ ++
Sbjct: 106 QPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRL 165
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 121 bits (305), Expect = 3e-34
Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 167 TTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL 225
DL+++K I + + G + + YP PPK + P++HPN+
Sbjct: 35 CKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYP 94
Query: 226 EGNVCLNILRED--WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNV 283
G VCL+IL E+ WKP +TI I+ G+Q L +PN P EA + + ++ +E+ V
Sbjct: 95 SGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRV 154
Query: 284 QK 285
+
Sbjct: 155 RA 156
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 121 bits (305), Expect = 3e-34
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 167 TTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDL 225
T +L++++ I + G F +YP PPK K E P++HPN+
Sbjct: 32 TKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP 91
Query: 226 EGNVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNV 283
G VCL+IL E DW+P +TI I+ G+Q L EPN + P EA + NR +E+ V
Sbjct: 92 SGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRV 151
Query: 284 QK 285
+
Sbjct: 152 RA 153
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 120 bits (304), Expect = 6e-34
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 6/134 (4%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
D L + +P+ D + F + P+ Y G ++ ++ +YP + P +
Sbjct: 18 EMDYMRL--CNSTRKVYPS-DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSI 74
Query: 213 KCETPVYHPNIDLE-GNVCLNILREDWKPVLTINSIVY-GLQYLFLEPNPEDPLNKEAAE 270
+ HPN+D G+VCL+++ + W P+ + +I L L PNP DPLN +AA
Sbjct: 75 GFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAH 134
Query: 271 VLQNNRRLFEQNVQ 284
+L +R F+ ++
Sbjct: 135 LLHADRVGFDALLR 148
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 120 bits (304), Expect = 7e-34
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 174 DDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNID-LEGNVCL 231
L F + P Y G + + YP + P + ++HPNID G VCL
Sbjct: 48 GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCL 107
Query: 232 NILREDWKPVLTINSIVY-GLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
+++ + W + + +I L L PNP DPLN +AA + + ++Q +++
Sbjct: 108 DVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKE 162
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 122 bits (307), Expect = 3e-32
Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 4/135 (2%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+LN+L + P C+ P DD+ ++ I P++ Y+ G F + +YP +PPKV
Sbjct: 11 ELNDLARDPPAQCSAG-PVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV 69
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T +YHPNI+ G++ L+ILR W P LTI+ ++ + L +PNP+DPL E A +
Sbjct: 70 AFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY 129
Query: 273 QNNRRLFEQNVQKAM 287
+ +R + + ++
Sbjct: 130 KTDREKYNRIAREWT 144
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 115 bits (290), Expect = 6e-32
Identities = 36/148 (24%), Positives = 72/148 (48%), Gaps = 16/148 (10%)
Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
+++ +L N P+ N ++ ++ LI+ P++ + G F +YP PP
Sbjct: 9 MAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPP 68
Query: 211 KVKCETPVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIVYGLQYLFLE 257
K++ ++HPNI +G VC++IL E W PV ++ I+ + + E
Sbjct: 69 KMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAE 128
Query: 258 PNPEDPLNKEAAEVLQNNRRLFEQNVQK 285
PN E N +A+++ +++R F + ++
Sbjct: 129 PNDESGANVDASKMWRDDREQFYKIAKQ 156
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 115 bits (290), Expect = 8e-32
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 5/119 (4%)
Query: 172 NPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVK-CETPVYHPNIDLE-GN 228
+ DL ++ +I P + Y + +F +V +YP PPK+ + + H N+ G
Sbjct: 43 DETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGE 102
Query: 229 VCLNILRED-WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQ-NNRRLFEQNVQK 285
+CLNIL+ + W PV + V+ + L EP + PL+ + +++ + ++ V+
Sbjct: 103 ICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKY 161
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 112 bits (282), Expect = 2e-30
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
L +L L + + DL +++ I P +Y G F K +YP+ PP
Sbjct: 13 LLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPP 72
Query: 211 KVKCETPVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIVYGLQYLFLE 257
+ T ++HPNI G+VC++IL E W P + +I+ + L E
Sbjct: 73 AFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNE 132
Query: 258 PNPEDPLNKEAAEVLQNNRRLFEQ 281
PN P N +A+ + + + +
Sbjct: 133 PNTFSPANVDASVMYRKWKESKGK 156
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 111 bits (280), Expect = 2e-30
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 14/137 (10%)
Query: 163 PKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHP 221
P + +++ + LI P + Y G F + +YP PPK+ + HP
Sbjct: 21 PPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP 80
Query: 222 NIDLEGNVCLNILR-------------EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEA 268
NI G VC++IL E W PV ++ I+ + + EPN E N +A
Sbjct: 81 NIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDA 140
Query: 269 AEVLQNNRRLFEQNVQK 285
+ ++NR FE+ V+
Sbjct: 141 CILWRDNRPEFERQVKL 157
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 111 bits (280), Expect = 2e-30
Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 17/149 (11%)
Query: 154 LSDLNELNL--PKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
L ELN + + + +DL ++ LII P + Y G F +YP PP
Sbjct: 23 RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPP 82
Query: 211 KVKCETPVYHPNIDLEGNVCLNIL-------------REDWKPVLTINSIVYGLQYLFLE 257
K+K T ++HPN+D G+VC++IL E W P+ T+ +I+ + + +
Sbjct: 83 KMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLAD 142
Query: 258 PNPEDPLNKEAAEVLQNNRRL-FEQNVQK 285
PN + P N +AA+ + +R F++ V +
Sbjct: 143 PNGDSPANVDAAKEWREDRNGEFKRKVAR 171
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 105 bits (263), Expect = 3e-28
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 5/122 (4%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFKL---IISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
L + P++C+ + DD+ K I+ P + + + S GPNYP PP
Sbjct: 15 LEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPP 74
Query: 211 KVKCETPVYHPNIDLE-GNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEA 268
KV + + P ++ G V + DWK T+ +++ L+ P + +
Sbjct: 75 KVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKE 134
Query: 269 AE 270
E
Sbjct: 135 GE 136
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 102 bits (256), Expect = 3e-27
Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPP 210
+L+ N P CT +P+++ + + + Y + + +YP +PP
Sbjct: 12 QKELHNFLNNPPINCTL-DVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPP 70
Query: 211 KVKCET-PVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPED 262
V P H ++ G++CL++L +D+ P L+I+ +V + + +
Sbjct: 71 IVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 102 bits (255), Expect = 7e-27
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 6/127 (4%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFK---LIISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
L + N+ + + + DD+ I + + + + NYP PP
Sbjct: 30 LERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPP 89
Query: 211 KVKCETPVYHPNIDLEGNVCLNIL--REDWKPVLTINSIVYGL-QYLFLEPNPEDPLNKE 267
VK +T + +D G V N L ++W TI +I+ L Q + N P E
Sbjct: 90 TVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNE 149
Query: 268 AAEVLQN 274
N
Sbjct: 150 GEVYSNN 156
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 101 bits (253), Expect = 8e-27
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPP 210
+LN N P CT +P ++ + + + Y + + NYP +PP
Sbjct: 26 QKELNNFLKNPPINCTI-DVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPP 84
Query: 211 KVKCET-PVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPE 261
V P H ++ G++CL++L +D+ P L+I+ ++ + + +
Sbjct: 85 IVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKEK 136
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 95.9 bits (239), Expect = 2e-24
Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 11/131 (8%)
Query: 154 LSDLNELNL-PKTCTTEFPNPDD----LLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPH 207
L +L E T + DD L + +II P Y + + + GP YP
Sbjct: 31 LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPE 90
Query: 208 EPPKVKCETPVYHPNIDLEGNV----CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDP 263
PP V+ T + ++ V +++L W+ +I ++ L+ L +
Sbjct: 91 APPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENMKL 149
Query: 264 LNKEAAEVLQN 274
+ N
Sbjct: 150 PQPPEGQCYSN 160
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 94.8 bits (236), Expect = 5e-24
Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 11/131 (8%)
Query: 154 LSDLNELNL-PKTCTTEFPNPDD----LLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPH 207
L +L E T + DD L + +II P Y + + + GP YP
Sbjct: 41 LEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPE 100
Query: 208 EPPKVKCETPVYHPNIDLEGNV----CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDP 263
PP V+ T + ++ V +++L W+ +I ++ L+ L +
Sbjct: 101 APPFVRFVTKINMNGVNSSNGVVDPRAISVLA-KWQNSYSIKVVLQELRRLMMSKENMKL 159
Query: 264 LNKEAAEVLQN 274
+ N
Sbjct: 160 PQPPEGQCYSN 170
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 88.9 bits (221), Expect = 3e-22
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 154 LSDLNEL--NLPKTCTTE-FPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEP 209
+L L + P T + + + + Y KF FK YP +
Sbjct: 28 QKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDS 87
Query: 210 PKVK--CETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYL 254
P+V E HP++ G++CL+IL EDW P L++ S+ + +
Sbjct: 88 PQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISM 134
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 89.2 bits (221), Expect = 1e-21
Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 5/117 (4%)
Query: 171 PNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPN-IDLEGNV 229
+PD L L I ++ + +F N+P +PP V+ PV + G +
Sbjct: 69 VDPDSPLHSDLQILKEK--EGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGAL 126
Query: 230 CLNILRED-WKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAE-VLQNNRRLFEQNVQ 284
C+ +L + W +I S++ + ++ + L ++ + VQ
Sbjct: 127 CMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ 183
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 87.1 bits (216), Expect = 7e-21
Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 5/120 (4%)
Query: 170 FPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGN 228
P P ++L + ++ P+ Y G + +P +PP + TP +
Sbjct: 37 EPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLC 96
Query: 229 V-CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPL---NKEAAEVLQNNRRLFEQNVQ 284
+ + + W P ++++I+ GL +E P + L F +
Sbjct: 97 LSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDK 156
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 82.0 bits (202), Expect = 4e-18
Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 23/154 (14%)
Query: 154 LSDLNEL--NLPKTCT---TEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPH 207
+ L +LP + + + + L K LI P + Y +G F F +YP
Sbjct: 82 AQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPS 141
Query: 208 EPPKVKCETPVYH-----PNIDLEGNVCLNILR-------EDWKP-VLTINSIVYGLQYL 254
PP V ET H PN+ +G VCL+IL E W P + ++ +Q L
Sbjct: 142 SPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSL 201
Query: 255 FLEPNP--EDPL--NKEAAEVLQNNRRLFEQNVQ 284
L P +P + R ++ N++
Sbjct: 202 ILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIR 235
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 36.5 bits (84), Expect = 0.003
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 204 NYPHEPPKVKCETP-----VYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEP 258
YP+ PP + ++D G + L L E P + ++ + +F +
Sbjct: 80 TYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDE 139
Query: 259 NP 260
P
Sbjct: 140 PP 141
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid
starvation signal response, EIF2alpha kinase,
transferase; NMR {Saccharomyces cerevisiae}
Length = 138
Score = 33.9 bits (77), Expect = 0.021
Identities = 13/99 (13%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 141 RQTQTLFHVCCVFLSDLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFK 200
Q L + +++ D +L K+ + P F++ + + F
Sbjct: 14 IQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQI----IFEITLRSVDKEPVESSITLHFA 69
Query: 201 VGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWK 239
+ P YP+ P+++ + + L+ + + ++
Sbjct: 70 MTPMYPYTAPEIEFKNVQNVMDSQLQ--MLKSEFKKIHN 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.026
Identities = 55/318 (17%), Positives = 93/318 (29%), Gaps = 92/318 (28%)
Query: 12 HTFSNNGIPTHPTLSICQIKNMIKL-FSLKQQKKDGENPARPGTQQKKASAAQLRITKA- 69
H + + ++ + K +IK + + K + + ++ A
Sbjct: 102 HALAAK-LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV-AI 159
Query: 70 ------------EL-EL-PTYSGSV--LLHQ--GVL--LYKGP---TYLFGQESGFNQTN 106
EL +L TY V L+ L L + +F Q G N
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ--GLN--- 214
Query: 107 TNLISWSVLLHQGVLLYKGPT----YLFGQESGFNVS---IRQTQTL-FHVCCVFLSDLN 158
++ W L T YL +S I Q + V L
Sbjct: 215 --ILEW--------LENPSNTPDKDYL----LSIPISCPLIGVIQLAHYVVTAKLL-GFT 259
Query: 159 ELNLPKTCTTEFPNPDDLLSFKLIISPD--EGFYRSGKFV--FSFKVGPNYPHEPPKVKC 214
L + L++ I D E F+ S + F +G V+C
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG---------VRC 310
Query: 215 -ETPVYHPNIDLEGNVCLNILREDWK-------PVLTINSIVYGLQYLFLEP-----NPE 261
E +PN L +IL + + P+L+I+ L ++ N
Sbjct: 311 YEA---YPNTSLP----PSILEDSLENNEGVPSPMLSIS----NLTQEQVQDYVNKTNSH 359
Query: 262 DPLNKEAAEVLQNNRRLF 279
P K+ L N +
Sbjct: 360 LPAGKQVEISLVNGAKNL 377
Score = 33.5 bits (76), Expect = 0.097
Identities = 37/217 (17%), Positives = 67/217 (30%), Gaps = 81/217 (37%)
Query: 16 NNGIPTHPTLSICQI---KNMI------KLFSL-----KQQKKDGENPAR-PGTQQKK-- 58
N+ +P + I + KN++ L+ L K + G + +R P +++K
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 59 ----------------ASAAQ----------LRITKAELELP---TYSGSVL-LHQGVLL 88
A+ + ++++P T+ GS L + G +
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 89 YKGPTYLFGQESGFNQTNTNLISWSVLLHQG---VLLYKGPTYLFGQESGF-NVSIRQTQ 144
E + + W +L + GP G SG ++ R
Sbjct: 477 ----------ERIVDCIIRLPVKWETTTQFKATHILDF-GP----GGASGLGVLTHRNKD 521
Query: 145 -TLFHVCCVFLSDLNELNLPKTCTTEFPNPDDLLSFK 180
T V + L+ NPDD FK
Sbjct: 522 GTGVRV--IVAGTLD------------INPDDDYGFK 544
Score = 31.2 bits (70), Expect = 0.58
Identities = 48/325 (14%), Positives = 78/325 (24%), Gaps = 155/325 (47%)
Query: 7 YQGSR--HTFSNNGIPTHPTLSICQIKNMIKLFSLKQQKKDGENPARP-----GTQQKKA 59
+ G R + N +P P++ L+ ++ E P Q++
Sbjct: 305 FIGVRCYEAYPNTSLP--PSI-------------LEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 60 SAAQLRITKAELELPTYSGSVLLHQGVLLYKGPTYLFGQESGFNQTNTNLISWSVLLHQG 119
Q + K LP + L G NL
Sbjct: 350 ---QDYVNKTNSHLPAGK-----QVEISLVNGAK--------------NL---------- 377
Query: 120 VLLYKGPTYLFGQES--GFNVSIR---------QTQTLF-----HVCCVFL-------SD 156
V+ GP +S G N+++R Q++ F FL S
Sbjct: 378 VV--SGPP-----QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 157 LNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCET 216
L DL+ + + + ++
Sbjct: 431 LLVPASDLIN-------KDLVKNNVSFNAKD-----------IQI--------------- 457
Query: 217 PVYHPN--IDL---EGNVCLNILRE------DWKPVLTINSI----------VYGLQYLF 255
PVY DL G++ I+ W T GL L
Sbjct: 458 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW-ETTTQFKATHILDFGPGGASGLGVLT 516
Query: 256 ----------------LEPNPEDPL 264
L+ NP+D
Sbjct: 517 HRNKDGTGVRVIVAGTLDINPDDDY 541
>1tt5_E Ubiquitin-conjugating enzyme E2 M; cell cycle, ligase; 2.60A
{Homo sapiens}
Length = 26
Score = 29.5 bits (65), Expect = 0.094
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 33 MIKLFSLKQQKKDGENPARPGTQQKK 58
MIKLFSLKQQKK+ E+ KK
Sbjct: 1 MIKLFSLKQQKKEEESAGGTKGSSKK 26
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 128
Score = 30.2 bits (68), Expect = 0.31
Identities = 8/50 (16%), Positives = 14/50 (28%)
Query: 163 PKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
P + D F++ + F + NYP P +
Sbjct: 26 PHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVNYPSCLPGI 75
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor
and arginine permease...; endosomal sorting, ESCRT-I;
1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A*
Length = 162
Score = 30.3 bits (68), Expect = 0.38
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 13/67 (19%)
Query: 204 NYPHEPPKVKCETPVY-----------HPNIDLEGNVCLNILREDWK-PVLTINSIVYGL 251
YP +PP + + ID G + L IL W + + +V L
Sbjct: 92 MYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPIL-HAWDPAAMNLIMVVQEL 150
Query: 252 QYLFLEP 258
L EP
Sbjct: 151 MSLLHEP 157
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG;
2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB:
1hkg_A
Length = 457
Score = 31.2 bits (70), Expect = 0.40
Identities = 6/57 (10%), Positives = 15/57 (26%), Gaps = 7/57 (12%)
Query: 126 PTYLF----GQESGFNVSIRQTQTLFHVCCVFLSDLNELNLPKTCTTEFPNPDDLLS 178
P ++ G ++G ++I V + L + +
Sbjct: 48 PGWVLKQVSGAQAGSFLAIVMGGGDLEVILI---SLAGRQESSIXASRSLAAAMSTT 101
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.75
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 225 LEGNVCLNILREDWKPVLTINSIV 248
L+ + L + +D P L I + +
Sbjct: 25 LQAS--LKLYADDSAPALAIKATM 46
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 128
Score = 28.8 bits (64), Expect = 1.2
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 178 SFKLIISPDEGFYRSGK-FVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILRE 236
SF + ++ + G F YP E P + + + D+ L +L
Sbjct: 39 SFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVS--DILKLLAL 96
Query: 237 DWK 239
+
Sbjct: 97 QAE 99
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: d.20.1.3
Length = 137
Score = 28.4 bits (63), Expect = 1.5
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 5/99 (5%)
Query: 141 RQTQTLFHVCCVFLSDLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFK 200
RQ L + ++ SD +L P ++ L G + K
Sbjct: 14 RQDHELQALEAIYGSDFQDLRPDARGRVREPPE---INLVLYPQGLAGEEVYVQVELRVK 70
Query: 201 VGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWK 239
P YP P++ + N + + + L E K
Sbjct: 71 CPPTYPDVVPEIDLKNAKGLSNESVN--LLKSHLEELAK 107
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed
beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Length = 488
Score = 28.2 bits (62), Expect = 3.5
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 200 KVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKPV------LTINSIVYGLQY 253
K HE ++ ET +G + + R + PV L + S ++ L++
Sbjct: 335 KTITRDGHEINVLQLETACGAAIRHFDGAHGVVVPRSRFLPVKTCSDLLLVKSDLFRLEH 394
Query: 254 LFLEPNPE 261
L+ +P
Sbjct: 395 GSLKLDPS 402
>1gui_A Laminarinase 16A; carbohydrate binding module, CBM, glucan,
cellulose; HET: BGC; 1.9A {Thermotoga maritima} SCOP:
b.18.1.14
Length = 155
Score = 27.3 bits (60), Expect = 3.7
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 102 FNQTNTNLISWSVLLHQGVLLYKGPTYLF 130
+ +W + +Q + LY+G TY
Sbjct: 49 ITIADPGTDTWHIQFNQWIGLYRGKTYTI 77
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta
barrel, nucleotidyltransferase; 3.57A {Homo sapiens}
PDB: 3r2w_A
Length = 528
Score = 27.8 bits (61), Expect = 5.0
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 206 PHEPPKVKCETPVYHPNIDLEGNVCLNILREDWKPV------LTINSIVYGLQYLFLEPN 259
++ ET V E ++ +N+ R + PV L + S +Y L L +
Sbjct: 380 DGGLNVIQLETAVGAAIKSFENSLGINVPRSRFLPVKTTSDLLLVMSNLYSLNAGSLTMS 439
Query: 260 PED 262
+
Sbjct: 440 EKR 442
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.20.1.3
Length = 152
Score = 26.6 bits (58), Expect = 6.4
Identities = 6/41 (14%), Positives = 15/41 (36%)
Query: 172 NPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+ F + ++ D + F + + YP P++
Sbjct: 52 GRSSKVYFTINMNLDVSDEKMAMFSLACILPFKYPAVLPEI 92
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1
conjugation pathway, RWD domain, alpha+beta sandwich
fold, structural genomics; NMR {Homo sapiens} SCOP:
d.20.1.3 PDB: 2dmf_A
Length = 128
Score = 26.4 bits (58), Expect = 7.8
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 178 SFKLIISPDEGFYRSGKFV---FSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNIL 234
+ + P + ++V +V YPHE P++ P + + L +L
Sbjct: 41 EIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPRGLSDEQIH--TILQVL 98
Query: 235 REDWK 239
K
Sbjct: 99 GHVAK 103
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium
tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A
{Agrobacterium tumefaciens str}
Length = 332
Score = 27.2 bits (61), Expect = 7.9
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 12/70 (17%)
Query: 230 CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL---QNNRRL-------- 278
+ + +++ L LF E + AA +L +
Sbjct: 255 MRAAQAGNAEEAKRLDATFQPLWALFKEFGSI-RVIYAAANILSLTVSEPPRPILPLTSA 313
Query: 279 FEQNVQKAMR 288
Q V++A+
Sbjct: 314 ERQRVEEALE 323
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.422
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,550,063
Number of extensions: 254671
Number of successful extensions: 510
Number of sequences better than 10.0: 1
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 74
Length of query: 302
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 209
Effective length of database: 4,105,140
Effective search space: 857974260
Effective search space used: 857974260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)