RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16981
(302 letters)
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 167 bits (425), Expect = 9e-53
Identities = 129/147 (87%), Positives = 138/147 (93%)
Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
D+NELNLPKTC F +PDDLL+FKL+I PDEGFY+SGKFVFSFKVG YPH+PPKVKCE
Sbjct: 11 DINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCE 70
Query: 216 TPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNN 275
T VYHPNIDLEGNVCLNILREDWKPVLTINSI+YGLQYLFLEPNPEDPLNKEAAEVLQNN
Sbjct: 71 TMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNN 130
Query: 276 RRLFEQNVQKAMRGGYIGSVYFERCLK 302
RRLFEQNVQ++MRGGYIGS YFERCLK
Sbjct: 131 RRLFEQNVQRSMRGGYIGSTYFERCLK 157
Score = 25.4 bits (55), Expect = 6.9
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 59 ASAAQLRITK--AELELPTYSG 78
ASAAQLRI K EL LP
Sbjct: 1 ASAAQLRIQKDINELNLPKTCD 22
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 121 bits (305), Expect = 8e-35
Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
+ D + + P + + ++ +II P + Y G F + YP++PP
Sbjct: 9 MRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPH 68
Query: 212 VKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEV 271
VK + ++HPN+ G +CL+IL+ W P + SI+ +Q LF +PNP P N EAA +
Sbjct: 69 VKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATL 128
Query: 272 LQNNRRLFEQNVQKAMR 288
++++ + + V++ +
Sbjct: 129 FKDHKSQYVKRVKETVE 145
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 119 bits (298), Expect = 9e-34
Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 16/149 (10%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
L ++ + + +D+ ++ L+I P + Y G F +YP +PPK+
Sbjct: 8 QLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKM 67
Query: 213 KCETPVYHPNIDLEGNVCLNILRE-------------DWKPVLTINSIVYGLQYLFLEPN 259
K + ++HPNID EGNVC++IL + W PV T+ +I+ + + +PN
Sbjct: 68 KFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPN 127
Query: 260 PEDPLNKEAAEVLQNNRRLFEQNVQKAMR 288
E P N +AA++ + N F++ V + +R
Sbjct: 128 FESPANVDAAKMQRENYAEFKKKVAQCVR 156
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 115 bits (288), Expect = 2e-32
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 2/132 (1%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVK 213
+L E+ + P C+ + I+ P Y G F P+YP +PPKV
Sbjct: 10 ELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVT 69
Query: 214 CETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQ 273
T +YH NI+ +G +CL+IL+++W P LTI+ ++ + L + NP DPL A
Sbjct: 70 FRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYM 129
Query: 274 NNRRLFEQNVQK 285
NR ++ ++
Sbjct: 130 TNRAEHDRMARQ 141
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 114 bits (287), Expect = 3e-32
Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
+ D +L + P + + L +I P E + G F S + YP++PP
Sbjct: 9 MRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPT 68
Query: 212 VKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEV 271
VK + ++HPN+ +G++CL+IL+ W P + +I+ +Q L EPNP P N AA++
Sbjct: 69 VKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQL 128
Query: 272 LQNNRRLFEQNVQK 285
Q NRR +E+ VQ+
Sbjct: 129 YQENRREYEKRVQQ 142
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 112 bits (281), Expect = 2e-31
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 4/135 (2%)
Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
+ ++ + + T EF + D+ K + P Y GKFV +V YP +PP
Sbjct: 7 MKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPP 66
Query: 211 KVKCETPVYHPNIDLEGNV-CLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAA 269
K++ +T VYHPNI CL+IL+ W PV+T+ S + LQ L P P DP + E A
Sbjct: 67 KMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVA 126
Query: 270 EVLQNNRRLFEQNVQ 284
+ +R F +
Sbjct: 127 QHYLRDRESFNKTAA 141
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 112 bits (281), Expect = 2e-31
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVK 213
+L +L + P C+ D I+ P E Y+ G F + +YP +PPKV
Sbjct: 9 ELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVA 68
Query: 214 CETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQ 273
T +YHPNI+ G++CL+ILR W P LTI+ ++ + L +PNP+DPL E A + +
Sbjct: 69 FTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128
Query: 274 NNRRLFEQNVQK 285
+R + Q ++
Sbjct: 129 TDRERYNQLARE 140
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 110 bits (275), Expect = 1e-30
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
+ +L E+ K + +LL+++ +I PD Y G F YP +PPK
Sbjct: 5 MKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPK 64
Query: 212 VKCETPVYHPNIDLEGNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAE 270
+ +T +YHPNID +G VCL ++ E+WKP + ++ L L +P PE PL + AE
Sbjct: 65 ITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAE 124
Query: 271 VLQNNRRLFEQNVQ 284
+R+ F +N +
Sbjct: 125 EYSKDRKKFCKNAE 138
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 107 bits (267), Expect = 3e-29
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLL-SFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
L +L +L + P + +++ LI P + Y G F + +YP PP
Sbjct: 9 LKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPP 68
Query: 211 KVKCETPVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIVYGLQYLFLE 257
K+ + HPNI G VC++IL E W PV ++ I+ + + E
Sbjct: 69 KLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSE 128
Query: 258 PNPEDPLNKEAAEVLQNNRRLFEQNVQKAMR 288
PN E N +A + ++NR FE+ V+ ++
Sbjct: 129 PNIESGANIDACILWRDNRPEFERQVKLSIL 159
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 106 bits (266), Expect = 4e-29
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
+ +L +L P + ++L + ++ PD+ Y F P YP +PP
Sbjct: 6 VKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPM 65
Query: 212 VKCETPVYHPNIDLEGNVCLNILREDW-KPVLTINSIVYGLQYLFLEPNPEDPLNKEAAE 270
+K T +YHPN+D G +CL I+ + KP ++ L L PN +PL + A+
Sbjct: 66 IKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLAD 125
Query: 271 VLQNNRRLFEQNVQ 284
+L N LF +N +
Sbjct: 126 LLTQNPELFRKNAE 139
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 106 bits (264), Expect = 8e-29
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
+ + L E + +I P + + G F + YP PK
Sbjct: 8 IKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPK 67
Query: 212 VKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEV 271
V+ T +YHPN+D G +CL+IL++ W P L I +++ +Q L PNP+DPL + AE
Sbjct: 68 VRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQ 127
Query: 272 LQNNRRLFEQNVQ 284
+ N + +
Sbjct: 128 WKTNEAQAIETAR 140
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 105 bits (262), Expect = 2e-28
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
+ + +L + T E + + I P++ Y G F + +YP E PK
Sbjct: 9 IKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPK 68
Query: 212 VKCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEV 271
V+ T +YHPNID G +CL++L+ +W P L I +++ +Q L PNP DPL + AE
Sbjct: 69 VRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAED 128
Query: 272 LQNNRRLFEQNVQ 284
N + + +
Sbjct: 129 WIKNEQGAKAKAR 141
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 105 bits (262), Expect = 2e-28
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 2/132 (1%)
Query: 155 SDLNELNLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKVK 213
S+ + + D+ ++ I+ P Y G F + P+YP+ PPK+K
Sbjct: 22 SEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK 81
Query: 214 CETPVYHPNIDLE-GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T ++HPNI + G +CL+IL+ +W P LTI + + +Q + +P P DP + E A+++
Sbjct: 82 FVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMM 141
Query: 273 QNNRRLFEQNVQ 284
N LF Q +
Sbjct: 142 IENHPLFVQTAK 153
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 103 bits (258), Expect = 6e-28
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 158 NELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETP 217
+E + + + I P + Y G++ K+ YP PPKV+ T
Sbjct: 19 SEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK 78
Query: 218 VYHPNIDLE-GNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNR 276
++HPNI G +CL+IL++ W +T+ +++ LQ L P+DP + A + N
Sbjct: 79 IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNP 138
Query: 277 RLFEQNVQ 284
+F+Q +
Sbjct: 139 EMFKQTAR 146
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 100 bits (250), Expect = 7e-27
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+L L + K + FP D+L + I Y ++ S + YP+ P V
Sbjct: 9 ELMTLMMSGDKGISA-FPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTV 67
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
K TP YHPN+D +GN+ L+IL+E W + + +I+ +Q L EPN + PLN AAE L
Sbjct: 68 KFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAE-L 126
Query: 273 QNNRRLFEQNVQK 285
N F++ +Q+
Sbjct: 127 WKNPTAFKKYLQE 139
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 99.8 bits (248), Expect = 2e-26
Identities = 44/136 (32%), Positives = 77/136 (56%), Gaps = 5/136 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+L L + T FP+ D+L + + P + Y S K+ + + +YP++PP V
Sbjct: 17 ELRTLLMSGDPGITA-FPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVV 75
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
K TP +HPN+D GN+CL+IL+E+W + +I+ LQ L EPN PLN +AA+ +
Sbjct: 76 KFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAAD-M 134
Query: 273 QNNRRLFEQNVQKAMR 288
+N+ +++ + + +
Sbjct: 135 WSNQTEYKKVLHEKYK 150
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 99.1 bits (246), Expect = 4e-26
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGF-YRSGKFVFSFKVGPNYPHEPPKV 212
++ L + P FPN +DL ++ I EG Y G F +G ++P PPK
Sbjct: 14 EVTTLTADPPDGIKV-FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKG 72
Query: 213 KCETPVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVL 272
T ++HPN+ G +C+N+L+ DW L I ++ ++ L + PNPE LN+EA +L
Sbjct: 73 YFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLL 132
Query: 273 QNNRRLFEQNVQ 284
N + +
Sbjct: 133 LENYEEYAARAR 144
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 94.1 bits (233), Expect = 3e-24
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 169 EFPNPDDLLSFKLIISPDEG-FYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEG 227
+L++++ I +G + G F +YP PPK K E P++HPN+ G
Sbjct: 29 NPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG 88
Query: 228 NVCLNILRE--DWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 284
V L+IL E DW+P +TI I+ G+Q L EPN +DP EA + NR +E+ V+
Sbjct: 89 TVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 147
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 91.7 bits (227), Expect = 2e-23
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 6/133 (4%)
Query: 156 DLNELNLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKC 214
D+ +L K E L F P Y G + + YP + P +
Sbjct: 11 DVVKLIESKH---EVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGF 67
Query: 215 ETPVYHPNIDLEGNVC-LNILREDWKPVLTINSIVYG-LQYLFLEPNPEDPLNKEAAEVL 272
++HPNID L+++ + W + + +I L L PNP DPLN +AA +
Sbjct: 68 MNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMY 127
Query: 273 QNNRRLFEQNVQK 285
+ ++Q +++
Sbjct: 128 LHRPEEYKQKIKE 140
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 90.6 bits (224), Expect = 4e-23
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
D +L N K T P +D++ ++ I ++ F + Y + PP V
Sbjct: 12 DFCDLKENNYKGITA-KPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVV 70
Query: 213 KCETPVYHPNIDLEGN-VCLNILR--EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEAA 269
K T +HPN+D C++ L E W T++SI+ LQ + P E+P+N EAA
Sbjct: 71 KFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAA 130
Query: 270 EVLQNNRRLFEQNVQ 284
+L + L+ ++
Sbjct: 131 RILVKDESLYRTILR 145
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 90.3 bits (223), Expect = 7e-23
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
+L+ L P T I+ Y G F + YP EPP+
Sbjct: 8 KRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQ 67
Query: 212 VKCETPVYHPNIDLEGNVCLNILRED----WKPVLTINSIVYGLQYLFLEPNPEDPLNKE 267
++ TP+YHPNID G +CL++L+ W+P L I +++ +Q L EPNP+DPL +
Sbjct: 68 IRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMAD 127
Query: 268 AAEVLQNNRRLFEQNVQK 285
+ + N+ F +N ++
Sbjct: 128 ISSEFKYNKPAFLKNARQ 145
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 90.2 bits (223), Expect = 8e-23
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 2/132 (1%)
Query: 156 DLNELNLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCE 215
+++ + L + +P+ + P+ Y G ++ ++ +YP + P +
Sbjct: 6 EMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFC 65
Query: 216 TPVYHPNIDLEGN-VCLNILREDWKPVLTINSIVYGLQYLFL-EPNPEDPLNKEAAEVLQ 273
+ HPN+D VCL+++ + W P+ + +I L PNP DPLN +AA +L
Sbjct: 66 NRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLH 125
Query: 274 NNRRLFEQNVQK 285
+R F+ +++
Sbjct: 126 ADRVGFDALLRE 137
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 87.8 bits (217), Expect = 2e-22
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
L EL N + + + +DL ++ LII P + Y G F +YP PPK+
Sbjct: 7 QLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKM 66
Query: 213 KCETPVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIVYGLQYLFLEP 258
K T ++HPN+D G+VC++IL E W P+ T+ +I+ + + +P
Sbjct: 67 KFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP 125
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 83.9 bits (207), Expect = 1e-20
Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 9/124 (7%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFK---LIISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
L + + T + + +D+ + +II P Y + + + GP YP PP
Sbjct: 14 LEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP 73
Query: 211 KVKCETPVYHPNIDLEGN----VCLNILREDWKPVLTINSIVYGLQYLFLEP-NPEDPLN 265
V+ T + ++ +++L W+ +I ++ L+ L + N + P
Sbjct: 74 FVRFVTKINMNGVNSSNGVVDPRAISVL-AKWQNSYSIKVVLQELRRLMMSKENMKLPQP 132
Query: 266 KEAA 269
E
Sbjct: 133 PEGQ 136
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 78.5 bits (193), Expect = 1e-18
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 5/122 (4%)
Query: 154 LSDLNELNLPKTCTTEFPNPDDLLSFK---LIISPDEGFYRSGKFVFSFKVGPNYPHEPP 210
L + P++C+ + DD+ K I+ P + + + S GPNYP PP
Sbjct: 13 LEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPP 72
Query: 211 KVKCETPVYHPNIDLE-GNVCLNILR-EDWKPVLTINSIVYGLQYLFLEPNPEDPLNKEA 268
KV + + P ++ G V + DWK T+ +++ L+ P + +
Sbjct: 73 KVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKE 132
Query: 269 AE 270
E
Sbjct: 133 GE 134
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 73.5 bits (180), Expect = 5e-17
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 156 DLNEL--NLPKTCT-TEFPNPDDLLSFKLII-SPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
+L L + P T E + + + + + Y KF FK YP + P+
Sbjct: 11 ELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQ 70
Query: 212 VKCETPV--YHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLF 255
V HP++ G++CL+IL EDW P L++ S+ + +
Sbjct: 71 VMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISML 116
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 74.4 bits (182), Expect = 6e-17
Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 10/143 (6%)
Query: 154 LSDLNEL--NLPKTCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPK 211
D + + E + L ++ P+ Y G + +P +PP
Sbjct: 7 KQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPS 66
Query: 212 VKCETPVYHPNIDLEGNVCLNIL---REDWKPVLTINSIVYGLQYLFLEPNPEDP---LN 265
+ TP + +CL+I + W P ++++I+ GL +E P +
Sbjct: 67 IYMITPNGRFKCN--TRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETS 124
Query: 266 KEAAEVLQNNRRLFEQNVQKAMR 288
L F +
Sbjct: 125 DFTKRQLAVQSLAFNLKDKVFCE 147
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 72.8 bits (178), Expect = 7e-17
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 156 DLNEL--NLPKTCTTEFPNPDDLLSFK-LIISPDEGFYRSGKFVFSFKVGPNYPHEPPKV 212
+L+ N P CT + +P+++ + + + Y + + +YP +PP V
Sbjct: 6 ELHNFLNNPPINCTLD-VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIV 64
Query: 213 KCET-PVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLF 255
P H ++ G++CL++L +D+ P L+I+ +V + +
Sbjct: 65 YFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISML 108
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 70.8 bits (173), Expect = 8e-16
Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 8/106 (7%)
Query: 163 PKTCTTEFPNPDDLLSFKLIIS-PDEGFYRSGKFVFSFKV--GPNYPHEPPKVKCETP-- 217
K + D + ++ YR + + YP+ PP +
Sbjct: 33 LKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSS 92
Query: 218 ---VYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNP 260
++D G + L L E P + ++ + +F + P
Sbjct: 93 MTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPP 138
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 68.5 bits (167), Expect = 7e-15
Identities = 23/99 (23%), Positives = 29/99 (29%), Gaps = 11/99 (11%)
Query: 173 PDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPV-----------YHP 221
P LLS IS E V YP +PP +
Sbjct: 52 PQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQE 111
Query: 222 NIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNP 260
ID G + L IL + + +V L L EP
Sbjct: 112 YIDSNGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQ 150
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 61.8 bits (149), Expect = 2e-12
Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 6/141 (4%)
Query: 148 HVCCVFLSDLNELNLPK-TCTTEFPNPDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYP 206
+ ++ +L +L + +PD L L I ++ + +F N+P
Sbjct: 22 YKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEK--EGIEYILLNFSFKDNFP 79
Query: 207 HEPPKVKCETPVYHPNIDLEGN-VCLNILRED-WKPVLTINSIVYGLQYLFLEPNPEDPL 264
+PP V+ PV L G +C+ +L + W +I S++ + ++
Sbjct: 80 FDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQF 139
Query: 265 NKEAAE-VLQNNRRLFEQNVQ 284
+ L ++ + VQ
Sbjct: 140 GANKNQYNLARAQQSYNSIVQ 160
>d2a6aa2 c.55.1.9 (A:104-193) Hypothetical protein TM0874
{Thermotoga maritima [TaxId: 2336]}
Length = 90
Score = 30.4 bits (68), Expect = 0.067
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 17/88 (19%)
Query: 134 SGFNVSIRQTQTLFHVCCVFLSD--LNELNLP--------KTCTTEFPNPDDLLSFKLII 183
G + R+ + +H C V+L D LN L P + T EF +P +L L+I
Sbjct: 1 DGVVLVARRARKGYHYCAVYLKDKGLNPLKEPSVVSDEELEEITKEF-SPKIVLKDDLLI 59
Query: 184 SP------DEGFYRSGKFVFSFKVGPNY 205
SP E +R K + +++ P Y
Sbjct: 60 SPAVLVEESERLFREKKTIHYYEIEPLY 87
>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 140
Score = 26.3 bits (57), Expect = 3.3
Identities = 6/54 (11%), Positives = 19/54 (35%)
Query: 173 PDDLLSFKLIISPDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLE 226
+ F + ++ D + F + + YP P++ + + + +
Sbjct: 46 RSSKVYFTINMNLDVSDEKMAMFSLACILPFKYPAVLPEITVRSVLLSRSQQTQ 99
>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 24.5 bits (53), Expect = 8.3
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 194 KFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNVCLNILREDWK 239
F +V YPHE P++ P + + L +L K
Sbjct: 53 CFTLVLQVPAEYPHEVPQISIRNPRGLSDEQIH--TILQVLGHVAK 96
>d2j5wa3 b.6.1.3 (A:347-553) Ceruloplasmin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 207
Score = 25.1 bits (54), Expect = 9.9
Identities = 5/45 (11%), Positives = 13/45 (28%)
Query: 185 PDEGFYRSGKFVFSFKVGPNYPHEPPKVKCETPVYHPNIDLEGNV 229
+ F + + V C +Y+ +D ++
Sbjct: 140 SASHVAPTETFTYEWTVPKEVGPTNADPVCLAKMYYSAVDPTKDI 184
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.138 0.422
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,141,577
Number of extensions: 52469
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 37
Length of query: 302
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,240,546
Effective search space: 269198482
Effective search space used: 269198482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)