Query psy16982
Match_columns 116
No_of_seqs 155 out of 1006
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 18:41:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_C Importin alpha RE-expor 99.9 2.8E-23 9.4E-28 169.6 11.6 109 2-116 46-154 (960)
2 4fdd_A Transportin-1; heat rep 99.8 5E-19 1.7E-23 142.5 10.4 101 3-115 58-158 (852)
3 2bpt_A Importin beta-1 subunit 99.8 1.9E-18 6.7E-23 137.5 8.3 113 3-116 51-166 (861)
4 2x19_B Importin-13; nuclear tr 99.7 1.7E-17 5.7E-22 134.7 11.9 100 3-114 68-175 (963)
5 1ibr_B P95, importin beta-1 su 99.7 7E-18 2.4E-22 125.9 6.6 112 3-116 47-161 (462)
6 3a6p_A Exportin-5; exportin-5, 99.7 3.7E-17 1.3E-21 136.8 11.5 100 3-115 57-163 (1204)
7 3m1i_C Exportin-1; heat repeat 99.7 5.7E-17 1.9E-21 133.6 10.9 98 4-114 60-166 (1049)
8 2x1g_F Cadmus; transport prote 99.7 1.1E-16 3.7E-21 130.4 9.4 99 3-114 50-157 (971)
9 4hat_C Exportin-1; heat repeat 99.6 1.1E-14 3.6E-19 120.6 10.8 99 4-115 60-167 (1023)
10 3gjx_A Exportin-1; transport, 99.6 1.5E-14 5E-19 120.2 10.6 100 3-115 71-179 (1073)
11 1qgr_A Protein (importin beta 99.5 7.1E-15 2.4E-19 117.2 7.0 110 4-115 48-160 (876)
12 3ibv_A Exportin-T; karyopherin 99.3 1.4E-11 4.7E-16 101.7 8.8 93 6-114 56-158 (980)
13 1u6g_C TIP120 protein, CAND1; 98.2 1.1E-05 3.9E-10 67.2 11.7 96 4-115 59-164 (1230)
14 1u6g_C TIP120 protein, CAND1; 97.3 0.0025 8.5E-08 53.2 11.0 100 4-115 17-116 (1230)
15 2jdq_A Importin alpha-1 subuni 97.1 0.0013 4.5E-08 48.4 6.9 99 5-114 32-136 (450)
16 1b3u_A Protein (protein phosph 96.9 0.0062 2.1E-07 46.1 9.4 111 4-114 98-232 (588)
17 2qk2_A LP04448P; mini spindles 96.9 0.014 4.9E-07 40.0 10.0 91 5-114 110-205 (242)
18 2vgl_B AP-2 complex subunit be 96.7 0.011 3.7E-07 46.0 8.9 111 4-115 60-190 (591)
19 2qk2_A LP04448P; mini spindles 96.4 0.029 1E-06 38.4 8.9 98 4-114 26-127 (242)
20 1b3u_A Protein (protein phosph 96.2 0.034 1.2E-06 42.0 9.2 55 61-115 140-194 (588)
21 4db6_A Armadillo repeat protei 95.9 0.1 3.4E-06 34.4 9.3 91 6-114 67-167 (210)
22 4db6_A Armadillo repeat protei 95.7 0.035 1.2E-06 36.7 6.4 94 4-114 23-125 (210)
23 1ibr_B P95, importin beta-1 su 95.4 0.13 4.6E-06 37.5 9.4 68 48-115 367-438 (462)
24 1qgr_A Protein (importin beta 95.2 0.027 9.1E-07 44.8 5.3 90 5-115 13-119 (876)
25 2vgl_B AP-2 complex subunit be 95.2 0.11 3.7E-06 40.4 8.6 55 58-115 97-151 (591)
26 4hxt_A De novo protein OR329; 94.8 0.079 2.7E-06 35.5 6.1 93 5-114 14-115 (252)
27 2bpt_A Importin beta-1 subunit 94.8 0.46 1.6E-05 37.6 11.2 101 6-116 148-255 (861)
28 4db8_A Armadillo-repeat protei 94.6 0.078 2.7E-06 35.9 5.6 93 5-114 24-125 (252)
29 1w63_A Adapter-related protein 94.5 0.083 2.8E-06 41.4 6.2 64 50-116 353-416 (618)
30 4fdd_A Transportin-1; heat rep 94.4 0.4 1.4E-05 38.5 10.2 67 49-115 402-472 (852)
31 1wa5_B Importin alpha subunit; 94.3 0.04 1.4E-06 41.9 3.9 95 5-114 99-202 (530)
32 2vgl_A Adaptor protein complex 94.0 0.15 5.1E-06 40.2 6.8 73 42-115 141-217 (621)
33 2qk1_A Protein STU2; STU2P, XM 93.9 1.1 3.7E-05 31.1 12.0 100 5-115 73-176 (249)
34 4b8j_A Importin subunit alpha- 93.8 0.47 1.6E-05 35.8 9.1 98 5-114 86-189 (528)
35 2jdq_A Importin alpha-1 subuni 93.8 0.22 7.6E-06 36.3 7.1 93 6-114 289-390 (450)
36 4hxt_A De novo protein OR329; 93.6 0.25 8.4E-06 33.0 6.6 94 5-115 140-242 (252)
37 3ltm_A Alpha-REP4; protein eng 93.6 0.42 1.4E-05 31.5 7.6 56 52-114 148-203 (211)
38 4db8_A Armadillo-repeat protei 93.5 0.14 4.9E-06 34.5 5.3 92 5-114 108-209 (252)
39 1xqr_A HSPBP1 protein; armadil 93.5 0.89 3E-05 32.5 9.7 93 5-114 94-196 (296)
40 3tpo_A Importin subunit alpha- 93.4 0.45 1.5E-05 36.2 8.3 100 4-114 87-191 (529)
41 3ul1_B Importin subunit alpha- 93.3 0.62 2.1E-05 35.4 9.1 95 4-114 68-172 (510)
42 2vgl_A Adaptor protein complex 93.0 0.73 2.5E-05 36.2 9.3 94 5-116 341-435 (621)
43 2qk1_A Protein STU2; STU2P, XM 93.0 0.52 1.8E-05 32.7 7.6 68 47-115 146-221 (249)
44 1w63_A Adapter-related protein 92.8 0.18 6E-06 39.5 5.4 68 46-114 141-208 (618)
45 2of3_A ZYG-9; multifunctional 92.7 0.9 3.1E-05 32.3 8.6 75 39-116 124-198 (266)
46 4b8j_A Importin subunit alpha- 92.7 0.31 1.1E-05 36.7 6.6 93 6-114 342-443 (528)
47 1te4_A Conserved protein MTH18 92.4 0.31 1.1E-05 30.0 5.3 54 50-110 76-129 (131)
48 1vdy_A Hypothetical protein (R 92.4 0.12 4.2E-06 33.4 3.4 38 78-115 41-79 (140)
49 3ul1_B Importin subunit alpha- 92.2 0.86 3E-05 34.6 8.5 93 5-114 328-430 (510)
50 3tpo_A Importin subunit alpha- 92.0 0.93 3.2E-05 34.5 8.5 93 5-114 347-449 (529)
51 1wa5_B Importin alpha subunit; 91.9 0.72 2.4E-05 34.9 7.7 93 6-114 354-457 (530)
52 3ltj_A Alpharep-4; protein eng 91.8 0.66 2.2E-05 30.2 6.6 46 59-111 119-164 (201)
53 3ltm_A Alpha-REP4; protein eng 91.0 0.8 2.8E-05 30.0 6.5 53 53-112 56-108 (211)
54 3ltj_A Alpharep-4; protein eng 90.7 0.68 2.3E-05 30.2 5.8 26 86-111 77-102 (201)
55 1te4_A Conserved protein MTH18 90.6 0.46 1.6E-05 29.2 4.7 56 50-112 45-100 (131)
56 1oyz_A Hypothetical protein YI 89.5 1.2 4.1E-05 30.5 6.5 62 50-113 57-119 (280)
57 1xqr_A HSPBP1 protein; armadil 89.1 1.5 5.1E-05 31.3 6.9 92 6-114 138-238 (296)
58 1xm9_A Plakophilin 1; armadill 89.0 1.5 5.2E-05 32.8 7.2 62 51-113 6-72 (457)
59 1oyz_A Hypothetical protein YI 88.8 2.3 7.8E-05 29.1 7.6 57 51-112 163-219 (280)
60 1vsy_5 Proteasome activator BL 88.7 0.42 1.5E-05 39.9 4.2 96 9-116 817-926 (997)
61 3tjz_B Coatomer subunit gamma; 88.6 1.5 5E-05 32.5 6.7 68 46-114 138-205 (355)
62 1vsy_5 Proteasome activator BL 88.1 1.4 4.9E-05 36.8 7.0 70 39-110 126-199 (997)
63 2z6h_A Catenin beta-1, beta-ca 87.8 5.4 0.00019 30.9 9.9 91 5-113 69-168 (644)
64 1xm9_A Plakophilin 1; armadill 87.3 5.4 0.00019 29.7 9.3 91 6-114 15-116 (457)
65 1wa5_C Importin alpha RE-expor 87.2 1.8 6.1E-05 35.4 7.0 71 43-114 451-525 (960)
66 3now_A UNC-45 protein, SD10334 86.9 3.6 0.00012 33.7 8.5 103 5-114 342-450 (810)
67 3b2a_A TON_1937, putative unch 86.5 2.8 9.5E-05 29.7 6.7 66 48-113 151-217 (265)
68 3gs3_A Symplekin, LD45768P; he 86.2 5.7 0.00019 27.9 8.4 67 47-114 53-119 (257)
69 1jdh_A Beta-catenin; beta-cate 86.1 2.7 9.2E-05 31.2 7.0 56 59-114 239-295 (529)
70 3oc3_A Helicase MOT1, MOT1; re 83.6 7.6 0.00026 31.3 8.6 96 6-112 187-290 (800)
71 2db0_A 253AA long hypothetical 83.0 4.6 0.00016 27.9 6.4 52 59-111 119-170 (253)
72 3o2t_A Symplekin; heat repeat, 82.6 5.3 0.00018 29.9 7.2 62 51-113 67-128 (386)
73 2z6h_A Catenin beta-1, beta-ca 82.4 5.5 0.00019 30.9 7.6 56 59-114 236-292 (644)
74 1jdh_A Beta-catenin; beta-cate 81.7 14 0.00046 27.3 10.6 90 6-113 73-171 (529)
75 3l6x_A Catenin delta-1; cateni 81.3 18 0.00061 28.4 10.6 93 6-113 322-431 (584)
76 3gs3_A Symplekin, LD45768P; he 81.3 12 0.0004 26.3 8.6 74 41-115 6-83 (257)
77 3u0r_A Apoptosis inhibitor 5; 81.0 17 0.0006 28.1 9.9 76 6-101 41-116 (507)
78 1xgw_A Epsin 4; ENTH, enthopro 80.6 7 0.00024 26.0 6.6 46 70-115 54-103 (176)
79 3nmw_A APC variant protein; AR 80.6 7.8 0.00027 28.2 7.4 73 41-114 252-334 (354)
80 2z6g_A B-catenin; FULL-length, 80.4 4.7 0.00016 32.4 6.7 56 59-114 372-428 (780)
81 1eyh_A Epsin; superhelix of he 78.9 5.1 0.00017 25.8 5.3 44 71-114 26-72 (144)
82 4atg_A TAF6; transcription, TF 78.7 8.2 0.00028 26.1 6.5 62 50-112 90-160 (196)
83 2db0_A 253AA long hypothetical 78.1 14 0.00049 25.5 7.8 73 43-116 65-138 (253)
84 2z6g_A B-catenin; FULL-length, 78.0 2.8 9.6E-05 33.7 4.7 61 51-114 119-179 (780)
85 3tt9_A Plakophilin-2; cell adh 76.0 3.1 0.00011 28.7 3.9 64 51-114 12-81 (233)
86 3nmz_A APC variant protein; pr 75.9 11 0.00039 28.5 7.3 73 41-114 368-450 (458)
87 1n6j_G Calcineurin-binding pro 74.9 2.9 9.8E-05 19.9 2.4 17 39-55 8-24 (35)
88 1inz_A EPS15-interacting porte 74.9 6.6 0.00022 25.4 5.0 35 81-115 55-91 (148)
89 3l6x_A Catenin delta-1; cateni 74.0 5.7 0.00019 31.3 5.3 63 51-113 52-118 (584)
90 3now_A UNC-45 protein, SD10334 73.7 6.7 0.00023 32.1 5.8 63 51-114 669-737 (810)
91 3nmw_A APC variant protein; AR 73.6 23 0.0008 25.7 8.7 90 7-113 98-199 (354)
92 3oc3_A Helicase MOT1, MOT1; re 73.5 20 0.0007 28.9 8.2 88 6-114 276-365 (800)
93 3onk_A Epsin-3, ENT3; helix, p 73.4 7.8 0.00027 25.1 5.1 44 71-114 32-79 (150)
94 3m1i_C Exportin-1; heat repeat 72.2 13 0.00044 30.7 7.3 54 62-115 515-570 (1049)
95 4ffb_C Protein STU2; tubulin f 69.3 14 0.00048 25.4 6.1 54 61-114 153-212 (278)
96 1vsy_4 Proteasome activator BL 65.9 54 0.0018 26.8 11.5 77 37-114 325-412 (799)
97 4ffb_C Protein STU2; tubulin f 65.9 29 0.00099 23.7 9.4 56 59-116 115-170 (278)
98 3tt9_A Plakophilin-2; cell adh 65.3 30 0.001 23.7 9.7 87 8-112 25-122 (233)
99 3dad_A FH1/FH2 domain-containi 64.1 28 0.00094 25.6 6.9 55 60-114 173-231 (339)
100 1ho8_A Vacuolar ATP synthase s 63.2 19 0.00065 27.7 6.1 74 39-114 388-476 (480)
101 3d9j_A RNA-binding protein 16; 62.1 6.6 0.00023 25.0 2.9 46 69-115 27-72 (145)
102 2iw3_A Elongation factor 3A; a 61.7 72 0.0025 26.8 9.9 91 7-114 109-204 (986)
103 3b2a_A TON_1937, putative unch 60.2 43 0.0015 23.7 8.6 72 39-113 107-178 (265)
104 2of3_A ZYG-9; multifunctional 58.3 39 0.0013 23.8 6.6 52 62-114 182-236 (266)
105 2x19_B Importin-13; nuclear tr 54.1 51 0.0018 26.5 7.5 71 40-115 18-88 (963)
106 3nmz_A APC variant protein; pr 54.0 27 0.00092 26.4 5.5 53 61-113 214-271 (458)
107 3ibv_A Exportin-T; karyopherin 53.2 59 0.002 27.0 7.8 57 59-115 507-567 (980)
108 3clj_A Protein NRD1; CTD-inter 52.7 12 0.0004 24.5 2.9 32 84-115 40-71 (157)
109 3tjz_B Coatomer subunit gamma; 52.2 66 0.0023 23.5 8.1 63 50-115 107-169 (355)
110 2iw3_A Elongation factor 3A; a 51.5 46 0.0016 28.0 6.9 63 53-115 101-164 (986)
111 4hat_C Exportin-1; heat repeat 48.2 1.1E+02 0.0036 25.7 8.6 60 51-115 20-79 (1023)
112 4flb_A Regulation of nuclear P 46.5 48 0.0016 20.2 5.1 56 53-114 14-69 (132)
113 2x1g_F Cadmus; transport prote 45.7 34 0.0012 27.7 5.2 53 60-115 519-573 (971)
114 3l9t_A Putative uncharacterize 43.6 80 0.0027 22.0 7.2 37 59-100 190-226 (240)
115 3s4w_B Protein FACD2, fanconi 42.6 77 0.0026 27.6 7.0 60 56-116 408-469 (1323)
116 4ady_A RPN2, 26S proteasome re 41.1 58 0.002 27.3 5.9 57 52-113 582-640 (963)
117 1sz9_A PCF11 protein; RNA poly 39.5 64 0.0022 20.3 4.9 35 81-115 39-73 (144)
118 3opb_A SWI5-dependent HO expre 38.8 1.6E+02 0.0055 24.1 8.6 59 54-112 613-681 (778)
119 1tzv_A NUSB protein, N utiliza 37.8 72 0.0025 19.8 5.6 55 39-94 76-130 (142)
120 3a6p_A Exportin-5; exportin-5, 37.4 1.7E+02 0.0058 24.8 8.3 52 60-115 26-77 (1204)
121 2doa_A RNA polymerase II elong 36.6 21 0.00073 21.7 2.1 24 35-58 77-100 (104)
122 4fu3_A Regulation of nuclear P 35.4 57 0.002 19.9 4.1 56 53-114 13-68 (135)
123 2e5n_A RNA polymerase II elong 35.4 27 0.00091 21.1 2.4 20 35-54 78-97 (100)
124 1mhq_A ADP-ribosylation factor 34.7 70 0.0024 20.2 4.5 32 84-115 37-68 (148)
125 1x5b_A Signal transducing adap 33.6 72 0.0025 20.5 4.5 49 62-115 34-82 (163)
126 1dlc_A Delta-endotoxin CRYIIIA 33.4 76 0.0026 24.8 5.3 51 65-115 26-82 (584)
127 1ciy_A Cryia(A); toxin, ICP; 2 32.4 35 0.0012 26.8 3.3 32 66-97 28-59 (590)
128 1juq_A ADP-ribosylation factor 31.7 80 0.0028 20.5 4.5 32 84-115 49-80 (171)
129 3ldz_A STAM-1, signal transduc 30.9 89 0.0031 19.4 4.5 32 84-115 41-72 (140)
130 3g2s_A C-terminal fragment of 30.1 92 0.0032 19.7 4.5 32 84-115 47-78 (149)
131 1r8j_A KAIA; circadian clock p 29.9 1.2E+02 0.004 21.7 5.3 79 38-116 185-281 (289)
132 2jak_A Serine/threonine-protei 29.6 1.7E+02 0.006 21.7 7.9 32 85-116 174-205 (392)
133 3u7d_B Protein HEG homolog 1; 29.4 11 0.00037 16.7 -0.1 10 77-86 5-15 (26)
134 4atg_A TAF6; transcription, TF 29.2 1.2E+02 0.004 20.4 5.0 52 8-72 105-156 (196)
135 4h79_A Crispr-associated prote 28.8 1.4E+02 0.0047 20.2 5.9 48 46-93 129-177 (216)
136 1pve_A HHR23B, UV excision rep 28.8 27 0.00092 19.7 1.5 17 84-100 26-42 (72)
137 1w9c_A CRM1 protein, exportin 28.5 1.7E+02 0.0058 21.2 6.8 55 61-115 136-197 (321)
138 3d3b_A Protein NUSB, N utiliza 28.5 1.1E+02 0.0037 18.9 7.2 55 39-94 78-132 (141)
139 1rr7_A Middle operon regulator 28.1 29 0.001 21.6 1.8 20 76-95 21-40 (129)
140 3ee4_A Probable ribonucleoside 27.5 60 0.002 23.4 3.6 38 16-53 32-71 (323)
141 2ee7_A Sperm flagellar protein 27.4 1.1E+02 0.0039 18.9 4.7 78 38-115 10-120 (127)
142 3fga_B Serine/threonine-protei 26.9 1E+02 0.0035 23.1 4.8 32 85-116 129-160 (403)
143 1dvp_A HRS, hepatocyte growth 26.8 1E+02 0.0035 20.6 4.5 32 84-115 41-72 (220)
144 4gmo_A Putative uncharacterize 26.8 1.5E+02 0.0052 23.3 6.0 60 4-80 45-109 (684)
145 2qkg_A Insecticidal delta-endo 25.6 1.3E+02 0.0046 23.6 5.4 33 65-97 27-62 (589)
146 1upk_A MO25 protein; transfera 25.5 1.1E+02 0.0038 22.5 4.6 33 81-113 205-237 (341)
147 2npp_B PP2A, B subunit, serine 25.4 1E+02 0.0034 23.5 4.6 55 62-116 133-193 (449)
148 2ns0_A Hypothetical protein; r 25.3 27 0.00093 20.4 1.1 40 47-92 7-48 (85)
149 1lsh_A Lipovitellin (LV-1N, LV 25.0 2E+02 0.0067 24.1 6.6 62 1-84 522-584 (1056)
150 1ho8_A Vacuolar ATP synthase s 25.0 73 0.0025 24.5 3.8 35 45-79 445-479 (480)
151 2zu6_B Programmed cell death p 24.9 1.9E+02 0.0065 20.6 8.5 82 19-114 147-230 (307)
152 3pst_A Protein DOA1; protein d 24.6 1.9E+02 0.0066 21.8 6.0 94 6-113 275-388 (425)
153 3o2t_A Symplekin; heat repeat, 24.5 2.2E+02 0.0074 21.1 8.3 68 47-115 22-93 (386)
154 2js5_A Uncharacterized protein 24.5 1E+02 0.0035 17.3 3.6 27 62-89 17-43 (71)
155 3gjx_A Exportin-1; transport, 23.9 61 0.0021 27.4 3.4 61 50-115 31-91 (1073)
156 3opb_A SWI5-dependent HO expre 23.8 3E+02 0.01 22.5 9.3 75 39-113 284-362 (778)
157 3ebb_A Phospholipase A2-activa 23.4 2E+02 0.0069 20.4 7.5 96 7-113 162-262 (304)
158 1k19_A Chemosensory protein CS 23.4 1.3E+02 0.0045 18.3 4.4 48 39-88 35-86 (112)
159 2gvs_A Chemosensory protein CS 23.3 91 0.0031 18.9 3.3 48 40-89 38-89 (109)
160 4gmo_A Putative uncharacterize 22.6 76 0.0026 25.0 3.6 60 52-113 39-104 (684)
161 3olj_A Ribonucleoside-diphosph 22.4 74 0.0025 22.4 3.2 38 16-53 29-68 (286)
162 1upk_A MO25 protein; transfera 22.0 2.4E+02 0.0081 20.7 5.8 62 45-106 72-146 (341)
163 4h63_H Mediator of RNA polymer 21.3 1.9E+02 0.0066 19.3 5.6 39 53-91 13-51 (200)
164 3u0r_A Apoptosis inhibitor 5; 21.2 1.7E+02 0.0058 22.7 5.1 55 59-114 40-94 (507)
165 4gwp_C Mediator of RNA polymer 20.8 1.2E+02 0.0041 22.7 4.0 48 38-94 26-73 (407)
166 3gae_A Protein DOA1; UFD3, CDC 20.6 96 0.0033 21.4 3.4 94 6-113 103-216 (253)
No 1
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.89 E-value=2.8e-23 Score=169.62 Aligned_cols=109 Identities=25% Similarity=0.525 Sum_probs=100.4
Q ss_pred CCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC
Q psy16982 2 MSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG 81 (116)
Q Consensus 2 ~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~ 81 (116)
+++.+.++|++|+++|||.|+++|...+. ...+++++|+.||+.+++++.++++.||++++.+|+.|+++|||+
T Consensus 46 ~~~~~~~vR~~A~i~lkn~i~~~w~~~~~------~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~ 119 (960)
T 1wa5_C 46 STNLPLSTRLAGALFFKNFIKRKWVDENG------NHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPD 119 (960)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHSBCSSS------CBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCCCccc------CCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc
Confidence 44678899999999999999999986432 136999999999999999999998999999999999999999999
Q ss_pred chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982 82 KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116 (116)
Q Consensus 82 ~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y 116 (116)
+||+|++.|++.++++|+..++++|.+|+++|++|
T Consensus 120 ~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 120 RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred chhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999975
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.78 E-value=5e-19 Score=142.46 Aligned_cols=101 Identities=17% Similarity=0.311 Sum_probs=95.8
Q ss_pred CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCc
Q psy16982 3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGK 82 (116)
Q Consensus 3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~ 82 (116)
++.+..+|++|+++|||.|+++|. .+++++|+.||+.++++|.++++.+|++++.+++.|++.|+|+.
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~w~------------~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~ 125 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAHFQ------------NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQN 125 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTSGG------------GCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CCCChHHHHHHHHHHHHHHHHccC------------CCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccc
Confidence 456889999999999999999997 58999999999999999988888999999999999999999999
Q ss_pred hhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 83 WTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 83 Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
||++++.+++.++++|...+++++.+|+.+|+.
T Consensus 126 wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~ 158 (852)
T 4fdd_A 126 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICED 158 (852)
T ss_dssp CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999985
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.75 E-value=1.9e-18 Score=137.54 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=99.1
Q ss_pred CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCC-CCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC-
Q psy16982 3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFS-LHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP- 80 (116)
Q Consensus 3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~-i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P- 80 (116)
++.+..+|++|+++|||.|+++|....+.. ...|.. +++++|..||+.+++.|.++++.+|++++.+++.|++.|||
T Consensus 51 ~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~-~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~ 129 (861)
T 2bpt_A 51 ENTKLEGRILAALTLKNELVSKDSVKTQQF-AQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPH 129 (861)
T ss_dssp TTSCHHHHHHHHHHHHTTTCCSSHHHHHHH-HHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCCChHHHHHHHHHHHhhccCcChHHHHHH-HHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcc
Confidence 446889999999999999999997543210 012455 99999999999999999999899999999999999999999
Q ss_pred CchhHHHHHHHHhhCCC-ChHHHhHHHHHHHHHHhhC
Q psy16982 81 GKWTQIVDKVSIYLQNP-DATPWFGALLCLYQLVKNY 116 (116)
Q Consensus 81 ~~Wp~Ll~~l~~~l~~~-~~~~~~~~L~~L~~l~~~y 116 (116)
+.||++++.+++.++++ |+..+++++.+|..+++.|
T Consensus 130 ~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~ 166 (861)
T 2bpt_A 130 GAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESA 166 (861)
T ss_dssp TCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 69999999999999998 9999999999999999864
No 4
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.74 E-value=1.7e-17 Score=134.74 Aligned_cols=100 Identities=13% Similarity=0.238 Sum_probs=90.7
Q ss_pred CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHhccC
Q psy16982 3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVM---APEVIRVQLAVCVSNIVKHDF 79 (116)
Q Consensus 3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~---~~~~i~~~l~~~i~~Ia~~d~ 79 (116)
.+.+..+|++|+++|||.|+++|. .+++++|..||+.|++.+.+ .++.||++++.+++.|+++||
T Consensus 68 ~~~~~~vr~~aa~~L~~~i~~~w~------------~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~ 135 (963)
T 2x19_B 68 PDKVPEIQYFGASALHIKISRYWS------------DIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMM 135 (963)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHCGG------------GSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHHhCHH------------hCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC
Confidence 456889999999999999999996 58999999999999999988 358999999999999999999
Q ss_pred CCchhHHHHHHHHhhCC-----CChHHHhHHHHHHHHHHh
Q psy16982 80 PGKWTQIVDKVSIYLQN-----PDATPWFGALLCLYQLVK 114 (116)
Q Consensus 80 P~~Wp~Ll~~l~~~l~~-----~~~~~~~~~L~~L~~l~~ 114 (116)
|+.||++++.+++.+++ +++.....+|.+|..+++
T Consensus 136 p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~e 175 (963)
T 2x19_B 136 PDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPE 175 (963)
T ss_dssp TTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHH
Confidence 99999999999999976 366678899999998885
No 5
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.72 E-value=7e-18 Score=125.85 Aligned_cols=112 Identities=12% Similarity=0.203 Sum_probs=97.3
Q ss_pred CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC-C
Q psy16982 3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP-G 81 (116)
Q Consensus 3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P-~ 81 (116)
++.+..+|++|+++|||.|+++|...++.. ...|..+++++|+.||+.|++.|.++++.+ ++++.+|+.|++.|+| +
T Consensus 47 ~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~-~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~ 124 (462)
T 1ibr_B 47 PGNSQVARVAAGLQIKNSLTSKDPDIKAQY-QQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN 124 (462)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSSHHHHHHH-HHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT
T ss_pred CCCChHHHHHHHHHHHHhccccchHHHHHH-HhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc
Confidence 346789999999999999999996543210 012457999999999999999999988888 9999999999999999 5
Q ss_pred chhHHHHHHHHhhCCC--ChHHHhHHHHHHHHHHhhC
Q psy16982 82 KWTQIVDKVSIYLQNP--DATPWFGALLCLYQLVKNY 116 (116)
Q Consensus 82 ~Wp~Ll~~l~~~l~~~--~~~~~~~~L~~L~~l~~~y 116 (116)
.||++++.+++.++++ |+..+.+++.+|+.+++.+
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~ 161 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999988 8999999999999999864
No 6
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=136.77 Aligned_cols=100 Identities=15% Similarity=0.360 Sum_probs=91.3
Q ss_pred CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHH
Q psy16982 3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMA-------PEVIRVQLAVCVSNIV 75 (116)
Q Consensus 3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~-------~~~i~~~l~~~i~~Ia 75 (116)
.+.+..+|++|++.|||.|+++|. .+++++|+.||+.+++.+.+. ++.||++++.+++.|+
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~------------~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia 124 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWN------------GMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMI 124 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGG------------GSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcc------------cCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Confidence 456889999999999999999996 589999999999999999864 4799999999999999
Q ss_pred hccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 76 KHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 76 ~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
++|||++||++++.+++.+++ ++....++|.+|..+++.
T Consensus 125 ~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 125 KREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAED 163 (1204)
T ss_dssp HHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHH
T ss_pred HHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 999999999999999999976 567789999999999874
No 7
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.70 E-value=5.7e-17 Score=133.58 Aligned_cols=98 Identities=15% Similarity=0.294 Sum_probs=87.7
Q ss_pred CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHH
Q psy16982 4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP---------EVIRVQLAVCVSNI 74 (116)
Q Consensus 4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~---------~~i~~~l~~~i~~I 74 (116)
+.+..+|++|+++|||.|+++|. .+++++|..||+.+++.+.+.+ +.||++++.+++.|
T Consensus 60 s~~~~vr~~aa~~Lk~~i~~~W~------------~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~I 127 (1049)
T 3m1i_C 60 STNPQSKFIALSILDKLITRKWK------------LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQI 127 (1049)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTGG------------GSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhCc------------cCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHH
Confidence 45789999999999999999996 5999999999999999998753 68999999999999
Q ss_pred HhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 75 VKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 75 a~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
+++|||+.||++++.+++.++ +++.....+|.+|..+++
T Consensus 128 a~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~e 166 (1049)
T 3m1i_C 128 LKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSE 166 (1049)
T ss_dssp HHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHH
Confidence 999999999999999999997 556667788888888775
No 8
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.68 E-value=1.1e-16 Score=130.42 Aligned_cols=99 Identities=15% Similarity=0.335 Sum_probs=84.5
Q ss_pred CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhccC
Q psy16982 3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMA---PEVIRVQLAVCVSNIVKHDF 79 (116)
Q Consensus 3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~---~~~i~~~l~~~i~~Ia~~d~ 79 (116)
.+.+..+|++|+++|||.|+++|. .+++++|..||+.|++.+.+. ++.||++++.+++.|++++|
T Consensus 50 ~~~~~~vr~~aa~~L~~~i~~~w~------------~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~ 117 (971)
T 2x1g_F 50 LGKSQEVQFFGAITLHSKLMKHWH------------EVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHML 117 (971)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHCGG------------GCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcHHHHHHHHHHHHHHHHccHh------------hCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcc
Confidence 356789999999999999999996 599999999999999999873 58999999999999999999
Q ss_pred CCchhHHHHHHHHhhCCC------ChHHHhHHHHHHHHHHh
Q psy16982 80 PGKWTQIVDKVSIYLQNP------DATPWFGALLCLYQLVK 114 (116)
Q Consensus 80 P~~Wp~Ll~~l~~~l~~~------~~~~~~~~L~~L~~l~~ 114 (116)
| .||++++.+++.++++ ++.....+|.+|..+++
T Consensus 118 p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E 157 (971)
T 2x1g_F 118 G-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE 157 (971)
T ss_dssp C-C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred c-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence 9 9999999999999875 56788899999998886
No 9
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.57 E-value=1.1e-14 Score=120.64 Aligned_cols=99 Identities=15% Similarity=0.305 Sum_probs=86.9
Q ss_pred CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHH
Q psy16982 4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMA---------PEVIRVQLAVCVSNI 74 (116)
Q Consensus 4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~---------~~~i~~~l~~~i~~I 74 (116)
+.+..+|++|+++|||.|+++|. .+++++|..||+.+++.+.+. ++.++++++.+++.|
T Consensus 60 s~~~~vR~faa~~Lk~~I~~~W~------------~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I 127 (1023)
T 4hat_C 60 STNPQSKFIALSILDKLITRKWK------------LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQI 127 (1023)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHGG------------GSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhhh------------cCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHH
Confidence 34679999999999999999996 699999999999999999762 256788899999999
Q ss_pred HhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 75 VKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 75 a~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
+++|||+.||++++.+++.++++ +..+..+|.+|..+.+.
T Consensus 128 ~~~~~p~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EE 167 (1023)
T 4hat_C 128 LKQEWPQNWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEE 167 (1023)
T ss_dssp HHHHTTTTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHH
T ss_pred HHHhChhhchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999754 56688888888887763
No 10
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.56 E-value=1.5e-14 Score=120.18 Aligned_cols=100 Identities=17% Similarity=0.321 Sum_probs=88.4
Q ss_pred CCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhc---------CcHHHHHHHHHHHHH
Q psy16982 3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVM---------APEVIRVQLAVCVSN 73 (116)
Q Consensus 3 ~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~---------~~~~i~~~l~~~i~~ 73 (116)
.+.+..+|++|+..||+.|+++|. .+++++|..||+.+++.+.+ .++.++++++.+++.
T Consensus 71 ~s~~~~vR~fAa~~L~~~I~~~W~------------~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~ 138 (1073)
T 3gjx_A 71 FSQNMNTKYYGLQILENVIKTRWK------------ILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQ 138 (1073)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHTGG------------GSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhh------------hCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHH
Confidence 356789999999999999999996 59999999999999999975 136788999999999
Q ss_pred HHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 74 IVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 74 Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
|+++|||+.||++++.+++.+++ ++..+..+|.+|..+.+.
T Consensus 139 I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EE 179 (1073)
T 3gjx_A 139 ILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEE 179 (1073)
T ss_dssp HHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998864 456788899999988764
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.54 E-value=7.1e-15 Score=117.23 Aligned_cols=110 Identities=12% Similarity=0.206 Sum_probs=93.2
Q ss_pred CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC-Cc
Q psy16982 4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP-GK 82 (116)
Q Consensus 4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P-~~ 82 (116)
+.+..+|++|+++|||.+...|....... ...|..+++++|+.||+.+++.|.+++..+ ++++.+++.|++.++| +.
T Consensus 48 ~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~-~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~ 125 (876)
T 1qgr_A 48 GNSQVARVAAGLQIKNSLTSKDPDIKAQY-QQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQ 125 (876)
T ss_dssp TSCHHHHHHHHHHHHHHHCCSSHHHHHHH-HHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTC
T ss_pred CCCHHHHHHHHHHHHHhccccchHhHHHH-HhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccc
Confidence 35789999999999999976654211000 012457999999999999999998887778 9999999999999999 99
Q ss_pred hhHHHHHHHHhhCCC--ChHHHhHHHHHHHHHHhh
Q psy16982 83 WTQIVDKVSIYLQNP--DATPWFGALLCLYQLVKN 115 (116)
Q Consensus 83 Wp~Ll~~l~~~l~~~--~~~~~~~~L~~L~~l~~~ 115 (116)
||++++.+.+.++++ ++..+.+++.+|..+++.
T Consensus 126 w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (876)
T 1qgr_A 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (876)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999988 889999999999999875
No 12
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.26 E-value=1.4e-11 Score=101.73 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHh----HHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHHHHh
Q psy16982 6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQ----DKAMIRDAIVDAVVMA-----PEVIRVQLAVCVSNIVK 76 (116)
Q Consensus 6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~----~k~~IK~~ll~~l~~~-----~~~i~~~l~~~i~~Ia~ 76 (116)
+..+|++|+..||+.|+ . ++++ ++..||+.+++.+.+. ++.||++++.+++.|+.
T Consensus 56 ~~~vr~fa~~~L~~~I~---~-------------l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~ 119 (980)
T 3ibv_A 56 KPSTRLICLQTLSEKVR---E-------------WNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFL 119 (980)
T ss_dssp CHHHHHHHHHHHHHHHH---H-------------CCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---h-------------CChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence 78999999999999999 1 6677 9999999999999862 46899999999999999
Q ss_pred ccCCCchhHHHHHHHHhhCCCCh-HHHhHHHHHHHHHHh
Q psy16982 77 HDFPGKWTQIVDKVSIYLQNPDA-TPWFGALLCLYQLVK 114 (116)
Q Consensus 77 ~d~P~~Wp~Ll~~l~~~l~~~~~-~~~~~~L~~L~~l~~ 114 (116)
++||..||++++.+++.+++++. ..+...|.+|..|.+
T Consensus 120 ~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~E 158 (980)
T 3ibv_A 120 QLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGD 158 (980)
T ss_dssp HHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHH
Confidence 99999999999999999987665 445566777765554
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.25 E-value=1.1e-05 Score=67.17 Aligned_cols=96 Identities=15% Similarity=0.218 Sum_probs=80.3
Q ss_pred CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC--
Q psy16982 4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG-- 81 (116)
Q Consensus 4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~-- 81 (116)
+.+..+|.+|+..|.+.+.. ++++....|+..+++.+.+++..+|...+.+++.|+..-.|.
T Consensus 59 d~~~~vR~~A~~~L~~l~~~----------------~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 59 DKNGEVQNLAVKCLGPLVSK----------------VKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp CSSHHHHHHHHHHHHHHHTT----------------SCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred CCCHHHHHHHHHHHHHHHHh----------------CCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 34678999999999887642 455677889999999998888889999999999999876555
Q ss_pred -------chhHHHHHHHHhhC-CCChHHHhHHHHHHHHHHhh
Q psy16982 82 -------KWTQIVDKVSIYLQ-NPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 82 -------~Wp~Ll~~l~~~l~-~~~~~~~~~~L~~L~~l~~~ 115 (116)
.||+++|.+++.+. +++.....+++.+|..+++.
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 49999999999998 57888999999999999864
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.30 E-value=0.0025 Score=53.21 Aligned_cols=100 Identities=11% Similarity=0.080 Sum_probs=80.3
Q ss_pred CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCch
Q psy16982 4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKW 83 (116)
Q Consensus 4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~W 83 (116)
+.|..+|..|.--|.+.+..... .+++..-..+-..+++.|.+.+..+|...+.+++.++..--+..+
T Consensus 17 s~d~~~R~~A~~~L~~~l~~~~~------------~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 17 SSDKDFRFMATNDLMTELQKDSI------------KLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CSSHHHHHHHHHHHHHHTSSSCC------------SCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CCCHhHHHHHHHHHHHHHccccc------------CCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 46789999999999888765422 344455556677788988877789999999999999986544688
Q ss_pred hHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 84 TQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 84 p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
+.+++.+...+.+++.....++..+|..+++.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~ 116 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGE 116 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence 99999999999888887788899999888753
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.13 E-value=0.0013 Score=48.41 Aligned_cols=99 Identities=10% Similarity=-0.010 Sum_probs=73.8
Q ss_pred CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHH-HHHHHHHHHHhcC-cHHHHHHHHHHHHHHHhccCC--
Q psy16982 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKA-MIRDAIVDAVVMA-PEVIRVQLAVCVSNIVKHDFP-- 80 (116)
Q Consensus 5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~-~IK~~ll~~l~~~-~~~i~~~l~~~i~~Ia~~d~P-- 80 (116)
.+..+|..|+..|++.+...+.. .+..-.+. .+-..|+++|.+. +..+|...+.++..++..+-.
T Consensus 32 ~~~~~r~~A~~~L~~l~~~~~~~-----------~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 32 KSPEQQLSATQKFRKLLSKEPNP-----------PIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSSC-----------CHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCC-----------cHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 46789999999999988765432 12111222 4556677777777 689999999999999975311
Q ss_pred Cc--hhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 81 GK--WTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 81 ~~--Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
.. ..++++.+++.+.++++.....++.+|..++.
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~ 136 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAG 136 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcc
Confidence 11 25799999999999999999999999988874
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.95 E-value=0.0062 Score=46.13 Aligned_cols=111 Identities=12% Similarity=-0.023 Sum_probs=76.6
Q ss_pred CCChHHHHHHHHHhhhhhcccccc--------------ccCCCC------C---CccCCCCHhHHHHHHHHHHHHHhcCc
Q psy16982 4 EVDMPVRQAGVVYLKNLITNQWVE--------------KEVDPG------T---PLAFSLHEQDKAMIRDAIVDAVVMAP 60 (116)
Q Consensus 4 ~~~~~vR~~Aai~LKn~i~~~w~~--------------~~~~~~------~---~~~~~i~~~~k~~IK~~ll~~l~~~~ 60 (116)
+.+..+|..|+-.|.+.....-.. .++... . .....+++..+..+...+.+++.+++
T Consensus 98 ~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~ 177 (588)
T 1b3u_A 98 VEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 177 (588)
T ss_dssp SSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSC
T ss_pred CchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCC
Confidence 446789999988888876543110 000000 0 00123455666677777777767777
Q ss_pred HHHHHHHHHHHHHHHhccCCC-chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 61 EVIRVQLAVCVSNIVKHDFPG-KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 61 ~~i~~~l~~~i~~Ia~~d~P~-~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
..+|...+.+++.++..--++ .+++++|.+...+++++......++.+|..+++
T Consensus 178 ~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 232 (588)
T 1b3u_A 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ 232 (588)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 899999999999999774222 358899999999988888888888888888775
No 17
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.86 E-value=0.014 Score=39.97 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=69.5
Q ss_pred CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcc----C-
Q psy16982 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHD----F- 79 (116)
Q Consensus 5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d----~- 79 (116)
....+|..|.-.|++.+... .+ ..+=..++..|.+..+.+|......|..++..- +
T Consensus 110 ~~~~vr~~a~~aL~~~~~~~--------------~~-----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 110 KKPNVVTALREAIDAIYAST--------------SL-----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTTS--------------CH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred CCHHHHHHHHHHHHHHHHcC--------------CH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 35678888888888887631 11 123356677777777899999999999976441 2
Q ss_pred CCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 80 PGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 80 P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
...+|.++|.++..+...+......+..++..+++
T Consensus 171 ~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 171 KKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 25789999999999999999888999999988875
No 18
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.65 E-value=0.011 Score=46.05 Aligned_cols=111 Identities=13% Similarity=0.157 Sum_probs=77.1
Q ss_pred CCChHHHHHHHHHhhhhhcccccc----------ccCCCCC--------CccCCCCHhHHHHHHHHHHHHHhcCcHHHHH
Q psy16982 4 EVDMPVRQAGVVYLKNLITNQWVE----------KEVDPGT--------PLAFSLHEQDKAMIRDAIVDAVVMAPEVIRV 65 (116)
Q Consensus 4 ~~~~~vR~~Aai~LKn~i~~~w~~----------~~~~~~~--------~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~ 65 (116)
+.+..+|.++.+++++..+..-.. +-..... ......+++.-..+-..+..++.+.++.||.
T Consensus 60 s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk 139 (591)
T 2vgl_B 60 TDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRK 139 (591)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHH
Confidence 456788888888888776531110 0000000 0000123334445555677777777789999
Q ss_pred HHHHHHHHHHhccCCCchh--HHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 66 QLAVCVSNIVKHDFPGKWT--QIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 66 ~l~~~i~~Ia~~d~P~~Wp--~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
..+.++..|.+. .|+.++ ++++.+.++++++|+..+.+++.+|..+++.
T Consensus 140 ~A~~al~~i~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 140 TAAVCVAKLHDI-NAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHHHHHHHHHHS-SCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhh-ChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 999999999996 498888 5999999999999999999999999998763
No 19
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.38 E-value=0.029 Score=38.36 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=69.3
Q ss_pred CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhc---cC
Q psy16982 4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVV-MAPEVIRVQLAVCVSNIVKH---DF 79 (116)
Q Consensus 4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~-~~~~~i~~~l~~~i~~Ia~~---d~ 79 (116)
+.+...|..|+..|...+..+-.. ...+. ..+-..|...+. +.+..+|...+.+++.++.. +|
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~------------~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKL------------ENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSB------------CCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred cCCHHHHHHHHHHHHHHHccCCCC------------CCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 457789999999999888763221 11111 234445666674 66678888888888888854 33
Q ss_pred CCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 80 PGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 80 P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
-...+.++|.|+..+.+.+......+..+|..+++
T Consensus 93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34678899999999888888778888888887765
No 20
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.22 E-value=0.034 Score=42.00 Aligned_cols=55 Identities=9% Similarity=-0.145 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 61 EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 61 ~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
..+|...+.++..++..--+..++++++.+.+.++++++.....++.+|..+++.
T Consensus 140 ~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~ 194 (588)
T 1b3u_A 140 FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKV 194 (588)
T ss_dssp HHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 5677777777777776532357889999999999888998889999999988753
No 21
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.87 E-value=0.1 Score=34.39 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=66.5
Q ss_pred ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHH-----HHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982 6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIR-----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP 80 (116)
Q Consensus 6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK-----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P 80 (116)
+..+|..|+-.|.|..... ++.+..+. ..|+.+|.+.+..++...+.++..++..+ |
T Consensus 67 ~~~v~~~a~~~L~~l~~~~-----------------~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~ 128 (210)
T 4db6_A 67 NEQILQEALWALSNIASGG-----------------NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-N 128 (210)
T ss_dssp CHHHHHHHHHHHHHHTTSC-----------------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-H
T ss_pred CHHHHHHHHHHHHHHhcCC-----------------cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC-H
Confidence 5678888888888875321 22222222 35666666677899999999999998743 2
Q ss_pred Cc-----hhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 81 GK-----WTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 81 ~~-----Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
+. =.+.++.+++.+.+++......++.+|..++.
T Consensus 129 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 129 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 22 24578999999999999999999999998875
No 22
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.67 E-value=0.035 Score=36.67 Aligned_cols=94 Identities=18% Similarity=0.137 Sum_probs=67.8
Q ss_pred CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHH-HHH----HHHHHHHHhcCcHHHHHHHHHHHHHHHhcc
Q psy16982 4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDK-AMI----RDAIVDAVVMAPEVIRVQLAVCVSNIVKHD 78 (116)
Q Consensus 4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k-~~I----K~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d 78 (116)
+.+..+|..|+-.|.|..... ++.+ ..+ =..|+++|.+++..++...+.++..|+..+
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~-----------------~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGG-----------------NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSC-----------------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 457789999999999986432 1112 222 245666666677899999999999998643
Q ss_pred CCC----chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 79 FPG----KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 79 ~P~----~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
-.. ...+.++.++..++++|+.....++.+|..++.
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 125 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 125 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHc
Confidence 111 123478999999999999999999999988874
No 23
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.45 E-value=0.13 Score=37.51 Aligned_cols=68 Identities=9% Similarity=-0.022 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHhccC----CCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 48 IRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDF----PGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 48 IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~----P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
+-..+.+.+.+.+..+|.....+++.|+..-- ...-++++|.++..+.++++.....+..+|..+++.
T Consensus 367 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 33444455555667899999999999986422 234589999999999999999999999999999874
No 24
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=95.24 E-value=0.027 Score=44.78 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=67.1
Q ss_pred CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhcc----
Q psy16982 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMA--PEVIRVQLAVCVSNIVKHD---- 78 (116)
Q Consensus 5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~--~~~i~~~l~~~i~~Ia~~d---- 78 (116)
.+..+|+.|..+|++.-. +....+...|++.+.+. +..+|...+.++......+
T Consensus 13 ~d~~~r~~A~~~L~~~~~--------------------~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~ 72 (876)
T 1qgr_A 13 PDRLELEAAQKFLERAAV--------------------ENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDI 72 (876)
T ss_dssp SCHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred CCHHHHHHHHHHHHHHHh--------------------cChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHh
Confidence 467899999999988321 12346778899999875 3688999999999876544
Q ss_pred ---CCCchhHHHHH--------HHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 79 ---FPGKWTQIVDK--------VSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 79 ---~P~~Wp~Ll~~--------l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
++..|+.+-+. +++.+.++++.. ..+..++..+++.
T Consensus 73 ~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~ 119 (876)
T 1qgr_A 73 KAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACA 119 (876)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHh
Confidence 34678876666 888888777666 8888888887753
No 25
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.23 E-value=0.11 Score=40.39 Aligned_cols=55 Identities=15% Similarity=0.087 Sum_probs=43.2
Q ss_pred cCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 58 MAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 58 ~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
++++.+|... +..++..--|+-++.+++.+..++.+.++.....|..++..+++.
T Consensus 97 ~~n~~ir~~A---L~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~ 151 (591)
T 2vgl_B 97 DPNPLIRALA---VRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI 151 (591)
T ss_dssp SSSHHHHHHH---HHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHH---HHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh
Confidence 3446677554 445555546678999999999999999999999999999998874
No 26
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.80 E-value=0.079 Score=35.53 Aligned_cols=93 Identities=14% Similarity=0.117 Sum_probs=67.7
Q ss_pred CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHH----HHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMI----RDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP 80 (116)
Q Consensus 5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~I----K~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P 80 (116)
.+..+|..|+-.|.|.....-. ..+..+ =..|++.|.+.+..++...+.++..++..+ |
T Consensus 14 ~~~~~~~~a~~~L~~l~~~~~~----------------~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~ 76 (252)
T 4hxt_A 14 TDSETQKEAARDLAEIASGPAS----------------AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-D 76 (252)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHH----------------HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-H
T ss_pred CCHHHHHHHHHHHHHHhcCCcH----------------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-h
Confidence 3478999999999998765431 111222 234556666667899999999999998763 2
Q ss_pred Cch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 81 GKW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 81 ~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
..- .+.++.++..+.++++.....++.+|..++.
T Consensus 77 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 115 (252)
T 4hxt_A 77 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 115 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 111 1478999999999999999999999998873
No 27
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=94.76 E-value=0.46 Score=37.60 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhc---cCC
Q psy16982 6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMA--PEVIRVQLAVCVSNIVKH---DFP 80 (116)
Q Consensus 6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~--~~~i~~~l~~~i~~Ia~~---d~P 80 (116)
+..+|..|...|...+.. +... ..+-......|-..+++++.++ +..+|.....++..++.. .+.
T Consensus 148 ~~~~r~~al~~l~~l~~~-~~~~---------~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~ 217 (861)
T 2bpt_A 148 PENVKRASLLALGYMCES-ADPQ---------SQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNME 217 (861)
T ss_dssp CHHHHHHHHHHHHHHHHT-SSTT---------SSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHT
T ss_pred CHHHHHHHHHHHHHHHHc-CChh---------hhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456666666666555543 2210 0011233455666777777776 578999999998887532 222
Q ss_pred --CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982 81 --GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116 (116)
Q Consensus 81 --~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y 116 (116)
..|+.+++.+.+.+++++......++.+|..+++.|
T Consensus 218 ~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~ 255 (861)
T 2bpt_A 218 REGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY 255 (861)
T ss_dssp SHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 247889999999998889998999999999988753
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.55 E-value=0.078 Score=35.89 Aligned_cols=93 Identities=19% Similarity=0.195 Sum_probs=66.8
Q ss_pred CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHH----HHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIR----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP 80 (116)
Q Consensus 5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P 80 (116)
.+..+|..|+-.|++.+...- +..+..++ ..|++.|.+.+..++...+.++..++..+ |
T Consensus 24 ~~~~~~~~a~~~L~~~l~~~~----------------~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~ 86 (252)
T 4db8_A 24 DDMQEQLSATRKFSQILSDGN----------------EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-N 86 (252)
T ss_dssp SCSSHHHHHHHHHHHHHHHHH----------------HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-H
T ss_pred CCHHHHHHHHHHHHHHHcCCC----------------chHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-H
Confidence 456789999999988877611 11122333 34555666666889999999999998743 2
Q ss_pred Cch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 81 GKW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 81 ~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
..- .+.++.+++.+.++++.....++.+|..++.
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 125 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 125 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 211 2478999999999999999999999988764
No 29
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.47 E-value=0.083 Score=41.39 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=43.1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982 50 DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116 (116)
Q Consensus 50 ~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y 116 (116)
..++.++.+++..||....+++..++.. .++.++++.+...+.+.|.+.+..+...+..++.+|
T Consensus 353 ~~i~~~l~d~d~~Ir~~alelL~~l~~~---~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 353 STIVDCLKDLDVSIKRRAMELSFALVNG---NNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp HHHHHGGGSSCHHHHHHHHHHHHHHCCS---SSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHccCCChhHHHHHHHHHHHHccc---ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 3556666666667777777777777664 356677777777776666777777777777777665
No 30
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=94.44 E-value=0.4 Score=38.46 Aligned_cols=67 Identities=6% Similarity=0.000 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHhc----cCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 49 RDAIVDAVVMAPEVIRVQLAVCVSNIVKH----DFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 49 K~~ll~~l~~~~~~i~~~l~~~i~~Ia~~----d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
=..++.++.++...||...+.+++.++.. +....-+++++.++..+.++++.....+..+|..+++.
T Consensus 402 l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 402 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 34566666667789999999999998874 22345578999999999888888888999999888863
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=94.27 E-value=0.04 Score=41.85 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=67.0
Q ss_pred CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHH----HHHHHHHhcC-cHHHHHHHHHHHHHHHhcc-
Q psy16982 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIR----DAIVDAVVMA-PEVIRVQLAVCVSNIVKHD- 78 (116)
Q Consensus 5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK----~~ll~~l~~~-~~~i~~~l~~~i~~Ia~~d- 78 (116)
.+..+|..|+..|++.+...-.. .+ +..++ ..|+++|.+. +..++...+.++..|+..+
T Consensus 99 ~~~~~~~~A~~~L~~ll~~~~~~-----------~~----~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 99 DDMQEQLSATVKFRQILSREHRP-----------PI----DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp SSHHHHHHHHHHHHHHTCCSSSC-----------SH----HHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCc-----------cH----HHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 35788999999999988652110 11 22333 3445555555 5789999999999999853
Q ss_pred -CCCch--hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 79 -FPGKW--TQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 79 -~P~~W--p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
....+ ++.++.++..+.++++.....++.+|..++.
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~ 202 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG 202 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 11122 4678899999998899999999999998874
No 32
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=93.99 E-value=0.15 Score=40.16 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=56.1
Q ss_pred HhHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHhccCCCchh--HHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 42 EQDKAMIRDAIVDAV--VMAPEVIRVQLAVCVSNIVKHDFPGKWT--QIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 42 ~~~k~~IK~~ll~~l--~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp--~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
++--+.+-..+.+++ .+.++.||+..+.++..+.+.+ |+.=| ++++.+..++.+.|+..+.+++.+|..+++.
T Consensus 141 ~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 444455556667777 5666899999999999999864 65444 6677777888888998899999999998863
No 33
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.85 E-value=1.1 Score=31.07 Aligned_cols=100 Identities=5% Similarity=0.029 Sum_probs=66.0
Q ss_pred CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC-Cc-
Q psy16982 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP-GK- 82 (116)
Q Consensus 5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P-~~- 82 (116)
.+..+|..|+-.+......-=.. .+...--..+=..+++.+.+....|+.++..++..|+..--| ..
T Consensus 73 ~n~~v~~~A~~al~~la~~l~~~-----------~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~ 141 (249)
T 2qk1_A 73 ANIQAVALAAQSVELICDKLKTP-----------GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS 141 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCTT-----------TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT
T ss_pred CCHHHHHHHHHHHHHHHHhcccc-----------cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC
Confidence 35567777777776665321000 222111122333555555555578999999999999886423 11
Q ss_pred --hhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 83 --WTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 83 --Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
=+.+++.|+..+++.++....+++.+|..+++.
T Consensus 142 ~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 142 GRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999988864
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=93.80 E-value=0.47 Score=35.76 Aligned_cols=98 Identities=11% Similarity=0.069 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhccCCCch
Q psy16982 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP-EVIRVQLAVCVSNIVKHDFPGKW 83 (116)
Q Consensus 5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~-~~i~~~l~~~i~~Ia~~d~P~~W 83 (116)
.+..+|..|+..|++.....-.. ....-....+=..|+++|.+.+ ..++...+.++..|+... |+.-
T Consensus 86 ~~~~~~~~A~~~L~~l~s~~~~~-----------~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~ 153 (528)
T 4b8j_A 86 DDNNLQLEATTQFRKLLSIERSP-----------PIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENT 153 (528)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSSC-----------CHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCc-----------hHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHH
Confidence 36789999999999987643210 1111111122235566666665 789999999999999842 2111
Q ss_pred h-----HHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 84 T-----QIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 84 p-----~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
. +.++.++..+.++++.....++.+|..++.
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~ 189 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAG 189 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 1 488999999999999999999999998874
No 35
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=93.80 E-value=0.22 Score=36.29 Aligned_cols=93 Identities=14% Similarity=0.096 Sum_probs=65.1
Q ss_pred ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHH----HHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC
Q psy16982 6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAM----IRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG 81 (116)
Q Consensus 6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~----IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~ 81 (116)
+..+|..|+-.|.|.....- +..+.. +=..|++.|.+.+..+|...+.+++.++..--|.
T Consensus 289 ~~~vr~~a~~~L~~l~~~~~----------------~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 352 (450)
T 2jdq_A 289 KESIKKEACWTISNITAGNR----------------AQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAE 352 (450)
T ss_dssp SHHHHHHHHHHHHHHTTSCH----------------HHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHH
T ss_pred CHHHHHHHHHHHHHHHcCCH----------------HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH
Confidence 56788888888887764211 111112 2235666666777899999999999998752232
Q ss_pred ch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 82 KW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 82 ~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
.- .++++.|++.+.+++...+..++.+|..+++
T Consensus 353 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 353 QIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 21 2478899999999898888899999888775
No 36
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=93.65 E-value=0.25 Score=33.03 Aligned_cols=94 Identities=16% Similarity=0.096 Sum_probs=66.5
Q ss_pred CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHH----HHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAM----IRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP 80 (116)
Q Consensus 5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~----IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P 80 (116)
.+..+|..|+-.|.|.....-. ..+.. +=..|++.+.+.+..++...+.++..++..+ |
T Consensus 140 ~~~~~~~~a~~~L~~l~~~~~~----------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~ 202 (252)
T 4hxt_A 140 TDSEVQKEAARALANIASGPDE----------------AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-T 202 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHH----------------HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-H
T ss_pred CCHHHHHHHHHHHHHHHcCCHH----------------HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-H
Confidence 3467888888888887653211 11122 2245566666666899999999999999743 2
Q ss_pred Cc-----hhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 81 GK-----WTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 81 ~~-----Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
.. =.+.++.+++.+.++++.....++.+|..++..
T Consensus 203 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 203 SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 21 135789999999999999999999999998864
No 37
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.57 E-value=0.42 Score=31.46 Aligned_cols=56 Identities=11% Similarity=0.000 Sum_probs=33.6
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 52 IVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 52 ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
|++.+.+++..+|...+.++..+.. |+.++.|...++++++.....+..+|..+..
T Consensus 148 L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 148 LIKALKDEDGWVRQSAADALGEIGG-------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCS-------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCc-------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 3444444446677777766666632 5667777777766677666777777665543
No 38
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.50 E-value=0.14 Score=34.52 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=64.9
Q ss_pred CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhH-HHHHH----HHHHHHHhcCcHHHHHHHHHHHHHHHhccC
Q psy16982 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQD-KAMIR----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDF 79 (116)
Q Consensus 5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~-k~~IK----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~ 79 (116)
.+..+|..|+-.|.|..... +.. ...++ ..|+++|.+.+..++...+.++..++..+
T Consensus 108 ~~~~v~~~a~~~L~~l~~~~-----------------~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~- 169 (252)
T 4db8_A 108 PNEQILQEALWALSNIASGG-----------------NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG- 169 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSC-----------------HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-
T ss_pred CCHHHHHHHHHHHHHhhcCC-----------------chHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-
Confidence 35678888888888874321 111 22333 34555555566899999999999999754
Q ss_pred CCch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 80 PGKW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 80 P~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
|..- .+.++.+++.+.++++.....++.+|..++.
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 2222 3568899999999999999999999998873
No 39
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=93.50 E-value=0.89 Score=32.51 Aligned_cols=93 Identities=11% Similarity=0.073 Sum_probs=65.9
Q ss_pred CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHH-HHHH----HHHHHHHhcC-cHHHHHHHHHHHHHHHhcc
Q psy16982 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDK-AMIR----DAIVDAVVMA-PEVIRVQLAVCVSNIVKHD 78 (116)
Q Consensus 5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k-~~IK----~~ll~~l~~~-~~~i~~~l~~~i~~Ia~~d 78 (116)
.+..+|..|+-.|-|....+- +.+ ..++ ..|+.+|.+. +..++...+.+|+.|++..
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~-----------------~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~ 156 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVA-----------------AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ 156 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCH-----------------HHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHhCCH-----------------HHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCC
Confidence 466889999988888775422 112 2222 3556666654 5789999999999998753
Q ss_pred CCC--ch--hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 79 FPG--KW--TQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 79 ~P~--~W--p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
-|. .. .+.++.|+..+.++|......+..+|..++.
T Consensus 157 ~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~ 196 (296)
T 1xqr_A 157 EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 196 (296)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 221 22 2478889999999999888889999988874
No 40
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.35 E-value=0.45 Score=36.25 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=67.5
Q ss_pred CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhccCCC-
Q psy16982 4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP-EVIRVQLAVCVSNIVKHDFPG- 81 (116)
Q Consensus 4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~-~~i~~~l~~~i~~Ia~~d~P~- 81 (116)
+.+...+..|...+|+.+.+.-. +.+..=.+..+=..|+++|...+ +.++...+.++..|+..+-..
T Consensus 87 s~d~~~q~~a~~~~rklLs~~~~-----------~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 87 SNNLESQLQATQAARKLLSREKQ-----------PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHTSSSC-----------CCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCC-----------chHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 34667888888999988754221 12221122222234555554444 789999999999999764211
Q ss_pred ---chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 82 ---KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 82 ---~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
-=.+.+|.|+.++.+++......++.+|..|+.
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~ 191 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 191 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 112478999999999999999999999988863
No 41
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=93.35 E-value=0.62 Score=35.39 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=68.0
Q ss_pred CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHH----HHHHHhcCc-HHHHHHHHHHHHHHHhcc
Q psy16982 4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDA----IVDAVVMAP-EVIRVQLAVCVSNIVKHD 78 (116)
Q Consensus 4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~----ll~~l~~~~-~~i~~~l~~~i~~Ia~~d 78 (116)
+.+...+.-|...+|+...+.-+ +++ .+.|+.. |+++|...+ +.++...+.++..||...
T Consensus 68 s~d~~~q~~a~~~~rklls~e~~-----------ppi----~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 68 SNNLESQLQATQAARKLLSREKQ-----------PPI----DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSSC-----------CCH----HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHHHHhcCCCC-----------chH----HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 45678888899999998875322 122 2445554 445554444 689999999999998753
Q ss_pred CCCch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 79 FPGKW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 79 ~P~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
++.= .+.+|.++.++.+++.+....++.+|..|+.
T Consensus 133 -~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 133 -SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp -HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 2111 1368999999999999999999999998864
No 42
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=93.03 E-value=0.73 Score=36.20 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=62.6
Q ss_pred CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhccCCCch
Q psy16982 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVV-MAPEVIRVQLAVCVSNIVKHDFPGKW 83 (116)
Q Consensus 5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~-~~~~~i~~~l~~~i~~Ia~~d~P~~W 83 (116)
.+.++|..|.-.|...+..+-. .+.-+..+..++.+|. +++..||....+++..++..+ ++
T Consensus 341 ~~~niry~aL~~l~~l~~~~~~---------------~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~---Nv 402 (621)
T 2vgl_A 341 RETNLRYLALESMCTLASSEFS---------------HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRS---NA 402 (621)
T ss_dssp SCHHHHHHHHHHHHHHTTCTTT---------------HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH---HH
T ss_pred CCcchHHHHHHHHHHHHhccCc---------------HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh---hH
Confidence 3556666666666655544310 1112334566777777 677778888888888887653 68
Q ss_pred hHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982 84 TQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116 (116)
Q Consensus 84 p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y 116 (116)
.+++.++...+...|.+.+..+...+..++.+|
T Consensus 403 ~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~ 435 (621)
T 2vgl_A 403 QQIVAEMLSYLETADYSIREEIVLKVAILAEKY 435 (621)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 888888888887777777777777777777664
No 43
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.96 E-value=0.52 Score=32.69 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC---C----ch-hHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 47 MIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP---G----KW-TQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 47 ~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P---~----~W-p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
.+=+.|+.+|.+...++|.+...+|+.++.. .+ . .- |+++|.+.+.+..++...+..|..||..+++.
T Consensus 146 ~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~-~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 146 DMLKDILEHMKHKTPQIRMECTQLFNASMKE-EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3555677888777789999999999998865 23 2 35 89999999999999999999999999998863
No 44
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=92.80 E-value=0.18 Score=39.52 Aligned_cols=68 Identities=9% Similarity=0.202 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 46 AMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 46 ~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
..+-..+..+|.+.++.||+..+.++..|.+.+ |+.=+++++.+..++.+.|+..+.+++.+|..+++
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~ 208 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCE 208 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHH
Confidence 444556667777777899999999999998864 65555677777788888888888888888888764
No 45
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.74 E-value=0.9 Score=32.31 Aligned_cols=75 Identities=11% Similarity=0.057 Sum_probs=56.8
Q ss_pred CCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982 39 SLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116 (116)
Q Consensus 39 ~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y 116 (116)
.+++.+-..+=-.|++-++++...+|.+.-.++..+... || =.-+++.+.+.+.+.|.....++|.++..+.++|
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-~~--~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-VG--PLKMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-HC--HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-CC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 577777666666777777777778998888888888765 45 1226777777888888888899999998888764
No 46
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=92.71 E-value=0.31 Score=36.74 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHH----HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC
Q psy16982 6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIR----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG 81 (116)
Q Consensus 6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~ 81 (116)
+..+|..|+-.|.|.....- +..+..+. ..|+..|.+.+..++...+.+++.++...-|.
T Consensus 342 ~~~v~~~A~~~L~nl~~~~~----------------~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 405 (528)
T 4b8j_A 342 KKSIKKEACWTISNITAGNK----------------DQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHD 405 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCH----------------HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred cHHHHHHHHHHHHHHHCCCH----------------HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH
Confidence 56788888888888765211 11122222 45666676777899999999999998873333
Q ss_pred chh-----HHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 82 KWT-----QIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 82 ~Wp-----~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
.-+ +.++.++..+.++|+..+..++.+|..+++
T Consensus 406 ~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 406 QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 332 467889999999999999999999998876
No 47
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=92.41 E-value=0.31 Score=30.01 Aligned_cols=54 Identities=9% Similarity=0.035 Sum_probs=33.1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHH
Q psy16982 50 DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLY 110 (116)
Q Consensus 50 ~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~ 110 (116)
..|+.+|.+++..+|...+.++..+.. ++.++.|...+.++|+.....+..+|.
T Consensus 76 ~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 76 EPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344555555556677777777766642 456666777776666666666665554
No 48
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=92.40 E-value=0.12 Score=33.40 Aligned_cols=38 Identities=13% Similarity=-0.054 Sum_probs=33.2
Q ss_pred cCC-CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 78 DFP-GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 78 d~P-~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
++| ..+.++++.|...+...++..++-+|.+|.++|++
T Consensus 41 ~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~ 79 (140)
T 1vdy_A 41 SSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK 79 (140)
T ss_dssp HSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT
T ss_pred hcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh
Confidence 344 34699999999999999999999999999999974
No 49
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=92.19 E-value=0.86 Score=34.58 Aligned_cols=93 Identities=10% Similarity=0.088 Sum_probs=64.7
Q ss_pred CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHH-H----HHHHHHHhcCcHHHHHHHHHHHHHHHhccC
Q psy16982 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMI-R----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDF 79 (116)
Q Consensus 5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~I-K----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~ 79 (116)
.+..+|..|+-.|.|..... ++.+..+ . ..|+..|.+.+..++...+.+|..++...-
T Consensus 328 ~~~~v~~~A~~aL~nl~a~~-----------------~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~ 390 (510)
T 3ul1_B 328 PKTNIQKEATWTMSNITAGR-----------------QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT 390 (510)
T ss_dssp SSHHHHHHHHHHHHHHTTSC-----------------HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHcCc-----------------HHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC
Confidence 45677888888887775421 1222222 2 345666666778999999999998887532
Q ss_pred CCch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 80 PGKW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 80 P~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
++.- .+.++.|++++.+.|+..+..+|.+|..|++
T Consensus 391 ~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 391 VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2221 2357888999999999999999999998875
No 50
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=91.98 E-value=0.93 Score=34.49 Aligned_cols=93 Identities=10% Similarity=0.074 Sum_probs=63.8
Q ss_pred CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHH-----HHHHHHHHHhcCcHHHHHHHHHHHHHHHhccC
Q psy16982 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAM-----IRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDF 79 (116)
Q Consensus 5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~-----IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~ 79 (116)
.+..+|..|+-.|-|..... ++.+.. +=..|+..|.+.+..++...+.+|..++...-
T Consensus 347 ~~~~i~~~a~~aL~nl~~~~-----------------~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~ 409 (529)
T 3tpo_A 347 PKTNIQKEATWTMSNITAGR-----------------QDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT 409 (529)
T ss_dssp SSHHHHHHHHHHHHHHHTSC-----------------HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHhccc-----------------HHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 35567777777777765432 112222 22345666666778899999999998876532
Q ss_pred CCchh-----HHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 80 PGKWT-----QIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 80 P~~Wp-----~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
|+.-. +.++.|+.++.+.|+..+..+|.+|..|++
T Consensus 410 ~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 410 VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 22222 357889999999999999999999988875
No 51
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=91.92 E-value=0.72 Score=34.85 Aligned_cols=93 Identities=15% Similarity=0.113 Sum_probs=65.1
Q ss_pred ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHH----HHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC-
Q psy16982 6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMI----RDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP- 80 (116)
Q Consensus 6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~I----K~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P- 80 (116)
+..+|..|+-.|.|.....- +..+..+ =..|+.+|.+.+..++...+.++..++...-|
T Consensus 354 ~~~vr~~A~~aL~~l~~~~~----------------~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~ 417 (530)
T 1wa5_B 354 KENIKKEACWTISNITAGNT----------------EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR 417 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCH----------------HHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHcCCH----------------HHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 56788888888888764211 1112222 23566666667789999999999999876322
Q ss_pred -Cch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 81 -GKW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 81 -~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
..- .++++.|+..+.++|+..+..++.+|..+++
T Consensus 418 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 418 PDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp THHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 111 2378889999998899888999999988875
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.77 E-value=0.66 Score=30.24 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=22.4
Q ss_pred CcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHH
Q psy16982 59 APEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQ 111 (116)
Q Consensus 59 ~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~ 111 (116)
++..+|...+.+++.+.. ++.++.+...+.++++.....++.+|..
T Consensus 119 ~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGD-------ERAVEPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp SSHHHHHHHHHHHHHHTC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334555555555555432 2344445555555555444555554443
No 53
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.03 E-value=0.8 Score=30.04 Aligned_cols=53 Identities=19% Similarity=0.143 Sum_probs=29.1
Q ss_pred HHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHH
Q psy16982 53 VDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQL 112 (116)
Q Consensus 53 l~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l 112 (116)
++.|.+++..+|.....++..+.. ++.++.+...+.++|+.....++.+|..+
T Consensus 56 ~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 56 IKALKDEDAWVRRAAADALGQIGD-------ERAVEPLIKALKDEDGWVRQSAAVALGQI 108 (211)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHhhCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 333333345566665555555532 34555566666666666666666666554
No 54
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=90.72 E-value=0.68 Score=30.17 Aligned_cols=26 Identities=23% Similarity=0.129 Sum_probs=12.4
Q ss_pred HHHHHHHhhCCCChHHHhHHHHHHHH
Q psy16982 86 IVDKVSIYLQNPDATPWFGALLCLYQ 111 (116)
Q Consensus 86 Ll~~l~~~l~~~~~~~~~~~L~~L~~ 111 (116)
.++.+...+.++++.....++.+|..
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQ 102 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34444444444455444455544443
No 55
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=90.60 E-value=0.46 Score=29.21 Aligned_cols=56 Identities=18% Similarity=0.177 Sum_probs=45.0
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHH
Q psy16982 50 DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQL 112 (116)
Q Consensus 50 ~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l 112 (116)
..|++.|.+++..+|...+.++..+.. ++.++.+...+.++|+.....+..+|..+
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~-------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQD-------ERAVEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCS-------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 677888887778999998888887753 56788888888888888888888888765
No 56
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=89.50 E-value=1.2 Score=30.55 Aligned_cols=62 Identities=11% Similarity=-0.068 Sum_probs=40.9
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHH-hhCCCChHHHhHHHHHHHHHH
Q psy16982 50 DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSI-YLQNPDATPWFGALLCLYQLV 113 (116)
Q Consensus 50 ~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~-~l~~~~~~~~~~~L~~L~~l~ 113 (116)
..|+..+.+++..+|...+.++..+... +...+.+++.+.. .++++++.....++.+|..+.
T Consensus 57 ~~L~~~l~d~~~~vR~~A~~aL~~l~~~--~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~ 119 (280)
T 1oyz_A 57 RLAIEFCSDKNYIRRDIGAFILGQIKIC--KKCEDNVFNILNNMALNDKSACVRATAIESTAQRC 119 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHSCCC--TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccc--cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 4455555555667787777777766532 2456667777664 456667777788888888776
No 57
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=89.12 E-value=1.5 Score=31.34 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHH----HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCC
Q psy16982 6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIR----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPG 81 (116)
Q Consensus 6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~ 81 (116)
+..+|--|+-.|-|.++.+-. ..+..+. ..|+.+|.+.+..++...+-+|+.++..+ |+
T Consensus 138 ~~~v~~~A~~ALsnl~~~~~~----------------~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~-~~ 200 (296)
T 1xqr_A 138 CDTVRVKALFAISCLVREQEA----------------GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-PE 200 (296)
T ss_dssp CHHHHHHHHHHHHHHHTTCHH----------------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GG
T ss_pred CHHHHHHHHHHHHHHHcCCcH----------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-hH
Confidence 456677777777666653221 1112222 25666666677899999999999998762 32
Q ss_pred c-h----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 82 K-W----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 82 ~-W----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
. . .+.++.|+.++.++|+..+..++.+|..+++
T Consensus 201 ~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 201 HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 1 1 2588999999999999999999999988875
No 58
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=89.01 E-value=1.5 Score=32.79 Aligned_cols=62 Identities=18% Similarity=0.056 Sum_probs=51.2
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhccCCCch-----hHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982 51 AIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKW-----TQIVDKVSIYLQNPDATPWFGALLCLYQLV 113 (116)
Q Consensus 51 ~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~ 113 (116)
.++..|.+.+..++...+.++..++..+ |..+ .+.+|.+++++.++++.....+..+|..+.
T Consensus 6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa 72 (457)
T 1xm9_A 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV 72 (457)
T ss_dssp HHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4677888877889999999999998655 4445 457899999999999988889999988876
No 59
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=88.85 E-value=2.3 Score=29.08 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=31.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHH
Q psy16982 51 AIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQL 112 (116)
Q Consensus 51 ~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l 112 (116)
.|++++.+++..+|...+.++..+... =|+.++.+...+.++|+.....++.+|..+
T Consensus 163 ~L~~~l~d~~~~vr~~a~~aL~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 163 LLINLLKDPNGDVRNWAAFAININKYD-----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhccC-----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 344444444455666666666555311 245666666666666666666666665543
No 60
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=88.75 E-value=0.42 Score=39.91 Aligned_cols=96 Identities=16% Similarity=0.264 Sum_probs=69.6
Q ss_pred HHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhcc-CCCchhHH
Q psy16982 9 VRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP-EVIRVQLAVCVSNIVKHD-FPGKWTQI 86 (116)
Q Consensus 9 vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~-~~i~~~l~~~i~~Ia~~d-~P~~Wp~L 86 (116)
+|+.+..++.-++-++.- .++++++..|.+.++.+|.++. --||...+.+++.+.+.- +...=.++
T Consensus 817 ~R~~~L~~lq~~~f~n~f------------~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~l 884 (997)
T 1vsy_5 817 QTKLQLAFIQHFLSAELL------------QLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSL 884 (997)
T ss_dssp SHHHHHHHHHHHHHHHTT------------TSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------------HcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHH
Confidence 677776666666655542 5788899999999999999999 999999999999999885 42322355
Q ss_pred HHHHHHhhCC------------CChHHHhHHHHHHHHHHhhC
Q psy16982 87 VDKVSIYLQN------------PDATPWFGALLCLYQLVKNY 116 (116)
Q Consensus 87 l~~l~~~l~~------------~~~~~~~~~L~~L~~l~~~y 116 (116)
+..+...+.. .+....++|...|..++..|
T Consensus 885 i~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~ 926 (997)
T 1vsy_5 885 IERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAF 926 (997)
T ss_dssp HHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhC
Confidence 5555554422 11157899999999887643
No 61
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=88.57 E-value=1.5 Score=32.46 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 46 AMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 46 ~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
+.+=..+-++|.+.++.||+..+.++..+...+ |+-=..+++.+.+.+.+.|+-.++.|+.+|+.+++
T Consensus 138 ~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 138 QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-FDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 344445556666677889999999888876553 43223456677777888888888999999998875
No 62
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=88.14 E-value=1.4 Score=36.78 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=57.1
Q ss_pred CCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCC----CChHHHhHHHHHHH
Q psy16982 39 SLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQN----PDATPWFGALLCLY 110 (116)
Q Consensus 39 ~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~----~~~~~~~~~L~~L~ 110 (116)
..++-++..+++ |++.-.+.-..||.....++..+.+. ||+.++.++|.+++.|+. .|.+...|||++|.
T Consensus 126 ~~t~l~~~ll~d-L~~Ls~S~Y~~VR~~AQ~~L~~~~~~-~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~ 199 (997)
T 1vsy_5 126 KASKLENLLLVD-IIQLATSLYPDIYKPAQGTLVHCMKQ-LVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLL 199 (997)
T ss_dssp CCCSHHHHHHHH-HHHHHTSSCHHHHHHHHHHHHHHHTT-BTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTT
T ss_pred CCChHHHHHHHH-HHHHhcCchHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHh
Confidence 477788888864 45544444589999999999999988 899999999999998865 47788999999876
No 63
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=87.84 E-value=5.4 Score=30.92 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=60.9
Q ss_pred CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHH-----HHHHHHHHHhcCcHHHHHHHHHHHHHHHhccC
Q psy16982 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAM-----IRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDF 79 (116)
Q Consensus 5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~-----IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~ 79 (116)
.+..+|..|+-.|++..... +.+.. .=..|+++|.+.+..++...+.++..++..+-
T Consensus 69 ~~~~~~~~A~~~L~~Ls~~~------------------~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~ 130 (644)
T 2z6h_A 69 NDVETARCTAGTLHNLSHHR------------------EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 130 (644)
T ss_dssp CCHHHHHHHHHHHHHHTTSH------------------HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHhcCh------------------hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc
Confidence 35677777877777654321 11111 22356666666778999999999999998752
Q ss_pred CCc--h--hHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982 80 PGK--W--TQIVDKVSIYLQNPDATPWFGALLCLYQLV 113 (116)
Q Consensus 80 P~~--W--p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~ 113 (116)
+.. - .+.++.++..+.+++......++.+|..++
T Consensus 131 ~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La 168 (644)
T 2z6h_A 131 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168 (644)
T ss_dssp THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH
Confidence 211 1 468899999999988766666666776655
No 64
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=87.29 E-value=5.4 Score=29.74 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHH-HHHH----HHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982 6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDK-AMIR----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP 80 (116)
Q Consensus 6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k-~~IK----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P 80 (116)
+..+|..|+-.|+|.....- +.| ..++ ..|+++|.+.+..++...+.++..|+... |
T Consensus 15 ~~~~q~~A~~~L~~l~~~~~-----------------~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~ 76 (457)
T 1xm9_A 15 DEKYQAIGAYYIQHTCFQDE-----------------SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-T 76 (457)
T ss_dssp CTHHHHHHHHHHHHHTSSCS-----------------SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-H
T ss_pred CHHHHHHHHHHHHHHHcCCh-----------------HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-H
Confidence 56789999999999763211 112 2333 34566666666889999999999999852 2
Q ss_pred CchhH-----HHHHHHHhhC-CCChHHHhHHHHHHHHHHh
Q psy16982 81 GKWTQ-----IVDKVSIYLQ-NPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 81 ~~Wp~-----Ll~~l~~~l~-~~~~~~~~~~L~~L~~l~~ 114 (116)
+.-.. -+|.+++++. +++++....+..+|..++.
T Consensus 77 ~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~ 116 (457)
T 1xm9_A 77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS 116 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhc
Confidence 33333 4889999998 7888888888888887763
No 65
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=87.18 E-value=1.8 Score=35.40 Aligned_cols=71 Identities=8% Similarity=0.180 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHhccCC-CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 43 QDKAMIRDAIVDAVVMA---PEVIRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 43 ~~k~~IK~~ll~~l~~~---~~~i~~~l~~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
+....+.+.+++.|.++ .+.+|...+.+++.++.. ++ +..+.+++.+++.+.+++......|..+|..+|+
T Consensus 451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~-~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ-LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG-SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 44455667788888776 678999999999999875 45 6788899999999988777777788888888876
No 66
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=86.92 E-value=3.6 Score=33.71 Aligned_cols=103 Identities=11% Similarity=0.050 Sum_probs=68.7
Q ss_pred CChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHhccCC-C
Q psy16982 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMA--PEVIRVQLAVCVSNIVKHDFP-G 81 (116)
Q Consensus 5 ~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~--~~~i~~~l~~~i~~Ia~~d~P-~ 81 (116)
.+..+|..|++.|-+.-...= . +.. -..+.+..-..+=..+...|.++ +..++...+.+++.+....-- .
T Consensus 342 ~~~~vr~~Al~~L~kl~s~~~-~-d~~-----~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~ 414 (810)
T 3now_A 342 KNDGIRVRALVGLCKLGSYGG-Q-DAA-----IRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKE 414 (810)
T ss_dssp SCHHHHHHHHHHHHHHHTTTT-T-TTS-----CCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHH
T ss_pred CCHHHHHHHHHHHHHhccccc-c-Ccc-----ccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 346788899987766532111 0 100 01233322233334667777777 568999999999999754211 2
Q ss_pred ch---hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 82 KW---TQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 82 ~W---p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
.| ++++|.|++++.++|....++++.+|.-|+.
T Consensus 415 ~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~ 450 (810)
T 3now_A 415 KLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCN 450 (810)
T ss_dssp HHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred HHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcC
Confidence 33 4799999999999999999999999998875
No 67
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=86.53 E-value=2.8 Score=29.74 Aligned_cols=66 Identities=24% Similarity=0.165 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHhc-cCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982 48 IRDAIVDAVVMAPEVIRVQLAVCVSNIVKH-DFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLV 113 (116)
Q Consensus 48 IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~-d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~ 113 (116)
|.+.+...+.+.+..++...-.++..|+.+ +=|+-|.+.+..+-.+++++|+..+.-||..|..+.
T Consensus 151 V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 151 VRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 344444444333345555555555555543 334566666666666666666666666666665543
No 68
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=86.24 E-value=5.7 Score=27.95 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 47 MIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 47 ~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
.+=..++++..+.+..+|+.++..|..+++.+ |+-=+..++.|..++..+|+..+..++.|...+++
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYK 119 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34445566544455789999999999999775 67778888999899988888877777777666543
No 69
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=86.07 E-value=2.7 Score=31.19 Aligned_cols=56 Identities=11% Similarity=-0.016 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHHHHHhccCC-CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 59 APEVIRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 59 ~~~~i~~~l~~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
.+..++...+.++..++...-+ ..-.+.++.+++.+.++|++....+..+|..++.
T Consensus 239 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 239 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 4567888889999999876422 2335899999999999999988899999888764
No 70
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=83.59 E-value=7.6 Score=31.27 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhc-----Cc---HHHHHHHHHHHHHHHhc
Q psy16982 6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVM-----AP---EVIRVQLAVCVSNIVKH 77 (116)
Q Consensus 6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~-----~~---~~i~~~l~~~i~~Ia~~ 77 (116)
.-.+|.-||+-||-.++.+-... |. ....+. --.+|-..+-+|.+ ++ .+||-..|++++.+ .
T Consensus 187 ~WEiRHGAALGLREILR~hG~GA----GR--~~~~N~--DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~- 256 (800)
T 3oc3_A 187 EWYKRHGAFLAFAAMFSEIDNGG----DI--QIRVDS--KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-Y- 256 (800)
T ss_dssp SHHHHHHHHHHHHHHHHHCC--------C--CCCCCT--THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-T-
T ss_pred chhhhhHHHHHHHHHHHHhccCC----ce--eccccH--HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-H-
Confidence 56899999999999999875321 10 011221 23444444444433 12 58999999999999 4
Q ss_pred cCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHH
Q psy16982 78 DFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQL 112 (116)
Q Consensus 78 d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l 112 (116)
-.|.. -..+..++..+....-+..+|||..|+++
T Consensus 257 hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL 290 (800)
T 3oc3_A 257 PLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL 290 (800)
T ss_dssp TTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT
T ss_pred hCChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH
Confidence 46766 34566666555677789999999999987
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=83.03 E-value=4.6 Score=27.90 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHH
Q psy16982 59 APEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQ 111 (116)
Q Consensus 59 ~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~ 111 (116)
.+++++-.++.++..|++. +|.--|+.+..+.+++++.|......+|..+..
T Consensus 119 gd~kikIn~~yaLeeIara-nP~l~~~v~rdi~smltskd~~Dkl~aLnFi~a 170 (253)
T 2db0_A 119 GDEKTKINVSYALEEIAKA-NPMLMASIVRDFMSMLSSKNREDKLTALNFIEA 170 (253)
T ss_dssp CSHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHT
T ss_pred CCccceecHHHHHHHHHHh-ChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 3578888889999999888 577777777888888888777666777766554
No 72
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=82.58 E-value=5.3 Score=29.88 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=47.0
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982 51 AIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLV 113 (116)
Q Consensus 51 ~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~ 113 (116)
.|+++-...+..+|+.++..|...+..+ ++.=+..++.|..++.++|+..+..++.|...++
T Consensus 67 ~il~f~~d~~~~vRk~~a~FieEa~~~~-~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 67 EIIAFQADKSIEVRKFVIGFIEEACKRD-IELLLKLIANLNMLLRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp HHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3444444455789999999999999875 4556899999999998888877777777665554
No 73
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=82.39 E-value=5.5 Score=30.88 Aligned_cols=56 Identities=11% Similarity=-0.016 Sum_probs=44.9
Q ss_pred CcHHHHHHHHHHHHHHHhccCC-CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 59 APEVIRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 59 ~~~~i~~~l~~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
.+..++...+.++..+++..-+ ..-.++++.|++.+.++|......+..+|..++.
T Consensus 236 ~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 236 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 4568888899999999876322 2335899999999999999888889999988765
No 74
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=81.74 E-value=14 Score=27.32 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHH-H----HHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982 6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMI-R----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP 80 (116)
Q Consensus 6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~I-K----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P 80 (116)
+..+|..|+-.|++.... ++.+..+ + ..|++.|.+.+..++...+.++..++..+-.
T Consensus 73 ~~~~~~~a~~~L~~ls~~------------------~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 134 (529)
T 1jdh_A 73 DVETARCTAGTLHNLSHH------------------REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134 (529)
T ss_dssp CHHHHHHHHHHHHHHTTS------------------HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHcC------------------chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc
Confidence 566777788777774332 1122222 2 2555666666788999999999999887422
Q ss_pred C--c--hhHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982 81 G--K--WTQIVDKVSIYLQNPDATPWFGALLCLYQLV 113 (116)
Q Consensus 81 ~--~--Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~ 113 (116)
. . =.+.+|.+++.+.+++......+..+|..++
T Consensus 135 ~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la 171 (529)
T 1jdh_A 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1 1 1468899999999888776666666665544
No 75
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=81.34 E-value=18 Score=28.44 Aligned_cols=93 Identities=12% Similarity=0.149 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHH-----HHHHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982 6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMI-----RDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFP 80 (116)
Q Consensus 6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~I-----K~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P 80 (116)
...++-.|+-.|.|.....|.. +...+..| -..|+++|...+..++...+.+|+.++.. |
T Consensus 322 ~~~v~E~Aa~AL~nL~ag~~~~-------------~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~--~ 386 (584)
T 3l6x_A 322 TPAILEASAGAIQNLCAGRWTY-------------GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD--A 386 (584)
T ss_dssp CHHHHHHHHHHHHHHHSSCSHH-------------HHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT--C
T ss_pred CHHHHHHHHHHHHHHHcCCccc-------------cHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--h
Confidence 4567777888888888776642 12222233 34456666667789999999999999875 4
Q ss_pred Cchh----HHHHHHHHhhCCC--------ChHHHhHHHHHHHHHH
Q psy16982 81 GKWT----QIVDKVSIYLQNP--------DATPWFGALLCLYQLV 113 (116)
Q Consensus 81 ~~Wp----~Ll~~l~~~l~~~--------~~~~~~~~L~~L~~l~ 113 (116)
..+. +.+|.|+++|.++ +.+.+..++.+|+.|+
T Consensus 387 ~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~ 431 (584)
T 3l6x_A 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVI 431 (584)
T ss_dssp SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHh
Confidence 5553 5789999999876 2456778888888765
No 76
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=81.25 E-value=12 Score=26.31 Aligned_cols=74 Identities=12% Similarity=0.049 Sum_probs=50.8
Q ss_pred CHhHHHHHHHHHHHHHhcC---c-HHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 41 HEQDKAMIRDAIVDAVVMA---P-EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 41 ~~~~k~~IK~~ll~~l~~~---~-~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
.++....-|+.+++.|.+. + ..--.+|.++-..+...| |.-.|++++.+++...+.+.+...-+...+.+.|++
T Consensus 6 ~~~~~~~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~d-p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~ 83 (257)
T 3gs3_A 6 TDEKTATARAKVVDWCNELVIASPSTKCELLAKVQETVLGSC-AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV 83 (257)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTT-GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccC-HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence 3456677788888888763 2 223345555555566656 889999999999987667777777777777777764
No 77
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=81.05 E-value=17 Score=28.14 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhH
Q psy16982 6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQ 85 (116)
Q Consensus 6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~ 85 (116)
+...+++||-.+-++++.+-. +. +++ =+.++.+.-+++..||.|...-+-.+++.|+ =+-
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~-------------l~--~~A--i~a~lDLcEDed~~IR~qaik~Lp~~ck~~~---i~k 100 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPE-------------LA--DSA--INAQLDLCEDEDVSIRRQAIKELPQFATGEN---LPR 100 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGG-------------GH--HHH--HHHHHHHHTCSSHHHHHHHHHHGGGGCCTTC---HHH
T ss_pred CHHHHHHHHHHHHHHHhhChh-------------hH--HHH--HHHHHHHHhcccHHHHHHHHHhhHHHhhhhh---hhh
Confidence 467788888776666655432 22 111 1456677777788999998888888887732 477
Q ss_pred HHHHHHHhhCCCChHH
Q psy16982 86 IVDKVSIYLQNPDATP 101 (116)
Q Consensus 86 Ll~~l~~~l~~~~~~~ 101 (116)
+.+.|+|+++++++..
T Consensus 101 iaDvL~QlLqtdd~~E 116 (507)
T 3u0r_A 101 VADILTQLLQTDDSAE 116 (507)
T ss_dssp HHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHhccchHH
Confidence 8889999999887643
No 78
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=80.63 E-value=7 Score=26.03 Aligned_cols=46 Identities=17% Similarity=0.326 Sum_probs=34.6
Q ss_pred HHHHHHhccCC-CchhHHHHHHHHhh-CC--CChHHHhHHHHHHHHHHhh
Q psy16982 70 CVSNIVKHDFP-GKWTQIVDKVSIYL-QN--PDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 70 ~i~~Ia~~d~P-~~Wp~Ll~~l~~~l-~~--~~~~~~~~~L~~L~~l~~~ 115 (116)
.+..||..-|- ..++++++.|...+ +. .+...++-+|.+|.+|++.
T Consensus 54 ~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~n 103 (176)
T 1xgw_A 54 LMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRN 103 (176)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh
Confidence 34555554443 78899999999885 43 3678899999999999863
No 79
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=80.55 E-value=7.8 Score=28.24 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=53.1
Q ss_pred CHhHHHHHHH-----HHHHHHhcCcHHHHHHHHHHHHHHHhccCCCch-----hHHHHHHHHhhCCCChHHHhHHHHHHH
Q psy16982 41 HEQDKAMIRD-----AIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKW-----TQIVDKVSIYLQNPDATPWFGALLCLY 110 (116)
Q Consensus 41 ~~~~k~~IK~-----~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~ 110 (116)
+++.|+.+++ .|++.|.+.+..++...+-+|..++..+ |+.= -+.+|.|++++.+++......+..+|.
T Consensus 252 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~ 330 (354)
T 3nmw_A 252 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330 (354)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4555665553 3555555566789999999999998543 2211 246899999999999988999999998
Q ss_pred HHHh
Q psy16982 111 QLVK 114 (116)
Q Consensus 111 ~l~~ 114 (116)
.++.
T Consensus 331 nL~~ 334 (354)
T 3nmw_A 331 NLMA 334 (354)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8875
No 80
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=80.41 E-value=4.7 Score=32.36 Aligned_cols=56 Identities=11% Similarity=-0.016 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHHHHHHHhccCC-CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 59 APEVIRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 59 ~~~~i~~~l~~~i~~Ia~~d~P-~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
.+..++...+.++..++...-+ ..-.++++.|++.+.++|......+..+|..++.
T Consensus 372 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 372 PSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 428 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred CchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 4467778888899999876422 2347899999999999999988999999988764
No 81
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=78.92 E-value=5.1 Score=25.76 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=32.5
Q ss_pred HHHHHhccCC-CchhHHHHHHHHhhCCC--ChHHHhHHHHHHHHHHh
Q psy16982 71 VSNIVKHDFP-GKWTQIVDKVSIYLQNP--DATPWFGALLCLYQLVK 114 (116)
Q Consensus 71 i~~Ia~~d~P-~~Wp~Ll~~l~~~l~~~--~~~~~~~~L~~L~~l~~ 114 (116)
+..||..-|- ...+++++.|...+.+. +-..++-+|.+|.++++
T Consensus 26 m~eIa~~T~~~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~ 72 (144)
T 1eyh_A 26 MSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIK 72 (144)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHH
Confidence 3344443332 57889999999988764 55689999999999886
No 82
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=78.69 E-value=8.2 Score=26.13 Aligned_cols=62 Identities=21% Similarity=0.336 Sum_probs=43.9
Q ss_pred HHHHHHHhcCc---HHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhh----CC--CChHHHhHHHHHHHHH
Q psy16982 50 DAIVDAVVMAP---EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYL----QN--PDATPWFGALLCLYQL 112 (116)
Q Consensus 50 ~~ll~~l~~~~---~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l----~~--~~~~~~~~~L~~L~~l 112 (116)
..++.|+.... ..+|...|.+++.|++. |....|+|-+.+...+ .+ .+....|||+..|..+
T Consensus 90 psvLtCll~k~l~~~~LRd~AA~lL~~I~~~-~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 90 PSLLTCVIGKSIVDDDVRKMSADIVKYIYDT-YSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH-HTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-hCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 34666666532 47999999999999988 5566666666665543 32 3567899999888765
No 83
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=78.11 E-value=14 Score=25.47 Aligned_cols=73 Identities=8% Similarity=0.060 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982 43 QDKAMIRDAIVDAVVMAP-EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116 (116)
Q Consensus 43 ~~k~~IK~~ll~~l~~~~-~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y 116 (116)
+-.+-.+..|+-.+..+. -.+-..++.++..+|+.- |+.-...+|.++....-+|+....+.-++|..|++.|
T Consensus 65 el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaran 138 (253)
T 2db0_A 65 DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKAN 138 (253)
T ss_dssp GGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhC
Confidence 344556666776666554 466677888889998874 6666678888888888899988888889999988765
No 84
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=78.00 E-value=2.8 Score=33.69 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=39.3
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 51 AIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 51 ~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
.+++.|.+++..+|..++..+..+.+.+.+ .+.++.|+.++.++|+.....++.+|..+++
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~---~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~ 179 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQDDAELA---TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK 179 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCccHHHHHHHHHHHHhhhHHHHH---hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC
Confidence 456666666566777777777766554443 4566667777778888888999999998875
No 85
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=76.03 E-value=3.1 Score=28.75 Aligned_cols=64 Identities=11% Similarity=-0.085 Sum_probs=45.6
Q ss_pred HHHHHHhcCcH--HHHHHHHHHHHHHHhccCCCch----hHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 51 AIVDAVVMAPE--VIRVQLAVCVSNIVKHDFPGKW----TQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 51 ~ll~~l~~~~~--~i~~~l~~~i~~Ia~~d~P~~W----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
.+++.|.+.+. .++...+.++..++..+-+.+. -+.+|.|+++|.+++.+....+..+|.-|..
T Consensus 12 ~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 12 RAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp HHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 45666666554 6777777788888866533222 2468999999999998888888888887753
No 86
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=75.89 E-value=11 Score=28.47 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=53.2
Q ss_pred CHhHHHHHHH-----HHHHHHhcCcHHHHHHHHHHHHHHHhccCCCch-----hHHHHHHHHhhCCCChHHHhHHHHHHH
Q psy16982 41 HEQDKAMIRD-----AIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKW-----TQIVDKVSIYLQNPDATPWFGALLCLY 110 (116)
Q Consensus 41 ~~~~k~~IK~-----~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~W-----p~Ll~~l~~~l~~~~~~~~~~~L~~L~ 110 (116)
+++.++.|++ .|++.|.+.+..++...+-+|..++..+ |+.= -+.++.|++++.+++......+..+|.
T Consensus 368 ~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~ 446 (458)
T 3nmz_A 368 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 446 (458)
T ss_dssp CHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC-HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4555666553 3555555566789999999999998543 2211 245888999999999998999999999
Q ss_pred HHHh
Q psy16982 111 QLVK 114 (116)
Q Consensus 111 ~l~~ 114 (116)
.++.
T Consensus 447 nL~~ 450 (458)
T 3nmz_A 447 NLMA 450 (458)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8875
No 87
>1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens}
Probab=74.88 E-value=2.9 Score=19.86 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=14.7
Q ss_pred CCCHhHHHHHHHHHHHH
Q psy16982 39 SLHEQDKAMIRDAIVDA 55 (116)
Q Consensus 39 ~i~~~~k~~IK~~ll~~ 55 (116)
.++++.|+.+|..++..
T Consensus 8 siseetkqklk~~ils~ 24 (35)
T 1n6j_G 8 SISEETKQKLKSAILSA 24 (35)
T ss_dssp CCCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHhh
Confidence 69999999999988754
No 88
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=74.88 E-value=6.6 Score=25.36 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=29.5
Q ss_pred CchhHHHHHHHHhhCCC--ChHHHhHHHHHHHHHHhh
Q psy16982 81 GKWTQIVDKVSIYLQNP--DATPWFGALLCLYQLVKN 115 (116)
Q Consensus 81 ~~Wp~Ll~~l~~~l~~~--~~~~~~~~L~~L~~l~~~ 115 (116)
...++.++.|...+... +-..++-+|.+|.++++.
T Consensus 55 ~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~n 91 (148)
T 1inz_A 55 VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKT 91 (148)
T ss_dssp HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHh
Confidence 67889999999988864 567899999999998863
No 89
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=74.02 E-value=5.7 Score=31.26 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=49.2
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhccCCCch----hHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982 51 AIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKW----TQIVDKVSIYLQNPDATPWFGALLCLYQLV 113 (116)
Q Consensus 51 ~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~W----p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~ 113 (116)
.|++.|.+.+..++...+.++..++..+-+... -.-+|.|+++|.+++.+....+..+|..|+
T Consensus 52 ~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa 118 (584)
T 3l6x_A 52 EVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS 118 (584)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 567778777788888888999999875422211 246899999999999999999999988776
No 90
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=73.75 E-value=6.7 Score=32.13 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=47.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhc-c-----CCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 51 AIVDAVVMAPEVIRVQLAVCVSNIVKH-D-----FPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 51 ~ll~~l~~~~~~i~~~l~~~i~~Ia~~-d-----~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
.|+.++...+..++...+-+++.|+.. + ..+. ...++.|++++.++|....+.|+.++..++.
T Consensus 669 ~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~-~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 669 FLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI-ASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH-cCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 444555556678999999999999873 1 1122 4577899999999999999999999987763
No 91
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=73.58 E-value=23 Score=25.66 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=57.4
Q ss_pred hHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHH--H----HHHHHHhcCcHHHHHHHHHHHHHHHhccCC
Q psy16982 7 MPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIR--D----AIVDAVVMAPEVIRVQLAVCVSNIVKHDFP 80 (116)
Q Consensus 7 ~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK--~----~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P 80 (116)
..+|..|+-.|.|.... +++.|..|. . .|++.|.+.+..++.+.+.++..++..+-+
T Consensus 98 ~~~q~~Aa~aL~nLa~~-----------------~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~ 160 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFG-----------------DVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 160 (354)
T ss_dssp HHHHHHHHHHHHHHTSS-----------------CHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHHcC-----------------CHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCH
Confidence 45777788888877533 223444442 2 344455556688999999999999875222
Q ss_pred Cch-----hHHHHHHHHh-hCCCChHHHhHHHHHHHHHH
Q psy16982 81 GKW-----TQIVDKVSIY-LQNPDATPWFGALLCLYQLV 113 (116)
Q Consensus 81 ~~W-----p~Ll~~l~~~-l~~~~~~~~~~~L~~L~~l~ 113 (116)
..- -+.+|.|++. +.+++......++.+|..+.
T Consensus 161 ~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs 199 (354)
T 3nmw_A 161 NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 199 (354)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 111 1357888886 45667777777777776654
No 92
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=73.49 E-value=20 Score=28.88 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=65.3
Q ss_pred ChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhH
Q psy16982 6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQ 85 (116)
Q Consensus 6 ~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~ 85 (116)
.-++|+.+-+-||-. . + .+.. ...+-..++.+|.+.+.-||...|.++.-|+ .|+.-+.
T Consensus 276 ~WEVRHGGLLGLKYL-----~--D---------LL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~ 334 (800)
T 3oc3_A 276 DWQVQFSGLIALGYL-----K--E---------FVED--KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDL 334 (800)
T ss_dssp CHHHHHHHHHHHHHT-----G--G---------GCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHH
T ss_pred CeeehhhhHHHHHHH-----H--H---------HHHH--HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHH
Confidence 456777777777755 1 0 1211 5677778888888888999999999999999 6889999
Q ss_pred HHHHHHHhhCCCCh--HHHhHHHHHHHHHHh
Q psy16982 86 IVDKVSIYLQNPDA--TPWFGALLCLYQLVK 114 (116)
Q Consensus 86 Ll~~l~~~l~~~~~--~~~~~~L~~L~~l~~ 114 (116)
++..+.++|.+.|. ..+-+.+..|..+|.
T Consensus 335 LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s 365 (800)
T 3oc3_A 335 VLEKCWKNIESEELISVSKTSNLSLLTKIYR 365 (800)
T ss_dssp HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccchhhHHHHHHHHHHHc
Confidence 99999999887543 345566777777664
No 93
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=73.42 E-value=7.8 Score=25.08 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=32.8
Q ss_pred HHHHHhccCC-CchhHHHHHHHHhhCCC---ChHHHhHHHHHHHHHHh
Q psy16982 71 VSNIVKHDFP-GKWTQIVDKVSIYLQNP---DATPWFGALLCLYQLVK 114 (116)
Q Consensus 71 i~~Ia~~d~P-~~Wp~Ll~~l~~~l~~~---~~~~~~~~L~~L~~l~~ 114 (116)
+..||..-|- ...+++++.|...+... +...++-+|.+|.++++
T Consensus 32 m~eIa~~T~~~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~ 79 (150)
T 3onk_A 32 MDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIK 79 (150)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHH
Confidence 4455555443 57788999998887642 57889999999999886
No 94
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=72.20 E-value=13 Score=30.70 Aligned_cols=54 Identities=9% Similarity=0.032 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhcc--CCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 62 VIRVQLAVCVSNIVKHD--FPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 62 ~i~~~l~~~i~~Ia~~d--~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
.++..++.+++..+..- -|...+.+++.+++.+.++++.....|-.+|..+|+.
T Consensus 515 ~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 515 VVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 34556888888776542 2345677888888888877788888888899888874
No 95
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=69.26 E-value=14 Score=25.36 Aligned_cols=54 Identities=11% Similarity=0.080 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhccCCC--c----hhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 61 EVIRVQLAVCVSNIVKHDFPG--K----WTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 61 ~~i~~~l~~~i~~Ia~~d~P~--~----Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
++++......+..+...-.+. . -+.+++.+..++++.|++.+..|..++..+.+
T Consensus 153 pkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 153 PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 456666555555554431111 1 13355556666677777777777777666553
No 96
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=65.90 E-value=54 Score=26.79 Aligned_cols=77 Identities=12% Similarity=0.139 Sum_probs=57.4
Q ss_pred cCCCCHhHHHHHHHHHHHH----HhcCcHHHHHHHHHHHHHHHhccCC---C-chhHHHHHHHHhhCC---CChHHHhHH
Q psy16982 37 AFSLHEQDKAMIRDAIVDA----VVMAPEVIRVQLAVCVSNIVKHDFP---G-KWTQIVDKVSIYLQN---PDATPWFGA 105 (116)
Q Consensus 37 ~~~i~~~~k~~IK~~ll~~----l~~~~~~i~~~l~~~i~~Ia~~d~P---~-~Wp~Ll~~l~~~l~~---~~~~~~~~~ 105 (116)
...++++++..+=+.+++. +.+.+..+..-...++..+|-.+ | + -=|.+++.+...+++ ..++++-++
T Consensus 325 ~~~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~-P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~a 403 (799)
T 1vsy_4 325 GICLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELD-PSNAYLIYDKILIDLYDTLADQFINSRHRIISS 403 (799)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTC-CTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcC-CCccceehHHHHHHHHHHhccccccchhHHHHH
Confidence 3578888876555555544 44556788899999999999987 6 3 447788888888877 567888888
Q ss_pred HHHHHHHHh
Q psy16982 106 LLCLYQLVK 114 (116)
Q Consensus 106 L~~L~~l~~ 114 (116)
|.+|..++.
T Consensus 404 L~~l~~~~r 412 (799)
T 1vsy_4 404 LKQFTRVIR 412 (799)
T ss_dssp HHHHHTTHH
T ss_pred HHHHHHHHH
Confidence 988877664
No 97
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=65.86 E-value=29 Score=23.71 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982 59 APEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116 (116)
Q Consensus 59 ~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y 116 (116)
....++.....++..++....|. ..+++.+...+.+.++..+..++.+|..+++.|
T Consensus 115 ~k~~~~~~a~~~l~~~~~~~~~~--~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 115 SRATTKTQSMSCILSLCGLDTSI--TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSSS--HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 34678888778887777766542 357788888899999999999999999988764
No 98
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=65.25 E-value=30 Score=23.68 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHH-----HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCc
Q psy16982 8 PVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIR-----DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGK 82 (116)
Q Consensus 8 ~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK-----~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~ 82 (116)
.++..|+-.++|....+-. .|..|. ..|++.|.+.+..++...+.++..|+..+ ++.
T Consensus 25 ~~q~~Aa~~l~~L~~~~~~-----------------~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~-~~n 86 (233)
T 3tt9_A 25 SRISAAATFIQHECFQKSE-----------------ARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED-NDN 86 (233)
T ss_dssp HHHHHHHHHHHHHHHHCHH-----------------HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHHHHHHHHHHHcCCcH-----------------HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHH
Confidence 6777777788887654321 122221 35666666667899999999999998742 222
Q ss_pred hh-----HHHHHHHHhhC-CCChHHHhHHHHHHHHH
Q psy16982 83 WT-----QIVDKVSIYLQ-NPDATPWFGALLCLYQL 112 (116)
Q Consensus 83 Wp-----~Ll~~l~~~l~-~~~~~~~~~~L~~L~~l 112 (116)
.. +-+|.|++++. +++.+....+..+|..+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL 122 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 22 46888999997 56777766666666554
No 99
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=64.13 E-value=28 Score=25.60 Aligned_cols=55 Identities=7% Similarity=-0.073 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHHHHHHhccCC----CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 60 PEVIRVQLAVCVSNIVKHDFP----GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 60 ~~~i~~~l~~~i~~Ia~~d~P----~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
+....+..-.++..+..+++- -.+|+++..+.+.+.+.+...+..+|.+|..+|+
T Consensus 173 ~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~ 231 (339)
T 3dad_A 173 DHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVE 231 (339)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHc
Confidence 345555555556666555221 1368899999999998888889999999988875
No 100
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=63.24 E-value=19 Score=27.75 Aligned_cols=74 Identities=11% Similarity=0.190 Sum_probs=51.9
Q ss_pred CCCHhHHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHHHHhccCCCchh-----HHHHHHHHhhCCCChHHHh
Q psy16982 39 SLHEQDKAMIRDAIVDAVVMA----------PEVIRVQLAVCVSNIVKHDFPGKWT-----QIVDKVSIYLQNPDATPWF 103 (116)
Q Consensus 39 ~i~~~~k~~IK~~ll~~l~~~----------~~~i~~~l~~~i~~Ia~~d~P~~Wp-----~Ll~~l~~~l~~~~~~~~~ 103 (116)
.+.+++-+.+| .|+++|.+. ++.+-.-.|.=|+..+++ ||..=. ..=+.++++++++|++..+
T Consensus 388 kf~e~~~~llk-~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~-~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~ 465 (480)
T 1ho8_A 388 EFKKDNYKIFR-QLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPESIDVLDKTGGKADIMELLNHSDSRVKY 465 (480)
T ss_dssp GGSSGGGHHHH-HHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHSHHHHHHHHTSCSSHHHHH
T ss_pred HHHhcchHHHH-HHHHHHhhhccccccccCCCcceEEeecccHHHHHHH-CcchhHHHHHcCcHHHHHHHhcCCCHHHHH
Confidence 45566666666 678888642 245556667778888877 783211 1234567888999999999
Q ss_pred HHHHHHHHHHh
Q psy16982 104 GALLCLYQLVK 114 (116)
Q Consensus 104 ~~L~~L~~l~~ 114 (116)
-||.|+.+++-
T Consensus 466 ~AL~avQklm~ 476 (480)
T 1ho8_A 466 EALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 101
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=62.07 E-value=6.6 Score=25.05 Aligned_cols=46 Identities=11% Similarity=0.155 Sum_probs=32.4
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 69 VCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 69 ~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
..++.+|.. ....-+.++..+.+.+....+....++|+++..|++.
T Consensus 27 ~~LT~~a~~-~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn 72 (145)
T 3d9j_A 27 TQITKAAIK-AIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQ 72 (145)
T ss_dssp HHHHHHHHH-TGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHH
Confidence 344444442 2345567888887777777788889999999999875
No 102
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=61.67 E-value=72 Score=26.82 Aligned_cols=91 Identities=8% Similarity=0.103 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHhccCC----C
Q psy16982 7 MPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPE-VIRVQLAVCVSNIVKHDFP----G 81 (116)
Q Consensus 7 ~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~-~i~~~l~~~i~~Ia~~d~P----~ 81 (116)
..||.+|.-..+-.++. ++++.-..+-..|+..|....+ +.+.....++..++..- | .
T Consensus 109 ~~v~~aa~~~~~~~~~~----------------~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~ 171 (986)
T 2iw3_A 109 KEIQSVASETLISIVNA----------------VNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVAL 171 (986)
T ss_dssp HHHHHHHHHHHHHHHHH----------------SCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred hHHHHHHHHHHHHHHHh----------------CCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHH
Confidence 45666666665555543 4444335555567777765543 56666666777776543 5 2
Q ss_pred chhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 82 KWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 82 ~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
.-|+++|.+...+-..-++....|..++..+|.
T Consensus 172 ~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 172 RMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred hccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 568889988888888778888888888888875
No 103
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=60.21 E-value=43 Score=23.72 Aligned_cols=72 Identities=7% Similarity=0.122 Sum_probs=53.1
Q ss_pred CCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982 39 SLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLV 113 (116)
Q Consensus 39 ~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~ 113 (116)
+++++.-..+=..+...+.+....++--+++.+..+ +.- .--|.+++.+++++.|.|....-.||.+|..+.
T Consensus 107 pL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~--~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 107 PMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPL--EDSKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp CBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS--CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc--cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 566666666666666666655566777778887777 221 347899999999998889999999999887764
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=58.29 E-value=39 Score=23.78 Aligned_cols=52 Identities=12% Similarity=0.065 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhccCCCchhHHH---HHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 62 VIRVQLAVCVSNIVKHDFPGKWTQIV---DKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 62 ~i~~~l~~~i~~Ia~~d~P~~Wp~Ll---~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
..|......+..+...--.. =...+ +.+..++++.|.....+|+.|+-.+++
T Consensus 182 R~R~e~l~~l~~li~~~G~~-~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 182 RQRSECLLVIEYYITNAGIS-PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHHHHHHHHHHHHHCSG-GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCC-ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 35555555555554442222 13467 999999999999999999999988765
No 105
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=54.06 E-value=51 Score=26.52 Aligned_cols=71 Identities=6% Similarity=-0.079 Sum_probs=46.8
Q ss_pred CCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 40 LHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 40 i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
+.+.+-+.+.+.+-.+...+++..|++.-..+..+-+. |+.|+-++. +++ .+.+....+.|+.+|+..+++
T Consensus 18 m~~~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~--p~~~~~~~~-lL~--~~~~~~vr~~aa~~L~~~i~~ 88 (963)
T 2x19_B 18 ALDFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVS--PQAWHFSWQ-LLQ--PDKVPEIQYFGASALHIKISR 88 (963)
T ss_dssp CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS--TTHHHHHHH-HTS--TTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHH-Hhc--CCCchHHHHHHHHHHHHHHHh
Confidence 33344455554444434456678888888888887664 789985444 332 245777888899999887764
No 106
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=53.97 E-value=27 Score=26.42 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCc--h---hHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982 61 EVIRVQLAVCVSNIVKHDFPGK--W---TQIVDKVSIYLQNPDATPWFGALLCLYQLV 113 (116)
Q Consensus 61 ~~i~~~l~~~i~~Ia~~d~P~~--W---p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~ 113 (116)
..++...+.++..++..+=+.. . .+.+|.|++++.++|++....+..+|+.+.
T Consensus 214 ~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs 271 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS 271 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4678889999999997653222 2 356999999999999988888888887765
No 107
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=53.19 E-value=59 Score=26.98 Aligned_cols=57 Identities=9% Similarity=0.083 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHHHHHHHhc--cCCCchhHHHHHHHH--hhCCCChHHHhHHHHHHHHHHhh
Q psy16982 59 APEVIRVQLAVCVSNIVKH--DFPGKWTQIVDKVSI--YLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 59 ~~~~i~~~l~~~i~~Ia~~--d~P~~Wp~Ll~~l~~--~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
+.+.||.+.+.+++.-+.. .-|+.=|.+++.++. .+.+++......+-++|..+|+.
T Consensus 507 ~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 507 PHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp CCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence 3478999999999888765 224444555555555 55556666777888999999874
No 108
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=52.73 E-value=12 Score=24.47 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=20.6
Q ss_pred hHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 84 TQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 84 p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
.-+++.|...+...-+....++|+++-.|++.
T Consensus 40 ~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~ 71 (157)
T 3clj_A 40 SKIISLIIDYSRLCPDSHKLGSLYIIDSIGRA 71 (157)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcceeeeeeehHHHHHH
Confidence 34666666666655566677777777777665
No 109
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=52.18 E-value=66 Score=23.50 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=45.2
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 50 DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 50 ~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
+.|.+=+.++++.+|.....++..|.. |+--+.+.+.+-+.+.+.++-....|+.|..+++..
T Consensus 107 Nsl~kDl~~~N~~iR~lALRtL~~I~~---~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~ 169 (355)
T 3tjz_B 107 SSLTKDMTGKEDSYRGPAVRALCQITD---STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKC 169 (355)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCC---TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHhhcCCCcHhHHHHHHHHHhcCCC---HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc
Confidence 344444555666777765555555544 445788999999999999998888888888887654
No 110
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=51.55 E-value=46 Score=27.95 Aligned_cols=63 Identities=10% Similarity=0.032 Sum_probs=49.4
Q ss_pred HHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCC-ChHHHhHHHHHHHHHHhh
Q psy16982 53 VDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNP-DATPWFGALLCLYQLVKN 115 (116)
Q Consensus 53 l~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~-~~~~~~~~L~~L~~l~~~ 115 (116)
+.++.+-.+.||.....++..|+..-=|..=+-++|.|+..+.++ .-....++|.++..+.+.
T Consensus 101 ~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 101 CTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 333333447899999999999998865666699999999998765 567889999999988763
No 111
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=48.16 E-value=1.1e+02 Score=25.67 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=42.9
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 51 AIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 51 ~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
.++..+.++++..|++.-..+..+-+. |+.|+-+...+ + .+.++...+-|+.+|+..+++
T Consensus 20 ~av~~ly~p~~~~r~~A~~~L~~~q~s--p~aw~~~~~iL-~--~s~~~~vR~faa~~Lk~~I~~ 79 (1023)
T 4hat_C 20 QVVSTFYQGSGVQQKQAQEILTKFQDN--PDAWQKADQIL-Q--FSTNPQSKFIALSILDKLITR 79 (1023)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHC--TTGGGGHHHHH-H--HCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHcC--ccHHHHHHHHh-c--CCCCHHHHHHHHHHHHHHHHh
Confidence 355666666656888888888877666 78999665444 3 245778888899999887764
No 112
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=46.51 E-value=48 Score=20.21 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=37.1
Q ss_pred HHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 53 VDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 53 l~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
|+.|..+...|++...-|+... ..=+++++.+.+.+....++.....|+++..|+.
T Consensus 14 L~~L~~s~~sI~~~s~w~l~h~------~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ 69 (132)
T 4flb_A 14 FQSVTNTMESIQGLSSWCIENK------KHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQ 69 (132)
T ss_dssp HHHCCSSHHHHHHHHHHHHHTG------GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHCcccHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Confidence 3444434356776655555543 2345677777777777778888888988888875
No 113
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=45.68 E-value=34 Score=27.71 Aligned_cols=53 Identities=11% Similarity=0.019 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHHHHhccC--CCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 60 PEVIRVQLAVCVSNIVKHDF--PGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 60 ~~~i~~~l~~~i~~Ia~~d~--P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
.+.+|...+.+++..+..-. |...+.+++.++..++ +.....+-.++..+|+.
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~ 573 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN---SSMSAQATLGLKELCRD 573 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHH
Confidence 57899999999999987643 5678999999998883 44556677777888764
No 114
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=43.57 E-value=80 Score=21.97 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChH
Q psy16982 59 APEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDAT 100 (116)
Q Consensus 59 ~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~ 100 (116)
++.-||+.++..+..|++.+ |+++-.+++.-..+++.
T Consensus 190 ~s~yVrKSVan~LrD~SK~~-----Pd~V~~~~~~w~~~~~~ 226 (240)
T 3l9t_A 190 VSEYVRKSVGNALRDISKKF-----PDLVKIELKNWKLESKE 226 (240)
T ss_dssp SCHHHHHHHHHHHHHHHTTC-----HHHHHHHHHTCCCCSHH
T ss_pred hHHHHHHHHHHHHHHHhhhC-----HHHHHHHHHHhhccCHh
Confidence 44789999999999999986 57777777765444543
No 115
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=42.57 E-value=77 Score=27.60 Aligned_cols=60 Identities=10% Similarity=0.053 Sum_probs=40.7
Q ss_pred HhcCcHHHHHHHHHHHHHHHhccCCCch--hHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982 56 VVMAPEVIRVQLAVCVSNIVKHDFPGKW--TQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116 (116)
Q Consensus 56 l~~~~~~i~~~l~~~i~~Ia~~d~P~~W--p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y 116 (116)
|..+.......++..+..++-..| +.. .+.+..|+..+.+++...+..||.+|..+++.+
T Consensus 408 Ll~S~~~~v~~Fg~~lY~~lF~~f-d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~ 469 (1323)
T 3s4w_B 408 LFHSQDQRIILFGSLLYKYAFKFF-DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLN 469 (1323)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_pred HHhCCCHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcC
Confidence 333333333444555555555555 444 688889998888888888999999999988753
No 116
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=41.11 E-value=58 Score=27.35 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=33.6
Q ss_pred HHHHHhc-CcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhh-CCCChHHHhHHHHHHHHHH
Q psy16982 52 IVDAVVM-APEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYL-QNPDATPWFGALLCLYQLV 113 (116)
Q Consensus 52 ll~~l~~-~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l-~~~~~~~~~~~L~~L~~l~ 113 (116)
||..+.+ ....+|+.....++.|+-.+ | +..+.+++.+ ++.|+..++++-.+|.-++
T Consensus 582 LL~~~~~d~~d~VRraAViaLGlI~~g~-~----e~v~rlv~~L~~~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 582 LLHVAVSDSNDDVRRAAVIALGFVLLRD-Y----TTVPRIVQLLSKSHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHTSSS-C----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHhccCCcHHHHHHHHHHHHhhccCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 4444433 34567777777777776555 2 3455555533 3567777777766666553
No 117
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=39.48 E-value=64 Score=20.32 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=29.4
Q ss_pred CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 81 GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 81 ~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
..=+.++..+...+....+....++|+++..|+++
T Consensus 39 ~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN 73 (144)
T 1sz9_A 39 SCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKN 73 (144)
T ss_dssp GGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHh
Confidence 45667888888888878899999999999999985
No 118
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=38.82 E-value=1.6e+02 Score=24.09 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=41.9
Q ss_pred HHHhcCcHHHHHHHHHHHHHHHhcc------CC-CchhH---HHHHHHHhhCCCChHHHhHHHHHHHHH
Q psy16982 54 DAVVMAPEVIRVQLAVCVSNIVKHD------FP-GKWTQ---IVDKVSIYLQNPDATPWFGALLCLYQL 112 (116)
Q Consensus 54 ~~l~~~~~~i~~~l~~~i~~Ia~~d------~P-~~Wp~---Ll~~l~~~l~~~~~~~~~~~L~~L~~l 112 (116)
+.|.++...||+..+++|..++... |- ..-|. =++.++.+++++|.+....+..+|.-+
T Consensus 613 ~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnL 681 (778)
T 3opb_A 613 NLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANI 681 (778)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3334455799999999999998543 21 22343 278899999999998887776666655
No 119
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*
Probab=37.81 E-value=72 Score=19.77 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=32.1
Q ss_pred CCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhh
Q psy16982 39 SLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYL 94 (116)
Q Consensus 39 ~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l 94 (116)
.+++-+++.+|-.+.+.+...+-+....+.+++ .+|+.-....-+.|++.++..+
T Consensus 76 rl~~~~r~iLrla~yEl~~~~~iP~~vaInEaV-elaK~~~~~~~~~fVNgVL~~i 130 (142)
T 1tzv_A 76 RLSVVDRNVLRLATYELLFEKDIPIEVTIDEAI-EIAKRYGTENSGKFVNGILDRI 130 (142)
T ss_dssp GSCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHH-HHHHHHSCHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhcCCCCchhHHHHHH-HHHHHHCCCcchhhHHHHHHHH
Confidence 588899999999999998753212222333344 2333322223456777766554
No 120
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=37.43 E-value=1.7e+02 Score=24.79 Aligned_cols=52 Identities=12% Similarity=-0.045 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 60 PEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 60 ~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
++..|.+.-..+...-.. |+.|+.+...|. -.+.+....+-|+.+|+..+++
T Consensus 26 ~~~~r~~Ae~~L~~~~~~--p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~ 77 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEK--CPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKF 77 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhC--chHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHH
Confidence 467888888888887555 578987777665 2345677788888888887654
No 121
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=36.64 E-value=21 Score=21.67 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=19.6
Q ss_pred CccCCCCHhHHHHHHHHHHHHHhc
Q psy16982 35 PLAFSLHEQDKAMIRDAIVDAVVM 58 (116)
Q Consensus 35 ~~~~~i~~~~k~~IK~~ll~~l~~ 58 (116)
.+|+.+++++|+.||..+..-|..
T Consensus 77 ~dWp~Yte~erq~v~r~l~~~l~~ 100 (104)
T 2doa_A 77 KDWPGYSEGDQQLLKRVLVRKLSG 100 (104)
T ss_dssp SCCTTCCSHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCC
Confidence 368899999999999888766543
No 122
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=35.37 E-value=57 Score=19.85 Aligned_cols=56 Identities=7% Similarity=0.016 Sum_probs=34.4
Q ss_pred HHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 53 VDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 53 l~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
|+.|..+...|.+...-|+...- .=.+++..+.+.+....++.....|+++..|+.
T Consensus 13 L~~L~~s~~sI~~~s~w~l~~~~------~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ 68 (135)
T 4fu3_A 13 LSELSNSQQSVQTLSLWLIHHRK------HAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQ 68 (135)
T ss_dssp HHHCCSSTTHHHHHHHHHHHTGG------GHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 34444444567666555554432 234566666666666666777788888888753
No 123
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.35 E-value=27 Score=21.08 Aligned_cols=20 Identities=10% Similarity=0.008 Sum_probs=16.7
Q ss_pred CccCCCCHhHHHHHHHHHHH
Q psy16982 35 PLAFSLHEQDKAMIRDAIVD 54 (116)
Q Consensus 35 ~~~~~i~~~~k~~IK~~ll~ 54 (116)
.+|+.+++++|+.+|..+..
T Consensus 78 ~dWp~Yte~erq~v~r~L~~ 97 (100)
T 2e5n_A 78 RDWPGYSEIDRRSLESVLSR 97 (100)
T ss_dssp TTCTTCCTTHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 35889999999999987754
No 124
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=34.72 E-value=70 Score=20.23 Aligned_cols=32 Identities=19% Similarity=0.094 Sum_probs=25.1
Q ss_pred hHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 84 TQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 84 p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
.+.+..|...+++.|+.....+|.+|..+++.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkN 68 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNH 68 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 35667777778888898888999888887764
No 125
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=33.59 E-value=72 Score=20.49 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 62 VIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 62 ~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
..--.+|+.|.. + |..=.+.+..|...|.+.|++....+|.+|..++++
T Consensus 34 ~~~leicD~I~~----~-~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkN 82 (163)
T 1x5b_A 34 SLIMDICDKVGS----T-PNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVAN 82 (163)
T ss_dssp HHHHHHHHHHHH----S-SSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 344455555543 2 233347788888889999999999999999888764
No 126
>1dlc_A Delta-endotoxin CRYIIIA; 2.50A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=33.42 E-value=76 Score=24.83 Aligned_cols=51 Identities=16% Similarity=0.305 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhccCCC--chhHHHHHHHHhhCCC-Ch---HHHhHHHHHHHHHHhh
Q psy16982 65 VQLAVCVSNIVKHDFPG--KWTQIVDKVSIYLQNP-DA---TPWFGALLCLYQLVKN 115 (116)
Q Consensus 65 ~~l~~~i~~Ia~~d~P~--~Wp~Ll~~l~~~l~~~-~~---~~~~~~L~~L~~l~~~ 115 (116)
..+..+++.|...-||. .|.+++..+-++++.. +. +...+-|.-|...++.
T Consensus 26 g~i~~~~s~i~~~lwP~~~~w~~~~~~ve~LIdqkI~~~~~~~a~~~l~gL~~~~~~ 82 (584)
T 1dlc_A 26 GALVSFYTNFLNTIWPSEDPWKAFMEQVEALMDQKIADYAKNKALAELQGLQNNVED 82 (584)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555778888888997 8999999999999875 22 2333444444444443
No 127
>1ciy_A Cryia(A); toxin, ICP; 2.25A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=32.44 E-value=35 Score=26.77 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhccCCCchhHHHHHHHHhhCCC
Q psy16982 66 QLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNP 97 (116)
Q Consensus 66 ~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~ 97 (116)
.++.++..|....+|+.|.+++..+-++++..
T Consensus 28 ~i~~l~~~lw~~l~p~~w~~~~~~ve~LIdqk 59 (590)
T 1ciy_A 28 FVLGLVDIIWGIFGPSQWDAFLVQIEQLINQR 59 (590)
T ss_dssp HHHHHHHHTTSCCSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcccChhHHHHHHHHHHHHHHHH
Confidence 34445666666666777888888888888865
No 128
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=31.65 E-value=80 Score=20.46 Aligned_cols=32 Identities=25% Similarity=0.195 Sum_probs=26.3
Q ss_pred hHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 84 TQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 84 p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
.+.+..|...+.+.|+.....+|.+|..++++
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkN 80 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKN 80 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 46777788888888999999999999888764
No 129
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=30.93 E-value=89 Score=19.44 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=23.5
Q ss_pred hHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 84 TQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 84 p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
.+.+..|...+.++|++....+|.+|..+++.
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkN 72 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSN 72 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 46667777777778888888888888777653
No 130
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=30.13 E-value=92 Score=19.74 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=25.6
Q ss_pred hHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 84 TQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 84 p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
.+.+..|...+.+.|++....+|.+|..+++.
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkN 78 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKS 78 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 46777777888888898888999888887763
No 131
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=29.86 E-value=1.2e+02 Score=21.70 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=50.8
Q ss_pred CCCCHhHHHHHHHHHHHH-------HhcCcHHHHHHHHHHHHHHHhccCC-Cch----hHHHHHHHHhhC----CCCh--
Q psy16982 38 FSLHEQDKAMIRDAIVDA-------VVMAPEVIRVQLAVCVSNIVKHDFP-GKW----TQIVDKVSIYLQ----NPDA-- 99 (116)
Q Consensus 38 ~~i~~~~k~~IK~~ll~~-------l~~~~~~i~~~l~~~i~~Ia~~d~P-~~W----p~Ll~~l~~~l~----~~~~-- 99 (116)
..+++++|+.+-..|-.- ..+.+..+...+-..+...--.|.| .+= =+|++.....+. +++.
T Consensus 185 rnl~~~ErqeLl~~Lk~~YR~IlL~YF~~d~~~Nq~ID~FVN~aFFaDipVtqivEIHMeLmDeFskQLkLEGrsee~Ll 264 (289)
T 1r8j_A 185 RNLPAYESQKLHQAMQTSYREIVLSYFSPNSNLNQSIDNFVNMAFFADVPVTKVVEIHMELMDEFAKKLRVEGRSEDILL 264 (289)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTTCCTTGGG
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence 368988886554433221 1234456777777777777777777 221 257777766554 2333
Q ss_pred HHHhHHHHHHHHHHhhC
Q psy16982 100 TPWFGALLCLYQLVKNY 116 (116)
Q Consensus 100 ~~~~~~L~~L~~l~~~y 116 (116)
+....-+.++..+||.|
T Consensus 265 DYRLtLIDvlAHLcEMY 281 (289)
T 1r8j_A 265 DYRLTLIDVIAHLCEMY 281 (289)
T ss_dssp GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788999999999987
No 132
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=29.63 E-value=1.7e+02 Score=21.74 Aligned_cols=32 Identities=9% Similarity=0.017 Sum_probs=26.4
Q ss_pred HHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982 85 QIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116 (116)
Q Consensus 85 ~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y 116 (116)
.++-.|+.++.+.|+..+...-.+|+.+..||
T Consensus 174 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf 205 (392)
T 2jak_A 174 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKF 205 (392)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHH
Confidence 57788888899999988888888888887764
No 133
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=29.43 E-value=11 Score=16.67 Aligned_cols=10 Identities=30% Similarity=0.766 Sum_probs=6.5
Q ss_pred ccCCCch-hHH
Q psy16982 77 HDFPGKW-TQI 86 (116)
Q Consensus 77 ~d~P~~W-p~L 86 (116)
+-||++| |.+
T Consensus 5 ciypgqynpsf 15 (26)
T 3u7d_B 5 CIFPGQYNPSF 15 (26)
T ss_pred ccccCccCccc
Confidence 3588888 444
No 134
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=29.15 E-value=1.2e+02 Score=20.36 Aligned_cols=52 Identities=8% Similarity=-0.045 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy16982 8 PVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVS 72 (116)
Q Consensus 8 ~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~ 72 (116)
.+|-+||-.+...++++-.. .+.-+..|-..+..++.++.+.+.++.+.+..
T Consensus 105 ~LRd~AA~lL~~I~~~~~~~-------------y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~G 156 (196)
T 4atg_A 105 DVRKMSADIVKYIYDTYSRS-------------YKTLAPRVLKTLKGVWMDPNRSEDSQYGALYC 156 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-------------STTHHHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcc-------------CchHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 69999999999977775431 23456777778888888876666666554433
No 135
>4h79_A Crispr-associated protein, CSE2 family; cascade, CASB, crispr-assoicated protein, nucleic AC binding protein, DNA binding protein; 1.90A {Thermobifida fusca}
Probab=28.76 E-value=1.4e+02 Score=20.22 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhccCCCchhHHHHHHHHh
Q psy16982 46 AMIRDAIVDAVVMAP-EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIY 93 (116)
Q Consensus 46 ~~IK~~ll~~l~~~~-~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~ 93 (116)
..++..+..++...+ ..+..+|-.+|..+-..+-|-+|..|...|...
T Consensus 129 ~~~~rRf~~Ll~a~~~~~l~~~LR~lv~lLr~~~i~~Dy~~La~DL~~w 177 (216)
T 4h79_A 129 EPLRKRFVQVGHAVTYKALAQRLREIVTLLRRDAIPLDYGLLADQLYQF 177 (216)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 456667666666555 678888999999998888899999999999876
No 136
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=28.75 E-value=27 Score=19.73 Aligned_cols=17 Identities=0% Similarity=0.081 Sum_probs=9.1
Q ss_pred hHHHHHHHHhhCCCChH
Q psy16982 84 TQIVDKVSIYLQNPDAT 100 (116)
Q Consensus 84 p~Ll~~l~~~l~~~~~~ 100 (116)
|++++.+++.|..+||.
T Consensus 26 P~lL~~lLqqL~~~NPq 42 (72)
T 1pve_A 26 PSLLPALLQQIGRENPQ 42 (72)
T ss_dssp GGGHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhHCHH
Confidence 45555555555555543
No 137
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=28.52 E-value=1.7e+02 Score=21.19 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhccCC-------CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 61 EVIRVQLAVCVSNIVKHDFP-------GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 61 ~~i~~~l~~~i~~Ia~~d~P-------~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
+..|..+-..+..|..+-|| +.+..+++.++=.+...+.+.-..||.++..++++
T Consensus 136 PehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n 197 (321)
T 1w9c_A 136 PEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQN 197 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 67777777777777766443 46788888888888888888899999999998875
No 138
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=28.50 E-value=1.1e+02 Score=18.91 Aligned_cols=55 Identities=16% Similarity=0.115 Sum_probs=33.0
Q ss_pred CCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhh
Q psy16982 39 SLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYL 94 (116)
Q Consensus 39 ~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l 94 (116)
.+++-+++.+|-.+.+++...+-+....+.+++ .+|+.-....-+.|++.++..+
T Consensus 78 rl~~~~r~iLrla~yEll~~~~iP~~vaInEaV-elaK~~~~~~~~~fVNgVLr~i 132 (141)
T 3d3b_A 78 ELGQVEKAVLRIALYELSKRSDVPYKVAINEAI-ELAKSFGAEDSHKFVNGVLDKA 132 (141)
T ss_dssp CCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHH-HHHHHHSCTTHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHhCCCCCchhhHHHHH-HHHHHHCCCCchHHHHHHHHHH
Confidence 588999999999999998753212222334444 3343322234467777776544
No 139
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=28.12 E-value=29 Score=21.60 Aligned_cols=20 Identities=5% Similarity=0.225 Sum_probs=12.3
Q ss_pred hccCCCchhHHHHHHHHhhC
Q psy16982 76 KHDFPGKWTQIVDKVSIYLQ 95 (116)
Q Consensus 76 ~~d~P~~Wp~Ll~~l~~~l~ 95 (116)
.-++-..||+++..|...+.
T Consensus 21 ~~~~~~~~Pe~L~el~~~ig 40 (129)
T 1rr7_A 21 PAEDTSRFPALLAELNDLLR 40 (129)
T ss_dssp ------CHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHH
Confidence 34566799999999998764
No 140
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A*
Probab=27.55 E-value=60 Score=23.38 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=26.5
Q ss_pred HhhhhhccccccccCCCCC--CccCCCCHhHHHHHHHHHH
Q psy16982 16 YLKNLITNQWVEKEVDPGT--PLAFSLHEQDKAMIRDAIV 53 (116)
Q Consensus 16 ~LKn~i~~~w~~~~~~~~~--~~~~~i~~~~k~~IK~~ll 53 (116)
..|+.+..+|...+-.... .+|..+++++|..++..+-
T Consensus 32 ly~k~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~vL~ 71 (323)
T 3ee4_A 32 LFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCT 71 (323)
T ss_dssp HHHHHHHTCCCGGGSCCTTHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHhcChhhhHHHHHHCCHHHHHHHHHHHH
Confidence 7788888999865322111 2467899999999986554
No 141
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.42 E-value=1.1e+02 Score=18.91 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=46.4
Q ss_pred CCCCHhHHHHHHHHHHHHHhcC-cHHHHHHH--HHHHHHHHhccCCC------------------chhHHHHHHH-----
Q psy16982 38 FSLHEQDKAMIRDAIVDAVVMA-PEVIRVQL--AVCVSNIVKHDFPG------------------KWTQIVDKVS----- 91 (116)
Q Consensus 38 ~~i~~~~k~~IK~~ll~~l~~~-~~~i~~~l--~~~i~~Ia~~d~P~------------------~Wp~Ll~~l~----- 91 (116)
..+++++...+-.=|-..=.+. .+.+++-+ +..+++|.+.-||. +|..|-..++
T Consensus 10 ~~l~~ee~~el~~WL~~l~Ls~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~kl~~ 89 (127)
T 2ee7_A 10 SSVDEEALHQLYLWVDNIPLSRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLKRLNF 89 (127)
T ss_dssp SSCCHHHHHHHHHHHHHSCCSCCSSCHHHHHTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTGGGTC
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCchhhhccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHHHHHHHHcCC
Confidence 3688888776665555322222 24688876 45688888888885 6887753333
Q ss_pred -------HhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 92 -------IYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 92 -------~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
..+.++.+..+...|..|+..+++
T Consensus 90 ~l~~~~i~~i~~~~~Gaie~lL~~L~~~l~~ 120 (127)
T 2ee7_A 90 SVPDDVMRKIAQCAPGVVELVLIPLRQRLEE 120 (127)
T ss_dssp CCCHHHHHHHHTTCTTTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 333344455555566666555443
No 142
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=26.91 E-value=1e+02 Score=23.10 Aligned_cols=32 Identities=9% Similarity=0.017 Sum_probs=24.1
Q ss_pred HHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982 85 QIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116 (116)
Q Consensus 85 ~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y 116 (116)
.++-.|+.++.|.|+..+...-.+|+.|..||
T Consensus 129 ~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf 160 (403)
T 3fga_B 129 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKF 160 (403)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhh
Confidence 35666777888888888777778888777664
No 143
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.82 E-value=1e+02 Score=20.58 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=26.0
Q ss_pred hHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 84 TQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 84 p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
.+.+..|...|.+.|+.....+|.+|..+++.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkN 72 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKN 72 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 36777788888888998888999988887764
No 144
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=26.76 E-value=1.5e+02 Score=23.25 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHH-----HhcCcHHHHHHHHHHHHHHHhcc
Q psy16982 4 EVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDA-----VVMAPEVIRVQLAVCVSNIVKHD 78 (116)
Q Consensus 4 ~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~-----l~~~~~~i~~~l~~~i~~Ia~~d 78 (116)
+.+...|..|+..|.|.+.. +...+..+++.++.. |.+++..||...+.++..++..+
T Consensus 45 S~~~~~r~~A~~al~~l~~~-----------------~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 45 SPDAKSRTTAAGAIANIVQD-----------------AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp SSCCSHHHHHHHHHHHHTTS-----------------HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHcC-----------------cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 45678899999999998731 123345555555544 33455789999999999888765
Q ss_pred CC
Q psy16982 79 FP 80 (116)
Q Consensus 79 ~P 80 (116)
.+
T Consensus 108 g~ 109 (684)
T 4gmo_A 108 EA 109 (684)
T ss_dssp CH
T ss_pred Cc
Confidence 44
No 145
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis} PDB: 3eb7_A
Probab=25.64 E-value=1.3e+02 Score=23.57 Aligned_cols=33 Identities=15% Similarity=0.441 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhccCCC---chhHHHHHHHHhhCCC
Q psy16982 65 VQLAVCVSNIVKHDFPG---KWTQIVDKVSIYLQNP 97 (116)
Q Consensus 65 ~~l~~~i~~Ia~~d~P~---~Wp~Ll~~l~~~l~~~ 97 (116)
..+..+++.|...-||. .|.+++..+-++++..
T Consensus 27 g~~~~~~s~l~~~lWP~~~~~We~~~~~VE~LIdqk 62 (589)
T 2qkg_A 27 GPIVSLYSTLIDVLWPGGKSQWEIFMEQVEALINQK 62 (589)
T ss_dssp HHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHH
Confidence 34445666777777884 5999999999999875
No 146
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=25.53 E-value=1.1e+02 Score=22.45 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=29.9
Q ss_pred CchhHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982 81 GKWTQIVDKVSIYLQNPDATPWFGALLCLYQLV 113 (116)
Q Consensus 81 ~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~ 113 (116)
.++..++....++++++|.-....+|..|++++
T Consensus 205 ~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 205 QHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 578889999999999999999999999999875
No 147
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=25.35 E-value=1e+02 Score=23.47 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhccCC-C---ch--hHHHHHHHHhhCCCChHHHhHHHHHHHHHHhhC
Q psy16982 62 VIRVQLAVCVSNIVKHDFP-G---KW--TQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116 (116)
Q Consensus 62 ~i~~~l~~~i~~Ia~~d~P-~---~W--p~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~y 116 (116)
.++-.....+..|...||+ . ++ ..++-.|+.++.|.|+......-.+|+.|..||
T Consensus 133 HLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf 193 (449)
T 2npp_B 133 HLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKF 193 (449)
T ss_dssp HHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHH
Confidence 3444444445555555664 1 22 358888999999999988888888888887765
No 148
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=25.29 E-value=27 Score=20.39 Aligned_cols=40 Identities=18% Similarity=0.408 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCc--HHHHHHHHHHHHHHHhccCCCchhHHHHHHHH
Q psy16982 47 MIRDAIVDAVVMAP--EVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSI 92 (116)
Q Consensus 47 ~IK~~ll~~l~~~~--~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~ 92 (116)
.|...|+.+|..-. +.| |=+.+|+.-.|+.|-.||+.+-.
T Consensus 7 ~le~~Il~ll~~R~~~kTi------cPSEvARal~~~~Wr~lM~~vR~ 48 (85)
T 2ns0_A 7 ELEECIRALLDARADSASI------CPSDVARAVAPDDWRPLMEPVRE 48 (85)
T ss_dssp HHHHHHHHHHHHSCTTCCB------CHHHHHHHHCTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCc------CHHHHHHHhCchhHHHHhHHHHH
Confidence 67778888887632 111 11222222258899999998854
No 149
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=25.02 E-value=2e+02 Score=24.11 Aligned_cols=62 Identities=5% Similarity=0.051 Sum_probs=0.0
Q ss_pred CCCCCChHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHhccC
Q psy16982 1 MMSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAP-EVIRVQLAVCVSNIVKHDF 79 (116)
Q Consensus 1 ~~~~~~~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~-~~i~~~l~~~i~~Ia~~d~ 79 (116)
||...+.++|.+|...| +..+-. ..+=+.|...+..++ .+|++-....|..+++.+.
T Consensus 522 ~n~~e~~EvRiaA~~~L---m~t~P~-------------------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 522 LNVAIKSELRIRSCIVF---FESKPS-------------------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp HCTTSCHHHHHHHHHHH---HHTCCC-------------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred cCCCCChHHHHHHHHHH---HHHCcC-------------------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Q ss_pred CCchh
Q psy16982 80 PGKWT 84 (116)
Q Consensus 80 P~~Wp 84 (116)
|...+
T Consensus 580 P~~~~ 584 (1056)
T 1lsh_A 580 PEFRD 584 (1056)
T ss_dssp GGGHH
T ss_pred cchHH
No 150
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=25.01 E-value=73 Score=24.50 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccC
Q psy16982 45 KAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDF 79 (116)
Q Consensus 45 k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~ 79 (116)
+-..|..++++|.++++.||.+.-.|+..+..+-|
T Consensus 445 ~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~~~ 479 (480)
T 1ho8_A 445 KTGGKADIMELLNHSDSRVKYEALKATQAIIGYTF 479 (480)
T ss_dssp HHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHSC
T ss_pred HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence 34579999999999999999999999999987754
No 151
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.86 E-value=1.9e+02 Score=20.57 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=46.4
Q ss_pred hhhccccccccCCCCCCccCCCC-HhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHh-hCC
Q psy16982 19 NLITNQWVEKEVDPGTPLAFSLH-EQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIY-LQN 96 (116)
Q Consensus 19 n~i~~~w~~~~~~~~~~~~~~i~-~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~-l~~ 96 (116)
..+.+.|..... ..+ ++.|..+++.|-+.+...+ +.++...|-...-|...++++...+.. +..
T Consensus 147 ~~~~~~WG~~~~--------~~~~eelkkki~~lL~EY~~~~D------~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~ 212 (307)
T 2zu6_B 147 KRKDSVWGSGGG--------QQSVNHLVKEIDMLLKEYLLSGD------ISEAEHCLKELEVPHFHHELVYEAIIMVLES 212 (307)
T ss_dssp --CCCSSCCCST--------TSCHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHCCGGGHHHHHHHHHHHHHTC
T ss_pred hHHhhhcCCCCC--------CCCHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHcCCCcchHHHHHHHHHHHHcc
Confidence 345567774321 233 5778888887777776653 223333333344567788888887764 555
Q ss_pred CChHHHhHHHHHHHHHHh
Q psy16982 97 PDATPWFGALLCLYQLVK 114 (116)
Q Consensus 97 ~~~~~~~~~L~~L~~l~~ 114 (116)
.+..........|..+++
T Consensus 213 ~~~~~re~~~~LL~~L~~ 230 (307)
T 2zu6_B 213 TGESTFKMILDLLKSLWK 230 (307)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 434445555555665553
No 152
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=24.62 E-value=1.9e+02 Score=21.78 Aligned_cols=94 Identities=13% Similarity=0.165 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHhhhhhccc-cccccCCCCCCccCCCCHhHHHHHHHHHHHHHhc----C----cHHHHHHHHHHHHHHHh
Q psy16982 6 DMPVRQAGVVYLKNLITNQ-WVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVM----A----PEVIRVQLAVCVSNIVK 76 (116)
Q Consensus 6 ~~~vR~~Aai~LKn~i~~~-w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~----~----~~~i~~~l~~~i~~Ia~ 76 (116)
+...++++.=.|=|.+... |... .++.+ .++..+++.+.. . .+.+|..++.++--++.
T Consensus 275 ~~an~MltlR~laNlF~~~~~g~~----------ll~~~---~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv 341 (425)
T 3pst_A 275 NITLTMLTVRILVNCFNNENWGVK----------LLESN---QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSA 341 (425)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHH----------HHTSH---HHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHhcCCcchHHH----------HhhCc---hhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHH
Confidence 5567777777777777643 3210 12221 346666666532 1 24677777776665554
Q ss_pred ccC--CCchhHHHHHHHHhhC---------CCChHHHhHHHHHHHHHH
Q psy16982 77 HDF--PGKWTQIVDKVSIYLQ---------NPDATPWFGALLCLYQLV 113 (116)
Q Consensus 77 ~d~--P~~Wp~Ll~~l~~~l~---------~~~~~~~~~~L~~L~~l~ 113 (116)
.-. +.. .+++..+...+. ..|.+.++++|.+|+.++
T Consensus 342 ~~~~~~~~-~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv 388 (425)
T 3pst_A 342 LVTKGNSD-LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 388 (425)
T ss_dssp HHHHSCSC-TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHhcccch-HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHH
Confidence 311 222 567777777776 258899999999998776
No 153
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=24.52 E-value=2.2e+02 Score=21.12 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcC----cHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 47 MIRDAIVDAVVMA----PEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 47 ~IK~~ll~~l~~~----~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
.-++.+++.|.+. +..--.+|.++=..+...| |.--|++++.|++.....+.+...-+...+.+.|++
T Consensus 22 ~~~~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~d-psLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~ 93 (386)
T 3o2t_A 22 TTSERVVDLLNQAALITNDSKITVLKQVQELIINKD-PTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR 93 (386)
T ss_dssp CHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTC-GGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH
Confidence 3445555555442 2222233444444444444 788899999999988888888888888888888765
No 154
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=24.47 E-value=1e+02 Score=17.29 Aligned_cols=27 Identities=19% Similarity=0.522 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhccCCCchhHHHHH
Q psy16982 62 VIRVQLAVCVSNIVKHDFPGKWTQIVDK 89 (116)
Q Consensus 62 ~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~ 89 (116)
....+...-+--++. |.|.+|.++...
T Consensus 17 ~~A~q~kmdLHDLaE-dLP~~w~~i~~v 43 (71)
T 2js5_A 17 AQATALKMDLHDLAE-DLPTGWNRIMEV 43 (71)
T ss_dssp HHHHHHHHHHHHHHH-STTTSGGGHHHH
T ss_pred HHHHHHHHhHHHHhc-cchhhHHHHHHH
Confidence 345566667778888 699999876544
No 155
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=23.88 E-value=61 Score=27.38 Aligned_cols=61 Identities=15% Similarity=0.289 Sum_probs=41.0
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHhh
Q psy16982 50 DAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKN 115 (116)
Q Consensus 50 ~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~~ 115 (116)
+.++..+.++++..|.+.-..+..+-+. |+.|+-+.. +++ .+.++...+-|+.+|+..+++
T Consensus 31 e~lv~~ly~p~~~~r~qA~~~L~q~q~s--p~aw~~~~~-iL~--~s~~~~vR~fAa~~L~~~I~~ 91 (1073)
T 3gjx_A 31 DNVVNCLYHGEGAQQRMAQEVLTHLKEH--PDAWTRVDT-ILE--FSQNMNTKYYGLQILENVIKT 91 (1073)
T ss_dssp HHHHHTTTCSSHHHHHHHHHHHHTSSCC--SCHHHHHTC-C-----CCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHcC--chHHHHHHH-Hhc--CCCCHHHHHHHHHHHHHHHHh
Confidence 3456666667777788877777665443 788985543 332 245778888999999988764
No 156
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=23.79 E-value=3e+02 Score=22.51 Aligned_cols=75 Identities=9% Similarity=0.007 Sum_probs=57.6
Q ss_pred CCCHhHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHhccCCC--chhHHHHHHHHhhCCCChHHHhHHHHHHHHHH
Q psy16982 39 SLHEQDKAMIRDAIVDAVVM--APEVIRVQLAVCVSNIVKHDFPG--KWTQIVDKVSIYLQNPDATPWFGALLCLYQLV 113 (116)
Q Consensus 39 ~i~~~~k~~IK~~ll~~l~~--~~~~i~~~l~~~i~~Ia~~d~P~--~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~ 113 (116)
.+.+..|+.|-++.++.|.+ ....+|...+.++..+....-+. .=.+|.+.+...+.+++.+...-++..|.++.
T Consensus 284 Ci~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLS 362 (778)
T 3opb_A 284 CIDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLS 362 (778)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHT
T ss_pred hCCcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 57788899998888888875 22578888888888888765443 44589999999999887766778888887764
No 157
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=23.41 E-value=2e+02 Score=20.35 Aligned_cols=96 Identities=16% Similarity=0.064 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhhhhhccccccccCCCCCCccCCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcc--CC--Cc
Q psy16982 7 MPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHD--FP--GK 82 (116)
Q Consensus 7 ~~vR~~Aai~LKn~i~~~w~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d--~P--~~ 82 (116)
...++++.=.|=|.+...+... .+- ..+..|-+.+..++....+.+|..++.++--++-.- -+ +.
T Consensus 162 p~n~ml~lR~l~NlF~~~~g~~----------~l~-~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~ 230 (304)
T 3ebb_A 162 PANQLLALRTFCNCFVGQAGQK----------LMM-SQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG 230 (304)
T ss_dssp HHHHHHHHHHHHHGGGSHHHHH----------HHH-HTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred hHHHHHHHHHHHHccCCchhHH----------HHH-HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence 3446666666666666544311 111 112223333333333345788887777766665431 11 12
Q ss_pred hhHHHHHHHHhhCC-CChHHHhHHHHHHHHHH
Q psy16982 83 WTQIVDKVSIYLQN-PDATPWFGALLCLYQLV 113 (116)
Q Consensus 83 Wp~Ll~~l~~~l~~-~~~~~~~~~L~~L~~l~ 113 (116)
=..++..+.+.+.. +|.+.++++|.+|+.++
T Consensus 231 ~~~ll~~l~~il~~~~d~EalyR~LvALGtL~ 262 (304)
T 3ebb_A 231 KAQCLSLISTILEVVQDLEATFRLLVALGTLI 262 (304)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 22355555555543 58899999999998876
No 158
>1k19_A Chemosensory protein CSP2; pheromone, lipid transport; NMR {Mamestra brassicae} SCOP: a.118.21.1 PDB: 1kx8_A 1kx9_A 1n8u_A* 1n8v_A* 2jnt_A
Probab=23.37 E-value=1.3e+02 Score=18.26 Aligned_cols=48 Identities=10% Similarity=0.197 Sum_probs=30.3
Q ss_pred CCCHhHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHHHHhccCCCchhHHHH
Q psy16982 39 SLHEQDKAMIRDAIVDAVVM----APEVIRVQLAVCVSNIVKHDFPGKWTQIVD 88 (116)
Q Consensus 39 ~i~~~~k~~IK~~ll~~l~~----~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~ 88 (116)
..+++- ..+|..|-++|.+ ++.+=+..+-.+|..+... +|+.|..|+.
T Consensus 35 pCtpeg-k~lK~~lpeAl~t~C~KCTekQK~~~~kvi~~l~~n-~P~~W~~L~~ 86 (112)
T 1k19_A 35 KCSPEG-KELKEHLQDAIENGCKKCTENQEKGAYRVIEHLIKN-EIEIWRELTA 86 (112)
T ss_dssp SSHHHH-HHHHHHHHHHTTTTCTTSCSHHHHHHHHHHHHHHHH-HSCHHHHHHH
T ss_pred CCCHHH-HHHHHHhHHHHhccCCCCCHHHHHHHHHHHHHHHHc-ChHHHHHHHH
Confidence 344444 4588888888876 2334444555556666555 6999987654
No 159
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=23.28 E-value=91 Score=18.92 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=30.6
Q ss_pred CCHhHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHHHHhccCCCchhHHHHH
Q psy16982 40 LHEQDKAMIRDAIVDAVVM----APEVIRVQLAVCVSNIVKHDFPGKWTQIVDK 89 (116)
Q Consensus 40 i~~~~k~~IK~~ll~~l~~----~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~ 89 (116)
.+++-| .+|..|-++|.+ ++.+=+...-.+|..+... +|+.|..|...
T Consensus 38 Ctpegk-~lK~~lpeAl~t~C~KCTekQK~~~~kvi~~l~~n-~P~~W~~L~~K 89 (109)
T 2gvs_A 38 CTADGK-ELKSVIPDALSNECAKCNEKQKEGTKKVLKHLINH-KPDVWAQLKAK 89 (109)
T ss_dssp CCTTHH-HHHHHTTHHHHSTTTTSCHHHHHHHHHHHHHHHHH-CHHHHHHHHHH
T ss_pred CCHHHH-HHHHHhHHHHhccCCCCCHHHHHHHHHHHHHHHHc-ChHHHHHHHHH
Confidence 445544 478888888876 3344455555566666555 68899877653
No 160
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=22.56 E-value=76 Score=24.95 Aligned_cols=60 Identities=20% Similarity=0.159 Sum_probs=41.0
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhccCCC-----chhHHHHHHH-HhhCCCChHHHhHHHHHHHHHH
Q psy16982 52 IVDAVVMAPEVIRVQLAVCVSNIVKHDFPG-----KWTQIVDKVS-IYLQNPDATPWFGALLCLYQLV 113 (116)
Q Consensus 52 ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~-----~Wp~Ll~~l~-~~l~~~~~~~~~~~L~~L~~l~ 113 (116)
+++-|.+++...|...|.+|+.|+. | |. .=.+++..++ .++...+.+.+..|..+|+-|+
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~-~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~ 104 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQ-D-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLA 104 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTT-S-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHc-C-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3344445567899999999999986 3 22 1123455544 4577778888888888887775
No 161
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A
Probab=22.43 E-value=74 Score=22.37 Aligned_cols=38 Identities=21% Similarity=0.298 Sum_probs=24.9
Q ss_pred HhhhhhccccccccCCCC--CCccCCCCHhHHHHHHHHHH
Q psy16982 16 YLKNLITNQWVEKEVDPG--TPLAFSLHEQDKAMIRDAIV 53 (116)
Q Consensus 16 ~LKn~i~~~w~~~~~~~~--~~~~~~i~~~~k~~IK~~ll 53 (116)
+-|+....+|...+-... ..+|..+++++|..++..+-
T Consensus 29 ~ykk~~~~fW~peEI~ls~D~~dw~~L~~~Er~~~~~~l~ 68 (286)
T 3olj_A 29 MYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLA 68 (286)
T ss_dssp HHHHHHHTCCCGGGSCCTTSHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHcChhhhHHHHHhCCHHHHHHHHHHHH
Confidence 345667789986432211 12467899999999886643
No 162
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=21.97 E-value=2.4e+02 Score=20.68 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHHhccC----C-----CchhHHHHHHHHhhCCCChHHHhHHH
Q psy16982 45 KAMIRDAIVDAVVMA----PEVIRVQLAVCVSNIVKHDF----P-----GKWTQIVDKVSIYLQNPDATPWFGAL 106 (116)
Q Consensus 45 k~~IK~~ll~~l~~~----~~~i~~~l~~~i~~Ia~~d~----P-----~~Wp~Ll~~l~~~l~~~~~~~~~~~L 106 (116)
.+..++.++..|... +-.-|+..+.+++.+.+..- | ...|+++..++......+.....|.+
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~m 146 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIM 146 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHH
Confidence 456677777666653 23567788888888877642 2 25789999999988887776655544
No 163
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=21.32 E-value=1.9e+02 Score=19.34 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=24.5
Q ss_pred HHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHH
Q psy16982 53 VDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVS 91 (116)
Q Consensus 53 l~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~ 91 (116)
|+.+..--..+.+.+...+..|...+-.-.||+|+....
T Consensus 13 LEs~R~Rl~qL~~Sl~~l~~~l~~~~~lp~W~sll~q~~ 51 (200)
T 4h63_H 13 LEAIRHRIAQIVQSLTHFLAILHQSESLSPWPTIHKNFN 51 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 344433334666677777777776542259999988743
No 164
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=21.20 E-value=1.7e+02 Score=22.69 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=46.3
Q ss_pred CcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhhCCCChHHHhHHHHHHHHHHh
Q psy16982 59 APEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114 (116)
Q Consensus 59 ~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~~~~~~~~~~~L~~L~~l~~ 114 (116)
.+.+.+...++.|..-.++ ||+-=.+-++.++.+...+|......|+.-|-.+|+
T Consensus 40 g~~k~K~LaaQ~I~kffk~-FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck 94 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKH-FPELADSAINAQLDLCEDEDVSIRRQAIKELPQFAT 94 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGG-CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCC
T ss_pred CCHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhh
Confidence 3477888888888888776 898888899999999999999888888888888776
No 165
>4gwp_C Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_C 3rj1_C 1edi_A 1edj_A 1edk_A 1edl_A
Probab=20.78 E-value=1.2e+02 Score=22.74 Aligned_cols=48 Identities=15% Similarity=0.296 Sum_probs=31.1
Q ss_pred CCCCHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHhh
Q psy16982 38 FSLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYL 94 (116)
Q Consensus 38 ~~i~~~~k~~IK~~ll~~l~~~~~~i~~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l 94 (116)
..+|-+.-+.+|..+.++. +.+......|.....| .||+|.....-.+
T Consensus 26 s~vPv~aLEslR~RL~QLt--------~SL~sL~~~L~~spLP-~W~SLqsQfnILl 73 (407)
T 4gwp_C 26 NGVPGQALDAVRMRLAQLT--------HSLRRIRDEMSKAELP-QWYTLQSQLNVTL 73 (407)
T ss_dssp CCCCCTTHHHHHHHHHHHH--------HHHHHHHHHHHCTTSC-CCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHH--------HHHHHHHHHHhcCCCC-CcHHHHHHHHHHH
Confidence 4567777788888776543 3334444455666777 8999988765433
No 166
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=20.60 E-value=96 Score=21.38 Aligned_cols=94 Identities=12% Similarity=0.100 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHhhhhhcccc-ccccCCCCCCccCCCCHhHHHHHHHHHHHHHh----cC----cHHHHHHHHHHHHHHHh
Q psy16982 6 DMPVRQAGVVYLKNLITNQW-VEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVV----MA----PEVIRVQLAVCVSNIVK 76 (116)
Q Consensus 6 ~~~vR~~Aai~LKn~i~~~w-~~~~~~~~~~~~~~i~~~~k~~IK~~ll~~l~----~~----~~~i~~~l~~~i~~Ia~ 76 (116)
+...|+++.=.|=|.+.... ... .+..+ .++..+++.+. +. .+.+|..++..+--++.
T Consensus 103 ~~~~~ml~lR~l~NlF~~~~~g~~----------l~~~~---~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av 169 (253)
T 3gae_A 103 NITLTMLTVRILVNCFNNENWGVK----------LLESN---QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSA 169 (253)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHH----------HHTSH---HHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHcccCCchHHH----------HHhcc---hhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHH
Confidence 56778888888888887654 321 12222 24555555542 22 25678777777666654
Q ss_pred ccC--CCchhHHHHHHHHhhCC---------CChHHHhHHHHHHHHHH
Q psy16982 77 HDF--PGKWTQIVDKVSIYLQN---------PDATPWFGALLCLYQLV 113 (116)
Q Consensus 77 ~d~--P~~Wp~Ll~~l~~~l~~---------~~~~~~~~~L~~L~~l~ 113 (116)
.-. +.+ .++...+.+.+.. +|.+.+|++|.+|+.++
T Consensus 170 ~~~~~~~~-~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~ 216 (253)
T 3gae_A 170 LVTKGNSD-LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 216 (253)
T ss_dssp HHHTSCSC-TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHhhccch-HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHH
Confidence 311 112 5666667666652 37789999999998776
Done!