RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16982
(116 letters)
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1z3h_A
Length = 960
Score = 93.4 bits (231), Expect = 9e-24
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
+ + + R AG ++ KN I +WV++ + L + +I+ IV ++ P
Sbjct: 47 TNLPLSTRLAGALFFKNFIKRKWVDENGN------HLLPANNVELIKKEIVPLMISLPNN 100
Query: 63 IRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
++VQ+ +S+I DFP +W ++ ++ L N D G L + + K +
Sbjct: 101 LQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 64.4 bits (156), Expect = 1e-13
Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 12/111 (10%)
Query: 6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIRV 65
D P R + LKN + + + I+ ++ + + +IR
Sbjct: 61 DEPTRSLSGLILKNNVKAHFQ------------NFPNGVTDFIKSECLNNIGDSSPLIRA 108
Query: 66 QLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
+ + ++ I W ++ K+ L + D GA L ++ ++
Sbjct: 109 TVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDS 159
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 56.4 bits (135), Expect = 1e-10
Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 2/112 (1%)
Query: 3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
+ R + LKN + ++ K + + K I+ + A+V
Sbjct: 51 ENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPR 110
Query: 63 IRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPW-FGALLCLYQL 112
I A ++ I + P G W +++ + +LL L +
Sbjct: 111 IANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYM 162
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 56.0 bits (134), Expect = 1e-10
Identities = 14/117 (11%), Positives = 46/117 (39%), Gaps = 5/117 (4%)
Query: 3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
R A + +KN +T++ + + ++ + +++ ++ +
Sbjct: 47 PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW-LAIDANARREVKNYVLQTLGTETYR 105
Query: 63 IRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATP--WFGALLCLYQLVKNY 116
+ CV+ I + P +W +++ ++ + NP++T L + + ++
Sbjct: 106 PS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 51.0 bits (121), Expect = 7e-09
Identities = 14/117 (11%), Positives = 46/117 (39%), Gaps = 5/117 (4%)
Query: 3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
R A + +KN +T++ + + ++ + +++ ++ +
Sbjct: 47 PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL-AIDANARREVKNYVLHTLGTETYR 105
Query: 63 IRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPWF--GALLCLYQLVKNY 116
+ CV+ I + P +W +++ ++ + NP++T L + + ++
Sbjct: 106 PS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family,
nucleus, phosphoprotein, protein transport; HET: GTP;
2.92A {Homo sapiens}
Length = 1204
Score = 42.3 bits (98), Expect = 8e-06
Identities = 14/113 (12%), Positives = 45/113 (39%), Gaps = 20/113 (17%)
Query: 9 VRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVM-------APE 61
VR G+ L++++ +W + +K +++++++ +
Sbjct: 63 VRHFGLQILEHVVKFRWNG------------MSRLEKVYLKNSVMELIANGTLNILEEEN 110
Query: 62 VIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114
I+ L+ V ++K ++P W ++ ++ + + + L +L +
Sbjct: 111 HIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELV-MFILLRLAE 162
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 41.4 bits (96), Expect = 2e-05
Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 22/116 (18%)
Query: 6 DMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVD---------AV 56
+M + G+ L+N+I +W L I+ +V
Sbjct: 74 NMNTKYYGLQILENVIKTRWKI------------LPRNQCEGIKKYVVGLIIKTSSDPTC 121
Query: 57 VMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQL 112
V +V +L + + I+K ++P W + + + ++ ++ L L
Sbjct: 122 VEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNN-MVILKLL 176
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.004
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 21/87 (24%)
Query: 39 SLHEQDKAMIRDAIVDAVVMAPEVIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPD 98
L++ ++ D I + L+ + D +TQ ++ + +L+NP
Sbjct: 175 DLYQTYHVLVGDLI--------KFSAETLSELIRT--TLDAEKVFTQGLNILE-WLENPS 223
Query: 99 ATP---WFGA------LLCLYQLVKNY 116
TP + + L+ + QL +Y
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLA-HY 249
Score = 28.1 bits (62), Expect = 0.77
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 17 LKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEVIR 64
+ +++ N V + G + E AMI + IVD + ++ +
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Score = 27.3 bits (60), Expect = 1.2
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 22/100 (22%)
Query: 16 YLKN---LITNQWVEKEVD-PGTPLAFSLHE----QD----KAMIRDAIVDAVVMAPEVI 63
L LI V+ V + +++ D I + IVD ++ P
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP--- 487
Query: 64 RVQLAVCVSNIVKH--DF-PGKWTQIVDKVSIYLQNPDAT 100
V+ H DF PG + + +N D T
Sbjct: 488 -VKWETTTQFKATHILDFGPGGASGLGVLTH---RNKDGT 523
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.12
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 5/24 (20%)
Query: 85 QIVDKV--SIYLQNPDATPWFGAL 106
Q + K+ S+ L D+ P AL
Sbjct: 20 QALKKLQASLKLYADDSAP---AL 40
>3vat_A Dnpep, aspartyl aminopeptidase; alpha-beta-alpha sandwich, binuclea
center, M18 peptidase, MH CLAN, tetrahedral
aminopeptidase, hydrolase; 2.10A {Bos taurus} PDB:
3var_A 3l6s_A* 4dyo_A*
Length = 496
Score = 28.2 bits (63), Expect = 0.57
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 5 VDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAF 38
D + AG V +K + + ++ V P+
Sbjct: 151 FDRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILR 184
>3okz_A Putative uncharacterized protein GBS0355; structural genomics,
PSI-biology; 2.70A {Streptococcus agalactiae}
Length = 306
Score = 25.1 bits (55), Expect = 7.5
Identities = 4/37 (10%), Positives = 11/37 (29%)
Query: 63 IRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDA 99
+ + +I + G+ + D S +
Sbjct: 230 NLLAYKDSLEHIKSYQLKGEDATLSDGGSYQILTKKH 266
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus
tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A*
1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 24.8 bits (55), Expect = 8.0
Identities = 6/61 (9%), Positives = 15/61 (24%), Gaps = 8/61 (13%)
Query: 11 QAGVVYLKNLITNQWVEKE-----VDP--GTPLAFSLHEQDKAMIRDAIVDAVVMAPEVI 63
+ GV + + +W P +A + + + +
Sbjct: 13 KGGVPVYPSYLAGEWGGSGQEIEVKSPIDLATIA-KVISPSREEVERTLDVLFKRGRWSA 71
Query: 64 R 64
R
Sbjct: 72 R 72
>3p12_A D-ribose pyranase; carbohydrate metabolism, ISOM; 2.35A
{Staphylococcus aureus} PDB: 3p13_A*
Length = 144
Score = 24.4 bits (53), Expect = 9.1
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 24 QWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVV 57
Q +++ + + F HE+ K+ + + +
Sbjct: 84 QQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNI 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.420
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,844,517
Number of extensions: 99992
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 18
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.0 bits)