RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16982
(116 letters)
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 105 bits (262), Expect = 2e-28
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
+ + + R AG ++ KN I +WV++ + L + +I+ IV ++ P
Sbjct: 47 TNLPLSTRLAGALFFKNFIKRKWVDENGNHL------LPANNVELIKKEIVPLMISLPNN 100
Query: 63 IRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVKNY 116
++VQ+ +S+I DFP +W ++ ++ L N D G L + + K +
Sbjct: 101 LQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 72.4 bits (176), Expect = 8e-17
Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 2 MSEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPE 61
+ D P R + LKN + + + I+ ++ + +
Sbjct: 55 LKSEDEPTRSLSGLILKNNVKAHFQ------------NFPNGVTDFIKSECLNNIGDSSP 102
Query: 62 VIRVQLAVCVSNIVKHDFPGKWTQIVDKVSIYLQNPDATPWFGALLCLYQLVK 114
+IR + + ++ I W ++ K+ L + D GA L ++ +
Sbjct: 103 LIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICE 155
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 72.6 bits (176), Expect = 9e-17
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 2/114 (1%)
Query: 3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
+ R + LKN + ++ K + + K I+ + A+V
Sbjct: 51 ENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPR 110
Query: 63 IRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPW-FGALLCLYQLVK 114
I A ++ I + P G W +++ + +LL L + +
Sbjct: 111 IANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCE 164
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 71.3 bits (173), Expect = 2e-16
Identities = 14/117 (11%), Positives = 46/117 (39%), Gaps = 5/117 (4%)
Query: 3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
R A + +KN +T++ + + ++ + +++ ++ +
Sbjct: 47 PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW-LAIDANARREVKNYVLHTLG-TETY 104
Query: 63 IRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPW--FGALLCLYQLVKNY 116
+ CV+ I + P +W +++ ++ + NP++T L + + ++
Sbjct: 105 RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 48.3 bits (113), Expect = 2e-08
Identities = 13/101 (12%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Query: 3 SEVDMPVRQAGVVYLKNLITNQWVEKEVDPGTPLAFSLHEQDKAMIRDAIVDAVVMAPEV 62
R A + +KN +T++ + + ++ + +++ ++ +
Sbjct: 46 PGNSQVARVAAGLQIKNSLTSKDPDIK-AQYQQRWLAIDANARREVKNYVLQTLGTETYR 104
Query: 63 IRVQLAVCVSNIVKHDFP-GKWTQIVDKVSIYLQNPDATPW 102
+ CV+ I + P +W +++ ++ + NP++T
Sbjct: 105 PS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEH 144
>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase
iron-sulfur protein, N-domain {Hydrogenophaga
pseudoflava [TaxId: 47421]}
Length = 79
Score = 24.0 bits (52), Expect = 2.5
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 18 KNLIT----NQWVEKEVDPGTPLAFSLHEQ 43
K +IT + EK V+P T L L E+
Sbjct: 1 KKIITVNVNGKAQEKAVEPRTLLIHFLREE 30
>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase
iron-sulfur protein, N-domain {Oligotropha
carboxidovorans, formerly Pseudomonas carboxydovorans
[TaxId: 40137]}
Length = 79
Score = 23.6 bits (51), Expect = 3.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 21 ITNQWVEKEVDPGTPLAFSLHEQ 43
I VE V+P T L + EQ
Sbjct: 8 INGHPVEALVEPRTLLIHFIREQ 30
>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma
subunit HrcC, N-terminal domain {Thauera aromatica
[TaxId: 59405]}
Length = 81
Score = 22.9 bits (49), Expect = 6.2
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 17 LKNLIT----NQWVEKEVDPGTPLAFSLHEQ 43
+KN++ + E V L L E
Sbjct: 1 MKNILRLTLNGRAREDLVPDNMLLLDYLRET 31
>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core,
domain 1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 23.8 bits (51), Expect = 6.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 2 MSEVDMPVRQAGVVYLKNLITNQWV 26
+ D V + V L++L TN WV
Sbjct: 140 LRGGDSLVPRNSYVRLRHLCTNTWV 164
>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal
domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 80
Score = 22.9 bits (49), Expect = 7.2
Identities = 5/23 (21%), Positives = 6/23 (26%)
Query: 21 ITNQWVEKEVDPGTPLAFSLHEQ 43
+ V P L L Q
Sbjct: 8 VNGMARRLLVSPNDLLVDVLRSQ 30
>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small
subunit QorS, N-domain {Pseudomonas putida [TaxId:
303]}
Length = 81
Score = 22.9 bits (49), Expect = 8.0
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 21 ITNQWVEKEVDPGTPLAFSLHEQ 43
I + V+P LA +L E
Sbjct: 10 INGKPRVFYVEPRMHLADALREV 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.420
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 442,214
Number of extensions: 18601
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 15
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)